Packages required but not available: 'GenEst', 'rjags'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Packages required but not available:
  'officer', 'rvg', 'flextable', 'broom', 'dplyr', 'ggplotify',
  'devEMF', 'magick', 'ggplot2', 'htmlwidgets', 'plotly'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.r’ [0s/0s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
  > #*****************************************
  > #
  > # (C) Copyright IBM Corp. 2017
  > # Author: Ernesto Arandia & Bradley J Eck
  > #
  > #*****************************************
  > 
  > 
  > 
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.r’ [0s/1s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Found the following files/directories:
  ‘Net1-fromR.inp’
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggcorrplot', 'tidyverse', 'rmarkdown', 'reshape2', 'RSpectra',
  'matlabr', 'PMA', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                           ^
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                                        ^
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Errors in running code in vignettes:
when running code in ‘epca.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘epca.Rmd’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Found export directives that require package ‘methods’:
  ‘exportClasses’ ‘exportMethods’
Remove all such namespace directives (if obsolete) or ensure that the
DESCRIPTION Depends or Imports field contains ‘methods’.
Packages required but not available: 'glmnet', 'timeROC'

Packages suggested but not available for checking: 'ROCR', 'c060', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'scales', 'tidyr', 'readxl', 'janitor', 'furrr',
  'lubridate', 'tsibble', 'stringr', 'fabletools', 'feasts', 'future',
  'readr', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'expss', 'stringr', 'readxl', 'tidyr', 'leaflet',
  'htmltools'

Packages suggested but not available for checking:
  'testthat', 'lubridate', 'rmarkdown', 'ggplot2', 'readr', 'httptest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘forecast’

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rio', 'dplyr', 'tidyr', 'ggplot2', 'stringr', 'janitor'

Packages suggested but not available for checking:
  'testthat', 'haven', 'readxl', 'openxlsx', 'xml2', 'readODS', 'fst',
  'feather', 'arrow', 'stringi', 'ggtext', 'ggdist', 'scales',
  'spsUtil', 'rmarkdown', 'ggh4x'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'igraph', 'visNetwork', 'threejs'

Packages suggested but not available for checking:
  'testthat', 'covr', 'shiny', 'readr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/EpiContactTrace.Rcheck/00install.out’ for details.
Packages required but not available:
  'ggplot2', 'dplyr', 'ISOweek', 'scales'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'rvest', 'xml2', 'tidyr', 'readr', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cachem', 'readr', 'xml2'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) risk.display.rd:98: Escaped LaTeX specials: \$
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'odbc', 'phonics', 'readr', 'stringi', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'coarseDataTools', 'reshape2', 'ggplot2', 'incidence', 'scales'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'tidyr', 'DescTools'

Packages suggested but not available for checking:
  'rmarkdown', 'ggridges', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'epicontacts', 'leaflet', 'ggmap', 'geosphere', 'ggplot2',
  'htmltools', 'visNetwork'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'vdiffr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cowplot', 'dplyr', 'ggplot2', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'rmarkdown', 'spelling', 'devtools',
  'usethis', 'pkgdown', 'styler', 'lintr', 'covr', 'igraph', 'stringr',
  'dplyr', 'ggplot2'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘adaptMCMC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'testthat', 'rmarkdown', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'scales', 'dplyr', 'tidyr', 'ggplot2', 'sf'

Packages suggested but not available for checking:
  'testthat', 'epidict', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rfast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'EpiEstim', 'ggplot2', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'plotly', 'ggplot2'

Packages suggested but not available for checking:
  'ade4', 'fields', 'forecast', 'imputeTS', 'lme4', 'pomp',
  'rworldmap', 'statnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'ade4', 'fields', 'forecast', 'imputeTS', 'lme4', 'pomp', 'statnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'networkDynamic', 'tergm', 'ergm', 'ergm.ego', 'egor', 'ape',
  'ggplot2', 'dplyr', 'networkLite', 'Rcpp'

Packages suggested but not available for checking:
  'ndtv', 'rmarkdown', 'shiny', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'GA', 'ggplot2', 'igraph', 'Rcpp', 'RcppAlgos', 'reshape2', 'vcfR'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'future', 'future.apply', 'ggplot2', 'lubridate', 'patchwork',
  'progressr', 'Rcpp', 'rstan', 'rstantools', 'runner', 'scales',
  'RcppEigen', 'RcppParallel', 'StanHeaders'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'kableExtra', 'precommit', 'rmarkdown', 'spelling',
  'styler', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggrepel', 'lme4', 'lmerTest', 'qgcomp'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'transport', 'Rcpp'

Packages suggested but not available for checking:
  'dplyr', 'tidyr', 'spdep', 'emdbook', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'etm', 'plyr', 'dplyr'

Packages suggested but not available for checking:
  'lme4', 'demography', 'popEpi', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'officer', 'flextable', 'dplyr', 'tidyr', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BiasedUrn', 'pander', 'sf', 'lubridate', 'flextable', 'officer'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'plyr', 'scales', 'spatstat',
  'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Found the following files/directories:
  ‘episcan_1geno_cc.txt’ ‘episcan_1geno_quant.txt’
  ‘episcan_2geno_cc.txt’ ‘episcan_2geno_quant.txt’
Packages required but not available:
  'devtools', 'tidyverse', 'seqinr', 'stringr', 'e1071', 'caret', 'gbm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dagitty', 'ggdag'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tidyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ISOweek', 'rmarkdown', 'shiny', 'surveillance'

Packages suggested but not available for checking:
  'DT', 'ggplot2', 'pander'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'epiR', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Packages required but not available: 'kableExtra', 'xml2'

Packages suggested but not available for checking: 'dplyr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggrepel', 'MM4LMM', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringi', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'incidence', 'rmarkdown', 'ggplot2', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'crul', 'DT', 'emayili', 'future', 'httpuv', 'htmltools',
  'ggplot2', 'janitor', 'plotly', 'readxl', 'rmarkdown', 'openxlsx',
  'plyr', 'shiny', 'stringr', 'tidyverse', 'tidytext', 'xml2'

Package suggested but not available for checking: ‘taskscheduleR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ciTools'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lubridate', 'RSQLite', 'stringi', 'units'

Packages suggested but not available for checking:
  'decido', 'rgl', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'terra', 'sf', 'ape', 'Rcpp'

Packages suggested but not available for checking:
  'tmap', 'spdep', 'exactextractr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'units', 'lubridate'

Packages suggested but not available for checking:
  'usethis', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'testthat', 'TopKLists', 'stringr', 'cowplot'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'rmarkdown', 'scales'

Packages suggested but not available for checking:
  'cleanrmd', 'dbplyr', 'dplyr', 'pandoc', 'shiny', 'shinytest2',
  'testthat'

VignetteBuilder packages required for checking but not installed:
  'cleanrmd', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'lme4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Copyright 2019-2019 Steven E. Pav. All Rights Reserved.
  > # Author: Steven E. Pav
  > 
  > # This file is part of epsiwal.
  > #
  > # epsiwal is free software: you can redistribute it and/or modify
  > # it under the terms of the GNU Lesser General Public License as published by
  > # the Free Software Foundation, either version 3 of the License, or
  > # (at your option) any later version.
  > #
  > # epsiwal is distributed in the hope that it will be useful,
  > # but WITHOUT ANY WARRANTY; without even the implied warranty of
  > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > # GNU Lesser General Public License for more details.
  > #
  > # You should have received a copy of the GNU Lesser General Public License
  > # along with epsiwal.  If not, see <http://www.gnu.org/licenses/>.
  > 
  > # env var:
  > # nb: 
  > # see also:
  > # todo:
  > # changelog: 
  > #
  > # Created: 2019-06-10
  > # Copyright: Steven E. Pav, 2019-2019
  > # Author: Steven E. Pav
  > # Comments: Steven E. Pav
  > 
  > # because Hadley says it should be like this.
  > # see https://github.com/hadley/devtools/wiki/Testing
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'xml2', 'xslt', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'doRNG', 'rngtools'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'testthat', 'shiny', 'DT', 'readxl', 'ggplot2', 'ggiraph',
  'ggiraphExtra', 'shinycssloaders', 'shinyWidgets', 'FSA',
  'PMCMRplus', 'rmarkdown', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'xml2', 'xslt', 'katex'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mirt’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'equateIRT', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'bookdown'
Package required but not available: ‘units’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘PairedData’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘cubature’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BiasedUrn’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'osd', 'igraph', 'future', 'furrr'

Packages suggested but not available for checking:
  'mzR', 'rmarkdown', 'prettydoc', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'dplyr', 'spelling', 'tidyr',
  'lubridate'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/erboost.Rcheck/00install.out’ for details.
checkRd: (-1) Tm.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:52-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:55-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:58-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:36-39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:40-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:43-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:47-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:57-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:60-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:63-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:69-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:75-77: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘systemfit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ergm', 'btergm', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'Rcpp', 'ergm.count'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ergm', 'egor', 'dplyr', 'survey'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ergm', 'networkDynamic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ergm', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'testthat', 'ggplot2', 'ggrepel'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

Packages suggested but not available for checking: 'covr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'memoise', 'stringr'

Packages suggested but not available for checking:
  'latticeExtra', 'rmarkdown', 'testthat', 'ergm.count', 'covr',
  'Rglpk', 'networkLite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'EpiEstim', 'ggplot2', 'lubridate', 'patchwork', 'rjags',
  'runjags', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'bookdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'prettydoc', 'rmarkdown'
checkRd: (-1) ifa.Rd:16: Lost braces; missing escapes or markup?
    16 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then Sigma^{-1} 
       |                                                                         ^
checkRd: (-1) ifa.Rd:17: Lost braces; missing escapes or markup?
    17 | has the corresponding q-factor decomposition Sigma^{-1}=diag(phi)(I-theta theta')diag(phi), where theta is a mxq matrix and phi the vector of 
       |                                                    ^
checkRd: (-1) ifa.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{iSB}{m x q matrix (diag(Psi)+BB')^{-1}B.}
       |                                         ^
checkRd: (-1) isqrtfa.Rd:15: Lost braces; missing escapes or markup?
    15 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then the function returns a matrix Omega such that Sigma^{-1} = Omega Omega'. Equivalently,
       |                                                                                                                       ^
Packages required but not available:
  'ggplot2', 'scales', 'glmnet', 'plsVarSel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) best_distribution.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) best_distribution.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) best_distribution.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) best_distribution.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) best_distribution.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) best_distribution.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) best_distribution.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sort_distributions.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sort_distributions.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sort_distributions.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sort_distributions.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sort_distributions.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sort_distributions.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sort_distributions.Rd:42: Lost braces in \itemize; meant \describe ?
S3 methods shown with full name in Rd file 'summary.error_interval.Rd':
  ‘summary.error_interval’

S3 methods shown with full name in Rd file 'summary.measure.Rd':
  ‘summary.measure’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'testthat', 'vdiffr', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘simcdm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'miniUI', 'ggplot2', 'car', 'broom', 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plotly', 'raster', 'rasterVis'

Packages suggested but not available for checking:
  'pander', 'plyr', 'rmarkdown', 'sf', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid package aliases in Rd file 'esaBcv_package.Rd':
  ‘esaBcv_package-package’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'plyr', 'mvnfast', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'plyr', 'readODS', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘esreg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'stringr', 'trialr', 'DiagrammeR', 'viridis'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'SuperLearner', 'origami', 'dplyr', 'stringr', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'ROCR', 'sf', 'shiny', 'units'

Packages suggested but not available for checking:
  'colourpicker', 'DT', 'leafem', 'leaflet', 'raster', 'rmarkdown',
  'shinybusy', 'shinydashboard', 'shinyjs', 'testthat', 'tmap',
  'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'terra', 'caTools', 'IRISSeismic', 'shiny', 'rmarkdown',
  'reticulate', 'extraDistr', 'Rcpp'

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘CompAREdesign’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘smoots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'scales', 'reshape2', 'rjags'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'ggplot2', 'readr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'fs', 'ggplot2', 'ggpubr', 'htmltools', 'kableExtra',
  'lubridate', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'readxl', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'igraph', 'js', 'openxlsx', 'qs', 'Rcpp', 'rgl', 'Rvcg',
  'shiny', 'shinyWidgets'

Packages suggested but not available for checking: 'rmarkdown', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bslib', 'datamods', 'ggplot2', 'htmltools', 'phosphoricons',
  'scales', 'shiny', 'shinybusy', 'shinyWidgets'

Packages suggested but not available for checking:
  'officer', 'rvg', 'rio', 'testthat', 'rmarkdown', 'ggthemes',
  'hrbrthemes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'haven', 'rvest'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'plotly', 'ggplot2', 'rio', 'shiny',
  'shinydashboard', 'forecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readr', 'dplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'brms', 'lme4', 'dplyr', 'tidyr', 'ggplot2', 'cowplot'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'igraph', 'qgraph', 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘JGL’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'GA', 'autoimage', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'readr', 'covr', 'testthat', 'vdiffr', 'spelling',
  'lintr', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggh4x', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'AER', 'modelsummary', 'RcppEigen', 'testthat', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'ggplot2', 'testthat'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'PSCBS', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr', 'Hmisc'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ETAS’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.explore', 'spatstat.random', 'Rcpp',
  'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) ETC-package.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:32: Lost braces in \itemize; meant \describe ?
Packages required but not available:
  'cowplot', 'dplyr', 'ggalluvial', 'ggplot2', 'ggridges', 'reshape2'

Packages suggested but not available for checking:
  'broom', 'rmarkdown', 'tidyr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'geometry', 'SNPRelate', 'gdsfmt', 'Rcpp'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'dbplyr', 'downloader', 'fs', 'janitor', 'lubridate',
  'readr', 'rvest', 'usethis', 'xml2'

Packages suggested but not available for checking:
  'RSQLite', 'ggplot2', 'testthat', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'ggplot2', 'dplyr', 'dbplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ff’

Package suggested but not available for checking: ‘RSQLite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found export directive that requires package ‘methods’:
  ‘exportClasses’
Remove all such namespace directives (if obsolete) or ensure that the
DESCRIPTION Depends or Imports field contains ‘methods’.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'ggplot2', 'geepack'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'urltools', 'dplyr', 'rvest'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'brainGraph', 'energy', 'fda.usc', 'igraph', 'NetworkDistance', 'TDA'

Packages suggested but not available for checking:
  'MLmetrics', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'fixest', 'marginaleffects'

Packages suggested but not available for checking:
  'did', 'modelsummary', 'gt', 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppParallel', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tidyr', 'xslt', 'dplyr', 'xml2', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'stringr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'shiny', 'shinydashboard', 'shinyWidgets',
  'htmltools', 'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'GenSA', 'polyclip', 'polylabelr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'xml2', 'tidyr', 'rvest', 'stringr', 'readr', 'pdftools'

Packages suggested but not available for checking:
  'rmarkdown', 'tidytext', 'wordcloud', 'ggplot2', 'ggiraph',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'lubridate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'memoise', 'stringr', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'plyr', 'dplyr', 'urltools', 'xml2', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'tidyr', 'readr'
Packages required but not available: 'shiny', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'classInt', 'digest', 'dplyr', 'ISOweek', 'lubridate', 'readr',
  'RefManageR', 'regions', 'stringi', 'stringr', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'giscoR', 'rmarkdown', 'sf', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'inaparc', 'ppclust', 'FRESA.CAD', 'NMF', 'Rtsne', 'uwot'
checkRd: (-1) FuzzyCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "fcm {ppclust}"
       |                                                       ^
checkRd: (-1) pamCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "pam {cluster}"
       |                                                       ^
Running examples in ‘Evacluster-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: FuzzyCluster
> ### Title: Fuzzy C-means Clustering Algorithm
> ### Aliases: FuzzyCluster
> 
> ### ** Examples
> 
> library(datasets)
> data(iris)
> 
> rndSamples <- sample(nrow(iris),100)
> trainData <- iris[rndSamples,]
> testData <- iris[-rndSamples,]
> 
> cls <- FuzzyCluster(trainData[,1:4],3)
Error in loadNamespace(x) : there is no package called ‘inaparc’
Calls: FuzzyCluster ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Found the following significant warnings:

  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Packages required but not available:
  'dplyr', 'caret', 'e1071', 'gbm', 'ggdist', 'ggplot2', 'ggthemes',
  'glmnet', 'grf', 'haven', 'rqPen', 'scales', 'bartCause',
  'SuperLearner'

Packages suggested but not available for checking:
  'furrr', 'rmarkdown', 'testthat', 'bartMachine', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tufte'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'car', 'dplyr', 'ggcorrplot', 'ggplot2', 'kSamples', 'reshape2'

Package suggested but not available for checking: ‘pander’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'testthat'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'MetaUtility', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pRecipe', 'lubridate', 'raster'

Packages suggested but not available for checking:
  'rmarkdown', 'ggpubr', 'spelling', 'kableExtra', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘EnvStats’

Packages suggested but not available for checking:
  'rmarkdown', 'SpatialExtremes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FNN’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'plyr'

Package suggested but not available for checking: ‘kernlab’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘interp’
checkRd: (-1) uccle.Rd:23: Lost braces
    23 |   L'intensit\'{e} maximale des pr\'{e}cipitations en Belgique.
       |               ^
checkRd: (-1) uccle.Rd:23: Lost braces
    23 |   L'intensit\'{e} maximale des pr\'{e}cipitations en Belgique.
       |                                    ^
checkRd: (-1) uccle.Rd:24: Lost braces
    24 |   \emph{Inst. Royal M\'{e}t\'{e}or. Belgique, B} \bold{86}.
       |                        ^
checkRd: (-1) uccle.Rd:24: Lost braces
    24 |   \emph{Inst. Royal M\'{e}t\'{e}or. Belgique, B} \bold{86}.
       |                              ^
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'imputeTS', 'forecast', 'ggplot2'

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manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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  'readr', 'shiny', 'miniUI'

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Skipping checking math rendering: package 'V8' unavailable
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) calculateGLR.Rd:43: Escaped LaTeX specials: \&
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     5 |   Conducts a generalized likelihood ratio test testing whether {\eqn{\beta \in}  (-\code{c},\code{c})}. Covariates can be accommodated.
       |                                                                ^
checkRd: (-1) glr.Rd:34: Lost braces
    34 |   This is a similar function to the main function \code{evian}. Instead of testing H0: \eqn{\beta}=0, it tests for whether H0:{\eqn{\beta \in} (-\code{c},\code{c})}.
       |                                                                                                                               ^
Skipping checking math rendering: package 'V8' unavailable
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'Rcpp', 'RcppArmadillo', 'doRNG', 'tidyr', 'MLmetrics',
  'stringi', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'cowplot'

Packages suggested but not available for checking:
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) fmgammagpd.Rd:183: Lost braces; missing escapes or markup?
   183 |  \item {nlumgammagpd} and {proflumgammagpd} - \code{c(mgshape, mgscale, mgweight[1:(M-1)], sigmau, xi)}
       |                           ^
checkRd: (-1) fmgammagpdcon.Rd:181: Lost braces; missing escapes or markup?
   181 |  \item {nlumgammagpdcon} and {proflumgammagpdcon} - \code{c(mgshape, mgscale, mgweight[1:(M-1)], xi)}
       |                              ^
checkRd: (-1) kernels.Rd:87: Lost braces
    87 | code{\link[evmix:kernels]{kd*}}  and \code{\link[evmix:kernels]{kp*}} give the
       |     ^
Skipping checking math rendering: package 'V8' unavailable
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'Rcpp', 'RcppArmadillo'

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  'dplyr', 'testthat', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
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Packages suggested but not available for checking: 'rmarkdown', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'patchwork', 'treeio', 'Rtsne', 'devtools'

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'tidyr'

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/evtree.Rcheck/00install.out’ for details.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'reticulate', 'scales', 'tidyr'

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'dplyr', 'rmarkdown', 'testthat', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
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Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Packages suggested but not available for checking:
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppRoll', 'RcppArmadillo'

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'crch', 'brms', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
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  'shinycssloaders', 'kableExtra', 'rio'

Packages suggested but not available for checking:
  'rmarkdown', 'htmltools', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘forecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'tidyverse', 'reshape2', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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checkRd: (-1) ccF.Rd:5: Escaped LaTeX specials: \&
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    42 | CALI\'{N}SKI, T.; CORSTEN, L. C. A. Clustering
       |       ^
checkRd: (-1) ccF.Rd:41: Lost braces
    41 | CALI\'{N}SKI, T.; CORSTEN, L. C. A. Clustering
       |       ^
Packages required but not available:
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'huxtable', 'scales', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
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Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'flexsurv', 'ggplot2', 'Rcpp', 'RcppParallel', 'rms',
  'rstan', 'rstantools', 'scales', 'SHELF', 'stringr', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking:
  'rmarkdown', 'bookdown', 'rjags', 'R2jags', 'shiny', 'shinyWidgets',
  'shinycssloaders', 'shinyjs', 'shinyMatrix', 'shinybusy', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DESeq2', 'ggplot2', 'ggsci', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'ggplot2', 'schemr'

Packages suggested but not available for checking: 'EBImage', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cvms', 'dplyr', 'egg', 'ggplot2', 'ggpmisc', 'ggpubr', 'plotly',
  'tidyr'

Packages suggested but not available for checking:
  'cowplot', 'mlr3', 'mlr3learners', 'broom', 'iml', 'mlr3viz',
  'plotROC', 'reshape2', 'ranger', 'precrec'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CORElearn', 'semiArtificial'

Package suggested but not available for checking: ‘e1071’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'ggplot2', 'ggridges', 'lemon', 'mediation', 'shiny',
  'shinydashboard', 'weights'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'ggplot2', 'rmarkdown', 'shiny', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'DT', 'dplyr', 'tidyr', 'ggplot2', 'scatterD3'

Packages suggested but not available for checking:
  'FactoMineR', 'ade4', 'GDAtools', 'quanteda', 'quanteda.textmodels',
  'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Skipping checking math rendering: package 'V8' unavailable
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  'officer', 'rvg', 'flextable', 'rgl', 'xml2', 'openxlsx', 'broom',
  'devEMF'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

Packages suggested but not available for checking:
  'qpdf', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'rnaturalearth', 'sf'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'blockmodels', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘forecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlTable’

Packages suggested but not available for checking:
  'DT', 'htmltools', 'rmarkdown', 'repr', 'ggplot2', 'testthat',
  'openxlsx', 'fst', 'huxtable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'dtplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
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Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘optimx’

Packages suggested but not available for checking:
  'ggplot2', 'SuppDists', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'scales', 'testthat', 'tidyr',
  'viridis'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available: 'sf', 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) MatIn.Rd:6: Lost braces
     6 | Computation of aggregation matrices for generalized interactions that are used in code{\link{extRC}} to estimate extended RC models.
       |                                                                                       ^
checkRd: (-1) plot.Rd:5: Lost braces
     5 | \description{It plots the output of code{\link{extRC}} function for a vector of lambda values.}
       |                                         ^
checkRd: (-1) print.Rd:5: Lost braces
     5 | \description{Given the output of code{\link{extRC}} function, it is written in a readable form.}
       |                                      ^
checkRd: (-1) summary.Rd:5: Lost braces
     5 | \description{Summary method for the output of code{\link{extRC}} function.}
       |                                                   ^
Packages required but not available: 'copula', 'nloptr', 'fda'

Packages suggested but not available for checking: 'fields', 'extraDistr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘copula’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Lmoments’

Package suggested but not available for checking: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lmomco', 'extRemes'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gWidgets2', 'gWidgets2tcltk'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'doRNG', 'dplyr', 'ggplot2', 'lubridate', 'Rcpp', 'tidyr',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'exuberdata', 'rmarkdown', 'spelling', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'openxlsx', 'reshape2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringi', 'stringr', 'readr', 'intervals'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'ggplot2', 'tidyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fs', 'Rcpp', 'stringr', 'tidyr', 'ggplot2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'eyedata', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyr’

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'broom', 'broom.mixed', 'ggplot2', 'tidyr'

Packages suggested but not available for checking:
  'lme4', 'glmmTMB', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'plyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'forestmodel', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'covr', 'furrr', 'future', 'prettydoc', 'rmarkdown', 'roxygen2',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'drc', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'readxl', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'GGally', 'scales'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nloptr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'lubridate'

Packages suggested but not available for checking:
  'covr', 'DT', 'e1071', 'ggrepel', 'miniUI', 'rmarkdown', 'ROCR',
  'shiny', 'testthat', 'tidyr', 'tsibble', 'tsibbledata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'car', 'ggplot2', 'lme4', 'plyr', 'reshape2', 'scales', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'ggplot2', 'ggridges', 'shiny', 'shinydashboard', 'weights'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'e1071', 'GA', 'gbm', 'optimx', 'glmnet', 'ROCR', 'BiocStyle'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'yardstick', 'rsample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reticulate', 'memoise', 'janitor', 'dplyr', 'tidyr', 'cachem'

Packages suggested but not available for checking:
  'ggplot2', 'httptest', 'rmarkdown', 'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'NMF', 'rgl', 'reshape2', 'doRNG'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fabletools', 'ATAforecasting', 'dplyr', 'tsibble', 'distributional',
  'tsbox', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'fabletools', 'tsibble', 'lubridate', 'prophet', 'dplyr',
  'distributional'

Packages suggested but not available for checking:
  'tsibbledata', 'testthat', 'ggplot2', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fabletools', 'Rcpp', 'dplyr', 'tsibble', 'tidyr', 'distributional'

Packages suggested but not available for checking:
  'covr', 'feasts', 'forecast', 'rmarkdown', 'spelling', 'testthat',
  'tsibbledata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tsibble', 'ggplot2', 'dplyr', 'tidyr', 'distributional', 'progressr'

Packages suggested but not available for checking:
  'covr', 'fable', 'future', 'future.apply', 'feasts', 'rmarkdown',
  'spelling', 'testthat', 'tsibbledata', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'mvnfast', 'extraDistr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘htmltools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'usethis', 'stringr', 'tidyr', 'janitor', 'fs', 'readr',
  'readxl', 'haven', 'lubridate', 'digest', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages required but not available: 'dplyr', 'stringr', 'snakecase'

Packages suggested but not available for checking:
  'magick', 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RobStatTM’

Packages suggested but not available for checking: 'PCRA', 'rugarch', 'HH'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'R.cache', 'RobStatTM'

Packages suggested but not available for checking: 'HH', 'R.rsp', 'rugarch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'dplyr', 'rmarkdown'
Package required but not available: ‘rARPACK’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ade4', 'ggplot2', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dendextend', 'FactoMineR', 'ggpubr', 'reshape2',
  'ggrepel', 'tidyr'

Packages suggested but not available for checking: 'ade4', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FactoMineR', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'DT', 'ggplot2', 'ggrepel'

Packages suggested but not available for checking: 'missMDA', 'Factoshiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘partitions’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stochvol', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'roxygen2', 'rmarkdown', 'ggplot2'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'FactoMineR', 'shiny', 'FactoInvestigate', 'ggplot2', 'DT',
  'colourpicker', 'ggrepel', 'shinydashboard', 'shinyjqui', 'missMDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'iml'

Packages suggested but not available for checking:
  'testthat', 'caret', 'covr', 'mlr3', 'mlr3cluster', 'rmarkdown',
  'FuzzyDBScan', 'factoextra', 'patchwork', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caTools’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RProtoBuf’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'MFPCA', 'fpc', 'fda', 'fda.usc', 'funData'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RSpectra', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xml2', 'tableone', 'tidyr', 'dplyr', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) happy.Rd:14: Lost braces
    14 |                  code{Pretty happy} <  \code{Very happy}}
       |                      ^
Package suggested but not available for checking: ‘testthat’
Running ‘test_all.R’ [0s/0s]
Running the tests in ‘tests/test_all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ranger', 'igraph', 'ggplot2', 'cowplot', 'scales'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'rticles', 'magick', 'ggraph', 'pdftools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'tidyjson', 'igraph', 'dplyr', 'jsonld'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

Packages suggested but not available for checking: 'cccp', 'CVXR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DALEX', 'ggplot2', 'scales', 'patchwork'

Packages suggested but not available for checking:
  'ranger', 'gbm', 'rmarkdown', 'covr', 'testthat', 'spelling',
  'ggdendro', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'devtools', 'e1071', 'ggplot2', 'pROC'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘igraph’

Packages suggested but not available for checking:
  'cleanr', 'covr', 'devtools', 'hunspell', 'lintr', 'pkgload',
  'rasciidoc', 'rmarkdown', 'roxygen2', 'spelling', 'testthat',
  'usethis'

VignetteBuilder package required for checking but not installed: ‘rasciidoc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'huge', 'igraph'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'lubridate', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'pkgdown', 'rmarkdown', 'sf', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'LipidMS', 'rmarkdown', 'accucor', 'scales', 'tidyr', 'plyr',
  'gplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following significant warnings:

  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
simfam        7.095  0.000   7.455
plot.penmodel 4.344  0.004   5.139
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'DepthProc'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'BART', 'CORElearn', 'e1071', 'Ecdat', 'fastcluster', 'fastglm',
  'ggplot2', 'glmnet', 'isotree', 'laGP', 'qvalue', 'randomForestSRC',
  'ranger', 'rmarkdown', 'scales', 'testthat', 'xml2', 'xgboost'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Familias.Rcheck/00install.out’ for details.
Package required but not available: ‘reshape’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'lubridate', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'plyr', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘future’

Packages suggested but not available for checking:
  'future.batchtools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘CompQuadForm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) pi0FAMT.Rd:18: Lost braces
    18 | \code{pi0}{The estimated proportion \code{pi0} of null hypotheses.}}
       |           ^
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'sensitivity', 'igraph'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘shiny’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'digest', 'ggfun', 'SSEparser', 'yulab.utils'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'RJSONIO', 'plyr', 'classInt'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sem', 'mirt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readr', 'stringi'

Packages suggested but not available for checking: 'OpenML', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'shiny', 'miniUI', 'shinyWidgets', 'Benchmarking', 'shinycssloaders',
  'readr', 'dplyr', 'DT'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dbplyr', 'dplyr', 'tidyr', 'readr', 'stringr', 'lubridate'

Packages suggested but not available for checking:
  'RPostgres', 'duckdb', 'rmarkdown', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/farver.Rcheck/00install.out’ for details.
Packages required but not available: 'Rcpp', 'RcppParallel'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'fMultivar', 'ecodist', 'energy'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'e1071', 'ggplot2', 'lubridate', 'openxlsx', 'plyr',
  'RcppRoll', 'scales', 'tidyhydat', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RSpectra', 'RcppArmadillo'

Packages suggested but not available for checking:
  'invertiforms', 'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'reticulate', 'ggplot2', 'ggpubr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘adaptivetau’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fastcluster.Rcheck/00install.out’ for details.
Packages required but not available: 'bindata', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'fastglm', 'forecast', 'glmnet', 'Rcpp', 'RcppArmadillo', 'testthat'

Packages suggested but not available for checking:
  'breakfast', 'cpm', 'ecp', 'fpop', 'ggplot2', 'lubridate', 'mcp',
  'mosum', 'rmarkdown', 'stepR', 'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Documented arguments not in \usage in Rd file 'kkk.Rd':
  ‘Vector’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Skipping checking math rendering: package 'V8' unavailable
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fastdigest.Rcheck/00install.out’ for details.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'raster', 'wk', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'sf', 'spelling', 'geos'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lme4', 'cAIC4', 'dplyr', 'refund', 'stringr', 'ggplot2', 'Rfast',
  'lmeresampler'

Packages suggested but not available for checking: 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RobustGaSP', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'OpenImageR', 'RcppArmadillo'

Packages suggested but not available for checking:
  'reticulate', 'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'MatrixExtra', 'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'bigmemory', 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'caret', 'e1071'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'dplyr', 'caret', 'timeROC', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rARPACK’

Packages suggested but not available for checking: 'coxKM', 'SKAT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RSpectra', 'fields'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'spelling', 'ngspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'stringi', 'Rcpp', 'dplyr', 'RcppArmadillo', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RcppNumerical', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fastmap.Rcheck/00install.out’ for details.
Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fastMatMR.Rcheck/00install.out’ for details.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'igraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'plyr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'readr', 'rmarkdown', 'rvest', 'tidyr', 'scales',
  'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mosaic', 'maxLik', 'dplyr', 'ggplot2', 'miscTools'

Packages suggested but not available for checking:
  'ggformula', 'mosaicCalc', 'tidyr', 'readr', 'faraway', 'Hmisc',
  'DAAG', 'car', 'alr4', 'BradleyTerry2', 'cubature', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'janitor', 'kableExtra', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'igraph', 'RSpectra', 'tidygraph', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'janitor', 'lubridate', 'progressr', 'Rcpp', 'RcppParallel',
  'rvest', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'furrr', 'future', 'ggplot2', 'ggrepel', 'qs', 'rmarkdown',
  'RSQLite', 'stringi', 'testthat', 'usethis', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xgboost’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'ggplot2', 'plater', 'readxl', 'scales', 'shiny',
  'shinyFeedback', 'shinyjs', 'stringr', 'tidyr', 'waiter'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
.run: no visible binding for global variable ‘init’
.run: no visible global function definition for ‘init’
.run: no visible binding for global variable ‘run’
Undefined global functions or variables:
  init run
Note: information on .o files is not available
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'AmesHousing', 'covr', 'ranger', 'rmarkdown', 'shapviz'

Packages which this enhances but not available for checking:
  'lightgbm', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'devtools'
Packages required but not available: 'Rcpp', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'Rtsne', 'uwot', 'ashr', 'Rcpp', 'RcppParallel', 'ggplot2',
  'ggrepel', 'cowplot', 'plotly', 'htmlwidgets', 'RcppArmadillo'

Packages suggested but not available for checking:
  'NNLM', 'Ternary', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘collapse’

Packages suggested but not available for checking:
  'Rfast', 'qs', 'fst', 'roll', 'anytime', 'rmarkdown', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘multgee’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'pheatmap', 'princurve', 'Rtsne', 'som', 'umap'

Packages suggested but not available for checking: 'DESeq2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'dplyr', 'haven', 'rmarkdown', 'testthat', 'tidyr'
Running examples in ‘fauxnaif-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: na_if_in
> ### Title: Convert values to NA
> ### Aliases: na_if_in na_if_not
> 
> ### ** Examples
> 
> x <- sample(c(1:5, 99))
> # We can replace 99...
> # ... explicitly
> na_if_in(x, 99)
[1]  1  4  3 NA  2  5
> # ... by specifying values to keep
> na_if_not(x, 1:5)
[1]  1  4  3 NA  2  5
> # ... or by using a formula
> na_if_in(x, ~ . > 5)
[1]  1  4  3 NA  2  5
> 
> messy_string <- c("abc", "", "def", "NA", "ghi", 42, "jkl", "NULL", "mno")
> # We can replace unwanted values...
> # ... one at a time
> clean_string <- na_if_in(messy_string, "")
> clean_string <- na_if_in(clean_string, "NA")
> clean_string <- na_if_in(clean_string, 42)
> clean_string <- na_if_in(clean_string, "NULL")
> clean_string
[1] "abc" NA    "def" NA    "ghi" NA    "jkl" NA    "mno"
> # ... or all at once
> na_if_in(messy_string, "", "NA", "NULL", 1:100)
[1] "abc" NA    "def" NA    "ghi" NA    "jkl" NA    "mno"
> na_if_in(messy_string, c("", "NA", "NULL", 1:100))
[1] "abc" NA    "def" NA    "ghi" NA    "jkl" NA    "mno"
> na_if_in(messy_string, list("", "NA", "NULL", 1:100))
[1] "abc" NA    "def" NA    "ghi" NA    "jkl" NA    "mno"
> # ... or using a clever formula
> grepl("[a-z]{3,}", messy_string)
[1]  TRUE FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE  TRUE
> na_if_not(messy_string, ~ grepl("[a-z]{3,}", .))
[1] "abc" NA    "def" NA    "ghi" NA    "jkl" NA    "mno"
> 
> # na_if_in() is particularly useful inside dplyr::mutate
> library(dplyr)
Error in library(dplyr) : there is no package called ‘dplyr’
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'crul', 'testthat', 'rmarkdown'
checkRd: (-1) Error-Classes.Rd:107-119: Lost braces
   107 |   \item \code{do_verbose(response, template)} {
       |                                               ^
checkRd: (-1) Error.Rd:33-45: Lost braces
    33 |   \item \code{do(response, mssg)} {
       |                                   ^
Running ‘test-all.R’ [0s/1s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'lme4', 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'tidyr', 'rmarkdown', 'roxygen2', 'covr', 'cowplot',
  'ggExtra', 'broom', 'broom.mixed', 'lmerTest', 'kableExtra', 'readr',
  'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'bvartools', 'MCMCpack', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘interp’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘pbatR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fastglm', 'GenSA', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'paramlink'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) FBN.histogramMaxima.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.histogramMaxima.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.histogramMaxima.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.histogramMaxima.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:40: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Packages required but not available: 'digest', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cubature', 'ks', 'viridis', 'rstanarm'

Packages suggested but not available for checking:
  'BayesFactor', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'fractional', 'ggplot2', 'POSetR', 'Rcpp', 'stringr',
  'tidyr', 'tikzDevice'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'cowplot', 'fields', 'dplyr', 'spatstat.geom', 'Hmisc'

Packages suggested but not available for checking:
  'rmarkdown', 'digest', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'RcppEigen',
  'StanHeaders'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fMultivar’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'DataVisualizations'

Packages suggested but not available for checking:
  'mlpack', 'kernlab', 'dbscan', 'kohonen', 'ADPclust',
  'DatabionicSwarm', 'subspace', 'apcluster', 'pdfCluster',
  'parallelDist', 'plotly', 'ProjectionBasedClustering',
  'GeneralizedUmatrix', 'mstknnclust', 'densityClust', 'energy',
  'tclust', 'Spectrum', 'genie', 'fastcluster', 'reshape2', 'PPCI',
  'clustrd', 'smacof', 'rgl', 'prclust', 'CEC', 'dendextend',
  'VarSelLCM', 'mixtools', 'HDclassif', 'clustvarsel', 'yardstick',
  'rmarkdown', 'igraph', 'leiden', 'clustMixType', 'clusterSim',
  'NetworkToolbox', 'ClusterR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘test2delete.txt’ ‘test2delete2_values.txt’ ‘test2delete_values.txt’
Package required but not available: ‘fields’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Found the following files/directories:
  ‘.Rprofile’
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'CompQuadForm', 'fda'

Packages suggested but not available for checking: 'testthat', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dbscan', 'dplyr', 'fdasrvf', 'furrr', 'ggplot2', 'nloptr',
  'progressr', 'Rcpp', 'tidyr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'fda', 'funData', 'future', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fdapace’

Packages suggested but not available for checking: 'Rcpp', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'fdapace'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'ggplot2', 'doBy'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'rmarkdown'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fdaoutlier.Rcheck/00install.out’ for details.
Packages required but not available: 'Rcpp', 'Hmisc', 'RcppEigen'

Packages suggested but not available for checking:
  'rgl', 'ks', 'rmarkdown', 'minqa', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'fdapace', 'ggplot2', 'golem', 'htmltools', 'shiny',
  'plotly', 'reshape2', 'stringr', 'tidyr', 'bs4Dash', 'shinyWidgets',
  'shinyjs'

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rgl', 'RcppEigen', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'patchwork', 'fdapace', 'FastGP'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fds’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ks', 'RcppArmadillo'

Packages suggested but not available for checking: 'glmnet', 'latex2exp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fields', 'Rcpp', 'tolerance', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'interp', 'plot3Drgl', 'rgl', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'kSamples'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'fda', 'fields', 'ggplot2', 'refund', 'testthat'
Note: skipping ‘FLAM_canada.Rnw’ due to unavailable dependencies:
  'fda', 'fields'
Note: skipping ‘FLAM_fuel.Rnw’ due to unavailable dependencies:
  'fda', 'fields'
Note: skipping ‘FLAM_viscosity.Rnw’ due to unavailable dependencies:
  'fda', 'fields'
Note: skipping ‘density-on-scalar_birth.Rnw’ due to unavailable dependencies:
  'fda', 'fields'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rtdists', 'ggplot2', 'reshape2', 'testthat', 'rmarkdown',
  'ggnewscale', 'ggforce', 'WienR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'arulesViz', 'FactoMineR'

Packages suggested but not available for checking:
  'car', 'caret', 'e1071', 'fds', 'fpc', 'glmnet', 'kohonen',
  'questionr', 'ROCR', 'Rtsne', 'text2vec', 'wordcloud', 'xgboost'

Package which this enhances but not available for checking: ‘NMF’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'forecast', 'gplots', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Fgmutils', 'sqldf', 'randomcoloR', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ade4', 'ape', 'geometry'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'GEOquery', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'MCMCpack', 'qvalue'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) p.fdr.Rd:30: Lost braces
    30 | \item{adjust.method}{A string used to identify the p-value and false discovery rate adjustment method. Defaults to \code{BH}. Options are \code{BH}, \code{BY}, code{Bon},\code{Holm}, \code{Hoch}, and \code{Sidak}.}
       |                                                                                                                                                                     ^
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘rainbow’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DiscreteFDR', 'Rcpp', 'PoissonBinomial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geometry', 'geosphere', 'ptinpoly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fabletools', 'tsibble', 'ggplot2', 'dplyr', 'tidyr', 'scales',
  'lubridate', 'slider'

Packages suggested but not available for checking:
  'tsibbledata', 'rmarkdown', 'testthat', 'covr', 'fable', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking: 'mlr', 'gbm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'spelling', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'digest'

Packages suggested but not available for checking:
  'glmnet', 'xgboost', 'rmarkdown', 'pROC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'clustMixType', 'rmarkdown', 'testthat', 'ClustImpute', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ks’

Packages suggested but not available for checking: 'rgl', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'caret', 'dplyr', 'e1071'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'readr', 'vroom', 'usethis'

Packages suggested but not available for checking:
  'testthat', 'scales', 'rmarkdown', 'fs', 'lubridate', 'ggplot2',
  'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) morse.Rd:40: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:23: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) regMin.Rd:24: Escaped LaTeX specials: \#
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'ggplot2', 'GGally', 'fixest', 'doRNG', 'future',
  'panelView', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'stringr', 'igraph', 'xml2', 'lubridate', 'readr',
  'terra', 'sf'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'testthat', 'usethis', 'styler', 'mapview',
  'rmarkdown', 'leaflet', 'rmapshaper'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'Rcpp', 'scales'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'xml2', 'rvest', 'stringi', 'tidyr', 'tidytext'

Packages suggested but not available for checking: 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'readsdmx'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'gstat', 'automap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plm', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'htmltools', 'miniUI', 'reactable', 'shiny', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fs', 'geojsonsf', 'sf', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'httptest2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'ggplot2', 'sae', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rstan', 'ggplot2', 'ergm', 'reshape2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'scales', 'gganimate', 'ggplot2', 'tourr', 'stringr',
  'ggrepel', 'ggforce', 'tidyr'

Packages suggested but not available for checking:
  'roxygen2', 'covr', 'pkgdown', 'testthat', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nls.multstart’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘haven’

Packages suggested but not available for checking: 'testthat', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages required but not available: 'readr', 'readxl', 'haven'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages required but not available: 'rvest', 'xml2', 'plyr', 'timetk'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'viridis', 'ggplot2', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat', 'xml2'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'car', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggdist', 'ggplot2', 'lubridate', 'scales', 'stringr',
  'tidyr', 'nloptr'

Packages suggested but not available for checking:
  'copula', 'covr', 'rmarkdown', 'roxygen2', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ff.Rcheck/00install.out’ for details.
Packages required but not available:
  'cachem', 'dplyr', 'nflreadr', 'memoise', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'httptest', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ffscrapr', 'nflreadr', 'Rglpk'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'ggridges', 'progressr', 'rmarkdown', 'scales',
  'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'e1071', 'dplyr', 'scales', 'stringr', 'testthat'

Packages suggested but not available for checking: 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'jpmesh', 'raster', 'readr', 'sf', 'stars', 'stringr', 'terra',
  'units', 'xml2'

Packages suggested but not available for checking:
  'covr', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fgeo.tool', 'lubridate', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'fgeo.plot', 'fgeo.x', 'ggplot2', 'readr', 'rmarkdown',
  'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fgeo.tool', 'ggplot2', 'ggrepel', 'stringr'

Packages suggested but not available for checking:
  'covr', 'fgeo.analyze', 'fgeo.x', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fgeo.analyze', 'fgeo.plot', 'fgeo.tool', 'fgeo.x'

Packages suggested but not available for checking:
  'covr', 'DT', 'kableExtra', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr'

Packages suggested but not available for checking:
  'covr', 'fgeo.x', 'roxygen2', 'spelling', 'stringr', 'testthat',
  'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘memoise’

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘devtools’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'splines2', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'JGL', 'fdapace'

Packages suggested but not available for checking: 'fda', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sqldf', 'stringr', 'plyr', 'devEMF', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/FHDI.Rcheck/00install.out’ for details.
Packages required but not available: 'xml2', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'oeli', 'padr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'JADE', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘BSSasymp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'flexsurv', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fs', 'htmltools', 'readr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'ggplot2', 'tidybayes', 'tidyr', 'RcppEigen',
  'RcppNumerical', 'RcppZiggurat'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ape', 'MCMCpack', 'MicrobeDS', 'phyloseq'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'golem', 'shiny', 'htmltools', 'DT', 'shinythemes', 'dplyr',
  'shinyjqui', 'blocksdesign', 'shinycssloaders', 'ggplot2', 'plotly',
  'viridis', 'shinyalert', 'desplot', 'shinyjs'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'interp'

Packages suggested but not available for checking: 'AlphaSimR', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spam’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'future', 'httpuv', 'later', 'reqres', 'stringi'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FIESTAutils', 'gdalraster', 'RSQLite', 'sf', 'sqldf'

Packages suggested but not available for checking:
  'geodata', 'terra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gdalraster', 'mase', 'Rcpp', 'RSQLite', 'sae', 'sf', 'sqldf',
  'terra', 'units'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'usethis', 'emoji', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'magick', 'patchwork'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'scales', 'stringr', 'plyr', 'reshape2'

Packages suggested but not available for checking:
  'rmarkdown', 'tidyverse', 'latex2exp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'microeco', 'ape', 'dplyr', 'tidyr', 'rhdf5'

Packages suggested but not available for checking:
  'seqinr', 'phyloseq', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'fastmap', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'janitor', 'stringi', 'tidyr'

Packages suggested but not available for checking:
  'reticulate', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘cachem’

Packages suggested but not available for checking:
  'arrow', 'readr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'filehash', 'RSQLite'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Packages suggested but not available for checking: 'rmarkdown', 'RSQLite'
Packages suggested but not available for checking: 'io', 'testthat'
Invalid package aliases in Rd file 'filename.Rd':
  ‘filename-package’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available: 'stringr', 'strex', 'stringi'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'KRIS', 'rARPACK'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CVXR', 'Rcpp', 'ROptSpace', 'RSpectra', 'nabor', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'spelling'
'LazyData' is specified without a 'data' directory
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'broman', 'dplyr', 'lubridate', 'stringr', 'tidyr', 'rerddap'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'data.tree', 'shiny', 'shinyWidgets', 'shinyjs', 'shinyBS',
  'rclipboard'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'GGally', 'ggplot2', 'lme4', 'mice', 'pROC',
  'scales', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'Hmisc', 'readr', 'rmarkdown', 'rstan', 'survey', 'survminer',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'bookdown', 'scales', 'socialmixr', 'testthat',
  'xml2', 'ggplot2', 'ggtext', 'rmarkdown', 'usethis', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘testthat’
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'digest', 'lutz'

Packages suggested but not available for checking:
  'future', 'readODS', 'readxl', 'rmarkdown', 'RSQLite', 'testthat',
  'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spectralGraphTopology', 'CVXR'

Packages suggested but not available for checking: 'testthat', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'EML', 'digest', 'hoardr'

Packages suggested but not available for checking: 'testthat', 'crul'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmlwidgets', 'stringr', 'stringi', 'shiny'

Packages suggested but not available for checking:
  'shinyAce', 'shinyWidgets', 'shinyjqui', 'shinyFiles',
  'shinyvalidate', 'fs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'htmlwidgets'

Package suggested but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'arm', 'glmnet', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'reticulate', 'testthat'
Running ‘run-all.R’ [0s/1s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'pdftools', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'tidycensus', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'leaflet', 'htmltools', 'sf', 'ggplot2',
  'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'ggplot2', 'scales'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'diveRsity', 'ape'
Unknown package ‘diveRsity’ in Rd xrefs
Found the following files/directories:
  ‘JSM_MS_genepop.txt’ ‘JSM_popname.txt’ ‘result_DJ.csv’
  ‘result_EBDJ.csv’ ‘result_EBFST.csv’
Packages required but not available:
  'tune', 'dials', 'dplyr', 'ggplot2', 'parsnip', 'tidyr', 'workflows'

Packages suggested but not available for checking:
  'BradleyTerry2', 'covr', 'discrim', 'kknn', 'klaR', 'lme4',
  'modeldata', 'ranger', 'recipes', 'rsample', 'spelling', 'testthat',
  'yardstick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) bitspec.Rd:8: Escaped LaTeX specials: \&
Packages required but not available:
  'Rcpp', 'klaR', 'ggplot2', 'GGally', 'Rcmdr', 'plyr', 'reshape',
  'rgl', 'scales', 'car', 'RcppGSL'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spectralGraphTopology’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sdprisk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'igraph', 'yahoofinancer'
checkRd: (-1) fun-igraph_financial.Rd:34: Lost braces; missing escapes or markup?
    34 | The same result for both \code{igraph} and {igraph_financial} objects
       |                                            ^
checkRd: (-1) igraph_E_iterators.Rd:31: Lost braces; missing escapes or markup?
    31 | The same result for both \code{igraph} and {igraph_financial} objects
       |                                            ^
checkRd: (-1) igraph_v_iterators.Rd:29: Lost braces; missing escapes or markup?
    29 | The same result for both \code{igraph} and {igraph_financial} objects
       |                                            ^
checkRd: (-1) plot_igraph-methods.Rd:22: Lost braces
    22 | Methods to extend code{igraph}'s plotting functions to \code{igraph_financial} objects
       |                       ^
checkRd: (-1) plot_igraph-methods.Rd:19: Lost braces; missing escapes or markup?
    19 | For both \code{igraph} and {igraph_financial} objects, returns NULL invisibly. It is called to print the graph to any R device. (see method and \href{https://rdrr.io/cran/igraph/man/plot.igraph.html}{igraph::plot.igraph})
       |                            ^
Running examples in ‘FinNet-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: FF.graph
> ### Title: Easily represent a firm-firm (FF) network using the package
> ###   'igraph'
> ### Aliases: FF.graph
> 
> ### ** Examples
> 
> # Create a nice graph representation of the binary FF of
> # Berkshire Hataway's holdings based on common ownership
> data("firms_BKB")
> x <- FF.naive.ownership(firms_BKB)
> FF.graph(x = x, aesthetic = 'nice')
Error in loadNamespace(x) : there is no package called ‘igraph’
Calls: FF.graph ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘workflow-igraph_financial.Rmd’ using knitr

Quitting from lines 70-72 [workflow_4] (workflow-igraph_financial.Rmd)
Error: processing vignette 'workflow-igraph_financial.Rmd' failed with diagnostics:
there is no package called 'igraph'
--- failed re-building ‘workflow-igraph_financial.Rmd’

SUMMARY: processing the following file failed:
  ‘workflow-igraph_financial.Rmd’

Error: Vignette re-building failed.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'modeltime', 'Cubist', 'dials', 'digest', 'dplyr', 'feasts', 'fs',
  'glmnet', 'hts', 'kernlab', 'lubridate', 'parsnip', 'plyr',
  'recipes', 'rsample', 'rules', 'snakecase', 'stringr', 'tidyr',
  'timetk', 'tune', 'vroom', 'workflows'

Packages suggested but not available for checking:
  'arrow', 'AzureStor', 'Boruta', 'corrr', 'qs', 'reactable',
  'rmarkdown', 'sparklyr', 'testthat', 'vip'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'dplyr', 'rvest', 'XBRL'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘e1071’
Packages suggested but not available for checking:
  'testthat', 'mockery', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'shiny', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'twinning'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'dm', 'ggplot2', 'tidyr', 'DiagrammeRsvg',
  'DiagrammeR'
Packages required but not available: 'ggplot2', 'plyr'

Packages suggested but not available for checking: 'testthat', 'aricode'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'TMB'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fishMod.Rcheck/00install.out’ for details.
Packages required but not available:
  'ape', 'fishtree', 'geiger', 'phytools', 'rfishbase', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘respirometry’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'golem', 'sf', 'shiny', 'shinyBS', 'shinyjs',
  'shinyWidgets', 'viridis'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'memoise'

Packages suggested but not available for checking:
  'diversitree', 'geiger', 'hisse', 'phytools', 'picante', 'rfishbase',
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'downloader', 'stringr', 'dplyr', 'tidyr', 'scales'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'rfishbase', 'rnaturalearth', 'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'janitor', 'lubridate', 'tidyr'

Packages suggested but not available for checking:
  'devtools', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'ggthemes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'patchwork', 'viridis', 'scales', 'ggthemes',
  'varian', 'paletteer', 'leaflet', 'sf', 'leafgl', 'raster', 'terra',
  'rayshader', 'reshape2'

Packages suggested but not available for checking:
  'CopernicusDEM', 'testthat', 'rmarkdown', 'DT', 'rgl', 'magick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) fitConic.Rd:66-73: Lost braces
    66 | \code{parA }{vector of the six "ABCDEF" coefficients
       |             ^
checkRd: (-1) fitConic.Rd:67: Lost braces
    67 | \code{RSS }{'root sum square' figure of merit describing the relative fit quality}
       |            ^
checkRd: (-1) fitConic.Rd:68: Lost braces
    68 | \code{iters }{number of iterations at convergence}
       |              ^
checkRd: (-1) fitConic.Rd:69-71: Lost braces
    69 | \code{exitCode }{1 means ellipse, 2 means hyperbola, 3 means parabola.
       |                 ^
checkRd: (-1) rotateA.Rd:59: Lost braces; missing escapes or markup?
    59 | For \code{xyrot} {a Nx2 array of the x,y coordinates of the rotated data set. }
       |                  ^
Packages suggested but not available for checking:
  'rgenoud', 'mc2d', 'ggplot2', 'rmarkdown', 'Hmisc', 'bookdown'
Running examples in ‘fitdistrplus-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CIcdfplot
> ### Title: Empirical cumulative distribution function with pointwise
> ###   confidence intervals on probabilities or on quantiles
> ### Aliases: CIcdfplot
> ### Keywords: distribution
> 
> ### ** Examples
> 
> # We choose a low number of bootstrap replicates in order to satisfy CRAN running times
> # constraint.
> # For practical applications, we recommend to use at least niter=501 or niter=1001.
> 
> if (requireNamespace ("ggplot2", quietly = TRUE)) {ggplotEx <- TRUE}
> 
> # (1) Fit of an exponential distribution
> #
> 
> set.seed(123)
> s1 <- rexp(50, 1)
> f1 <- fitdist(s1, "exp")
> b1 <- bootdist(f1, niter= 11) #voluntarily low to decrease computation time
> 
> # plot 95 percent bilateral confidence intervals on y values (probabilities)
> CIcdfplot(b1, CI.level= 95/100, CI.output = "probability")
> if (ggplotEx) CIcdfplot(b1, CI.level= 95/100, CI.output = "probability", plotstyle = "ggplot")
Error: object 'ggplotEx' not found
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ICSNP’

Packages suggested but not available for checking:
  'ggplot2', 'reshape2', 'rmarkdown', 'R.rsp', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'R.rsp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'furrr', 'future.apply', 'ggplot2', 'plotly', 'Rfast',
  'simlandr', 'tidyr'

Package suggested but not available for checking: ‘future’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) fitmixEM.Rd:51: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'flextable', 'ggplot2', 'ggthemes', 'reshape2', 'rmarkdown',
  'spelling', 'testthat', 'viridis'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'ggplot2', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘fitode.Rnw’ using knitr

Quitting from lines 72-75 [pkgversions] (fitode.Rnw)
Error: processing vignette 'fitode.Rnw' failed with diagnostics:
there is no package called 'ggplot2'
--- failed re-building ‘fitode.Rnw’

SUMMARY: processing the following file failed:
  ‘fitode.Rnw’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘car’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘devEMF’
Packages required but not available: 'dplyr', 'Hmisc', 'ks', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'DT', 'shiny', 'dplyr', 'maxLik'

Packages suggested but not available for checking:
  'BiasedUrn', 'emdbook', 'EnvStats', 'ExtDist', 'flexsurv', 'gld',
  'GLDEX', 'hermite', 'mc2d', 'nCDunnett', 'QRM', 'ReIns', 'reliaR',
  'revdbayes', 'SMR', 'STAR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'e1071', 'ggplot2', 'shiny', 'miniUI', 'DT'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'readr', 'rvest', 'stringr', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'elo', 'ggplot2', 'rmarkdown', 'testthat', 'roxygen2',
  'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'tidyr', 'readr', 'stringr', 'broom',
  'rmarkdown', 'patchwork', 'fivethirtyeightdata'
checkRd: (-1) food_world_cup.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:75: Lost braces in \itemize; meant \describe ?
Package unavailable to check Rd xrefs: ‘fivethirtyeightdata’
Running examples in ‘fivethirtyeight-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ahca_polls
> ### Title: American Health Care Act Polls
> ### Aliases: ahca_polls
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # To convert data frame to tidy data (long) format, run:
> library(dplyr)
Error in library(dplyr) : there is no package called ‘dplyr’
Execution halted
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'rmarkdown', 'rb3', 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BayesFactor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'cubature', 'rmarkdown', 'qpdf'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘tidyr’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'dreamerr'

Packages suggested but not available for checking:
  'rmarkdown', 'plm', 'pander', 'ggplot2', 'pdftools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'stringi', 'lubridate', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘raster’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'NFCP'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'rARPACK', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mlr’

Packages suggested but not available for checking:
  'devtools', 'e1071', 'ggplot2', 'lhs', 'plotly', 'plyr', 'RANN',
  'R.rsp', 'shiny', 'smoof', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'tidyr', 'eurostat', 'rmarkdown', 'testthat'
Running examples in ‘flagr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: flag_divide
> ### Title: Assignment of the weights for the multiple flags
> ### Aliases: flag_divide
> 
> ### ** Examples
> 
> flags <- tidyr::spread(test_data[, c(1:3)], key = time, value = flags)
Error in loadNamespace(x) : there is no package called ‘tidyr’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'glmnet', 'gmp'

Packages suggested but not available for checking:
  'mice', 'rmarkdown', 'testthat', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2', 'ggforce'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'RcppGSL'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) flashClust.Rd:92: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ebnm', 'dplyr', 'stringr', 'tidyr', 'ggplot2'

Packages suggested but not available for checking:
  'ashr', 'cowplot', 'testthat', 'rmarkdown', 'RcppML'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cowplot', 'dplyr', 'ggplot2', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'memoise', 'revealjs', 'rmarkdown', 'testthat'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr', 'readxl', 'stringr'

Packages suggested but not available for checking:
  'pander', 'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘usethis’

Packages suggested but not available for checking:
  'mockery', 'covr', 'fs', 'rmarkdown', 'testthat', 'pkgload'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'SuperLearner', 'dplyr', 'caret', 'kernlab', 'ranger'

Packages suggested but not available for checking:
  'vimp', 'testthat', 'rmarkdown', 'mice', 'xgboost', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) cclust.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) randIndex.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) vacmot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) vacmot.Rd:28: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ContaminatedMixt’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bslib', 'htmltools', 'htmlwidgets', 'rmarkdown', 'sass', 'scales',
  'shiny'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'rmarkdown', 'mirt'
checkRd: (-1) fmp.Rd:45: Lost braces; missing escapes or markup?
    45 | If k = 0: (xi_1, ..., x_{C_i - 1}, omega)
       |                         ^
checkRd: (-1) fmp.Rd:47: Lost braces; missing escapes or markup?
    47 | If k = 1: (xi_1, ..., x_{C_i - 1}, omega, alpha1, tau1)
       |                         ^
checkRd: (-1) fmp.Rd:49: Lost braces; missing escapes or markup?
    49 | If k = 2: (xi_1, ..., x_{C_i - 1}, omega, alpha1, tau1, alpha2, tau2)
       |                         ^
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'Ecdat', 'glmnet', 'lme4', 'SuppDists'
Running examples in ‘flexmix-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: FLXMRglmnet
> ### Title: FlexMix Interface for Adaptive Lasso / Elastic Net with GLMs
> ### Aliases: FLXMRglmnet FLXMRglmnet-class
> ### Keywords: regression cluster
> 
> ### ** Examples
> 
>     set.seed(12)
>     p <- 10
>     beta <- matrix(0, nrow = p + 1, ncol = 2)
>     beta[1,] <- c(-1, 1)
>     beta[cbind(c(5, 10), c(1, 2))] <- 1
> 
>     nobs <- 100
>     X <- matrix(rnorm(nobs * p), nobs, p)
>     mu <- cbind(1, X) %*% beta
>     z <- sample(1:ncol(beta), nobs, replace = TRUE)
>     y <- mu[cbind(1:nobs, z)] + rnorm(nobs)
>     data <- data.frame(y, X)
>     ## The maximum number of iterations is reduced to
>     ## avoid a long running time.
>     fo <- sample(rep(seq(10), length = nrow(data)))
>     ex1 <- flexmix(y ~ ., data = data, k = 2, cluster = z,
+                    model = FLXMRglmnet(foldid = fo),
+                    control = list(iter.max = 2))
Error in loadNamespace(x) : there is no package called ‘glmnet’
Calls: flexmix ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘GJRM’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'sf'

Packages suggested but not available for checking:
  'testthat', 'stringr', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'bayesplot', 'ggplot2',
  'RcppParallel', 'RcppEigen', 'StanHeaders'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Epi’

Packages suggested but not available for checking:
  'relsurv', 'mexhaz', 'ggplot2', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'smerc', 'spdep', 'spatialreg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flexdashboard', 'htmltools', 'htmlwidgets', 'rmarkdown'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flexsurv’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstpm2', 'tidyr', 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'flexsurvcure', 'survminer', 'lubridate', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rmarkdown', 'htmltools', 'ragg', 'officer', 'gdtools', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'magick', 'equatags', 'ggplot2', 'scales', 'doconv',
  'tables', 'broom', 'broom.mixed', 'lme4', 'bookdown', 'pdftools',
  'officedown', 'pkgdown', 'webshot2', 'svglite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'survminer', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

Packages suggested but not available for checking: 'sf', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'bazar', 'pryr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'geosphere', 'ggplot2', 'ggrepel', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'parzer', 'rvest'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'testthat', 'RcppArmadillo'

Package suggested but not available for checking: ‘devtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'tidyr', 'stringi', 'rmarkdown'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr', 'stringi'

Packages suggested but not available for checking:
  'bookdown', 'devtools', 'multipanelfigure', 'pander', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cherry', 'e1071', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dials', 'ggplot2', 'Rcpp', 'rgenoud', 'usethis'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'htmltools', 'htmlwidgets', 'interp', 'plotly',
  'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gplots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TLMoments', 'copula'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'survcomp', 'reshape', 'dplyr', 'glmnet', 'caret',
  'doRNG', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'testthat', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'dplyr', 'fastshap', 'furrr', 'future', 'readr', 'rjson',
  'rsample', 'stringr', 'tidyr', 'vip'

Packages suggested but not available for checking:
  'adabag', 'arm', 'bartMachine', 'bst', 'C50', 'caTools', 'Cubist',
  'e1071', 'evtree', 'gbm', 'ggplot2', 'glmnet', 'hda', 'ipred',
  'keras', 'kernlab', 'kknn', 'klaR', 'kohonen', 'LiblineaR',
  'monomvn', 'penalized', 'penalizedLDA', 'plyr', 'ranger',
  'rmarkdown', 'rrcov', 'rrcovHD', 'RSNNS', 'shapviz', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nomnoml', 'htmlwidgets', 'styler'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'esquisse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) flowdata.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{Flow}{Water flow, in m^{3}/s}
       |                              ^
Packages required but not available: 'params', 'readr'

Packages suggested but not available for checking:
  'reshape2', 'testthat', 'rmarkdown'

Packages which this enhances but not available for checking:
  'ggplot2', 'openxlsx', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'kableExtra', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rstan', 'Rcpp', 'mirt', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'Rcpp', 'RcppParallel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'kableExtra', 'rmarkdown'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'kableExtra', 'rmarkdown'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'EnvStats', 'extraDistr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘forecast’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'PsychWordVec', 'reticulate', 'text', 'stringr', 'plyr', 'dplyr',
  'tidyr'

Package suggested but not available for checking: ‘bruceR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fmdates', 'lubridate'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'splines2', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘lubridate’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggparty', 'ggplot2', 'cowplot', 'testthat'

Packages suggested but not available for checking:
  'caret', 'mlr3verse', 'ranger', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘minqa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'sf', 'Rcpp'

Packages suggested but not available for checking:
  'ggplot2', 'ggpolypath', 'inlabru', 'testthat', 'terra', 'tidyterra',
  'rgl', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'caret', 'solitude', 'kernlab', 'C50', 'e1071', 'FactoMineR',
  'dplyr', 'factoextra', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'
Running examples in ‘FMM-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotFMM
> ### Title: Plot fitted FMM models
> ### Aliases: plotFMM
> 
> ### ** Examples
> 
> 
> # Simulates an scenario in which an FMM model is suitable,
> res <- generateFMM(2,3,1.5,2.3,0.1,outvalues = TRUE,sigmaNoise = 0.3, plot=FALSE)
> # then a FMM model is fitted to the data.
> fit <- fitFMM(res$y, lengthAlphaGrid=20,lengthOmegaGrid=12)
> plotFMM(fit)
> 
> # Components plot of FMM Model fitted to neuronal data with various optional aesthetics
> data("neuronalSpike")
> fittedFMM2<-fitFMM(neuronalSpike, nback=2,
+                    lengthAlphaGrid = 24,lengthOmegaGrid = 10, numReps = 1)
|--------------------------------------------------|
|==================================================|
 Stopped by reaching maximum iterations (2 iteration(s)) 
> 
> plotFMM(fittedFMM2, components = TRUE)
> plotFMM(fittedFMM2, components = TRUE,
+         legendInComponentsPlot = FALSE,
+         textExtra = "Neuronal Data")
> 
> # With ggplot2, customizable plots can be created,
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'tidyr', 'lubridate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) FMP.Rd:30: Lost braces; missing escapes or markup?
    30 | \eqn{m(\theta) = b_0 + b_1 \theta + b_2 \theta^2 + b_3 \theta^3}. Acceptable values of k = {0,1,2,3}. According to 
       |                                                                                            ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'reshape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RNifti', 'ggplot2', 'reshape2', 'tidyr', 'RcppEigen', 'imager'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘oro.nifti’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cellWise', 'e1071'

Packages suggested but not available for checking:
  'cowplot', 'ciftiTools', 'gifti', 'rmarkdown', 'RNifti', 'ggplot2',
  'oro.nifti', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ciftiTools', 'gifti', 'rmarkdown', 'RNifti', 'oro.nifti',
  'templateICAr', 'gsignal', 'testthat', 'covr', 'fda'
Running ‘run_fMRItools_tests.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/run_fMRItools_tests.R’ failed.
Complete output:
  > # Build --> Install and Restart
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘Epi’
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) Estable.Rd:40: Lost braces
    40 |   \code{dEstable}{ gives the density function;}
       |                  ^
checkRd: (-1) Estable.Rd:41: Lost braces
    41 |   \code{pEstable}{ gives the distribution function or its complement;}
       |                  ^
checkRd: (-1) Estable.Rd:42: Lost braces
    42 |   \code{qEstable}{ gives quantiles;}
       |                  ^
checkRd: (-1) Estable.Rd:43-56: Lost braces
    43 |   \code{tailsEstable}{ returns a list with the following components
       |                      ^
checkRd: (-1) FMstable.Rd:50: Lost braces
    50 |   \code{dFMstable}{ gives the density function;}
       |                   ^
checkRd: (-1) FMstable.Rd:51: Lost braces
    51 |   \code{pFMstable}{ gives the distribution function or its complement;}
       |                   ^
checkRd: (-1) FMstable.Rd:52: Lost braces
    52 |   \code{qFMstable}{ gives quantiles;}
       |                   ^
checkRd: (-1) FMstable.Rd:53-66: Lost braces
    53 |   \code{tailsFMstable}{  returns a list with the following components
       |                       ^
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'dplyr', 'libr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘cubature’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'igraph'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘chemometrics’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/FNN.Rcheck/00install.out’ for details.
Packages required but not available: 'RANN', 'gmp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rvest', 'xml2'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(folders)
  > 
  > testthat::test_check("folders")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'shiny', 'shiny.semantic', 'htmltools'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

Packages suggested but not available for checking:
  'covr', 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'testthat', 'htmltools'
'LazyData' is specified without a 'data' directory
Running examples in ‘fontquiver-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: htmlFontDependency
> ### Title: Include font as CSS dependency
> ### Aliases: htmlFontDependency
> 
> ### ** Examples
> 
> # Create an htmlDependency object:
> dep <- htmlFontDependency(font_families("Bitstream Vera"))
Loading required namespace: htmltools
Failed with error:  ‘there is no package called ‘htmltools’’
Error: htmltools is not installed
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'ggplot2', 'cowplot', 'stringr', 'tidyr', 'viridis',
  'igraph', 'ggraph', 'minerva'

Packages suggested but not available for checking: 'infotheo', 'minet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'textshaping', 'tidyverse', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'rstan', 'arm', 'reshape2', 'ggplot2', 'bayesplot', 'extraDistr',
  'dplyr', 'tidyverse'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'airportr', 'dplyr'

Packages suggested but not available for checking:
  'devtools', 'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lubridate', 'dplyr', 'plyr', 'stringr', 'reshape2', 'ggplot2',
  'ggplotify', 'scales', 'rvest', 'xml2', 'ggnewscale', 'patchwork'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'readr', 'rmarkdown', 'testthat'
Running examples in ‘forcats-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fct_reorder
> ### Title: Reorder factor levels by sorting along another variable
> ### Aliases: fct_reorder fct_reorder2 last2 first2
> 
> ### ** Examples
> 
> # fct_reorder() -------------------------------------------------------------
> # Useful when a categorical variable is mapped to position
> boxplot(Sepal.Width ~ Species, data = iris)
> boxplot(Sepal.Width ~ fct_reorder(Species, Sepal.Width), data = iris)
> 
> # or with
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘stringi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'filesstrings', 'readr', 'roll', 'stringr'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘reshape2’

Packages suggested but not available for checking: 'psd', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'forecast', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'golem', 'forecast', 'htmltools', 'lubridate', 'stringr',
  'keras', 'shinyjs', 'shinyAce', 'echarts4r', 'htmlwidgets',
  'colourpicker', 'shinydashboard', 'shiny', 'shinycustomloader',
  'shinydashboardPlus'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'thief', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'locits', 'lpacf', 'forecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'lubridate', 'ggplot2', 'future.apply', 'dtplyr'

Packages suggested but not available for checking:
  'glmnet', 'DT', 'rmarkdown', 'xgboost', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'forecTheta', 'rmarkdown', 'rticles', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'decomposedPSF', 'ggplot2', 'imputeTestbench', 'reshape2', 'forecast'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘osqp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘forecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'mispitools', 'dplyr', 'tidyr', 'fbnet', 'hrbrthemes',
  'reshape2', 'paramlink'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'GA', 'ggplot2', 'cowplot', 'scales', 'fields', 'SoilHyP', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'ranger', 'parsnip', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nloptr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'stringr', 'dplyr', 'tidyr', 'ggridges', 'mvnfast', 'sf',
  'sfheaders', 'snakecase', 'yardstick', 'blockCV', 'patchwork'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ars’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'raster', 'spatstat.explore', 'spatstat.geom', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'tidyr', 'ggplot2'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'crosstalk', 'htmltools', 'metalite.ae', 'reactable', 'reactR'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggthemes', 'tidyr', 'broom', 'plyr',
  'systemfit', 'ggpmisc', 'car', 'FinCal', 'scales', 'ggdendro',
  'shiny', 'miniUI'

Packages suggested but not available for checking:
  'rmarkdown', 'formattable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'broom'

Package suggested but not available for checking: ‘labelled’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'gridtext', 'rmarkdown', 'vdiffr', 'testthat', 'covr'
checkRd: (-1) forest_theme.Rd:161: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forest_theme.Rd:162: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forest_theme.Rd:163: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forest_theme.Rd:164: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forest_theme.Rd:165: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forest_theme.Rd:166: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forest_theme.Rd:167: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forest_theme.Rd:168: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forest_theme.Rd:169: Lost braces in \itemize; meant \describe ?
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'dplyr', 'Gmisc', 'Greg', 'rmarkdown', 'rms', 'testthat', 'tidyr',
  'tidyverse'
Running examples in ‘forestplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: forestplot
> ### Title: Draws a forest plot
> ### Aliases: forestplot forestplot.default forestplot.data.frame
> ###   print.gforge_forestplot plot.gforge_forestplot forestplot.grouped_df
> 
> ### ** Examples
> 
> #############################################
> # Simple examples of how to do a forestplot #
> #############################################
> 
> ask <- par(ask = TRUE)
> 
> # A basic example, create some fake data
> row_names <- list(list("test = 1", expression(test >= 2)))
> test_data <- data.frame(
+   coef = c(1.59, 1.24),
+   low = c(1.4, 0.78),
+   high = c(1.8, 1.55)
+ )
> test_data |>
+   forestplot(labeltext = row_names,
+              mean = coef,
+              lower = low,
+              upper = high,
+              zero = 1,
+              cex  = 2,
+              lineheight = "auto",
+              xlab = "Lab axis txt") |>
+   fp_add_header("Group") |>
+   fp_set_style(lines = gpar(col = "darkblue"))
Error: The package dplyr is needed for this function to work. Please install it.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'igraph', 'ggplot2', 'rapportools'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'dplyr', 'viridis', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘data.tree’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'terra', 'sf', 'plyr', 'imager', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nloptr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'reticulate'

Packages suggested but not available for checking:
  'rmarkdown', 'xml2', 'raster', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'metR', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘units’

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'shiny', 'rmarkdown'
Packages required but not available:
  'htmltools', 'htmlwidgets', 'rmarkdown'

Packages suggested but not available for checking:
  'testthat', 'DT', 'shiny', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

Packages suggested but not available for checking:
  'dplyr', 'gt', 'huxtable', 'stringi', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'dplyr', 'ggforce', 'ggplot2', 'onbrand', 'readr',
  'readxl', 'rhandsontable', 'shiny', 'shinyAce', 'shinyWidgets',
  'stringr'

Packages suggested but not available for checking:
  'covr', 'devtools', 'DT', 'flextable', 'ggpubr', 'janitor', 'plotly',
  'prompter', 'rmarkdown', 'shinydashboard', 'shinybusy', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > testthat::test_check("formulaic")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'rmarkdown', 'meta'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Errors in running code in vignettes:
when running code in ‘forplo_vignette.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘forplo_vignette.Rmd’ using ‘UTF-8’... failed to complete the test
Packages suggested but not available for checking:
  'ggplot2', 'ibdsim2', 'scales', 'testthat'
Running examples in ‘forrel-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MPPsims
> ### Title: Missing person power simulations
> ### Aliases: MPPsims
> 
> ### ** Examples
> 
> x = nuclearPed(fa = "Gf", mo = "Gm", children = c("Uncle", "Mother"), sex = 1:2)
> x = addChildren(x, fa = "Father", mo = "Mother", nch = 3, sex = c(1,2,1),
+                 id = c("S1", "S2", "MP"))
Father: Creating new individual with ID = Father
> x = addSon(x, "Father", id = "HS")
Mother: Creating new individual with ID = NN_1
> 
> # Brother S1 is already genotyped with a marker with 4 alleles
> x = addMarker(x, S1 = "1/2", alleles = 1:4)
> 
> # Alternatives for additional genotyping
> sel = list("Father", "S2", "HS", c("Gm", "Uncle"))
> 
> plot(x, marker = 1, hatched = sel)
Warning: Alignment failed; switching to simple DAG alignment
> 
> # Simulate
> simData = MPPsims(x, selections = sel, nProfiles = 2, lrSims = 2)
Selection: Baseline
Selection: Father
Selection: S2
Selection: HS
Selection: Gm, Uncle
Total time used: 0.673 secs
> 
> # Power plot
> powerPlot(simData, type = 3)
Error: This function needs the `ggplot2` package, which does not seem to be available. Please install `ggplot2` and try again.
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Hmisc', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'dplyr'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dbscan', 'Distance', 'htmlwidgets', 'lidR', 'plotly', 'raster',
  'Rcpp', 'RCSF', 'reticulate', 'scales', 'sf', 'tidyr', 'VoxR',
  'vroom', 'RcppEigen'

Packages suggested but not available for checking:
  'devtools', 'kableExtra', 'rmarkdown', 'systemfonts', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'dplyr', 'FactoMineR', 'ggplot2', 'likert', 'rmarkdown', 'tidyr'
Packages required but not available: 'igraph', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ape’

Packages suggested but not available for checking:
  'paleotree', 'rmarkdown', 'devtools', 'TreeSim'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'FossilSim'

Packages suggested but not available for checking: 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘arrow’

Packages suggested but not available for checking:
  'lintr', 'httptest', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) FGf.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FourgameteP.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:38: Lost braces in \itemize; meant \describe ?
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'tidyr', 'ggplot2', 'testthat', 'covr',
  'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘tidyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'testthat', 'gamm4', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'refund'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FNN’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘kernlab’

Packages suggested but not available for checking: 'tclust', 'pdfCluster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'klaR', 'GGally', 'ggplot2', 'ggeasy'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'readr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'dreamerr'

Packages suggested but not available for checking:
  'rmarkdown', 'fixest', 'pdftools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fpop.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fpopw.Rcheck/00install.out’ for details.
Packages required but not available:
  'fAssets', 'fCopulae', 'Rglpk', 'kernlab'

Packages suggested but not available for checking:
  'parma', 'Rsymphony', 'dplR', 'bcp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'expsmooth', 'fma', 'forecast', 'ggplot2'

Packages suggested but not available for checking: 'GGally', 'Mcomp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fable', 'fabletools', 'feasts', 'ggplot2', 'lubridate',
  'tidyr', 'tsibble', 'tsibbledata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'fma', 'expsmooth'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'dplyr', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'ggplot2', 'memoise', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'disordR'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘forecast’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'gstat', 'rmarkdown', 'raster'
Running examples in ‘FracKrigingR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: FracKrig
> ### Title: FracKrig
> ### Aliases: FracKrig
> 
> ### ** Examples
> 
> 
> library(sp)
> library(gstat)
Error in library(gstat) : there is no package called ‘gstat’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'pcaPP', 'RandomFields'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'crqa', 'fields', 'qpdf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'imager', 'plyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘netmeta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2'

Packages suggested but not available for checking: 'dplyr', 'plotly', 'egg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppGSL'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'doBy', 'shiny'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'ggplot2', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lamW’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'janitor', 'lubridate', 'rio', 'readr', 'vroom',
  'fs', 'fastDummies'

Packages suggested but not available for checking:
  'rmarkdown', 'badger', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'cccp', 'Rglpk'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping vignette re-building
Packages suggested but not available for checking: 'e1071', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
checkRd: (-1) summary.frbs.Rd:32: Lost braces
    32 |                           \code{"GAUSSIAN"}, code{"TRIANGLE"}, \code{"TRAPEZOID"}, \code{"SIGMOID"}, and \code{"BELL"}.
       |                                                  ^
checkRd: (-1) summary.frbs.Rd:60: Lost braces; missing escapes or markup?
    60 |          {4.0, 0.23, 0.43, 0.53, 0.73} on its column. It means that the label a.2 of variable v.1 
       |          ^
Errors in running code in vignettes:
when running code in ‘lala2015pmml.Rtex’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘lala2015pmml.Rtex’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'e1071', 'fdadensity', 'fdapace', 'osqp'

Packages suggested but not available for checking:
  'Rcpp', 'testthat', 'igraph', 'mpoly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'partitions', 'disordR'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'plyr', 'freealg'

Packages suggested but not available for checking:
  'rmarkdown', 'permutations', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘smacof’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pkgfilecache', 'xml2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'oro.nifti', 'gifti', 'cifti'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmertree', 'pre', 'WGCNA'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'
Running examples in ‘frenchCurve-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as.data.frame.curve
> ### Title: Conversion to data frame
> ### Aliases: as.data.frame.curve
> 
> ### ** Examples
> 
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Packages required but not available:
  'dplyr', 'tidyr', 'rvest', 'stringr', 'fs', 'readr'

Packages suggested but not available for checking:
  'rmarkdown', 'lubridate', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'fda', 'testthat'
Documented arguments not in \usage in Rd file 'freqdom.transpose.Rd':
  ‘S’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'GGally', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘cubature’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'ggplot2', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'stringr', 'reshape2', 'ggplot2', 'BigVAR'
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > if (packageVersion("testthat") >= "0.7.1.99") {
  + 	library(testthat)
  + 	library(frequencyConnectedness)
  + 	test_check("frequencyConnectedness")
  + }
  Error in packageVersion("testthat") : 
    there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'rmarkdown', 'DT', 'ggplot2'

Packages suggested but not available for checking:
  'haven', 'testthat', 'covr', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'stringr', 'miscTools', 'Hmisc', 'pROC', 'RcppArmadillo'

Packages suggested but not available for checking:
  'gplots', 'glmnet', 'e1071', 'mRMRe', 'epiR', 'DescTools',
  'survminer', 'BeSS', 'ggplot2', 'twosamples', 'Rfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'glamlasso', 'RcppArmadillo', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sass', 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'shinyWidgets', 'shinydashboard', 'bs4Dash', 'rmarkdown', 'testthat',
  'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'usethis'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘FrF2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DoE.base', 'igraph'

Packages suggested but not available for checking:
  'FrF2.catlg128', 'DoE.wrapper'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr'

Packages suggested but not available for checking:
  'lubridate', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RSNNS', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'devtools', 'digest', 'dplyr', 'pkgload', 'reshape',
  'rmarkdown', 'testthat'
Packages suggested but not available for checking:
  'covr', 'devtools', 'digest', 'dplyr', 'pkgload', 'reshape',
  'rmarkdown', 'testthat'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'digest', 'dplyr', 'ggplot2', 'Hmisc', 'plyr', 'Rcpp', 'spacetime',
  'sparseinv', 'TMB', 'ggpubr', 'reshape2', 'scales', 'RcppEigen'

Packages suggested but not available for checking:
  'covr', 'dggrids', 'gstat', 'INLA', 'lme4', 'sf', 'spdep',
  'testthat', 'verification'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'e1071'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'micEcon', 'miscTools', 'plm'

Package suggested but not available for checking: ‘MCMCpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'vroom', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'fs', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cna', 'dplyr', 'Rfast'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'fishmethods', 'FSA', 'pkgdown', 'readxl', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘car’

Packages suggested but not available for checking:
  'DescTools', 'dplyr', 'fishmethods', 'marked', 'pkgdown', 'plyr',
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reshape', 'freesurferformats', 'pkgfilecache', 'rgl', 'fields',
  'viridis', 'magick'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'sphereplot', 'Rvcg', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

Packages suggested but not available for checking:
  'arm', 'Boruta', 'bst', 'C50', 'car', 'caTools', 'Cubist', 'e1071',
  'evtree', 'extraTrees', 'foba', 'gbm', 'glmnet', 'hda', 'HDclassif',
  'Hmisc', 'ipred', 'kernlab', 'kknn', 'klaR', 'kohonen',
  'nodeHarvest', 'obliqueRF', 'penalized', 'penalizedLDA', 'pROC',
  'RANN', 'relaxo', 'rocc', 'rrcov', 'rrlda', 'RSNNS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rrcov’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'testthat'

Packages suggested but not available for checking:
  'testthat', 'RcppArmadillo', 'dplyr', 'FSelector', 'covr',
  'htmltools', 'RTCGA.rnaseq', 'ggplot2', 'rmarkdown', 'lintr',
  'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Argument items with no description in Rd file 'plot.classes.Rd':
  ‘\dots’
Argument items with no description in Rd file 'predict.fsim.Rd':
  ‘\dots’
Argument items with no description in Rd file 'predict.lm.Rd':
  ‘\dots’
Argument items with no description in Rd file 'predict.sfpl.Rd':
  ‘\dots’
Argument items with no description in Rd file 'predict.sfplsim.FASSMR.Rd':
  ‘\dots’
Argument items with no description in Rd file 'print.summary.mfplsim.Rd':
  ‘\dots’
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) report.Rd:18: Lost braces; missing escapes or markup?
    18 | 	\item{las}{numeric in {0,1,2,3}; the style of axis labels (see \code{\link{par}}).}
       |                               ^
Packages required but not available:
  'digest', 'caret', 'GA', 'dplyr', 'tidyr', 'prodlim', 'e1071'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'RSNNS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'readxl', 'readtext', 'xml2', 'rjson', 'shiny'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'oro.nifti', 'neurobase'

Packages suggested but not available for checking: 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘randomForestSRC’

Packages suggested but not available for checking:
  'rmarkdown', 'sparsevar', 'MTS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FuzzyR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rfast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘labdsv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fs.Rcheck/00install.out’ for details.
Packages required but not available:
  'plyr', 'reshape2', 'ggplot2', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'dplyr', 'ggplot2', 'stringr', 'e1071'

Package suggested but not available for checking: ‘lwgeom’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'igraph', 'qtl', 'stringr', 'glmnet', 'qpdf', 'RcppEigen'

Packages suggested but not available for checking:
  'plotly', 'rmarkdown', 'ggnetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fpopw', 'furrr', 'future', 'ggplot2', 'gplots', 'scales',
  'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'CompQuadForm', 'SKAT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fstcore', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'nanotime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'flextable', 'tidyr', 'rmarkdown', 'stringr'

Packages suggested but not available for checking: 'testthat', 'qpdf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'forecast', 'rainbow', 'sde', 'pcaPP', 'fda', 'pdfCluster', 'ecp',
  'e1071', 'fdapace', 'evgam', 'ROOPSD'

Packages suggested but not available for checking:
  'fds', 'R2jags', 'meboot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Spec_compare_localize_freq.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) Spec_compare_localize_freq.Rd:52: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'sf', 'dplyr', 'tidyr', 'stringi'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘dplyr’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'lme4', 'afex'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ggplot2', 'igraph', 'devtools', 'ggrepel', 'randomcoloR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'narray', 'biclust', 'reshape', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'collapse', 'parallelDist', 'Rcpp', 'RcppParallel',
  'RcppXPtrUtils', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fda', 'ggplot2', 'tidyr', 'patchwork', 'RSpectra', 'roahd', 'dplyr',
  'stringr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'dqrng'

Packages suggested but not available for checking:
  'Ckmeans.1d.dp', 'DescTools', 'DiffXTables', 'GridOnClusters',
  'infotheo', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'keras', 'tensorflow', 'fda.usc', 'fda', 'ggplot2', 'ggpubr',
  'caret', 'reshape2', 'flux'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'glmnet', 'lava', 'fda', 'funData'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'dplyr', 'tidyr', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'ggplot2', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

Packages suggested but not available for checking:
  'covr', 'fda', 'ggplot2', 'reshape2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future.apply', 'geometry'

Packages suggested but not available for checking:
  'future', 'memoise', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CVXR', 'GA', 'MBESS', 'MCMCpack', 'RSpectra', 'sem'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'scales', 'doFuture', 'doRNG', 'future', 'progressr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'fda', 'ggplot2', 'spatstat.explore', 'spatstat.geom', 'stringr',
  'tidyr'

Packages suggested but not available for checking:
  'pROC', 'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cowplot', 'dplyr', 'ggforce', 'ggplot2', 'patchwork', 'stringr',
  'tidyr'

Packages suggested but not available for checking:
  'kableExtra', 'rmarkdown', 'testthat', 'magick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'funFEM', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘refund’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'broom', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggrepel', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tidyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'ade4', 'ggplot2', 'rmarkdown', 'testthat', 'tidytext'
Running examples in ‘funrar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: distinctiveness
> ### Title: Functional Distinctiveness on site-species matrix
> ### Aliases: distinctiveness
> 
> ### ** Examples
> 
> data("aravo", package = "ade4")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘ade4’
Calls: data -> find.package
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ade4', 'ape', 'ks', 'missForest', 'phytools', 'viridis'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'stringr', 'readr', 'fs'

Packages suggested but not available for checking: 'visNetwork', 'igraph'

Package which this enhances but not available for checking: ‘blogdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dbscan', 'mlVAR'

Packages suggested but not available for checking:
  'covid19us', 'Ecdat', 'ggplot2', 'patchwork', 'randomcoloR',
  'readxl', 'reshape2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rmpfr', 'gmp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘future’

Packages suggested but not available for checking:
  'carrier', 'covr', 'dplyr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fastDummies', 'bigmemory', 'gplots'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'attachment', 'devtools', 'parsermd', 'roxygen2', 'stringi', 'tidyr',
  'usethis'

Packages suggested but not available for checking:
  'pkgload', 'rcmdcheck', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'glmnet', 'RSpectra', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'shiny'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Found the following files/directories:
  ‘completeTrial_byArm_eventPriorRateC3=0.001_eventPriorRateT1=0_eventPriorRateT2=0_eventPriorWt=0.5.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.2.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.4.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.6.RData’
  ‘completeTrial_pooled_eventPriorRate=0.001_eventPriorWt=0.5.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.2.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.4.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.6.RData’
  ‘rcdf_byArm_arm=T1_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03.pdf’
  ‘rcdf_pooled_eventPriorRate=0.06.pdf’
Package required but not available: ‘future’

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'batchtools'

Packages suggested but not available for checking: 'future.apply', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘future’

Packages suggested but not available for checking: 'future.apply', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘future’

Package suggested but not available for checking: ‘ff’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'caTools', 'e1071', 'EnvStats'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'maxLik', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dbscan'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'factoextra', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'WGCNA', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'dplyr', 'tidyr', 'geosphere'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'readr', 'rvest', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ROI.plugin.glpk’

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘digest’
checkRd: (-1) trapezoidalApproximation-methods.Rd:49: Lost braces; missing escapes or markup?
    49 | For example, if Val(A) < EV_{1/3}(A) or Val(A) > EV_{2/3}(A),
       |                             ^
checkRd: (-1) trapezoidalApproximation-methods.Rd:49: Lost braces; missing escapes or markup?
    49 | For example, if Val(A) < EV_{1/3}(A) or Val(A) > EV_{2/3}(A),
       |                                                     ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'reshape2', 'ecp'

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Errors in running code in vignettes:
when running code in ‘GettingStarted.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘GettingStarted.Rmd’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'shiny', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘modEvA’

Packages suggested but not available for checking: 'raster', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘palasso’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'markovchain', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'testthat', 'vdiffr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘reticulate’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'collapse', 'dreamerr', 'dqrng', 'Rcpp', 'summclust',
  'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'fixest', 'ivreg', 'covr', 'rmarkdown', 'broom', 'modelsummary',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fixest', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'imager'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'doFuture', 'future', 'geosphere', 'ggplot2', 'JOPS', 'progressr'

Packages suggested but not available for checking:
  'lintr', 'scales', 'spelling', 'styler'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'shiny', 'reshape2', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'egg', 'ggforce', 'ggplot2', 'ggrepel', 'ggplotify',
  'ggpubr', 'tidyr', 'pheatmap'

Packages suggested but not available for checking: 'FactoMineR', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'igraph', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gadget2.Rcheck/00install.out’ for details.
Packages required but not available: 'digest', 'TMB'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'geosphere', 'raster'

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'FNN'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'potions', 'readr', 'sf', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'gt', 'kableExtra', 'pkgdown', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'memoise', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'covr', 'gamm4', 'ggplot2', 'PLmixed', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'gargle', 'ryandexdirect', 'rfacebookstat',
  'rvkstat', 'rmytarget', 'rym', 'rgoogleads', 'rappsflyer'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'ggplot2', 'rtracklayer', 'stringr'

Packages suggested but not available for checking:
  'Hmisc', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'tidyjson', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'traits', 'dplyr', 'ggplot2', 'heatmaply', 'reshape2', 'dendextend',
  'ape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘lme4’
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'hrbrthemes', 'gganimate', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'BayesX', 'R2BayesX'
checkRd: (-1) stabsel.mboostLSS.Rd:44: Lost braces
    44 |     always use code{"none"}.}
       |                    ^
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘latticeExtra’

Packages suggested but not available for checking:
  'kernlab', 'car', 'DAAG', 'prettydoc', 'rmarkdown', 'bookdown'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'copula', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'rmarkdown', 'spelling'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘shiny’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘e1071’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘kappalab’

Package suggested but not available for checking: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) naref.Rd:13: Lost braces
    13 | \details{ For every \code{factor} or \code{character} column in \code{x}, \code{naref} sets \code{NA} as the reference level for a \code{factor} variable. Columns coded as \code{character} class are first converted to factors via \R{factor(x)}.  If \code{impute=TRUE} then the numeric columns are converted to two columns, one appended \code{.x} that contains imputed values and another appended \code{.miss} which is a binary variable indicating whether the original value was missing.  Numeric columns are returned without change if \code{impute=FALSE} or if they do not contain any missing values.  
       |                                                                                                                                                                                                                                         ^
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
checkRd: (-1) LGAclaims.Rd:30: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:34: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:35: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:36: Escaped LaTeX specials: \_
checkRd: (-1) brownfat.Rd:35: Lost braces
    35 | \references{ Routhier-Labadie, A., Ouellet, V.,  Bellemare, W., Richard, D., Lakhal-Chaieb, L., Turcotte, E., and Carpentier, A. C. (2011), Outdoor Temperature, Age, Sex, Body Mass Index, and Diabetic Status Determine the Prevalence, Mass, and Glucose-Uptake Activity of 18{F}-{FDG}-Detected {BAT} in Humans.\emph{The Journal of Clinical Endocrinology and Metabolism}, 	Volume \bold{96}, number 1, pp 192-199.
       |                                                                                                                                                                                                                                                                                  ^
Package suggested but not available for checking: ‘distributions3’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) term.plotZadj.Rd:6: Lost braces
     6 |  \ This is a wrapper to function \code{\link[gamlss]{term.plot}}. code{term.plotZadj} produces term plots for a specified parameter from a    
       |                                                                       ^
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘distributions3’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘spam’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'interp', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'glmnet', 'robustHD', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘Ecdat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'tensorflow'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'tensorflow'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) GSE.Test.Main.Rd:23: Escaped LaTeX specials: \_
Packages suggested but not available for checking:
  'doRNG', 'lhs', 'caret', 'e1071', 'kernlab'
Packages required but not available:
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Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'fields', 'Rcpp'

Packages suggested but not available for checking:
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Package which this enhances but not available for checking: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'ggplot2', 'plotly'

Packages suggested but not available for checking:
  'BradleyTerry2', 'DiagrammeR', 'DOT', 'MCMCglmm', 'R2jags',
  'bookdown', 'cowplot', 'haplo.stats', 'htmlwidgets', 'manhattanly',
  'meta', 'pedigree', 'pedigreemm', 'readr', 'reshape', 'rmarkdown',
  'rms'

Package which this enhances but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'doRNG', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package suggested but not available for checking: ‘lgarch’
checkRd: (-1) glag.Rd:7: Lost braces; missing escapes or markup?
     7 | Similar to the \code{\link{lag}} function from the \code{stats} package, but \code{glag} enables padding (e.g. {NA}s or 0s) of the lost entries. Contrary to the \code{\link{lag}} function in the stats package, however, the default in \code{glag} is to pad (with \code{NA}s). The \code{glag} is particularly suited for \code{\link{zoo}} objects, since their indexing is retained
       |                                                                                                                ^
Package required but not available: ‘vcfR’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Packages suggested but not available for checking:
  'aws.signature', 'covr', 'httpuv', 'rmarkdown', 'spelling',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
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Packages suggested but not available for checking:
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) read.ctable.Rd:19: Lost braces; missing escapes or markup?
    19 | a integer scalar which is the index ({icol,irow}) of {row,col}-header
       |                                      ^
checkRd: (-1) read.ctable.Rd:19: Lost braces; missing escapes or markup?
    19 | a integer scalar which is the index ({icol,irow}) of {row,col}-header
       |                                                      ^
checkRd: (-1) read.ctable.Rd:29: Lost braces; missing escapes or markup?
    29 | output array, {row,col}.names are not necessary \code{dimnames[[1]]} and
       |               ^
Packages required but not available:
  'jsonify', 'stringi', 'tidyxl', 'units', 'xml2'

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Package suggested but not available for checking: ‘chemometrics’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Errors in running code in vignettes:
when running code in ‘gasfluxes-howto.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘gasfluxes-howto.Rmd’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'arrangements', 'copula', 'dplyr', 'ggplot2', 'mvnfast', 'nloptr',
  'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'RSpectra', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'cubature', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'ggplot2', 'rstan', 'stringr', 'shiny',
  'StanHeaders', 'RcppEigen', 'RcppParallel'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat', 'ragg', 'vdiffr', 'rstantools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppParallel', 'RcppEigen'

Package suggested but not available for checking: ‘RcppEigen’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'fields', 'sparr', 'spatstat.geom', 'terra'

Packages suggested but not available for checking:
  'dplyr', 'R.rsp', 'spelling', 'testthat', 'usethis'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ridigbio', 'dplyr', 'rgbif', 'CoordinateCleaner', 'terra', 'spThin',
  'stringr', 'leaflet', 'spatstat.geom'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'lbfgs', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'ggplot2', 'ggrepel', 'lhs',
  'splitfngr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) Sim.Markov.Chain.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{eta0}{inital value in {1,...,r}.}
       |                             ^
Packages required but not available: 'ggplot2', 'metR', 'rgl'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'SSBtools', 'RegSDC'

Packages suggested but not available for checking:
  'formattable', 'kableExtra', 'rmarkdown', 'testthat', 'Rsymphony',
  'Rglpk'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FD', 'GA'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GB2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cubature', 'survey'

Package suggested but not available for checking: ‘simFrame’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'devtools', 'tidyverse', 'seqinr', 'stringr', 'e1071', 'caret', 'gbm'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppNumerical', 'RcppEigen'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'readr', 'stringr', 'lubridate'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'arrow', 'dplyr', 'duckdbfs'

Packages suggested but not available for checking:
  'spelling', 'dbplyr', 'testthat', 'covr', 'rmarkdown', 'minioclient'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'SKAT'

Packages suggested but not available for checking:
  'rmarkdown', 'bindata', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gbm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'beepr', 'dismo', 'dplyr', 'gbm', 'ggmap', 'ggplot2', 'ggspatial',
  'lubridate', 'readr', 'sf', 'stars', 'starsExtra', 'stringi',
  'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'pdp', 'vip', 'viridis'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gbm.Rcheck/00install.out’ for details.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'rgl', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) fitgbd.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) fitgld.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) gb.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) gbd.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) gld.Rd:36: Escaped LaTeX specials: \&
Package in Depends field not imported from: ‘tools’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  ‘tools:::.Rd_get_argument_names’ ‘tools:::RdTags’ ‘tools:::fetchRdDB’
  See the note in ?`:::` about the use of this operator.
Package required but not available: ‘rjags’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'doRNG', 'gbm'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'caTools', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'readr', 'reshape2', 'stringr'

Packages suggested but not available for checking:
  'pander', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gCat.Rcheck/00install.out’ for details.
Packages required but not available: 'RSQLite', 'plyr', 'reshape'

Package suggested but not available for checking: ‘gputools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘plm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘raster’

Package suggested but not available for checking: ‘paleofire’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'rvest', 'wordcloud', 'tm'

Packages suggested but not available for checking:
  'covr', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'FNN', 'latticeExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) listInverseBlocks.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{List all the inverse matrices of the leading sub-matrix of P=Sigma^{-1}
       |                                                                           ^
checkRd: (-1) listInverseBlocks.Rd:17: Lost braces; missing escapes or markup?
    17 | List all the inverse matrices of the leading sub-matrix of P=Sigma^{-1}
       |                                                                    ^
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjags’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'postpack', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'cowplot', 'ggplot2', 'lubridate', 'readxl', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘einsum’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ptw', 'nls.multstart'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Running examples in ‘GDAdata-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Decathlon
> ### Title: Top performances in the Decathlon from 1985 to 2006.
> ### Aliases: Decathlon
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(Decathlon, package="GDAdata")
> summary(Decathlon[, grep("P.*", names(Decathlon))])
   Polevault         P100m             Plj              Psp       
 Min.   :2.850   Min.   : 597.0   Min.   : 569.0   Min.   :418.0  
 1st Qu.:4.200   1st Qu.: 765.0   1st Qu.: 757.0   1st Qu.:622.0  
 Median :4.400   Median : 806.0   Median : 804.0   Median :672.0  
 Mean   :4.405   Mean   : 806.6   Mean   : 807.4   Mean   :674.6  
 3rd Qu.:4.650   3rd Qu.: 847.0   3rd Qu.: 857.0   3rd Qu.:726.0  
 Max.   :5.760   Max.   :1042.0   Max.   :1089.0   Max.   :941.0  
      Phj           P400m         P110h             Ppv              Pdt       
 Min.   : 396   Min.   :532   Min.   : 526.0   Min.   : 321.0   Min.   :231.0  
 1st Qu.: 696   1st Qu.:746   1st Qu.: 777.0   1st Qu.: 673.0   1st Qu.:600.0  
 Median : 749   Median :789   Median : 824.0   Median : 731.0   Median :655.0  
 Mean   : 749   Mean   :788   Mean   : 821.6   Mean   : 734.4   Mean   :657.8  
 3rd Qu.: 803   3rd Qu.:832   3rd Qu.: 868.0   3rd Qu.: 804.0   3rd Qu.:713.0  
 Max.   :1061   Max.   :998   Max.   :1044.0   Max.   :1152.0   Max.   :970.0  
      Pjt             P1500      
 Min.   : 330.0   Min.   :121.0  
 1st Qu.: 588.0   1st Qu.:607.0  
 Median : 644.0   Median :669.0  
 Mean   : 648.1   Mean   :661.7  
 3rd Qu.: 707.0   3rd Qu.:725.0  
 Max.   :1040.0   Max.   :946.0  
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'stars', 'av', 'sf', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'xml2'

Packages suggested but not available for checking:
  'gt', 'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'terra', 'stars', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following calls to attach():
File ‘g.data/R/g.data.attach.R’:
  attach(NULL, pos, basename(dir))
See section ‘Good practice’ in ‘?attach’.
checkRd: (-1) is.what.Rd:23-24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) is.what.Rd:25: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) is.what.Rd:26-27: Lost braces in \enumerate; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'descriptio', 'FactoMineR', 'ggplot2', 'ggrepel'

Packages suggested but not available for checking:
  'R.rsp', 'rmarkdown', 'rmdformats', 'TraMineR', 'sf', 'shiny',
  'miniUI', 'esquisse', 'rclipboard', 'factoextra', 'ade4'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'dplyr', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leaflet', 'shiny', 'ggplot2', 'RSQLite', 'dplyr', 'stringr', 'DT',
  'readr', 'shinyWidgets', 'shinycssloaders'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'magick', 'pdftools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Packages suggested but not available for checking: 'fastRG', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'nloptr', 'Rcpp', 'shiny', 'shinydashboard',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'CDM', 'cdmTools', 'testthat', 'stringr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'raster', 'igraph', 'terra'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'Rcpp', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'stringr', 'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BAMMtools’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) GDSARM.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) GDSARM.Rd:10: Lost braces
    10 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
checkRd: (-1) GDS_givencols.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) GDS_givencols.Rd:10: Lost braces
    10 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
checkRd: (-1) dantzig.delta.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) dantzigS.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) dataCompoundExt.Rd:6: Lost braces
     6 | \title{Compound Extraction experiment of Dopico-Garc{\' i}a et al. (2007)}
       |                                                     ^
checkRd: (-1) dataCompoundExt.Rd:35: Lost braces
    35 | An analytical experiment conducted by Dopico-Garc{\' i}a et al. (2007) to
       |                                                  ^
checkRd: (-1) dataCompoundExt.Rd:22: Lost braces
    22 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'systemfonts', 'htmltools', 'gfonts'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'gdxrrw', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'autoimage', 'optimx', 'Rcpp'

Packages suggested but not available for checking:
  'sf', 'testthat', 'gstat', 'spam', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'spelling', 'testthat'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'terra', 'geosphere', 'red', 'biomod2', 'kernlab'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'Rmpfr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geepack', 'ggplot2', 'lme4', 'MESS'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'geepack', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘broom’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) dental.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:21: Lost braces in \itemize; meant \describe ?
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘lme4’

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'inferference', 'AER', 'ICSNP', 'rmarkdown',
  'geepack', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ape', 'phytools', 'digest', 'Rcpp'

Package suggested but not available for checking: ‘TreeSim’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'rvest', 'dplyr', 'pheatmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'pcaPP', 'Hmisc', 'reshape2', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) gelnet.logreg.obj.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{y}{n-by-1 binary response vector sampled from {0,1}}
       |                                                     ^
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) ReadGem.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:79-80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ReadGem.Rd:81-82: Lost braces in \itemize; \value handles \item{}{} directly
Auto-generated content requiring editing in Rd file 'gemlog-package.Rd':
  \details: ‘...the package, including the most important ~~ ~~ functions ~~’
Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown', 'readr'
'LazyData' is specified without a 'data' directory
Running examples in ‘gemma2-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calc_XHiY
> ### Title: Calculate XHiY
> ### Aliases: calc_XHiY
> 
> ### ** Examples
> 
> readr::read_tsv(system.file("extdata",
+ "mouse100.pheno.txt",
+ package = "gemma2"),
+ col_names = FALSE) -> pheno
Error in loadNamespace(x) : there is no package called ‘readr’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'meta', 'plyr', 'rjags', 'Rglpk'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'raster', 'gdistance', 'stringr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'plyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'ggnetwork', 'ggplot2', 'ggraph', 'igraph', 'phangorn',
  'visNetwork', 'reshape2', 'shiny', 'ggtree', 'dplyr', 'future',
  'future.apply', 'ShortRead'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid package aliases in Rd file 'GenBinom-package.Rd':
  ‘GenbinomApps-package’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'devtools', 'rmarkdown', 'testthat'
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'genderdata', 'ggplot2', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'reshape2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Documented arguments not in \usage in Rd file 'CirDisp.Rd':
  ‘x’

Documented arguments not in \usage in Rd file 'CirKurt.Rd':
  ‘x’ ‘na.rm’

Documented arguments not in \usage in Rd file 'CirSD.Rd':
  ‘x’

Documented arguments not in \usage in Rd file 'CirSkew.Rd':
  ‘x’

Documented arguments not in \usage in Rd file 'CirVar.Rd':
  ‘x’

Documented arguments not in \usage in Rd file 'MeanDir.Rd':
  ‘x’

Documented arguments not in \usage in Rd file 'impact.Rd':
  ‘na.rm’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Documented arguments not in \usage in Rd file 'expand.Rd':
  ‘x’

Documented arguments not in \usage in Rd file 'grapes-bq-grapes.Rd':
  ‘x’

Documented arguments not in \usage in Rd file 'grapes-bt-grapes.Rd':
  ‘x’

Documented arguments not in \usage in Rd file 'stftcalc.Rd':
  ‘x’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'rgl'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'annotate', 'GEOquery'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) GeneF-internal.Rd:40: Lost braces; missing escapes or markup?
    40 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
checkRd: (-1) flexorhtest.Rd:57: Lost braces; missing escapes or markup?
    57 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
checkRd: (-1) flexorhtest.pvalue.Rd:57: Lost braces; missing escapes or markup?
    57 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'ape', 'ggpubr', 'lolliplot', 'pegas', 'reshape2',
  'rtracklayer', 'shiny', 'shinyjs', 'stringr', 'tidyr', 'vcfR'

Packages suggested but not available for checking:
  'maptools', 'muscle', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'clusterProfiler', 'dplyr', 'europepmc', 'fst', 'geneset', 'ggplot2',
  'ggraph', 'ggvenn', 'igraph', 'openxlsx', 'stringr', 'stringi',
  'tidyr'

Packages suggested but not available for checking:
  'AnnotationDbi', 'cowplot', 'ComplexUpset', 'fuzzyjoin', 'fgsea',
  'ggplotify', 'ggsci', 'ggupset', 'ggrepel', 'ggridges', 'ggnewscale',
  'GOplot', 'GOSemSim', 'msigdbr', 'pheatmap', 'tm', 'treemap',
  'reshape2', 'rio', 'rrvgo', 'scales', 'testthat', 'wordcloud',
  'rmarkdown', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stringr'

Packages suggested but not available for checking: 'testthat', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'np', 'meboot'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reshape’

Package suggested but not available for checking: ‘mlogit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CVST', 'kernlab', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'RcppParallel', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'DataVisualizations', 'rgl', 'reshape2', 'fields', 'plotly',
  'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'spam', 'fields', 'RcppEigen'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'ggplot2', 'dplyr'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'mlr3', 'mlr3learners'

Packages suggested but not available for checking:
  'glmnet', 'ranger', 'e1071', 'xgboost', 'kknn', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'pkgload', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'cowplot', 'dplyr', 'ggplot2', 'reshape2', 'reticulate', 'testthat',
  'tidyr', 'tmod'

Packages suggested but not available for checking:
  'clusterProfiler', 'GO.db', 'rmarkdown', 'UpSetR', 'AnnotationHub',
  'ensembldb', 'org.Hs.eg.db'

Package which this enhances but not available for checking: ‘simplifyEnrichment’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'fst', 'stringi', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'SLOPE', 'ggplot2', 'bigmemory'

Packages suggested but not available for checking:
  'shiny', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'htmltools', 'lubridate', 'Rcpp', 'shiny', 'shinyjs'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'GGEBiplots', 'ggforce', 'ggplot2', 'scales', 'pcaMethods', 'rrcov',
  'dplyr', 'missMDA', 'reshape2', 'tidyr', 'prettydoc'

Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:86-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:48-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:59-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:78-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:93-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:95-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:97-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:124: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:125: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:126-128: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'exactextractr', 'terra', 'sf', 'sfnetworks', 'igraph', 'dplyr',
  'tidygraph', 'spdep'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'dtplyr', 'stringr', 'sunburstR', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'gt', 'gtsummary', 'plotly', 'rmarkdown',
  'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘mlpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'genieclust', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readr', 'dplyr', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'lobstr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'rvest', 'stringr', 'xml2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fastDummies', 'Hmisc', 'maxLik'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leaflet', 'shiny', 'shinyjs', 'DT', 'shinycssloaders', 'dplyr',
  'tidyr', 'ggplot2', 'readr', 'rmarkdown', 'rio', 'shinyWidgets'

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggridges', 'hierfstat', 'Rcpp', 'RcppParallel',
  'stringr', 'vcfR', 'RcppArmadillo'

Packages suggested but not available for checking:
  'dplyr', 'junctions', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reshape’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reactome.db', 'AnnotationDbi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘ade4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'SKAT', 'seqminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shinyBS', 'cowplot', 'dplyr', 'DT', 'ggplot2', 'htmltools',
  'Rmixmod', 'shiny', 'shinythemes', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘cSEM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'rgl'

Packages suggested but not available for checking: 'bestglm', 'vcdExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/GenSA.Rcheck/00install.out’ for details.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'igraph', 'rmarkdown', 'cubature'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nlsr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'mvmesh', 'geometry', 'SphericalCubature', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) gensvm.grid.Rd:125: Lost braces
   125 | "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                                ^
checkRd: (-1) gensvm.grid.Rd:125: Lost braces
   125 | "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                                    ^
checkRd: (-1) gensvm.grid.Rd:127: Lost braces
   127 | GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                    ^
checkRd: (-1) gensvm.grid.Rd:127: Lost braces
   127 | GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                        ^
checkRd: (-1) gensvm.grid.Rd:129: Lost braces
   129 | section "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more 
       |                                        ^
checkRd: (-1) gensvm.grid.Rd:129: Lost braces
   129 | section "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more 
       |                                            ^
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘shiny’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TrialSize', 'dplyr', 'Hmisc'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fmesher', 'terra', 'sf', 'SUMMER', 'ggplot2', 'fields', 'TMB',
  'RcppEigen'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘optimx’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'censobr', 'covr', 'dplyr', 'ggplot2', 'rmarkdown', 'scales',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'furrr', 'ggplot2', 'ggpubr', 'latex2exp', 'progressr',
  'raster', 'sf', 'spatstat.explore', 'spatstat.geom',
  'spatstat.model', 'terra', 'tidyr'

Packages suggested but not available for checking:
  'elevatr', 'geosphere', 'ggthemes', 'readr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'tmap', 'spdep', 'reldist', 'dplyr', 'fclust',
  'future.apply', 'progressr', 'reshape2', 'shiny', 'sf', 'leaflet',
  'plotly', 'terra', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'future', 'ppclust', 'ClustGeo', 'car', 'rgl', 'ggpubr',
  'kableExtra', 'viridis', 'testthat', 'bslib', 'shinyWidgets',
  'shinyhelper', 'waiter', 'classInt', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘sf’
Package required but not available: ‘terra’

Package suggested but not available for checking: ‘archive’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'sf', 'snakecase'

Packages suggested but not available for checking:
  'pander', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
checkRd: (-1) geodist.Rd:59: Lost braces
    59 | code{sf::st_dist()} function.
       |     ^
checkRd: (-1) geodist_vec.Rd:65: Lost braces
    65 | code{sf::st_dist()} function.
       |     ^
checkRd: (-1) georange.Rd:36: Lost braces
    36 | code{sf::st_dist()} function.
       |     ^
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'e1071', 'sf', 'Rcpp', 'terra', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'leaflet', 'shiny', 'shinydashboard'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) calvaria.Rd:8: Lost braces; missing escapes or markup?
     8 | A named list containing \code{x} {a vector containing the ages}
       |                                  ^
checkRd: (-1) calvaria.Rd:9: Lost braces; missing escapes or markup?
     9 |   \code{y} {a matrix where each column is a preshape.} The 23rd, 101st,
       |            ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'rgl', 'fields'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'rnaturalearth', 'ggrepel', 'geogrid'

Packages suggested but not available for checking:
  'sf', 'testthat', 'covr', 'lintr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'httpcache', 'sf', 'xml2'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'ggrepel', 'geofacet', 'htmltools', 'httptest',
  'janitor', 'leaflet', 'patchwork', 'readr', 'rmarkdown', 'testthat',
  'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘raster’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'geomultistar', 'readr', 'rolap', 'sf', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'dbplyr', 'DiagrammeR', 'DiagrammeRsvg', 'dm', 'pander', 'rmarkdown',
  'RSQLite', 'snakecase', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'geodata', 'geosphere', 'igraph', 'terra', 'stringr', 'memoise',
  'beepr', 'rnaturalearth'

Packages suggested but not available for checking:
  'devtools', 'lintr', 'pkgdown', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'sf', 'testthat', 'rmarkdown', 'ggplot2'
Running examples in ‘geohashTools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gis_tools
> ### Title: Helpers for interfacing geohashes with sp/sf objects
> ### Aliases: gh_to_sp gh_to_spdf gh_to_spdf.default gh_to_spdf.data.frame
> ###   gh_to_sf gh_covering
> 
> ### ** Examples
> 
>   # get the neighborhood of this geohash in downtown Apia as an sp object
>   downtown = '2jtc5x'
>   apia_nbhd = unlist(gh_neighbors(downtown))
>   apia_sp = gh_to_sp(apia_nbhd)
> 
>   # all geohashes covering a random sampling within Apia:
>   apia_covering = gh_covering(smp <- sp::spsample(apia_sp, 10L, 'random'))
Error in check_suggested("sf") : 
  This function requires an installation of sf; install.packages('sf') to proceed.
Calls: gh_covering ... <Anonymous> -> .class1 -> gh_to_sf -> check_suggested
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'crul', 'geojson', 'geojsonsf', 'readr', 'sf', 'V8'

Packages suggested but not available for checking:
  'covr', 'gistr', 'leaflet', 'RPostgres', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘protolite’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'sf', 'stringi', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'geometries', 'jsonify', 'sfheaders'

Packages suggested but not available for checking:
  'covr', 'jsonify', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'censable', 'dataverse', 'dplyr', 'geos', 'ggplot2', 'readr', 'Rcpp',
  'sf', 'stringr', 'tidyr', 'tinytiger'

Packages suggested but not available for checking:
  'redist', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘GEOmap’
Packages required but not available: 'fields', 'sf', 'MBA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'geomarocdata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spdep', 'raster', 'terra', 'sf', 'geosphere', 'lubridate',
  'ggplot2', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘readr’

Packages suggested but not available for checking:
  'sf', 'EML', 'emld', 'units', 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'spelling', 'testthat', 'rgl', 'interp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'GPvecchia', 'fields', 'spam', 'nabor', 'lamW', 'GpGp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'raster', 'caret', 'rasterVis', 'arm', 'kernlab', 'e1071', 'Cubist',
  'ranger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'geojsonR'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RRPP', 'rgl', 'ape', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'scales', 'systemfonts', 'textshaping'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'ragg', 'roxygen2', 'sf', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'RSQLite', 'sf', 'tidyr'

Packages suggested but not available for checking:
  'pander', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjson’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geometa’

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geosphere', 'igraph', 'sf'

Packages suggested but not available for checking:
  'devtools', 'mapview', 'rmarkdown', 'roxygen2', 'testthat',
  'tmaptools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'velociraptr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'spelling', 'testthat', 'readxl', 'dplyr', 'tidyr'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'constrainedKriging', 'fields'

Package suggested but not available for checking: ‘gstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following significant warnings:

  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
xvalid 5.768  0.113   6.357
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘readr’

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'covr', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘mapview’
'LazyData' is specified without a 'data' directory
Running examples in ‘geosed-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geo_midpoint
> ### Title: Point of Equidistance to Up to Three Longitude, Latitude Points
> ### Aliases: geo_midpoint
> ### Keywords: circle disk enclosing geo latitude longitude sed smallest
> 
> ### ** Examples
> 
> 
> # Load required packages
> require(mapview)
Loading required package: mapview
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘mapview’
> require(sp)
Loading required package: sp
> 
> # Create sample geo dataset
> sample_coord <-
+    matrix(
+         c(
+             sample(327131680:419648450, 3) / 10000000,
+             sample(-1147301410:-1241938690, 3) / 10000000
+         ),
+         ncol = 2
+     )
> 
> # Generate circumcenter and radius
> gmp <- geo_midpoint(sample_coord)
> 
> # Find distance to circumcenter
> radius <- geo_point_dist(rbind(sample_coord[1, ], gmp))
> 
> # Create 80 sided polygon based on gmp's center and radius
> gmp_poly <- geo_surround_poly(gmp, radius, 80)
> 
> # Join all the points into a single matrix
> bound_poly <- rbind(sample_coord, as.vector(gmp), gmp_poly)
> 
> # Create SpacialPoints object and pass to mapview for visualization
> mapview(
+     SpatialPoints(
+         bound_poly[,c(2, 1)],
+         proj4string = CRS("+proj=longlat +datum=WGS84")
+     )
+ )
Error in mapview(SpatialPoints(bound_poly[, c(2, 1)], proj4string = CRS("+proj=longlat +datum=WGS84"))) : 
  could not find function "mapview"
Execution halted
Packages required but not available:
  'SecDim', 'DescTools', 'ggplot2', 'dplyr', 'ggrepel'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sparklyr', 'dplyr', 'dbplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FD', 'StatMatch', 'fields', 'minqa', 'geospt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gstat', 'minqa', 'fields', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'libgeos', 'wk'

Packages suggested but not available for checking: 'testthat', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spdep', 'sf', 'ggplot2', 'signs', 'Rcpp', 'RcppParallel', 'rstan',
  'rstantools', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'bayesplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

Packages suggested but not available for checking:
  'RandomFields', 'mapmisc'

Packages which this enhances but not available for checking:
  'INLA', 'diseasemapping'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Malformed Description field: should contain one or more complete sentences.
Found the following calls to data() loading into the global environment:
File ‘geotools/R/zzz.R’:
  data(fr_geo_rad)
See section ‘Good practice’ in ‘?data’.
Packages required but not available: 'raster', 'stringr', 'sf', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'ff'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fs', 'ggplot2', 'ggspatial', 'ggthemes', 'raster', 'rjson',
  'sf', 'stringr', 'viridis'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'beepr', 'cartography', 'dplyr', 'DT', 'GWmodel', 'raster', 'readxl',
  'shiny', 'shinyalert', 'shinyBS', 'shinybusy', 'shinydashboard',
  'shinyjs', 'shinyWidgets', 'spdep'

Packages suggested but not available for checking: 'rgdal', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'tourr', 'roxygen2', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available: 'DescTools', 'openxlsx'

Packages suggested but not available for checking:
  'dplyr', 'mice', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'data.tree', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'dplyr', 'tidyr', 'DT'

Packages suggested but not available for checking:
  'rmarkdown', 'gsheet', 'inti'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'broom', 'ggplot2', 'ggrepel', 'plyr'

Packages suggested but not available for checking:
  'pander', 'reshape2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'testthat'
Running ‘libgit2.R’ [0s/1s]
  Comparing ‘libgit2.Rout’ to ‘libgit2.Rout.save’ ...4,6d3
< Linking to libgit2 v1.7.1, ssh support: YES
< Global config: /home/hornik/.gitconfig
< Default user: myname <my@email.com>
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'dplyr', 'rio', 'RSelenium', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'arrow', 'dplyr'

Packages suggested but not available for checking:
  'bslib', 'DT', 'leaflet', 'leafpop', 'lubridate', 'patchwork',
  'plotly', 'rmarkdown', 'shiny', 'shinyalert', 'shinycssloaders',
  'shinyWidgets', 'testthat', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'bigmemory', 'RcppEigen', 'RcppThread'

Packages suggested but not available for checking:
  'glmnet', 'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'shiny', 'shinythemes'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DataCombine', 'tidyr', 'rsample', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'stringr', 'dplyr', 'future', 'furrr', 'memoise'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'xml2', 'dplyr', 'readr', 'lubridate', 'memoise', 'rvest',
  'tidyr', 'shiny'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'covr', 'fs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'dplyr', 'readr', 'reshape2', 'lubridate'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'testthat', 'covr', 'devtools'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'stringr', 'xml2', 'dplyr', 'readr', 'lubridate', 'rvest',
  'GetDFPData2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'dplyr', 'readr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'dplyr', 'janitor'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjson’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘run-all.R’ [0s/0s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'memoise', 'dplyr', 'readr', 'fs'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'gstat', 'fda', 'fda.usc', 'patchwork', 'spatstat.geom',
  'spatstat.explore', 'spatstat.model', 'spatstat.linnet', 'testthat',
  'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fastDummies', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'prettydoc', 'plm', 'fixest', 'cowplot'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘lgarch’
checkRd: (-1) vargaugeiis.Rd:22: Lost braces
    22 | \details{The function computes the variance of the Gauge (false-positive rate of outliers in impulse indicator saturation) for a given level of significance of selection (\code{t.pval}) and sample size ({\code{T}) based on Jiao and Pretis (2019). This is an auxilliary function used within the \code{\link{outliertest}} function.}}
       |                                                                                                                                                                                                            ^
Packages required but not available:
  'stringr', 'readxl', 'tidyr', 'rvest', 'xml2', 'dplyr', 'fs',
  'humanize'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'covr', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gettz.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘RLRsim’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'lubridate', 'readr'

Packages suggested but not available for checking: 'dplyr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘pcaPP’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'raster', 'sf', 'terra', 'geosphere', 'plyr', 'ggplot2', 'stringr',
  'animation', 'rasterVis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stringr', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plyr', 'shiny', 'shinyjs', 'shinyWidgets', 'shinythemes', 'tippy'

Packages suggested but not available for checking: 'RGtk2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyjs', 'shinythemes', 'survminer', 'tippy', 'plyr'

Package suggested but not available for checking: ‘condSURV’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'TeachingSampling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rvest', 'xml2', 'stringi', 'V8', 'tidyr', 'scatterpie', 'ggplot2',
  'ggrepel', 'googlesheets4', 'gsheet'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'spatstat', 'spatstat.geom', 'RcppEigen'

Packages suggested but not available for checking:
  'car', 'GGally', 'kde1d', 'lmerTest', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat', 'spatstat.geom', 'EigenR', 'Rcpp', 'RcppArmadillo',
  'roptim'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘SIS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'crul'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vcr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggpubr', 'stringr', 'truncreg'

Package suggested but not available for checking: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'devtools', 'testthat', 'rmarkdown', 'ggplot2', 'penaltyLearning'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggmsa', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggimage', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggrepel', 'shiny', 'htmltools',
  'ggfittext', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'ggstats', 'plyr', 'scales'

Packages suggested but not available for checking:
  'broom', 'broom.helpers', 'chemometrics', 'geosphere', 'ggforce',
  'Hmisc', 'igraph', 'intergraph', 'labelled', 'rmarkdown', 'roxygen2',
  'testthat', 'crosstalk', 'spelling', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'scales', 'plotly'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggthemes', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'flexsurv'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'stringi', 'tweenr', 'scales'

Packages suggested but not available for checking:
  'magick', 'svglite', 'rmarkdown', 'testthat', 'htmltools', 'covr',
  'transformr', 'av', 'ragg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'tidyr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cartographer', 'dplyr', 'ggmapinset', 'ggplot2', 'packcircles',
  'sf', 'tidyr'

Packages suggested but not available for checking:
  'ggrepel', 'nswgeo', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'dplyr', 'broom', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'scales', 'snakecase', 'stringr',
  'tidyr'

Packages suggested but not available for checking:
  'patchwork', 'rmarkdown', 'sf', 'stars', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'covr', 'testthat', 'ggnewscale'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RNifti', 'dplyr', 'ggplot2', 'ggnewscale', 'ggrepel', 'imager',
  'patchwork', 'tidyr', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggfun', 'ggplot2', 'ggplotify', 'aplot'

Packages suggested but not available for checking:
  'cowplot', 'ggimage', 'patchwork', 'prettydoc', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Packages suggested but not available for checking: 'BiocStyle', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'readr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ecp', 'ggplot2'

Packages suggested but not available for checking: 'rmarkdown', 'gstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'patchwork'

Packages suggested but not available for checking:
  'lintr', 'rmarkdown', 'scales', 'spelling', 'tidyr', 'testthat',
  'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'readr', 'egg', 'stringr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'gghalves', 'ggstance'

Packages suggested but not available for checking:
  'rmarkdown', 'viridis', 'MetBrewer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dagitty', 'dplyr', 'ggplot2', 'ggraph', 'ggrepel', 'igraph',
  'stringr', 'tidygraph'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggrepel'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'testthat', 'scales', 'spelling', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'isoband', 'scales'

Packages suggested but not available for checking:
  'vdiffr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'scales', 'distributional', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'svglite', 'broom', 'modelr', 'cowplot',
  'patchwork', 'covr', 'rmarkdown', 'fda', 'tidyr', 'posterior',
  'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'ggrepel', 'patchwork', 'metR', 'lhs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggnewscale'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'scales', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'labelled', 'patchwork', 'vdiffr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggforce', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'plyr', 'tidyr', 'scales', 'shiny', 'miniUI',
  'shinyBS', 'colourpicker', 'shinyAce'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'AER', 'brms', 'broom', 'car', 'effects', 'fixest', 'gamm4',
  'geepack', 'ggplot2', 'ggrepel', 'glmmTMB', 'haven', 'lme4',
  'logistf', 'marginaleffects', 'mice', 'MCMCglmm', 'nestedLogit',
  'parsnip', 'patchwork', 'rmarkdown', 'rms', 'rstanarm', 'rstantools',
  'sdmTMB', 'see', 'sjstats', 'survey', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘reshape2’

Packages suggested but not available for checking:
  'rgl', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'tidyverse', 'RSDA', 'dplyr', 'tidyr', 'stringr',
  'prodlim', 'ggforce', 'ggpubr', 'ggthemes'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'stringr', 'scales'

Packages suggested but not available for checking:
  'testthat', 'covr', 'zeitgebr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'colourpicker', 'ggplot2', 'miniUI', 'scales', 'shiny', 'shinyjs'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr', 'svglite', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FactoMineR', 'ggiraph', 'ggplot2', 'widgetframe', 'dplyr',
  'stringi', 'stringr', 'tidyr', 'ggrepel', 'tabxplor', 'htmlwidgets'

Packages suggested but not available for checking: 'finalfit', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'sf', 'scales'

Packages suggested but not available for checking:
  'CopernicusMarine', 'rmarkdown', 'stars', 'testthat', 'vdiffr',
  'svglite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'ggridges', 'fishmethods', 'broom',
  'ggrepel'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringi', 'gridtext', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'fixest', 'dreamerr', 'ggh4x', 'scales', 'marginaleffects'

Packages suggested but not available for checking:
  'rmarkdown', 'tinysnapshot', 'magick', 'svglite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'igraph', 'ggplot2', 'tidyr'

Packages suggested but not available for checking:
  'rcartocolor', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'scales', 'tweenr', 'polyclip', 'systemfonts',
  'RcppEigen'

Packages suggested but not available for checking:
  'concaveman', 'latex2exp', 'reshape2', 'units', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'scales', 'ggridges', 'mosaicCore', 'stringr', 'labelled'

Packages suggested but not available for checking:
  'tidyr', 'dplyr', 'mosaic', 'testthat', 'vdiffr', 'rmarkdown',
  'lubridate', 'broom', 'sf', 'ggthemes', 'covr', 'interp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'scales', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'forecast', 'ggrepel', 'glmnet', 'lintr', 'raster',
  'ROCR', 'lfda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'ggplotify', 'rmarkdown', 'prettydoc', 'tidyr', 'ggnewscale'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'magick', 'ragg', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'farver'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggfittext'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'vdiffr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'animation'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'vwline'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid NAMESPACE file, parsing gives:
Error in packageVersion("ggplot2"): there is no package called ‘ggplot2’

See section ‘Package namespaces’ in the ‘Writing R Extensions’ manual.
Packages required but not available: 'ggplot2', 'ggrepel'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'hdrcde', 'ggplot2', 'scales', 'farver', 'digest'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'vdiffr', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'ggthemes'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'aplot', 'factoextra', 'ggpubr', 'tidyr', 'patchwork'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'ggrepel'

Packages suggested but not available for checking:
  'geomtextpath', 'rmarkdown', 'sf', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'profvis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'ggthemes', 'patchwork', 'rmarkdown', 'testthat', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggfun', 'ggplotify', 'magick', 'scales'

Packages suggested but not available for checking: 'ape', 'ggtree'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'sf', 'pryr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ipaddress', 'dplyr', 'Rcpp', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggiraph', 'scales', 'reshape2', 'plyr', 'sjmisc',
  'stringr', 'tidyr', 'dplyr'

Packages suggested but not available for checking:
  'ggforce', 'ztable', 'moonBook', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'htmlwidgets', 'htmltools', 'Rcpp', 'systemfonts'

Packages suggested but not available for checking:
  'rmarkdown', 'shiny', 'sf', 'ggrepel', 'xml2', 'dplyr', 'gdtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘unisensR’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'actilifecounts', 'ActCR',
  'GGIRread', 'read.gt3x', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggridges', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package vignette without corresponding tangle output:
  ‘Introduction_to_gglasso_package.Rmd’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'broom', 'broom.mixed', 'dplyr', 'patchwork', 'tidyr'

Packages suggested but not available for checking: 'lme4', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'digest', 'scales', 'dplyr', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr', 'tidyr', 'dplyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2', 'GGally'

Packages suggested but not available for checking: 'rmarkdown', 'ggthemes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'mice', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'patchwork', 'plotly', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

Packages suggested but not available for checking:
  'RSpectra', 'popkin', 'bnpsd', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'reshape', 'GGally', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'car', 'dplyr', 'NetworkToolbox', 'NetworkComparisonTest',
  'nlshrink', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bestglm', 'GGally', 'ggplot2', 'GGMncv'

Package suggested but not available for checking: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'productplots', 'dplyr', 'plotly', 'tidyr', 'ggrepel',
  'scales'

Packages suggested but not available for checking: 'rmarkdown', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'ggplot2', 'ape'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'stringr', 'testthat', 'rmarkdown', 'tidyverse', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggrepel', 'igraph'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'scales'

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'sf', 'stars', 'smoothr', 'units'

Packages suggested but not available for checking:
  'ggspatial', 'cowplot', 'rmarkdown', 'scales', 'ggnewscale'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'covr', 'ggraph', 'igraph', 'spelling', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'scales', 'ggforce', 'tidyr', 'rnaturalearth', 'sf', 'ggplot2',
  'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'rmarkdown', 'stringi', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'stringr', 'tidytext'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr'

Packages suggested but not available for checking:
  'tidyr', 'testthat', 'rmarkdown', 'ggrepel', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'testthat', 'AER', 'vdiffr', 'rmarkdown', 'pander'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cachem', 'ggplot2', 'magick', 'memoise'

Packages suggested but not available for checking:
  'covr', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'gridpattern', 'scales'

Packages suggested but not available for checking:
  'ambient', 'dplyr', 'gganimate', 'magick', 'ragg', 'readr',
  'rmarkdown', 'sf', 'testthat', 'vdiffr'

VignetteBuilder packages required for checking but not installed:
  'ragg', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ALDEx2', 'aplot', 'DESeq2', 'dplyr', 'edgeR', 'GGally', 'ggplot2',
  'ggh4x', 'lefser', 'Maaslin2', 'metagenomeSeq', 'MicrobiomeStat',
  'readr', 'tidyr', 'ggprism', 'patchwork'

Packages suggested but not available for checking:
  'ComplexHeatmap', 'ggplotify', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'scales', 'ggnewscale', 'ggplot2', 'ggrepel', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'cowplot', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'scales', 'stringr', 'tidyr', 'farver'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'isoband', 'scales'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'Hmisc', 'profvis', 'ragg', 'rmarkdown', 'sf',
  'svglite', 'testthat', 'vdiffr', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'EnvStats', 'ggpp', 'ggstats'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'miniUI', 'shinyWidgets', 'shinyAce', 'stringr',
  'tidyverse', 'ggplot2', 'dplyr', 'scales', 'ggthemes', 'moonBook',
  'editData'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plotly', 'shiny', 'ggplot2', 'stringr', 'readr', 'haven', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'yulab.utils'

Packages suggested but not available for checking:
  'aplot', 'cowplot', 'ggimage', 'rmarkdown', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'scales', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggpp', 'ggplot2', 'scales', 'plyr', 'dplyr', 'lubridate'

Packages suggested but not available for checking:
  'rmarkdown', 'ggrepel', 'broom', 'broom.mixed', 'gginnards',
  'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggforce', 'stringr', 'GGally', 'rmarkdown', 'tidyr',
  'dplyr', 'readr', 'scales'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'rxode2', 'nlmixr2', 'lixoftConnectors', 'xgxr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'viridis', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown', 'ragg', 'scales', 'ggtext',
  'ggrepel', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'ezcox', 'ggnewscale', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'scales', 'dplyr', 'lubridate', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'ggrepel', 'gginnards', 'magick', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggbeeswarm', 'ggnewscale', 'patchwork',
  'rmarkdown', 'rstatix', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggrepel', 'ggsci', 'tidyr', 'dplyr', 'cowplot',
  'ggsignif', 'scales', 'rstatix'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'reshape2', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'scales', 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'colourpicker', 'dplyr', 'DT', 'GGally', 'ggbeeswarm', 'ggh4x',
  'ggplot2', 'ggpmisc', 'ggrepel', 'ggpubr', 'ggstance', 'Hmisc',
  'plotly', 'scales', 'shiny', 'shinyjs', 'shinyjqui', 'stringr',
  'survminer', 'tidyr', 'table1', 'shinyFiles', 'RPostgres',
  'ggridges', 'rms', 'patchwork'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'dplyr', 'sf', 'pkgdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'covr', 'ragg', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'gghalves', 'ggpp'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'randomForestSRC', 'tidyr', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'rmdformats', 'bookdown', 'dplyr', 'rmarkdown', 'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'dplyr', 'ggforce', 'igraph', 'scales', 'digest',
  'ggrepel', 'viridis', 'tidygraph', 'graphlayouts'

Packages suggested but not available for checking:
  'rmarkdown', 'gganimate', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'mixtools', 'ape', 'bgmm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggbeeswarm', 'ragg'

Packages suggested but not available for checking: 'rmarkdown', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rms', 'ggplot2', 'scales', 'cowplot'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking: 'sf', 'geos', 'redist'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp', 'scales'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'svglite', 'vdiffr', 'ggpp', 'patchwork',
  'devtools', 'prettydoc', 'ggbeeswarm', 'dplyr', 'readr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cowplot', 'ggplot2', 'plotly', 'qqplotr', 'stringr'

Packages suggested but not available for checking:
  'dplyr', 'lme4', 'lmerTest', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gRbase', 'CVglasso'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'patchwork', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'egg', 'do', 'set', 'cutoff', 'rms', 'nomogramFormula',
  'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'gridGeometry'

Packages suggested but not available for checking:
  'covr', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'ggplot2', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'cowplot', 'ggpubr', 'ggridges', 'viridis', 'hrbrthemes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'ragg', 'reshape2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'prettydoc', 'Seurat', 'tidyr'

Packages suggested but not available for checking:
  'ComplexHeatmap', 'rmarkdown', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'plotly', 'scales', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat', 'devtools', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr', 'sf'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'vdiffr', 'devtools', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'TraMineR', 'ggplot2', 'dplyr', 'ggh4x', 'ggrepel', 'ggtext',
  'patchwork', 'tidyr', 'usethis'

Packages suggested but not available for checking:
  'covr', 'ggthemes', 'hrbrthemes', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'tidyr', 'dplyr', 'testthat', 'rmarkdown', 'vdiffr', 'ggdendro',
  'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'testthat', 'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggmap', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2', 'kohonen'

Packages suggested but not available for checking: 'devtools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'ggplot2', 'rosm', 'scales', 'tidyr'

Packages suggested but not available for checking:
  'prettymapr', 'rmarkdown', 'raster', 'terra', 'testthat', 'dplyr',
  'ggrepel', 'stars', 'covr', 'vdiffr', 'lwgeom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'photobiology', 'ggplot2', 'photobiologyWavebands', 'scales',
  'ggrepel', 'lubridate'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr'

Packages suggested but not available for checking:
  'covr', 'Hmisc', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggcorrplot', 'ggplot2', 'ggrepel', 'ggside', 'ggsignif',
  'paletteer', 'patchwork', 'statsExpressions', 'tidyr'

Packages suggested but not available for checking:
  'afex', 'BayesFactor', 'lme4', 'metaBMA', 'metaplus', 'PMCMRplus',
  'rmarkdown', 'rstantools', 'testthat', 'vdiffr', 'WRS2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom.helpers', 'dplyr', 'ggplot2', 'patchwork', 'scales',
  'stringr', 'tidyr'

Packages suggested but not available for checking:
  'broom', 'labelled', 'reshape', 'rmarkdown', 'testthat', 'spelling',
  'survey', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘scales’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'survey', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'ggplot2', 'patchwork', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'scales', 'spelling', 'testthat', 'tidycmprsk',
  'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'dplyr', 'plyr', 'reshape2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'compositions', 'latex2exp', 'plyr', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'gridtext', 'scales'

Packages suggested but not available for checking:
  'cowplot', 'dplyr', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'miniUI', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales', 'stringr'

Packages suggested but not available for checking:
  'dplyr', 'covr', 'lintr', 'pander', 'rmarkdown', 'spelling',
  'testthat', 'tidyr', 'vdiffr', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'stringr', 'tikzDevice'

Packages suggested but not available for checking:
  'covr', 'magick', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'ggthemes', 'prettydoc'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'tidyr', 'dplyr', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘AICcmodavg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘viridis’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'aplot', 'yulab.utils'

Packages suggested but not available for checking:
  'testthat', 'plotly', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'dplyr', 'htmltools'

Packages suggested but not available for checking:
  'lubridate', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'gridtext', 'Rcpp', 'scales'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggrepel', 'wordcloud', 'wordcloud2',
  'covr', 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'pedigreemm', 'sparseinv', 'e1071', 'stringi'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'fs', 'lubridate', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'styler', 'usethis', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CompQuadForm', 'Rcpp'

Packages suggested but not available for checking:
  'refund', 'testthat', 'rmarkdown', 'bookdown', 'ggplot2', 'reshape2',
  'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘prismatic’

Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'rmarkdown', 'testthat', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CVXR', 'seqminer', 'RSpectra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'crul', 'graphql'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'mockery', 'rmarkdown', 'spelling', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'plyr', 'extraDistr', 'dplyr', 'reshape2'

Packages suggested but not available for checking:
  'BiasedUrn', 'igraph', 'rmarkdown', 'ggplot2', 'ggraph', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘chromote’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'RcppParallel', 'readr', 'stringi'

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Package required but not available: ‘xml2’

Packages suggested but not available for checking:
  'rgl', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'dplyr', 'phytools', 'sf', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'kableExtra', 'patchwork', 'testthat',
  'rmarkdown', 'rnaturalearth', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'dynutils', 'Rcpp', 'RcppXPtrUtils', 'readr', 'stringr',
  'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggforce', 'ggplot2', 'ggpubr', 'rstatix', 'scales',
  'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'qgraph', 'data.tree', 'MIIVsem', 'imputeTS', 'nloptr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyjs', 'rintrojs', 'miniUI', 'shinyWidgets',
  'rhandsontable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘EBImage’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'energy', 'readxl', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'DescTools', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Unknown package ‘IC2’ in Rd xrefs
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘permutations’

Packages suggested but not available for checking:
  'DAAG', 'dplyr', 'ggplot2', 'rmarkdown', 'spelling', 'stringi',
  'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geojsonsf', 'sf'

Packages suggested but not available for checking:
  'eurostat', 'ggplot2', 'lwgeom', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tm', 'RecordLinkage', 'stringr', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cppRouting', 'dplyr', 'igraph', 'leaflet', 'nabor', 'reshape2',
  'sf', 'stringr', 'tidygraph'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'crul', 'rmarkdown', 'dplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'spelling', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘diffr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'mockery', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'bookdown', 'dplyr', 'rmarkdown', 'stringi', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'stringr', 'mockery', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'miniUI', 'dplyr', 'shinyFiles', 'usethis'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'devtools', 'mockery'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'shiny', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat', 'rmarkdown', 'fs', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘targets’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RANN', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'MCMCpack', 'plyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'survey', 'ggplot2', 'Rmpfr', 'copula'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'qpdf'
Packages required but not available: 'kernlab', 'seqinr', 'ROCR', 'Rcpp'

Packages suggested but not available for checking:
  'rtracklayer', 'BSgenome', 'BSgenome.Hsapiens.UCSC.hg18.masked',
  'BSgenome.Hsapiens.UCSC.hg19.masked'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Ecdat', 'lubridate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'mlr3', 'RcppEigen'

Packages suggested but not available for checking:
  'SuperLearner', 'mlr3misc', 'DoubleML', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'GGally', 'dplyr', 'ggplot2', 'openxlsx', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'rmarkdown', 'skimr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) randPIT.Rd:52: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'glmnet', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'terra', 'Rcpp', 'raster', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spacefillr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘e1071’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GLDEX’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'optimx', 'lbfgsb3c', 'ape', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'TMB', 'mvabund', 'fishMod', 'nloptr', 'RcppEigen'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stringr', 'RcppEigen'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr', 'ggplot2', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) glmc.Rd:232: Escaped LaTeX specials: \&
checkRd: (-1) glmc.Rd:241: Escaped LaTeX specials: \&
checkRd: (-1) glmc.control.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) glmc.control.Rd:31: Escaped LaTeX specials: \$
checkRd: (-1) glmc.summaries.Rd:79: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Package suggested but not available for checking: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'lme4', 'lmerTest'
checkRd: (-1) summarylr.Rd:34: Lost braces
    34 | \item{method}{NULL or character vector of length 0, 1 or 2; may be code{"LRT"} or \code{"Rao"} or \code{c("LRT", "Rao")} to compute specified P-values.
       |                                                                        ^
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmlep.Rcheck/00install.out’ for details.
Packages suggested but not available for checking:
  'rmarkdown', 'pkgdown', 'effects', 'DHARMa'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'cowplot', 'ggforce', 'ggplot2', 'glmmTMB', 'lme4', 'scales'

Packages suggested but not available for checking:
  'cosinor', 'covr', 'DHARMa', 'dplyr', 'DT', 'flextable', 'ftExtra',
  'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Package suggested but not available for checking: ‘mlmRev’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'broom', 'broom.mixed', 'dplyr', 'ggplot2', 'RcppParallel',
  'reshape2', 'rstan', 'rstantools', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'bayesplot', 'rmarkdown', 'testthat', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'lme4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'minqa', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'lme4'
Packages required but not available:
  'lme4', 'bigmemory', 'Rcpp', 'ggplot2', 'reshape2', 'rstan',
  'stringr', 'rstantools', 'RcppParallel', 'RcppArmadillo',
  'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppEigen', 'SparseChol', 'RcppParallel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'car', 'ggplot2', 'ggpubr', 'glmmTMB', 'lme4', 'lmerTest', 'plotly',
  'qvalue'

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra', 'DESeq2', 'edgeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TMB', 'lme4', 'RcppEigen'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'mlmRev', 'reshape2', 'car',
  'DHARMa', 'effects', 'dotwhisker', 'broom', 'broom.mixed', 'plyr',
  'huxtable', 'mvabund'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'xgboost', 'smoof', 'mlrMBO', 'randomForestSRC', 'torch'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'effects', 'AER', 'lme4', 'censReg', 'plm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'logisticPCA', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘glmpca.Rmd’ using knitr

Quitting from lines 13-15 [unnamed-chunk-1] (glmpca.Rmd)
Error: processing vignette 'glmpca.Rmd' failed with diagnostics:
there is no package called 'ggplot2'
--- failed re-building ‘glmpca.Rmd’

SUMMARY: processing the following file failed:
  ‘glmpca.Rmd’

Error: Vignette re-building failed.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'AER', 'mlogit', 'dfidx', 'survey', 'lme4'

Packages suggested but not available for checking:
  'ggplot2', 'devtools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) ccancer.Rd:16: Lost braces
    16 |                          a factor with levels either \\code{F} (female) or code{M} (male)}
       |                                                            ^
checkRd: (-1) ccancer.Rd:16: Lost braces
    16 |                          a factor with levels either \\code{F} (female) or code{M} (male)}
       |                                                                                ^
checkRd: (-1) galapagos.Rd:4: Lost braces
     4 | \title{{Gal\'{a}pagos} Island species data}
       |              ^
checkRd: (-1) galapagos.Rd:6: Lost braces
     6 |   The number of species on the {Gal\'{a}pagos} Islands
       |                                ^
checkRd: (-1) galapagos.Rd:6: Lost braces
     6 |   The number of species on the {Gal\'{a}pagos} Islands
       |                                      ^
checkRd: (-1) galapagos.Rd:40: Lost braces
    40 |    {Gal\'{a}pagos} (the endemics). 
       |    ^
checkRd: (-1) galapagos.Rd:40: Lost braces
    40 |    {Gal\'{a}pagos} (the endemics). 
       |          ^
checkRd: (-1) galapagos.Rd:44: Lost braces
    44 |   Species number and endemism: The {Gal\'{a}pagos} Archipelago revisited.
       |                                          ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'stringr', 'dplyr', 'ggplot2', 'cplm'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rfast', 'SuppDists'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'ggplot2', 'caret'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'caret'

Packages suggested but not available for checking:
  'FactoMineR', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘lme4’
checkRd: (-1) coef.glmulti.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) consensus.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) getfit.Rd:14: Lost braces
    14 |   \item{object}{A fitted model object, of class \code{glm}, \code{lm} or code{glm.nb}}
       |                                                                              ^
checkRd: (-1) getfit.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-class.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-methods.Rd:14: Lost braces
    14 | code{glmulti} finds what are the \code{n} best models (the confidence set of models) among all possible models (the candidate set, as specified by the user).
       |     ^
checkRd: (-1) glmulti.Rd:99: Escaped LaTeX specials: \&
checkRd: (-1) summary.glmulti.Rd:72: Escaped LaTeX specials: \&
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'AER', 'gld'
Running examples in ‘glmx-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pregibon
> ### Title: Pregibon Distribution
> ### Aliases: dpregibon ppregibon qpregibon rpregibon
> ### Keywords: distribution
> 
> ### ** Examples
> 
> ## Koenker & Yoon (2009), Figure 2
> par(mfrow = c(3, 3))
> pregiboncurve <- function(a, b, from, to, n = 301) {
+   dp <- function(x) dpregibon(x, a = a, b = b)
+   curve(dp, from = from, to = to, n = n,
+     xlab = "", ylab = "",
+     main = paste("a = ", a, ", b = ", b, sep = ""))
+ }
> pregiboncurve(-0.25, -0.25,  -5, 65)
Error in loadNamespace(x) : there is no package called ‘gld’
Calls: pregiboncurve ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'spatstat.random', 'spatstat.explore', 'spatstat.geom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'GetoptLong'
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'dbplyr', 'dplyr', 'forecast', 'ggplot2', 'gtrendsR', 'lubridate',
  'RSQLite', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'genlasso', 'fda', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘fxregime’
Unavailable namespace imported from by a ':::' call: ‘fxregime’
  See the note in ?`:::` about the use of this operator.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'kableExtra', 'rvest', 'xml2'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'flextable', 'tidyr'

Packages suggested but not available for checking:
  'bookdown', 'officedown', 'testthat', 'rmarkdown', 'officer',
  'htmltools', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'readxl', 'rnaturalearth', 'sf', 'tidyr', 'tmap',
  'units'

Packages suggested but not available for checking:
  'htmlwidgets', 'mapedit', 'plotly', 's2', 'scales', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'RcppParallel', 'RcppEigen'

Packages suggested but not available for checking:
  'rmarkdown', 'magick', 'EBImage', 'qs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) getRiiGLPK.Rd:35: Lost braces; missing escapes or markup?
    35 |   Returns the current scale factor $r_{ii}$ for row \code{i} of the specified
       |                                       ^
checkRd: (-1) getSjjGLPK.Rd:35: Lost braces; missing escapes or markup?
    35 |   Returns the current scale factor $s_{jj}$ for column \code{j} of the
       |                                       ^
checkRd: (-1) setRiiGLPK.Rd:28: Lost braces; missing escapes or markup?
    28 |     Scale factor $r_{ii}$.
       |                     ^
checkRd: (-1) setSjjGLPK.Rd:28: Lost braces; missing escapes or markup?
    28 |     Scale factor $s_{jj}$.
       |                     ^
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'ape', 'mvSLOUCH'
Running examples in ‘GLSME-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GLSME-package
> ### Title: Generalized Least Squares with Measurement Error
> ### Aliases: GLSME-package
> ### Keywords: generalized least squares regression measurement error
> 
> ### ** Examples
> 
> n<-3 ## number of species
> apetree<-ape::rtree(n)
Error in loadNamespace(x) : there is no package called ‘ape’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'covr', 'dplyr', 'rmarkdown', 'rvest', 'spelling', 'stringr',
  'testthat', 'xml2'
Running examples in ‘gluedown-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: md_paragraph
> ### Title: Markdown paragraphs breaks
> ### Aliases: md_paragraph
> 
> ### ** Examples
> 
> md_paragraph(stringr::sentences[1:3])
Error in loadNamespace(x) : there is no package called ‘stringr’
Calls: md_paragraph ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'RSQLite', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'scales', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'tidyr', 'dplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘gargle’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'Hmisc', 'testthat', 'rmarkdown', 'shiny', 'shinydashboard',
  'shinyBS', 'rhandsontable', 'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'covr', 'dplyr', 'gsDesign', 'gt', 'kableExtra', 'ragg', 'rmarkdown',
  'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘PolynomF’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'glmnet', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Packages required but not available: 'Rcpp', 'RSpectra', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available: 'gstat', 'compositions'

Packages suggested but not available for checking:
  'FNN', 'JADE', 'DescTools', 'rmarkdown', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'stringr', 'tidyr', 'visNetwork'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'htmlTable', 'Hmisc', 'lubridate', 'rmarkdown', 'stringr'

Packages suggested but not available for checking: 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'CompQuadForm', 'RcppArmadillo'

Packages suggested but not available for checking:
  'SeqArray', 'SeqVarTools', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘minqa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘car’
checkRd: (-1) ATEgel.Rd:24: Lost braces
    24 | \item{g}{A formula as \code{y~z}, where code{y} is the response and
       |                                             ^
Note: skipping ‘gmm_with_R.rnw’ due to unavailable dependencies: 'car'
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'maxLik', 'mlogit'

Packages suggested but not available for checking: 'AER', 'car', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'gplots', 'lme4'
Found the following significant warnings:
  Warning: 'is.R' is deprecated.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gmodels.Rcheck/00install.out’ for details.
Running examples in ‘gmodels-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: estimable
> ### Title: Contrasts and estimable linear functions of model coefficients
> ### Aliases: estimable estimable.default estimable.mlm
> ### Keywords: models regression
> 
> ### ** Examples
> 
> # setup example data
> y <- rnorm(100)
> x <-  cut(rnorm(100, mean=y, sd=0.25),c(-4,-1.5,0,1.5,4))
> levels(x) <- c("A","B","C","D")
> x2 <- rnorm(100, mean=y, sd=0.5)
> 
> # simple contrast and confidence interval
> reg <- lm(y ~ x)
> estimable(reg, c(    0,   1,    0,   -1) )  # full coefficient vector
            Estimate Std. Error   t value DF Pr(>|t|)
(0 1 0 -1) -2.631369  0.2298629 -11.44756 96        0
> estimable(reg, c("xB"=1,"xD"=-1) )          # just the nonzero terms
            Estimate Std. Error   t value DF Pr(>|t|)
(0 1 0 -1) -2.631369  0.2298629 -11.44756 96        0
> 
> 
> # Fit a spline with a single knot at 0.5 and plot the *pointwise*
> # confidence intervals
> library(gplots)
Error in library(gplots) : there is no package called ‘gplots’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggrepel', 'geometry', 'ggplot2', 'rgl', 'Rfast', 'plyr', 'tidyr',
  'dplyr'

Packages suggested but not available for checking:
  'tikzDevice', 'rmarkdown', 'roxygen2', 'ggsci', 'scales', 'pdftools',
  'testthat', 'webshot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'openxlsx', 'plyr', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gmp', 'mvp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘Rmpfr’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gmp.Rcheck/00install.out’ for details.
Packages required but not available: 'transport', 'igraph'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'magick', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinydashboard', 'shinyjs', 'shinycssloaders'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking: 'qgraph', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘mvnfast’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmmTMB', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'fs', 'stringi', 'wv', 'rjson', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'simts'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggforce', 'ggplot2', 'ggpubr', 'igraph', 'viridis', 'wordcloud'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) GNE.ceq.Rd:50: Lost braces
    50 | (KKT) system denoted by \eqn{H(z)=0}, for \eqn{z \in \Omega} where eqn{z} is formed by the players strategy 
       |                                                                       ^
checkRd: (-1) GNE.nseq.Rd:76: Lost braces
    76 | (KKT) system denoted by \eqn{\Phi(z)=0}{Phi(z)=0}, where eqn{z} is formed by the players strategy 
       |                                                             ^
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'testthat', 'vcdExtra'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'keras', 'tensorflow', 'copula'

Package suggested but not available for checking: ‘nvmix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'minqa', 'kableExtra'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'devtools', 'vcr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘rmarkdown’
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'Rmpfr', 'gmp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ape', 'ggplot2', 'ggrepel', 'igraph', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'Hmisc'

Packages suggested but not available for checking:
  'vegdata', 'BiodiversityR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rrpack', 'glmnet', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'quanteda', 'tm'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'epiR', 'reshape', 'stringr'

Packages suggested but not available for checking:
  'dfidx', 'mlogit', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'copula', 'yarrr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘CompQuadForm’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'fda.usc', 'glmnet', 'ks', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'rmarkdown', 'rhandsontable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) BVDWSTOXX.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:16: Escaped LaTeX specials: \& \&
checkRd: (-1) BVDWSTOXX.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:37: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'covr', 'rmarkdown', 'pixiedust', 'igraph',
  'ggraph', 'migraph', 'broom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'fastlogranktest'

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'covr', 'devtools', 'dockerfiler', 'pkgload', 'pkgdown', 'rcmdcheck',
  'roxygen2', 'rmarkdown', 'rsconnect', 'spelling', 'stringr',
  'testthat', 'attachment', 'usethis', 'fs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'cowplot', 'dplyr', 'flexsurv', 'ggplot2', 'ggsci',
  'modelr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'socviz', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'imager', 'rgl', 'concaveman', 'prodlim', 'splines2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘classInt’

Packages suggested but not available for checking:
  'testthat', 'car', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'covr', 'lintr', 'rcmdcheck', 'xml2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'copula', 'maxLik', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages required but not available:
  'dplyr', 'googleAuthR', 'memoise', 'tidyr', 'usethis'

Packages suggested but not available for checking:
  'bigQueryR', 'covr', 'ganalytics', 'googleCloudStorageR',
  'htmlwidgets', 'miniUI', 'rmarkdown', 'shiny', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'gargle', 'memoise'

Packages suggested but not available for checking:
  'bigQueryR', 'covr', 'devtools', 'googleAnalyticsR', 'miniUI',
  'rmarkdown', 'roxygen2', 'shiny', 'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'googleAuthR', 'googleCloudStorageR', 'googlePubsubR', 'plumber',
  'usethis'

Packages suggested but not available for checking:
  'miniUI', 'rmarkdown', 'shiny', 'targets', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘googleAuthR’

Packages suggested but not available for checking:
  'fs', 'googleComputeEngineR', 'readr', 'rmarkdown', 'testthat',
  'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘googleAuthR’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'mockery', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'googleAuthR'

Packages suggested but not available for checking:
  'covr', 'googleCloudStorageR', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gargle’

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'pkgdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'xml2', 'rvest', 'EBImage'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘googleAuthR’

Packages suggested but not available for checking:
  'cld2', 'testthat', 'rmarkdown', 'rvest', 'shiny', 'shinyjs',
  'tidyr', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'sf', 'sfheaders', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘readxl’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘googleAuthR’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'shiny', 'future', 'promises'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'gargle', 'googledrive'

Packages suggested but not available for checking:
  'readr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'googleAuthR', 'dplyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'googleway', 'htmlwidgets', 'sf', 'stringr', 'webshot2',
  'raster', 'ColorNameR', 'schemr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'shiny', 'httpuv', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Errors in running code in vignettes:
when running code in ‘googleVis_examples.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘googleVis_intro.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘googleVis_examples.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘googleVis_intro.Rmd’ using ‘UTF-8’... failed to complete the test
Packages required but not available:
  'htmlwidgets', 'htmltools', 'shiny', 'scales', 'googlePolylines'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggdendro'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BradleyTerry2', 'DescTools', 'ggplot2', 'ggparty', 'ggrepel',
  'PlackettLuce', 'tidyr', 'patchwork'

Packages suggested but not available for checking:
  'climatrends', 'ClimMobTools', 'chirps', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking:
  'reticulate', 'testthat', 'crosstalk'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'GO.db', 'ggraph', 'igraph', 'dplyr', 'biomaRt', 'annotate',
  'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pander', 'stringi', 'gms'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rgenoud', 'KrigInv', 'ks', 'rgl'

Package suggested but not available for checking: ‘DiceOptim’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RJSONIO’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xgboost', 'spatstat.geom', 'Rcpp', 'RcppArmadillo', 'ggplot2',
  'cowplot', 'Rfast', 'SuperLearner', 'wCorr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'cubature', 'caret', 'mirt', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'fields', 'interp', 'fda', 'fda.usc', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lhs’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'GPareto', 'KrigInv'

Packages suggested but not available for checking: 'DiceOptim', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'FNN', 'RcppArmadillo'

Packages suggested but not available for checking:
  'fields', 'rmarkdown', 'testthat', 'maptools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'RSQLite', 'terra', 'dplyr', 'dbplyr'
Running examples in ‘gpkg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gpkg_table_pragma
> ### Title: Lazy Access to Tables by Name
> ### Aliases: gpkg_table_pragma gpkg_table_pragma.character
> ###   gpkg_table_pragma.SQLiteConnection gpkg_table_pragma.geopackage
> ###   gpkg_table gpkg_table.default gpkg_collect gpkg_tbl gpkg_rast
> ###   gpkg_vect
> 
> ### ** Examples
> 
> ## Don't show: 
> if (!inherits(try(requireNamespace("RSQLite", quietly = TRUE)), 'try-error') &&!inherits(try(requireNamespace("dbplyr", quietly = TRUE)), 'try-error') && !inherits(try(requireNamespace("terra", quietly = TRUE)), 'try-error')) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show: 
+ }) # examplesIf
> ## End(Don't show)
> 
> tf <- tempfile(fileext = ".gpkg")
> 
> r <- terra::rast(system.file("extdata", "dem.tif", package = "gpkg"))
Error in loadNamespace(x) : there is no package called ‘terra’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘tinytest.R’ [1s/1s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if (requireNamespace("tinytest", quietly = TRUE)) {
  +   tinytest::test_package("gpkg")
  + }
  
  test_gpkg.R...................    0 tests    Error in eval(expr, envir = e) : 
    requireNamespace("RSQLite", quietly = TRUE) is not TRUE
  Calls: <Anonymous> ... run_test_dir -> lapply -> FUN -> eval -> eval -> stopifnot
  Execution halted
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'plyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'lhs', 'RcppArmadillo'

Package suggested but not available for checking: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rstan’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rfast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rstan’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plotly', 'tidyr', 'crosstalk', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'nbpMatching'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'geosphere', 'htmlwidgets', 'leaflet', 'leaflet.extras', 'plyr',
  'sf', 'suncalc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'nngeo', 'raster', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'cmdstanr'
Packages required but not available:
  'bslib', 'htmltools', 'htmlwidgets', 'shiny', 'shiny.i18n',
  'stringr', 'waiter'

Packages suggested but not available for checking:
  'shinytest2', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'httptest2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'torch', 'tensorflow', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'sparseinv', 'fields', 'GpGp', 'FNN', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'rvest', 'lubridate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'graphql', 'pryr'

Packages suggested but not available for checking:
  'plumber', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'seqinr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'extraDistr', 'ggplot2', 'ggthemes', 'plyr', 'reshape2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sparseMatrixStats', 'RANN', 'spam'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Title field: should not end in a period.
checkRd: (-1) grade-package.Rd:51-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:58-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:72-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:79-81: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘testthat’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'car', 'Hmisc', 'lme4', 'lmerTest', 'patchwork', 'tidyr'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'pbkrtest', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lime', 'quanteda', 'reticulate'

Packages suggested but not available for checking:
  'quanteda.textmodels', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gRbase', 'igraph', 'broom', 'Rcpp', 'RcppArmadillo', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'igraph', 'sf', 'raster', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'ggthemes', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘igraph’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'patchwork', 'plyr', 'reshape2', 'scales', 'cowplot'

Packages suggested but not available for checking:
  'rmarkdown', 'Seurat', 'ComplexHeatmap', 'ggrepel', 'DESeq2',
  'clusterProfiler', 'biomaRt', 'msigdbr', 'fgsea', 'rclipboard',
  'cubature', 'DT', 'htmltools', 'monocle', 'shiny', 'ggrastr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Granger.inference.difference.Rd:65: Lost braces; missing escapes or markup?
    65 | 	least one root larger than one) on bootstrapped \verb{x} and {y}.
       |                                                                      ^
checkRd: (-1) Granger.inference.difference.Rd:68: Lost braces; missing escapes or markup?
    68 | 	least one root larger than one) on bootstrapped \verb{x} and {z}.
       |                                                                      ^
checkRd: (-1) Granger.inference.difference.Rd:71: Lost braces; missing escapes or markup?
    71 | 	least one root larger than one) on bootstrapped \verb{x}, \verb{y} and {z}.
       |                                                                                ^
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'stringr'

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'shiny', 'shinyWidgets', 'rmarkdown', 'kableExtra', 'summarytools',
  'dplyr', 'ggpubr', 'Hmisc', 'ggplot2', 'reshape2', 'desplot',
  'PairedData'

Packages suggested but not available for checking: 'shinytest', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘htmlwidgets’

Package suggested but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'adegenet', 'ggplot2', 'stringr', 'igraph', 'spatstat.geom',
  'spatstat.linnet', 'pegas', 'tidyr', 'sf', 'hierfstat', 'gdistance',
  'raster', 'ecodist'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'blockmodels', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'ggplot2', 'lhs'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

Packages suggested but not available for checking:
  'testthat', 'covr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'googlePolylines', 'dplyr'

Packages suggested but not available for checking:
  'sf', 'geojsonsf', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'osqp', 'glmnet', 'edmcr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'ggplot2', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'glmnet', 'qgraph', 'dplyr', 'igraph', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'oaqc', 'testthat', 'ggraph', 'ggplot2', 'rmarkdown', 'uwot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ROptSpace’

Package suggested but not available for checking: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggrepel', 'reshape2', 'dplyr'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'FactoMineR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gplots', 'igraph'

Packages suggested but not available for checking:
  'devtools', 'prettydoc', 'R.rsp', 'rmarkdown', 'testthat', 'scales',
  'vdiffr'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'igraph', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'scales', 'rmarkdown', 'testthat', 'dplyr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'patchwork', 'mvnfast', 'stringr'

Packages suggested but not available for checking:
  'gamm4', 'lme4', 'testthat', 'vdiffr', 'rmarkdown', 'GJRM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'geosphere'

Packages suggested but not available for checking:
  'devtools', 'spex', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'doRNG', 'dplyr', 'forecast', 'GA', 'tsfeatures', 'tsibble', 'shiny'

Packages suggested but not available for checking:
  'feasts', 'rmarkdown', 'shinydashboard'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'distributional', 'fable', 'fabletools'
Package required but not available: ‘forecast’

Packages suggested but not available for checking:
  'fst', 'rmarkdown', 'scales', 'survey', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gRain', 'gRbase'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lubridate', 'dplyr', 'tsibble', 'tidyr', 'ggplot2', 'stringr',
  'lvplot', 'ggridges', 'shiny'

Packages suggested but not available for checking:
  'tsibbledata', 'testthat', 'covr', 'rmarkdown', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'censReg', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'broom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'fields', 'ggplot2', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'Rcpp', 'RcppEigen', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nloptr', 'cubature'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gRbase', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘RBGL’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'furrr', 'future', 'ggplot2', 'optimization', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'imagine', 'raster', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'future', 'ggplot2', 'RSpectra', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spelling', 'igraph', 'tidygraph', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'nbpMatching', 'survey', 'stringr', 'stringi', 'kernlab'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'swirlify', 'swirl', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dqrng', 'Rcpp', 'ggplot2', 'plotly', 'shiny', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'R.rsp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'RcppEigen',
  'StanHeaders'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FME', 'reshape2', 'ggplot2', 'sf', 'dplyr', 'tmap', 'classInt',
  'networkD3'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Gmisc', 'broom', 'Epi', 'dplyr', 'htmlTable', 'Hmisc', 'rms',
  'stringr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'rmarkdown', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘philentropy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gremlin.Rcheck/00install.out’ for details.
Packages required but not available: 'igraph', 'blockmodels', 'aricode'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Hmisc', 'rms', 'latticeExtra', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'greta', 'tensorflow'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'greta', 'tensorflow'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'reticulate', 'tensorflow'

Packages suggested but not available for checking:
  'bayesplot', 'covr', 'DiagrammeR', 'DiagrammeRsvg', 'extraDistr',
  'fields', 'ggplot2', 'MCMCpack', 'mockery', 'rmarkdown', 'spelling',
  'testthat', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rmarkdown', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'nloptr', 'Rcpp'

Packages suggested but not available for checking:
  'smooth', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'plotly', 'shiny', 'shinydashboard', 'shinyWidgets',
  'ggplot2', 'readxl', 'particle.swarm.optimisation', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'DiagrammeR', 'rdd', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'fields', 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Packages suggested but not available for checking:
  'ggplot2', 'egg', 'testthat'
Package required but not available: ‘polyclip’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'magick', 'pdftools'
Packages required but not available: 'Rcpp', 'Ckmeans.1d.dp', 'dqrng'

Packages suggested but not available for checking:
  'FunChisq', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'memoise', 'sf'

Packages suggested but not available for checking:
  'ambient', 'magick', 'ragg', 'rmarkdown', 'svglite', 'testthat',
  'vdiffr'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'reshape2', 'plyr', 'shinythemes', 'BiasedUrn',
  'shinyBS'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'shinyjs'

Packages suggested but not available for checking:
  'shinydashboard', 'shinytest2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) NEWS.Rd:669: Lost braces; missing escapes or markup?
   669 |     parameters are rounded so they belong to one of {0, 0.5, 1}. (Simon)
       |                                                     ^
checkRd: (-1) gradients.Rd:96-99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gradients.Rd:100-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gradients.Rd:104-107: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'stringr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gRbase', 'igraph', 'gRain', 'Rcpp', 'RcppArmadillo', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'usethis', 'GenSA', 'GA'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'bookdown', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'rdist', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking:
  'e1071', 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rrcov’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'ape'

Package suggested but not available for checking: ‘phangorn’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'MLmetrics', 'visNetwork', 'plyr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'plyr', 'rearrr', 'tidyr'

Packages suggested but not available for checking:
  'broom', 'covr', 'ggplot2', 'lmerTest', 'rmarkdown', 'testthat',
  'xpectr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'qvalue', 'RcppEigen'

Package suggested but not available for checking: ‘snplist’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'clusterProfiler', 'dplyr', 'org.Mm.eg.db', 'pheatmap', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘rjags’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'spam', 'ggplot2', 'reshape2', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'patchwork', 'rmarkdown', 'testthat'
Running examples in ‘growR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_lines
> ### Title: Add data to a ggplot
> ### Aliases: add_lines
> 
> ### ** Examples
> 
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'dplyr', 'ggplot2', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > ##
  > ##  Unit testing file
  > ##
  > ##  Created by Daniel Rodríguez Pérez on 7/12/2014.
  > ##
  > ##  Copyright (c) 2014 Daniel Rodríguez Pérez.
  > ##
  > ##  This program is free software: you can redistribute it and/or modify
  > ##  it under the terms of the GNU General Public License as published by
  > ##  the Free Software Foundation, either version 3 of the License, or
  > ##  (at your option) any later version.
  > ##
  > ##  This program is distributed in the hope that it will be useful,
  > ##  but WITHOUT ANY WARRANTY; without even the implied warranty of
  > ##  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > ##  GNU General Public License for more details.
  > ##
  > ##  You should have received a copy of the GNU General Public License
  > ##  along with this program.  If not, see <http://www.gnu.org/licenses/>
  > ## 
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dae', 'GGally', 'ggplot2', 'Hmisc', 'JOPS', 'readxl', 'reshape',
  'stringi'

Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'scales'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘FME’

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DiagrammeR', 'DiagrammeRsvg', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid package aliases in Rd file 'fit_grp.Rd':
  ‘grplasso-package’
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) Birthwt.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:21-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:26-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:29-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:35-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Birthwt.Rd:40-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Lung.Rd:14-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Lung.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Lung.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Lung.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Lung.Rd:25-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Lung.Rd:28-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Lung.Rd:31-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Lung.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Lung.Rd:36-38: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'pander', 'SLOPE'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/grr.Rcheck/00install.out’ for details.
Packages required but not available:
  'shiny', 'shinyWidgets', 'bslib', 'DT', 'mirt', 'sirt', 'ggplot2',
  'dplyr', 'readr', 'tidyr', 'stringr', 'flextable', 'gt', 'officer',
  'openxlsx', 'sass'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) GRS.Powerfunc.Rd:22: Lost braces
    22 | {Power: }{Matrix of power values plotted}
       |          ^
Packages required but not available: 'glmnet', 'ranger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) fmddisc.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:46: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:54: Escaped LaTeX specials: \&
Found the following files/directories:
  ‘FMD mag discontinuities_disc.png’ ‘FMD mag
  discontinuities_disc1.res’ ‘FMD mag discontinuities_disc2.res’
  ‘IDYLLWILD_bvmed.png’ ‘IDYLLWILD_fig.png’ ‘Schuster's
  diagram_schu.png’ ‘hour.res’
Package suggested but not available for checking: ‘rgl’
checkRd: (-1) qdb.p.correct.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{refpts}{a numeric vector used as a reference point to determine the correct side of the \code{qdb} for classifying \code{x}. The \code{length(refpts)} should be equal to {ncol(x)}. Default to \code{colMeans(x)}. }
       |                                                                                                                                                                                 ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'dplyr', 'tidyr', 'lubridate', 'stringr', 'ggplot2', 'trend'

Packages suggested but not available for checking:
  'ggridges', 'ggHoriPlot', 'ggthemes', 'kableExtra', 'rmarkdown',
  'sf', 'testthat', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Objects in \usage without \alias in Rd file 'GSA.internal.Rd':
  ‘est.s0’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘e1071’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gsDesign', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RSpectra’

Packages suggested but not available for checking:
  'rmarkdown', 'igraph', 'missSBM', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'stringr', 'fastDummies', 'fclust', 'devtools'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'gsDesign'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘msigdbr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'gsDesign', 'gt', 'tidyr', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'kableExtra', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'gt', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'kableExtra', 'ragg', 'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'aplot', 'DOSE', 'dplyr', 'ggplot2', 'ggpp', 'ggrepel', 'ggsci',
  'reshape2', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘memoise’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ade4’
Running examples in ‘gSeg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gSeg
> ### Title: Graph-Based Change-Point Detection
> ### Aliases: gSeg
> 
> ### ** Examples
> 
> 
> data(Example)
> # Five examples, each example is a n-length sequence.
> # Ei (i=1,...,5): an edge matrix representing a similarity graph constructed on the
> # observations in the ith sequence.  
> # The following code shows how the Ei's were constructed.
> 
> require(ade4) 
Loading required package: ade4
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘ade4’
> # For illustration, we use 'mstree' in this package to construct the similarity graph.
> # You can use other ways to construct the graph.
> 
> ## Sequence 1: change in mean in the middle of the sequence.
> d = 50
> mu = 2
> tau = 100
> n = 200
> set.seed(500)
> y = rbind(matrix(rnorm(d*tau),tau), matrix(rnorm(d*(n-tau),mu/sqrt(d)), n-tau))
> y.dist = dist(y)
> E1 = mstree(y.dist)
Error in mstree(y.dist) : could not find function "mstree"
Execution halted
Packages required but not available: 'SAM', 'penalized'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rrcov', 'cellWise', 'ggplot2', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'testthat', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'imager', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'
checkRd: (-1) lisiecki2005.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lisiecki2005.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lisiecki2005.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:29: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Malformed Description field: should contain one or more complete sentences.
Packages suggested but not available for checking:
  'dplyr', 'spelling', 'ggplot2', 'rmarkdown', 'testthat', 'tidyr'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘tidyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'FactoMineR', 'ggplot2', 'MLmetrics', 'reshape2'

Packages suggested but not available for checking:
  'patchwork', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'visNetwork', 'ComplexHeatmap', 'devtools'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'reshape2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'sftime', 'spacetime', 'stars', 'FNN'

Packages suggested but not available for checking:
  'fields', 'raster', 'future', 'future.apply'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ROCR’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'GGally', 'future', 'doRNG', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'profvis', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) artset1987.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:12: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) gte.Rd:98: Lost braces; missing escapes or markup?
    98 | \code{left} and {right} for illustrative purpose), one would need a third variable (\code{status}) taking the value 0 
       |                 ^
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘ade4’
Running examples in ‘gTestsMulti-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gTestsMulti
> ### Title: New graph-based multi-sample tests
> ### Aliases: gTestsMulti-package
> 
> ### ** Examples
> 
> 
> ## Mean difference in Gaussian distribution.
> d = 50
> mu = 0.2
> sam = 50
> 
> set.seed(500)
> X1 = matrix(rnorm(d*sam), sam)
> X2 = matrix(rnorm(d*sam,mu), sam)
> X3 = matrix(rnorm(d*sam,2*mu), sam)
> 
> data_list = list(X1, X2, X3)
> 
> # We use 'mstree' in 'ade4' package to construct the minimum spanning tree.
> require(ade4)
Loading required package: ade4
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘ade4’
> x = rbind(X1, X2, X3)
> E = mstree(dist(x))
Error in mstree(dist(x)) : could not find function "mstree"
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ade4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gt', 'dplyr', 'fontawesome', 'ggplot2', 'htmltools', 'paletteer',
  'scales'

Packages suggested but not available for checking:
  'covr', 'fs', 'rvest', 'sass', 'stringr', 'svglite', 'testthat',
  'tidyr', 'webshot2', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'furrr', 'future', 'gtfs2gps', 'sf', 'sfheaders', 'terra', 'units'

Packages suggested but not available for checking:
  'gtfstools', 'ggplot2', 'lwgeom', 'progressr', 'rmarkdown',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'furrr', 'future', 'gtfstools', 'Rcpp', 'units', 'sf', 'terra',
  'sfheaders', 'progressr', 'lwgeom'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'digest', 'dodgr', 'dplyr', 'ggplot2', 'lubridate', 'lwgeom',
  'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'sfheaders', 'units'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'car', 'gplots', 'SGP', 'taxize'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'gt', 'officer', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rvest’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fs', 'htmltools', 'htmlwidgets', 'juicyjuice', 'reactable',
  'sass', 'scales', 'xml2'

Packages suggested but not available for checking:
  'covr', 'digest', 'fontawesome', 'ggplot2', 'lubridate', 'magick',
  'paletteer', 'rmarkdown', 'rvest', 'shiny', 'testthat', 'tidyr',
  'webshot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom.helpers', 'dplyr', 'gtsummary', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'gt', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'anytime'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'broom.helpers', 'dplyr', 'gt', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'broom.mixed', 'car', 'covr', 'flextable', 'geepack', 'ggstats',
  'Hmisc', 'huxtable', 'kableExtra', 'lme4', 'mice', 'officer',
  'openxlsx', 'parsnip', 'rmarkdown', 'scales', 'spelling', 'survey',
  'testthat', 'tidycmprsk', 'workflows'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'lubridate', 'ggplot2', 'covr', 'scales',
  'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'sf', 'spdep', 'ade4', 'adegraphics', 'adespatial', 'car', 'effects',
  'rmarkdown', 'ggplot2', 'ggpcp', 'ggrepel', 'heplots', 'patchwork',
  'candisc', 'scales', 'dplyr', 'tidyr'
Running examples in ‘Guerry-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Guerry
> ### Title: Data from A.-M. Guerry, "Essay on the Moral Statistics of
> ###   France"
> ### Aliases: Guerry
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(car)
Error in library(car) : there is no package called ‘car’
Execution halted
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'fields', 'rmarkdown', 'testthat'
checkRd: (-1) PLSSVD.Rd:24: Lost braces; missing escapes or markup?
    24 | The number of low-dimension (k < {N, M, L}, Default: .minDim(X, Y))
       |                                  ^
checkRd: (-1) guidedPLS.Rd:33: Lost braces; missing escapes or markup?
    33 | The number of low-dimension (k < {N, M, L, O}, Default: .minDim(X1, X2, Y1, Y2))
       |                                  ^
checkRd: (-1) sPLSDA.Rd:24: Lost braces; missing escapes or markup?
    24 | The number of low-dimension (k < {N, M, L}, Default: .minDim(X, Y))
       |                                  ^
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'readr', 'dplyr'

Packages suggested but not available for checking:
  'fs', 'rmarkdown', 'quarto', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'nloptr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'svglite', 'DT', 'excelR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following files/directories:
  ‘RRprof.out’
checkRd: (-1) gumbel.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gumbel.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gumbel.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gumbel.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gumbel.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gumbel.Rd:75: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'stringr', 'reshape2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'ape', 'ggrepel'

Packages suggested but not available for checking: 'ade4', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'units'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'dplyr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'readr', 'stringr', 'urltools'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat', 'tidyr', 'tidytext'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'adaptMCMC', 'drc', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lubridate', 'tsDyn'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'eda4treeR', 'lme4'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'htmlwidgets', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggrepel', 'dplyr', 'tidyr', 'scales'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) esSim.Rd:81: Lost braces; missing escapes or markup?
    81 | \eqn{83} SNPs are in cluster {-}, \eqn{714} SNPs are in cluster \eqn{0},
       |                              ^
checkRd: (-1) esSimDiffPriors.Rd:91: Lost braces; missing escapes or markup?
    91 | \eqn{64} SNPs are in cluster {-}, \eqn{708} SNPs are in cluster \eqn{0},
       |                              ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'ggplot2', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mombf', 'Rcpp', 'RcppArmadillo', 'fastglm'

Package suggested but not available for checking: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'rmarkdown', 'RSQLite', 'kableExtra', 'openxlsx'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'urltools', 'stringr', 'dplyr', 'tidyr', 'lubridate', 'plyr',
  'testthat'

Packages suggested but not available for checking:
  'httptest', 'spelling', 'covr', 'rmarkdown', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'leaflet', 'leaflet.extras', 'miniUI', 'nhdplusTools',
  'scales', 'sf', 'shiny', 'shinyWidgets', 'tidyr', 'units',
  'promises', 'elevatr', 'terra'

Packages suggested but not available for checking: 'spelling', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'EnvStats', 'lmomco', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'memoise', 'gWidgets2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gdsfmt', 'SNPRelate', 'ggplot2', 'plotly', 'RcppRoll', 'piggyback'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'geosphere', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'sf', 'spacetime', 'spdep', 'spatialreg', 'FNN',
  'RcppArmadillo'

Package suggested but not available for checking: ‘gstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'golem', 'shiny', 'DT', 'htmltools', 'shinydashboard', 'sf', 'dplyr',
  'plotly', 'crosstalk', 'viridis', 'leaflet', 'shinyjs', 'Rcpp',
  'pkgload'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'GWmodel', 'plm'

Packages suggested but not available for checking:
  'rmarkdown', 'rgeos', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'broom', 'reshape2', 'plotROC', 'kableExtra', 'future',
  'future.apply', 'ggrepel', 'cowplot', 'car', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qpdf', 'glmnet'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'geometry', 'lubridate', 'officer', 'raster', 'readxl',
  'rhandsontable', 'sf', 'shiny', 'shinycssloaders', 'shinydashboard',
  'shinyjs'

Package suggested but not available for checking: ‘RSQLite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following files/directories:
  ‘testdata1.txt’ ‘testdata2.txt’ ‘testdata3.txt’
Packages required but not available: 'Rcpp', 'prodlim', 'RcppArmadillo'

Packages suggested but not available for checking:
  'BinaryDosage', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'cxhull', 'Morpho', 'Rcpp', 'rgl', 'Rvcg', 'RCDT'

Packages suggested but not available for checking:
  'arrangements', 'rmarkdown', 'trekcolors', 'uniformly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘reticulate’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'rgl', 'plot3Drgl', 'DT', 'IRdisplay', 'htmltools',
  'plotly', 'repr', 'scales'
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'geojsonsf', 'sf', 'tidyr', 'V8'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'igraph', 'stars', 'sf', 'Rcpp', 'raster'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘future.apply’

Packages suggested but not available for checking:
  'covr', 'testthat', 'httptest', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'future.apply', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'future', 'ggplot2', 'msigdbr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘copula’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'pegas', 'Rcpp', 'shiny', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘openxlsx’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'ggplot2', 'latex2exp', 'reshape2', 'readr', 'readxl',
  'shiny', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'covr', 'digest', 'pander', 'rmarkdown',
  'shinycssloaders', 'shinyhelper', 'shinyjs', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'pander'

Packages suggested but not available for checking:
  'ape', 'dplyr', 'rmarkdown', 'testthat', 'vdiffr', 'roxyglobals'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'patchwork', 'Rcpp', 'stringr', 'RcppArmadillo',
  'roptim'

Packages suggested but not available for checking: 'ggrastr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'origami', 'glmnet', 'stringr', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'future', 'ggplot2', 'dplyr', 'tidyr',
  'SuperLearner'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'future.apply', 'hal9001', 'origami', 'rsample',
  'scales'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'stringr', 'covr', 'future'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘scales’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'tidysmd'

Packages suggested but not available for checking:
  'covr', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'lme4', 'amap', 'nbpMatching', 'lmerTest'
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.ga.breed’ ‘.ga.fitness’ ‘.ga.init’ ‘.ga.mutate’ ‘.ga.step’
  ‘.ga.weight’
Packages required but not available: 'shiny', 'shinyWidgets'

Packages suggested but not available for checking: 'testthat', 'shinytest2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'crul', 'xml2', 'urltools'

Packages suggested but not available for checking: 'testthat', 'jsonld'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'caTools', 'devtools', 'pkgload', 'rmarkdown', 'ROCR', 'testthat'
Running ‘runit.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggplot2', 'igraph', 'magick', 'mc2d', 'Rcpp', 'reshape2',
  'Rfast', 'rjags', 'stringr', 'tidyr', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'tidyr', 'snakecase'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'car', 'ggplot2', 'olsrr', 'ggpubr', 'devtools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ff’

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'ggplot2', 'patchwork'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haplo.stats’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'DT', 'RJSONIO'

Packages suggested but not available for checking: 'rmarkdown', 'openxlsx'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘pedigree’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘rms’

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Packages required but not available: 'ape', 'phangorn'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'archive', 'dplyr', 'sf', 'terra', 'units', 'xml2'

Packages suggested but not available for checking:
  'covr', 'httptest2', 'rmarkdown', 'testthat', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'daltoolbox', 'TSPred', 'tsmp', 'dtwclust', 'rugarch', 'forecast',
  'ggplot2', 'stringr', 'dplyr', 'reticulate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'devtools', 'modeldata', 'recipes', 'rmarkdown', 'roxygen2',
  'testthat', 'usethis'
Running examples in ‘hardhat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: default_recipe_blueprint
> ### Title: Default recipe blueprint
> ### Aliases: default_recipe_blueprint mold.recipe
> 
> ### ** Examples
> 
> library(recipes)
Error in library(recipes) : there is no package called ‘recipes’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'mice', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ape', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'Rcpp', 'dplyr', 'cowplot', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'Seurat', 'testthat', 'rmarkdown', 'ggthemes', 'ggrepel',
  'patchwork', 'tidyverse', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'ggtree', 'dplyr', 'tidyr'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Running ‘accessors.R’ [0s/1s]
  Running ‘clear.R’ [0s/1s]
  Running ‘has.key.R’ [0s/1s]
  Running ‘set.R’ [0s/1s]
Running the tests in ‘tests/accessors.R’ failed.
Complete output:
  > library(hash)
  hash-2.2.6.3 provided by Decision Patterns
  
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Running the tests in ‘tests/clear.R’ failed.
Complete output:
  > 
  > library(hash)
  hash-2.2.6.3 provided by Decision Patterns
  
  > library( testthat )
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘readr’

Packages suggested but not available for checking:
  'covr', 'fs', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'nloptr', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'estimatr', 'glmnet', 'ggplot2', 'stringr', 'nloptr',
  'RcppEigen'

Packages suggested but not available for checking: 'rmarkdown', 'broom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'future', 'future.apply', 'ggplot2', 'plyr', 'progressr',
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'tidyr', 'RcppEigen',
  'StanHeaders'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'ggplot2', 'RcppEigen', 'StanHeaders'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘R2jags’

Packages suggested but not available for checking: 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) deff.sigma.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:35: Lost braces in \itemize; meant \describe ?
Packages suggested but not available for checking:
  'mcmcsae', 'survey', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'randnet', 'RSpectra', 'data.tree', 'stringr', 'dendextend'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'shiny', 'colourpicker'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'diversitree', 'flexsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rstan’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘e1071’

Package suggested but not available for checking: ‘klaR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'R2jags', 'gplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘bigstatsr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'hdm', 'caret'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'ggthemes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rARPACK’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'Rtsne'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'fst', 'readr', 'dreamerr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'easy.utils', 'MatrixExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'reshape2'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'Rcpp', 'roll', 'stringr', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'missRanger', 'plyr', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'usethis', 'missForest', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'NPCirc', 'rgl', 'Directional'

Packages suggested but not available for checking: 'ggplot2', 'DirStats'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'RcppArmadillo', 'RcppEnsmallen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'dqrng', 'RcppEigen'

Package suggested but not available for checking: ‘roxygen2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'bama', 'genlasso', 'hdi', 'mediation'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'ggplot2', 'Rcpp', 'Rglpk', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr', 'tidyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RSpectra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qvalue’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'penalized', 'ggplot2'

Packages suggested but not available for checking: 'ragg', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘HadamardR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'FactoMineR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggjoy', 'ggplot2', 'stringr', 'ggridges', 'ggpubr',
  'Hmisc', 'questionr', 'MCMCpack', 'Rcpp', 'tidyr', 'tidyverse',
  'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ks', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'EstimDiagnostics'
Running examples in ‘HDShOP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_frontier
> ### Title: Plot the Bayesian efficient frontier (Bauder et al. 2021) and
> ###   the provided portfolios.
> ### Aliases: plot_frontier
> 
> ### ** Examples
> 
> p = 150
> n = 300
> gamma <- 10
> mu = seq(0.2,-0.2, length.out=p)
> Sigma = RandCovMtrx(p=p)
> 
> x <- t(MASS::mvrnorm(n=n , mu=mu, Sigma=Sigma))
> 
> EW_port <- rep(1/p, length=p)
> MV_shr_port <- new_MV_portfolio_weights_BDOPS21(x=x, gamma=gamma, b=EW_port, beta=0.05)$weights
> GMV_shr_port <- new_MV_portfolio_weights_BDOPS21(x=x, gamma=Inf, b=EW_port, beta=0.05)$weights
> MV_trad_port <- new_MV_portfolio_traditional(x=x, gamma=gamma)$weights
> GMV_trad_port <- new_MV_portfolio_traditional(x=x, gamma=Inf)$weights
> 
> weights.eff = cbind(EW_port, MV_shr_port, GMV_shr_port, MV_trad_port, GMV_trad_port)
> colnames(weights.eff) <- c("EW", "MV_shr", "GMV_shr", "MV_trad", "GMV_trad")
> 
> 
> Fplot <- plot_frontier(x, weights.eff)
         portfolio.return portfolio.sd    names
EW           -0.005758536   0.13770829       EW
MV_shr        0.186362029   0.12485627   MV_shr
GMV_shr       0.004309967   0.04744435  GMV_shr
MV_trad       0.731900466   0.27246473  MV_trad
GMV_trad      0.006505653   0.04120128 GMV_trad
Error in loadNamespace(x) : there is no package called ‘ggplot2’
Calls: plot_frontier ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'SpatialNP', 'sf', 'DT', 'swfscMisc', 'raster',
  'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'uwot', 'dplyr', 'tidyr', 'broom', 'ggridges', 'Boruta',
  'scales'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'lubridate', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'ggplot2', 'lubridate', 'readr', 'scales', 'shiny'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'yardstick', 'broom', 'ggrepel', 'dplyr', 'ggplot2', 'tidyr',
  'recipes', 'dials', 'parsnip', 'tune', 'workflows', 'modeltime'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'healthyR.data', 'scales', 'janitor',
  'timetk', 'plotly', 'rsample', 'kknn', 'uwot', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'janitor', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'timetk', 'ggplot2', 'dplyr', 'lubridate', 'stringr', 'cowplot',
  'scales', 'sqldf', 'plotly'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'healthyR.data', 'broom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'timetk', 'tidyr', 'dplyr', 'ggplot2', 'lubridate', 'plotly',
  'recipes', 'modeltime', 'cowplot', 'stringi', 'parsnip',
  'workflowsets'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'scales', 'rsample', 'healthyR.ai',
  'stringr', 'forecast', 'tidymodels', 'tune', 'dials', 'workflows'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
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  'TidyDensity', 'tidyAML', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'aws.s3', 'dplyr', 'fs', 'scales'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Title field: should not end in a period.
Package required but not available: ‘fastcluster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'plotly', 'viridis', 'ggplot2', 'dendextend', 'reshape2', 'scales',
  'htmlwidgets', 'egg'

Packages suggested but not available for checking:
  'covr', 'gplots', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'plyr', 'Rcpp', 'RcppRoll',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'ggpubr', 'rerddap', 'rmarkdown', 'testthat', 'tidync',
  'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sampleSelection', 'MomTrunc', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'roxygen2', 'testthat', 'dplyr', 'tidyr',
  'ggplot2'
'LazyData' is specified without a 'data' directory
Running examples in ‘heddlr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: make_template
> ### Title: Linearly combine template elements into templates
> ### Aliases: make_template
> 
> ### ** Examples
> 
> 
> # When passed vectors, make_template flattens each vector into a single
> # string and then combines its arguments from left to right
> spList <- data.frame(Species = c(unique(iris$Species), "test string"))
> make_template(
+   heddle(spList, "SPECIES CODE GWAR ", "GWAR" = Species),
+   heddle(spList, "SPECIES CODE GWAR ", "GWAR" = Species)
+ )
[1] "SPECIES CODE 1 SPECIES CODE 2 SPECIES CODE 3 SPECIES CODE test string SPECIES CODE 1 SPECIES CODE 2 SPECIES CODE 3 SPECIES CODE test string "
> 
> # When passed variables in a dataframe, make_template collapses each column
> # in turn, then combines the output strings from left to right
> spList <- data.frame(Species = c(unique(iris$Species), "test string"))
> spList$template <- heddle(spList, "SPECIES CODE GWAR ", "GWAR" = Species)
> make_template(spList, template)
[1] "SPECIES CODE 1 SPECIES CODE 2 SPECIES CODE 3 SPECIES CODE test string "
> make_template(spList, template, template)
[1] "SPECIES CODE 1 SPECIES CODE 2 SPECIES CODE 3 SPECIES CODE test string SPECIES CODE 1 SPECIES CODE 2 SPECIES CODE 3 SPECIES CODE test string "
> 
> # When passed nested columns, heddlr collapses each cell into a string,
> # then collapses each column into a string, and then combines the outputs
> # from left to right
> make_template(tidyr::nest(spList, nested = template), nested)
Error in loadNamespace(x) : there is no package called ‘tidyr’
Calls: make_template ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘testthat’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'memoise', 'mvnfast'

Packages suggested but not available for checking:
  'BCEA', 'flexsurv', 'optimx', 'readxl', 'rgho', 'rmarkdown',
  'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking: 'testthat', 'fst'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggforce'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'energy', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'xml2', 'rvest', 'plyr', 'taxize'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'lme4', 'fields', 'shiny', 'visNetwork', 'igraph', 'shinyWidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'dplyr', 'sf'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RBGL', 'precrec', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'terra', 'autothresholdr', 'dplyr', 'dismo', 'scales', 'sf', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'broom', 'car', 'rgl'

Packages suggested but not available for checking:
  'candisc', 'effects', 'reshape', 'gplots', 'reshape2', 'animation',
  'mvinfluence', 'rmarkdown', 'dplyr', 'tidyr', 'ggplot2', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'conflicted', 'covr', 'fs', 'plyr', 'readr', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'crul', 'flexpolyline', 'sf', 'stringr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'htmlwidgets', 'leafpop', 'lwgeom', 'mapview',
  'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) marker_h2.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:41-43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'cplm', 'DESeq2', 'lme4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘maxLik’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'ggplot2', 'DT', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'optimx', 'sf', 'fields'

Packages suggested but not available for checking:
  'autoimage', 'devtools', 'fda', 'igraph', 'testthat', 'future.apply'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flexsurv', 'ggplot2', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'kableExtra', 'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'terra', 'rio', 'scales', 'future', 'Rcpp', 'RcppArmadillo',
  'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'huge'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'BDgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'monomvn', 'lhs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘R2jags’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'dplyr', 'ggplot2', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'testthat', 'hedgehog'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking:
  'devtools', 'ggplot2', 'glmnet', 'plyr', 'reshape', 'reshape2',
  'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bupaR', 'processmapR', 'dplyr', 'tidyr', 'DiagrammeR', 'petrinetR',
  'scales', 'Rcpp', 'ggplot2', 'ggthemes', 'stringr'

Packages suggested but not available for checking:
  'svgPanZoom', 'DiagrammeRsvg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'hexSticker', 'magick', 'stringr'

Packages suggested but not available for checking:
  'httptest2', 'testthat', 'covr', 'rmarkdown', 'svglite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("bittermelon")
  
  Attaching package: 'bittermelon'
  
  The following object is masked from 'package:base':
  
      which
  
  > library("hexfont")
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Errors in running code in vignettes:
when running code in ‘hexfont.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘hexfont.Rmd’ using ‘UTF-8’... failed to complete the test
Packages required but not available: 'ggimage', 'ggplot2'

Package suggested but not available for checking: ‘magick’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘seqinr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FNN’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'urltools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dendextend’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) ohio.Rd:104: Escaped LaTeX specials: \&
checkRd: (-1) ohio.Rd:105: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘genscore’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'lubridate', 'readr', 'rvest', 'stringr'

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'usethis'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘surveillance’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Errors in running code in vignettes:
when running code in ‘HhP.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘HhP.Rmd’ using ‘UTF-8’... failed to complete the test
Packages required but not available:
  'latticeExtra', 'reshape2', 'shiny', 'Hmisc', 'Rmpfr'

Packages suggested but not available for checking:
  'car', 'Rcmdr', 'RcmdrPlugin.HH', 'microplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'mice', 'splines2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'EMD', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'devtools', 'rmarkdown', 'roxygen2', 'spelling', 'testthat'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘restatapi’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package vignette without corresponding tangle output:
  ‘HiCseg.Rnw’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggnewscale', 'ggplot2', 'ggrepel', 'shiny', 'tidyr',
  'viridis', 'vroom'

Packages suggested but not available for checking:
  'rmarkdown', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found export directives that require package ‘methods’:
  ‘exportClasses’ ‘exportMethods’
Remove all such namespace directives (if obsolete) or ensure that the
DESCRIPTION Depends or Imports field contains ‘methods’.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/HiDimDA.Rcheck/00install.out’ for details.
Packages required but not available:
  'ggdendro', 'ggplot2', 'Rcpp', 'scales', 'viridis', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Packages required but not available: 'ade4', 'adegenet', 'gaston'

Packages suggested but not available for checking:
  'ape', 'pegas', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) hierNet.Rd:28: Lost braces; missing escapes or markup?
    28 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |               ^
checkRd: (-1) hierNet.logistic.Rd:30: Lost braces; missing escapes or markup?
    30 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}  
       |               ^
checkRd: (-1) hierNet.logistic.Rd:63: Lost braces
    63 | \seealso{\link{predict.hierNet.logistic},link{hierNet.logistic.path}}
       |                                              ^
checkRd: (-1) hierNet.logistic.path.Rd:39: Lost braces; missing escapes or markup?
    39 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
checkRd: (-1) hierNet.path.Rd:38: Lost braces; missing escapes or markup?
    38 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
Packages required but not available: 'fastcluster', 'RiskPortfolios'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lbfgs', 'optimx'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmlwidgets', 'dplyr', 'stringr', 'broom', 'tidyr', 'htmltools',
  'igraph', 'lubridate', 'rjson'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'shiny', 'forecast', 'geojsonio', 'testthat',
  'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppRoll', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'rugarch', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'htmlwidgets'

Packages suggested but not available for checking:
  'lintr', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'shiny', 'testthat', 'dplyr', 'rmarkdown'
Running examples in ‘highlightHTML-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: table_id_inject
> ### Title: Table hash addition for markup
> ### Aliases: table_id_inject
> 
> ### ** Examples
> 
> library(dplyr)
Error in library(dplyr) : there is no package called ‘dplyr’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/highlight.Rcheck/00install.out’ for details.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'mlr3', 'mlr3learners', 'dplyr', 'missForest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nloptr', 'fitHeavyTail'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'R.rsp', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'R.rsp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fields', 'spatstat', 'ks', 'spatstat.random', 'spatstat.geom',
  'spatstat.explore', 'polyclip'

Package suggested but not available for checking: ‘INLA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gplots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘colorfulVennPlot’
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/hilbert.Rcheck/00install.out’ for details.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'dplyr', 'tidyr', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'haven', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'scales', 'ggpubr', 'ape', 'geiger', 'qgraph', 'FSA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FD', 'plyr', 'ade4', 'ape', 'geiger'

Packages suggested but not available for checking:
  'testthat', 'covr', 'betapart'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'rayshader', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cppRouting', 'dplyr', 'geosphere', 'ggplot2', 'lwgeom', 's2', 'sf',
  'tidyr'

Packages suggested but not available for checking:
  'airportr', 'cowplot', 'rmarkdown', 'scales', 'stringr', 'testthat',
  'units', 'viridis', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'HDMT', 'hdi', 'conquer', 'hommel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/hint.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘sourcetools’

Packages suggested but not available for checking: 'testthat', 'fs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'dplyr', 'readr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CorMID', 'InterpretMSSpectrum', 'openxlsx', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pryr', 'rms'

Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'GenSA', 'nloptr', 'phytools', 'igraph', 'diversitree',
  'paleotree', 'geiger', 'phangorn', 'TreeSim', 'corHMM'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'scales', 'reshape', 'plyr', 'car', 'gplots',
  'heplots', 'rmarkdown', 'effects', 'lubridate'
Running examples in ‘HistData-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Bowley
> ### Title: Bowley's data on values of British and Irish trade, 1855-1899
> ### Aliases: Bowley
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(Bowley)
> 
> # plot the data 
> with(Bowley,plot(Year, Value, type='b', lwd=2, 
+ 	ylab="Value of British and Irish Exports",
+ 	main="Bowley's example of the method of smoothing curves"))
> 
> # find moving averages
> # simpler version using stats::filter
> running <- function(x, width = 5){
+   as.vector(stats::filter(x, rep(1 / width, width), sides = 2))
+   }
> 
> mav3<-running(Bowley$Value, width=3)
> mav5<-running(Bowley$Value, width=5)
> mav9<-running(Bowley$Value, width=9)
> lines(Bowley$Year, mav3, col='blue', lty=2)
> lines(Bowley$Year, mav5, col='green3', lty=3)
> lines(Bowley$Year, mav9, col='brown', lty=4)
> 
> # add lowess smooth
> lines(lowess(Bowley), col='red', lwd=2)
> 
> # Initial version, using ggplot
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'FactoMineR', 'ggplot2', 'ggridges', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Hmisc', 'stringr'

Package which this enhances but not available for checking: ‘RProtoBuf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'clustermq', 'dplyr', 'ggplot2', 'posterior', 'Rcpp', 'RcppParallel',
  'rstan', 'rstantools', 'tidyr', 'trialr', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'posterior', 'rjags', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Packages required but not available: 'htmltools', 'reactR', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'shinytest2', 'bslib'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fastdigest', 'roprov'

Packages suggested but not available for checking: 'rmarkdown', 'trackr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘test.R’ [0s/0s]
Running the tests in ‘tests/test.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package which this enhances but not available for checking: ‘HadoopStreaming’
Packages required but not available: 'plyr', 'rgl'

Packages suggested but not available for checking:
  'bipartite', 'rmarkdown', 'tint'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggpubr', 'dplyr', 'reshape2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fst’

Packages suggested but not available for checking: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinydashboard', 'shinyWidgets', 'shinydashboardPlus',
  'DT', 'highlight'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'devtools', 'tidyverse', 'dplyr', 'reshape2', 'stringr', 'tidyr',
  'readr', 'janitor'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'usethis', 'urltools'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'reshape2', 'dplyr', 'stringr', 'janitor', 'Rcpp',
  'ggrepel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'mlmRev', 'lme4', 'testthat', 'rmarkdown', 'car', 'qqplotr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppDist', 'tidyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'bayesplot', 'rstantools', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘bayesplot’

Packages suggested but not available for checking:
  'rmarkdown', 'lme4', 'ggplot2', 'mlmRev', 'testthat', 'MCMCpack'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rvest', 'dplyr', 'janitor', 'lubridate', 'readr', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Packages required but not available:
  'stringr', 'tidyr', 'dplyr', 'ggplot2', 'lhs', 'viridis', 'GGally',
  'isoband', 'ggbeeswarm'

Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'testthat', 'covr', 'progressr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'htmlTable', 'viridis', 'htmltools', 'rmarkdown'

Packages suggested but not available for checking:
  'qreport', 'rms', 'mice', 'tables', 'plotly', 'plyr', 'pcaPP',
  'digest', 'kableExtra', 'rio', 'latticeExtra', 'gt', 'sparkline',
  'htmlwidgets', 'qs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘copula’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) nafracCalc.Rd:45: Lost braces
    45 |   as if code{y} were not of class \code{"multipleHmmDataSets"}.
       |             ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'MCMCpack', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) hmmm.model.Rd:45: Lost braces; missing escapes or markup?
    45 | with categories k_1, k_2, the joint frequencies y = {y_ij}, where i=1,...,k_1, j=1,...,k_2, 
       |                                                     ^
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) disc42.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) discrimination.Rd:31: Escaped LaTeX specials: \&
Packages required but not available:
  'TMB', 'ggplot2', 'stringr', 'optimx', 'tmbstan', 'RcppEigen'

Packages suggested but not available for checking:
  'rstan', 'testthat', 'moveHMM', 'scico', 'unmarked'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'gplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'HMP'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ape', 'BayesLogit', 'fields', 'FNN', 'ggplot2', 'MCMCpack', 'pROC'

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'lubridate', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘GA’

Packages suggested but not available for checking:
  'testthat', 'ecr', 'smoof'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘pROC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Auto-generated content requiring editing in Rd file 'HMVD-package.Rd':
  \details: ‘...o use the package, including the most important functions ~~’
Packages required but not available: 'NMF', 'oro.nifti'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'lme4', 'glmmADMB', 'latticeExtra'
Running examples in ‘hnp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cbb
> ### Title: Coffee berry borer trapping data
> ### Aliases: cbb
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(cbb)
> # exploratory plot
> require(latticeExtra)
Loading required package: latticeExtra
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘latticeExtra’
> trellis.par.set(strip.background=list(col="lightgrey"))
Error in trellis.par.set(strip.background = list(col = "lightgrey")) : 
  could not find function "trellis.par.set"
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'bamsignals', 'rmarkdown', 'Rsamtools', 'seqinr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'readr', 'dplyr', 'tidyr', 'patchwork',
  'scales', 'rvest', 'treemapify'

Packages suggested but not available for checking: 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'readr', 'RecordLinkage'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Argument items with no description in Rd file 'bid2.Rd':
  ‘numattable1’ ‘playerseats1’ ‘blinds1’ ‘dealer1’ ‘b3’ ‘b4’ ‘round1’
  ‘ntable1’ ‘decision1’
Argument items with no description in Rd file 'calcwin1.Rd':
  ‘numattable1’ ‘playerseats1’ ‘b3’ ‘b7’
Argument items with no description in Rd file 'mycount1.Rd':
  ‘x’
Argument items with no description in Rd file 'mygraphics1.Rd':
  ‘numattable1’ ‘playerseats1’ ‘chips1’ ‘blinds1’ ‘dealer1’ ‘b3’ ‘b4’
  ‘b5’ ‘b6’ ‘b7’ ‘chips2’ ‘ntable1’ ‘myfast1’ ‘chipstart1’ ‘name1’
  ‘lowercut1’
Argument items with no description in Rd file 'nothing1.Rd':
  ‘x’
Argument items with no description in Rd file 'onepair1.Rd':
  ‘x’
Argument items with no description in Rd file 'straight1.Rd':
  ‘x’
Argument items with no description in Rd file 'straightdraw1.Rd':
  ‘x’
Argument items with no description in Rd file 'strflsh1.Rd':
  ‘x’ ‘y’
Argument items with no description in Rd file 'trip1.Rd':
  ‘x’
Argument items with no description in Rd file 'twopair1.Rd':
  ‘x’
Argument items with no description in Rd file 'writebets1.Rd':
  ‘b9’ ‘y1’ ‘numattable1’ ‘b3’ ‘playerseats1’ ‘chips1’ ‘chips2’ ‘over1’
  ‘myfast1’ ‘name1’
Package required but not available: ‘SuppDists’

Packages suggested but not available for checking:
  'rmarkdown', 'bookdown', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MplusAutomation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'mice', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bs4Dash', 'dplyr', 'DT', 'ggplot2', 'golem', 'igraph', 'openxlsx',
  'readxl', 'shiny', 'shinyalert', 'shinybusy', 'shinyjs',
  'shinyvalidate', 'shinyWidgets', 'stringr', 'tippy', 'visNetwork',
  'mixOmics', 'BiocParallel'

Packages suggested but not available for checking: 'bookdown', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ape’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘huxtable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gmp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'furrr', 'future', 'janitor', 'lubridate', 'progressr',
  'Rcpp', 'RcppParallel', 'rvest', 'stringr', 'tidyr', 'usethis'

Packages suggested but not available for checking:
  'ggplot2', 'ggrepel', 'qs', 'rmarkdown', 'RSQLite', 'stringi',
  'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘endtoend’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'survey', 'Rcpp', 'questionr', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'usethis', 'rmarkdown', 'qpdf', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RANN’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘pgdraw’
'LazyData' is specified without a 'data' directory
Running examples in ‘horseshoenlm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: logiths
> ### Title: Horseshoe shrinkage prior in Bayesian Logistic regression
> ### Aliases: logiths
> 
> ### ** Examples
> 
> 
> burnin <- 100
> nmc    <- 500
> thin <- 1
> 
>  
> p <- 100  # number of predictors
> ntrain <- 250  # training size
> ntest  <- 100   # test size
> n <- ntest + ntrain  # sample size
> q <- 10   # number of true predictos
> 
> beta.t <- c(sample(x = c(1, -1), size = q, replace = TRUE), rep(0, p - q))  
> x <- mvtnorm::rmvnorm(n, mean = rep(0, p), sigma = diag(p))    
> 
> zmean <- x %*% beta.t
> z <- rbinom(n, size = 1, prob = boot::inv.logit(zmean))
> X <- scale(as.matrix(x))  # standarization
> 
> 
> # Training set
> ztrain <- z[1:ntrain]
> Xtrain  <- X[1:ntrain, ]
> 
> # Test set
> ztest <- z[(ntrain + 1):n]
> Xtest  <- X[(ntrain + 1):n, ]
> 
> posterior.fit <- logiths(z = ztrain, X = Xtrain, method.tau = "halfCauchy",
+                          burn = burnin, nmc = nmc, thin = 1,
+                          Xtest = Xtest)
Markov chain monte carlo is running
Error in loadNamespace(x) : there is no package called ‘pgdraw’
Calls: logiths ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'Hmisc', 'ggplot2', 'rmarkdown'
Running examples in ‘horseshoe-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: HS.normal.means
> ### Title: The horseshoe prior for the sparse normal means problem
> ### Aliases: HS.normal.means
> 
> ### ** Examples
> 
> #Empirical Bayes example with 20 signals, rest is noise
> #Posterior mean for the signals is plotted
> #And variable selection is performed using the credible intervals
> #And the credible intervals are plotted
> truth <- c(rep(0, 80), rep(8, 20))
> data <-  truth + rnorm(100, 1)
> tau.hat <- HS.MMLE(data, Sigma2 = 1)
> res.HS1 <- HS.normal.means(data, method.tau = "fixed", tau = tau.hat,
+ method.sigma = "fixed", Sigma2 = 1)
[1] 1000
[1] 2000
[1] 3000
[1] 4000
[1] 5000
[1] 6000
> #Plot the posterior mean against the data (signals in blue)
> plot(data, res.HS1$BetaHat, col = c(rep("black", 80), rep("blue", 20)))
> #Find the selected betas (ideally, the last 20 are equal to 1)
> HS.var.select(res.HS1, data, method = "intervals")
  [1] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
 [38] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0
 [75] 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
> #Plot the credible intervals
> library(Hmisc)
Error in library(Hmisc) : there is no package called ‘Hmisc’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'sf', 'tidyverse', 'units', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'lubridate', 'ggplot2', 'ggraph'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'shiny', 'shinyWidgets', 'shinydashboard',
  'DT', 'shinyalert', 'shinyjs', 'vdiffr', 'pander', 'golem',
  'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mice', 'tidyr'

Packages suggested but not available for checking: 'miceadds', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'FactoMineR', 'ggforce', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'spelling', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmlwidgets'

Packages suggested but not available for checking:
  'rmarkdown', 'shinytest2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'jomo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'rmarkdown', 'shiny', 'colourpicker'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggplot2', 'sampleSelection', 'GA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'dplyr', 'lubridate', 'ggplot2', 'imputeTS', 'forecast', 'plyr',
  'ranger', 'pdp'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'fields', 'ranger'
checkRd: (-1) HPLB.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:38: Lost braces in \itemize; meant \describe ?
'LazyData' is specified without a 'data' directory
Running examples in ‘HPLB-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: HPLB
> ### Title: High Probability Lower Bounds (HPLB) for the Total Variation
> ###   Distance (TV) Based on Finite Samples
> ### Aliases: HPLB
> 
> ### ** Examples
> 
> ## libs
> library(HPLB)
> library(ranger)
Error in library(ranger) : there is no package called ‘ranger’
Execution halted
Rd files without \alias:
  ‘hpoPlot-package.Rd’
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'scales', 'rmarkdown', 'htmltools', 'gdtools'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'hunspell', 'stringi', 'vdiffr', 'svglite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'plyr', 'ggplot2', 'reshape2', 'doBy', 'Rcpp', 'pseudorank'

Packages suggested but not available for checking:
  'RGtk2', 'cairoDevice', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'rhandsontable'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'CompQuadForm', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘fields’
Packages suggested but not available for checking:
  'ape', 'lme4', 'wordcloud'
Packages suggested but not available for checking:
  'ape', 'lme4', 'mice', 'sf', 'wordcloud'
Note: skipping ‘Ch_analysing_longitudinal_dataI.Rnw’ due to unavailable dependencies:
  'lme4'
Note: skipping ‘Ch_analysing_longitudinal_dataII.Rnw’ due to unavailable dependencies:
  'lme4'
Note: skipping ‘Ch_analysis_of_variance.Rnw’ due to unavailable dependencies:
  'wordcloud'
Note: skipping ‘Ch_gam.Rnw’ due to unavailable dependencies: 'wordcloud'
Note: skipping ‘Ch_graphical_display.Rnw’ due to unavailable dependencies:
  'sf'
Note: skipping ‘Ch_missing_values.Rnw’ due to unavailable dependencies:
  'mice'
Note: skipping ‘Ch_multidimensional_scaling.Rnw’ due to unavailable dependencies:
  'ape', 'wordcloud'
Note: skipping ‘Ch_multiple_linear_regression.Rnw’ due to unavailable dependencies:
  'wordcloud'
Note: skipping ‘Ch_simultaneous_inference.Rnw’ due to unavailable dependencies:
  'lme4'
Packages suggested but not available for checking: 'ape', 'lme4'
Note: skipping ‘Ch_analysing_longitudinal_dataI.Rnw’ due to unavailable dependencies:
  'lme4'
Note: skipping ‘Ch_multidimensional_scaling.Rnw’ due to unavailable dependencies:
  'ape'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'raster', 'rmarkdown', 'bookdown'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sphet', 'spdep'

Package suggested but not available for checking: ‘splm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘npregfast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggpubr', 'tidyr', 'reshape2', 'ggplot2', 'partitions'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'hsphase', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'AlphaSimR', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'pROC', 'Rcpp', 'rstan', 'rstantools', 'RcppEigen',
  'RcppParallel', 'StanHeaders'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'Rcpp', 'grf', 'data.tree', 'Matching', 'dplyr', 'shiny', 'stringr'

Packages suggested but not available for checking: 'optmatch', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'bayesplot', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyAce', 'shinythemes', 'shinyjqui'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cld3', 'dplyr', 'lubridate', 'ranger', 'rvest', 'stringr', 'tidyr',
  'urltools', 'xml2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'Hmisc', 'rmarkdown', 'lubridate', 'tidyr',
  'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'fastmap'

Packages suggested but not available for checking:
  'ragg', 'shiny', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'rmarkdown'

Package suggested but not available for checking: ‘testthat’

Package which this enhances but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fastglm', 'caret', 'glmnet', 'tune', 'recipes'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘edgeR’

Package suggested but not available for checking: ‘HTSFilter’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'readr', 'lubridate', 'stringr', 'fs', 'Rcpp',
  'readxl', 'RSQLite', 'shiny', 'shinyFiles', 'waiter'

Packages suggested but not available for checking:
  'rmarkdown', 'openair', 'editData', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'ape', 'stringr', 'plyr', 'dplyr', 'tidyr', 'ggplot2',
  'DESeq2', 'phyloseq'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'survey', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'R.rsp', 'gplots', 'scales', 'EnvStats', 'stringr',
  'reshape', 'viridis', 'cowplot', 'ggrepel', 'dplyr', 'readxl', 'ks'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Packages suggested but not available for checking:
  'httptest', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘pryr’

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) simplePostToHost.Rd:14: Escaped LaTeX specials: \&
Packages required but not available: 'digest', 'testthat'

Packages suggested but not available for checking:
  'pkgload', 'rmarkdown', 'spelling', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'testthat', 'digest'

Packages suggested but not available for checking:
  'pkgload', 'rmarkdown', 'spelling', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'later', 'promises', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'websocket'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'httpuv', 'rmarkdown', 'testthat', 'xml2'
Running examples in ‘httr2-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: iterate_with_offset
> ### Title: Iteration helpers
> ### Aliases: iterate_with_offset iterate_with_cursor iterate_with_link_url
> 
> ### ** Examples
> 
> req <- request(example_url()) |>
+   req_url_path("/iris") |>
+   req_throttle(10) |>
+   req_url_query(limit = 50)
Error in loadNamespace(x) : there is no package called ‘callr’
Calls: req_url_query ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'ggraph', 'igraph', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'httpuv', 'readr', 'rmarkdown', 'testthat', 'xml2'
Running examples in ‘httr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: VERB
> ### Title: VERB a url.
> ### Aliases: VERB
> 
> ### ** Examples
> 
> r <- VERB(
+   "PROPFIND", "http://svn.r-project.org/R/tags/",
+   add_headers(depth = 1), verbose()
+ )
-> PROPFIND /R/tags/ HTTP/1.1
-> Host: svn.r-project.org
-> User-Agent: libcurl/8.5.0 r-curl/5.2.0 httr/1.4.7
-> Accept-Encoding: deflate, gzip, br, zstd
-> Accept: application/json, text/xml, application/xml, */*
-> depth: 1
-> Content-Length: 0
-> 
<- HTTP/1.1 207 Multi-Status
<- Date: Mon, 05 Feb 2024 12:14:15 GMT
<- Server: Apache/2.4.37 (CentOS Stream) OpenSSL/1.1.1k SVN/1.10.2
<- Transfer-Encoding: chunked
<- Content-Type: text/xml; charset="utf-8"
<- 
> stop_for_status(r)
> content(r)
Error: Please install xml2 package
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'urltools'

Packages suggested but not available for checking:
  'ggplot2', 'leafpop', 'lubridate', 'mapview', 'rmarkdown', 'sf',
  'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
'LazyData' is specified without a 'data' directory
Packages required but not available: 'igraph', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'magick', 'cowplot', 'ggplot2', 'dplyr', 'tidyr', 'pdftools'

Packages suggested but not available for checking:
  'rmarkdown', 'bookdown', 'gsheet', 'inti'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘dplyr’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'digest'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'pdftools', 'wordcloud2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'rstan', 'cowplot', 'Hmisc', 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘terra’

Packages suggested but not available for checking:
  'qpdf', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggmap', 'ggplot2', 'lubridate', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'hurricaneexposuredata', 'pander', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'TeXCheckR', 'covr'
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'dplyr', 'digest', 'fst', 'Hmisc', 'rmarkdown',
  'geosphere', 'ggplot2', 'readr', 'survey', 'tidyr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'htmltools', 'memoise', 'stringi', 'stringr', 'xml2'

Packages suggested but not available for checking:
  'AER', 'bookdown', 'broom', 'broom.mixed', 'covr', 'devtools',
  'dplyr', 'flextable', 'ftExtra', 'ggplot2', 'lme4', 'officer',
  'openxlsx', 'quarto', 'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Hmisc', 'dplyr', 'polyclip', 'ggplot2', 'tidyr', 'scales',
  'reshape2', 'plyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'kableExtra', 'plotly', 'DT', 'htmlwidgets',
  'installr', 'skimr', 'devtools', 'tidyverse', 'DataExplorer',
  'htmltools', 'gganimate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'bridgesampling', 'doFuture', 'doRNG', 'future', 'Rcpp',
  'RcppParallel', 'rstan', 'rstantools', 'updog', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatsoc’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmlwidgets', 'wordcloud2', 'shiny', 'colourpicker'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'terra', 'dplyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rgl', 'compositions', 'PERMANOVA', 'ks', 'ape', 'geometry',
  'StereoMorph', 'phyloseq'

Package suggested but not available for checking: ‘microViz’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'doRNG', 'ggplot2', 'reshape2', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pheatmap’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'nnfor', 'WaveletArima'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'stringr', 'devtools', 'pkgdown',
  'roxygen2', 'revealjs', 'shiny', 'shiny.i18n', 'shinyTime',
  'lubridate', 'usethis'
Running examples in ‘hyd1d-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getPegelonlineW
> ### Title: Get W from pegelonline.wsv.de for the specified gauging station
> ###   and time
> ### Aliases: getPegelonlineW
> 
> ### ** Examples
> 
> ## Don't show: 
> if (hyd1d:::.pegelonline_status()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+    getPegelonlineW(gauging_station = "DESSAU", time = Sys.time() - 3600)
+    getPegelonlineW(gauging_station = "DESSAU", time = Sys.Date() - 1)
+ ## Don't show: 
+ }) # examplesIf
> getPegelonlineW(gauging_station = "DESSAU", time = Sys.time() - 3600)
Error in httr2::resp_body_json(resp, simplifyVector = TRUE) : 
  The package "jsonlite" is required.
Calls: <Anonymous> ... eval -> getPegelonlineW -> <Anonymous> -> check_installed
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sf', 'terra', 'raster'

Packages suggested but not available for checking:
  'rmarkdown', 'devtools', 'pkgdown', 'roxygen2', 'testthat', 'shiny',
  'shinyjs', 'shiny.i18n', 'leaflet', 'leaflet.extras', 'leaflet.esri',
  'pangaear', 'rgrass', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'igraph', 'RSpectra'
Packages required but not available: 'ggplot2', 'reshape2', 'units'

Packages suggested but not available for checking:
  'docxtools', 'kableExtra', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘hydroTSM’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'sf', 'units', 'tidyr', 'RANN', 'fastmap'

Packages suggested but not available for checking:
  'testthat', 'nhdplusTools', 'future', 'lwgeom', 'future.apply',
  'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid package aliases in Rd file 'HydroMe-package.Rd':
  ‘HydroMe2-package’
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'dplyr', 'ggpmisc', 'ggplot2', 'lubridate', 'reshape2', 'scales'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'dplyr', 'plyr'
Packages required but not available:
  'ggplot2', 'plotly', 'lubridate', 'readxl', 'reshape2', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plotly', 'lubridate', 'readxl', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'classInt'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'sf', 'plyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'EnvStats', 'lmomco', 'lubridate', 'plyr'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cubature', 'Rcpp', 'partitions', 'disordR', 'calibrator'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'bookdown', 'rticles'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'plotly', 'stringr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'flowCore', 'sf'
Packages required but not available: 'EigenR', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'Bessel', 'jack', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'igraph', 'RSpectra'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'matlib', 'ggplot2', 'rgl'

Packages suggested but not available for checking: 'rmarkdown', 'webshot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'xml2', 'testthat', 'latticeExtra', 'dplyr'

Packages suggested but not available for checking:
  'rgl', 'Rcpp', 'fastcluster', 'digest', 'reshape', 'devtools',
  'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'raster', 'geometry', 'ks', 'fastcluster', 'e1071', 'terra',
  'ggplot2', 'dplyr', 'caret', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rgl', 'magick', 'alphahull', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggpubr', 'ggrepel', 'lubridate', 'patchwork',
  'scales', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'beepr', 'DT', 'htmlwidgets', 'leaflet',
  'leaflet.extras', 'mapview', 'plotly', 'sf', 'shiny', 'shinyalert',
  'shinyFiles', 'shinyWidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ranger’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'shiny', 'testthat', 'mockery', 'rmarkdown', 'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'PolynomF', 'dplyr', 'ggplot2', 'terra', 'stars', 'sf', 'sjPlot'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rglpk’

Packages suggested but not available for checking:
  'rmarkdown', 'qpdf', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'htmltools', 'rmarkdown', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'lintr', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ciTools', 'dplyr', 'tidyr', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FrF2', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinydashboard'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'dplR'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rmpfr', 'mvnfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'JuliaCall', 'stringr', 'ggplot2', 'cowplot', 'rjson'

Packages suggested but not available for checking:
  'testthat', 'covr', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown'
Packages required but not available: 'RSpectra', 'HDMFA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'pander', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'Hmisc', 'vcdExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'dplyr', 'reshape2', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'bartMachine', 'glmnet'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dslabs', 'ggplot2', 'scales', 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'tidyverse', 'rmarkdown', 'kableExtra', 'caret', 'reshape2',
  'lubridate', 'patchwork', 'ggrepel', 'GGally', 'ggfortify',
  'cowplot', 'DT', 'gutenbergr', 'tidytext', 'rvest', 'Lahman',
  'pdftools', 'usethis', 'vdiffr', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'covr', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘paramlink’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ggplot2', 'SparkR'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'readr', 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'RcppArmadillo', 'rmarkdown', 'bookdown', 'ggfortify', 'magick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'DALEX', 'rmarkdown', 'e1071', 'ranger', 'testthat', 'r2d3', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) setServerLogLevel.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) betaS1lr.Rd:28: Lost braces; missing escapes or markup?
    28 |  \item{Rm1U}{matrix R^{-1}U (see reference).}
       |                       ^
checkRd: (-1) lrsmoother.Rd:32: Lost braces; missing escapes or markup?
    32 |   R^{-1}U (see reference) and \link{smoothCon} for the definition of smoothobject}
       |     ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘V8’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'bigmemory', 'Hmisc', 'DirichletReg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'BSgenome', 'dplyr', 'stringi'

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.1000genomes.hs37d5',
  'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'nloptr', 'cubature', 'RcppEigen'

Packages suggested but not available for checking: 'rgl', 'R.rsp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'caret', 'dplyr', 'ggplot2', 'plotROC', 'plyr', 'raster', 'reshape2',
  'leaflet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rstan', 'ggplot2', 'igraph', 'reshape2', 'mc2d'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'Rglpk'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'glmnet', 'dplyr', 'latex2exp', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'icenReg', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'lme4', 'RcppArmadillo'

Packages suggested but not available for checking:
  'RLRsim', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘lme4’
'LazyData' is specified without a 'data' directory
Running examples in ‘ICCbin-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: iccbin
> ### Title: Estimates Intracluster Correlation coefficients (ICC) and it's
> ###   confidence intervals (CI)
> ### Aliases: iccbin
> 
> ### ** Examples
> 
> bccdata <- rcbin(prop = .4, prvar = .2, noc = 30, csize = 20, csvar = .2, rho = .2)
> iccbin(cid = cid, y = y, data = bccdata)
Warning in iccbin(cid = cid, y = y, data = bccdata) :
  One or Both of 'Zou and Donner's Modified Wald' Confidence Limits Fell Outside of [0, 1]
Error: Package 'lme4' is needed for methods 'lin' and 'sim'. Please install it.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'glmmTMB', 'ggplot2', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'icenReg', 'ipred'

Package suggested but not available for checking: ‘LTRCtrees’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'trajectories', 'spacetime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'icd'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'rcmdcheck'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'graphite', 'metap', 'org.Hs.eg.db'

Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) ICEscale.Rd:53: Escaped LaTeX specials: \^
checkRd: (-1) dpwdg.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) dpwdg.Rd:15: Escaped LaTeX specials: \$
Packages required but not available:
  'ggplot2', 'plotly', 'Rtsne', 'ggrepel', 'ggpubr', 'shiny',
  'pheatmap', 'ape', 'ggdendro', 'plyr', 'reshape', 'Hmisc',
  'htmlwidgets', 'uwot', 'igraph', 'Rcpp', 'RANN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘smoothSurv’

Packages suggested but not available for checking:
  'mixAK', 'bayesSurv', 'icenReg', 'frailtypack', 'cubature',
  'runjags', 'dynsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinythemes', 'DT', 'tidyverse', 'readxl', 'ggplot2',
  'ggrepel', 'digest', 'shinyhelper'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Bpa.Rd:39-40: Lost braces
    39 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) Fpa.Rd:42-43: Lost braces
    42 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) icesRound.Rd:64-65: Lost braces
    64 | \doi{10.17895/ices.pub.3038}{\emph{ICES Advice Technical
       |                             ^
checkRd: (-1) mohn.Rd:71-72: Lost braces
    71 | \doi{10.17895/ices.pub.5997}{\emph{ICES Scientific Reports
       |                             ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'sf', 'lwgeom', 'units', 'leaflet', 'leafgl', 'leaflet.extras',
  'leafsync', 'miniUI', 'shiny', 'rnaturalearth', 'lubridate', 'rvest'

Packages suggested but not available for checking:
  'rmarkdown', 'DT', 'mapview', 'reshape2', 'plotly', 'CopernicusDEM',
  'terra', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘icesVocab’
Package required but not available: ‘sqldf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'xml2', 'icesVocab'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Packages required but not available: 'roxygen2', 'data.tree'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘icesVocab’

Package suggested but not available for checking: ‘sf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fastcluster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'RcppSimdJson', 'shiny'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘kappalab’

Package suggested but not available for checking: ‘relaimpo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rugarch', 'car', 'coefplot', 'forecast', 'lubridate', 'openair',
  'papeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'igraph', 'sf'

Packages suggested but not available for checking:
  'rmarkdown', 'terra', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rvest’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'gmp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Running examples in ‘icrf-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: survplot
> ### Title: 'Plotting individual survival curves'
> ### Aliases: survplot
> 
> ### ** Examples
> 
> # rats data example.
> # Note that this is a toy example. Use a larger ntree and nfold in practice.
> data(rat2)
> ## Don't show: 
>  set.seed(1)
>  rats.icrf <-
+    icrf(~ dose.lvl + weight + male + cage.no, data = rat2,
+         data.type = "currentstatus", currentstatus.label = c("survtime", "tumor"),
+         returnBest = TRUE, ntree=2, nfold=2)

Forest loop 1 out of 2 folds
Tree 1 2 
   IMSE1 (OOB, non-OOB) = (0.131, 0.085), IMSE2 = (0.252, 0.193)
Forest loop 2 out of 2 folds
Tree 1 2 
   IMSE1 (OOB, non-OOB) = (0.134, 0.079), IMSE2 = (0.268, 0.193)
>  survplot(rats.icrf, c(1,3,5))
Error in loadNamespace(x) : there is no package called ‘ggplot2’
Calls: survplot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'icensmis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ICS', 'ggplot2', 'fpc', 'GGally', 'heplots', 'RcppRoll', 'rrcov',
  'scales', 'tclust', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CompQuadForm', 'dplyr', 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ICS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ICS’

Packages suggested but not available for checking: 'ICSClust', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

Packages suggested but not available for checking:
  'ICSNP', 'testthat', 'ICSOutlier'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ICS', 'ICSOutlier', 'shiny', 'ICSNP', 'rrcov', 'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) data.Rd:7: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:9: Lost braces in \itemize; meant \describe ?
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > ## load dependencies
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'rgenoud', 'minqa'
Running examples in ‘icsw-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compliance.score
> ### Title: Estimate compliance scores using covariates.
> ### Aliases: compliance.score
> 
> ### ** Examples
> 
> 
> # Load example dataset, see help(FoxDebate) for details
> data(FoxDebate)
> 
> # Matrix of covariates
> covmat <- with(FoxDebate, cbind(partyid, pnintst, watchnat, educad, readnews, 
+                                 gender, income, white))
> 
> # Estimate compliance scores with covariates, assuming (default) 
> #   case of two-sided non-compliance
> cscoreout <- with(FoxDebate, compliance.score(D = watchpro, Z = conditn,
+                                               W = covmat))
Error in compliance.score(D = watchpro, Z = conditn, W = covmat) : 
  rgenoud package required to use genoud = TRUE option.
Calls: with -> with.default -> eval -> eval -> compliance.score
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'JADE', 'ICS', 'ggplot2', 'Rcpp', 'ICSNP', 'survey', 'GGally',
  'RcppRoll', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'fICA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'terra'

Packages suggested but not available for checking:
  'ggnewscale', 'ggplot2', 'metR', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'FD', 'picante', 'spatstat', 'ape', 'spatstat.geom',
  'spatstat.explore', 'spatstat.random'

Package suggested but not available for checking: ‘ecespa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'sf'

Packages suggested but not available for checking: 'tidyr', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'nrba', 'dplyr', 'rmarkdown', 'shiny', 'flexdashboard', 'shinyjs',
  'htmlwidgets', 'DT', 'survey', 'srvyr', 'haven', 'readr', 'openxlsx',
  'miniUI'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'ggplot2', 'shinyTime'

Packages suggested but not available for checking:
  'shinytest', 'shinytest2', 'testthat', 'rmarkdown', 'spelling',
  'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'tidyr', 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readxl', 'stringi', 'ggimage', 'pdftools', 'ggpubr', 'ggplot2',
  'ggtext', 'rmarkdown', 'shiny', 'openxlsx'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'dplyr', 'Rcpp', 'scales', 'dfidx', 'RcppArmadillo'

Packages suggested but not available for checking:
  'RSGHB', 'bayesm', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'RcppParallel', 'rstantools', 'sqldf', 'mice',
  'StanHeaders', 'RcppEigen'

Packages suggested but not available for checking:
  'shiny', 'rmarkdown', 'pander', 'DT', 'shinythemes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rggobi’
Packages required but not available:
  'ggplot2', 'spacetime', 'dplyr', 'tidyr', 'FRK', 'sparseinv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FNN’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘RcppRoll’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'visNetwork', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'dplyr', 'tidyr', 'scales'

Packages suggested but not available for checking:
  'ggplot2', 'ggpubr', 'ggtree', 'phytools', 'treeio', 'rmdformats',
  'kableExtra', 'rvcheck', 'badger', 'rmarkdown', 'shiny',
  'shinydashboard', 'rhandsontable', 'rclipboard', 'shinyjs'

VignetteBuilder packages required for checking but not installed:
  'rmdformats', 'kableExtra', 'rmarkdown', 'rvcheck', 'badger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'infotheo', 'lme4'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'egg', 'ggplot2', 'igraph', 'pheatmap', 'survminer'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'viridis', 'future', 'furrr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'pkgnet', 'DT', 'vdiffr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'animation', 'ggrepel'

Package suggested but not available for checking: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'glmnet', 'igraph', 'scales', 'patchwork'

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Objects in \usage without \alias in Rd file 'pkg-internal.Rd':
  ‘iplotMain’ ‘segments.circle’ ‘griddat’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
S3 methods shown with full name in Rd file 'pkg-internal.Rd':
  ‘plot.page’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Found the following significant warnings:

  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'GD', 'ggplot2', 'reshape2', 'kableExtra'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'IDSL.MXP', 'IDSL.IPA', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘readxl’
Packages required but not available: 'IDSL.MXP', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'IDSL.MXP', 'IDSL.IPA', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'IDSL.IPA', 'readxl'

Package suggested but not available for checking: ‘GA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'IDSL.IPA', 'IDSL.UFA', 'readxl', 'RcppAlgos'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'spatstat.geom', 'ggplot2', 'stringi', 'rmarkdown', 'sf', 'rvest',
  'spelling', 'lubridate', 'gotop'
Packages required but not available:
  'readxl', 'openxlsx', 'gWidgets2', 'stringi', 'lubridate'

Packages suggested but not available for checking: 'rando', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'iemisc', 'rivr', 'rvest', 'ggplot2', 'stringi', 'qdap', 'lubridate',
  'snakecase', 'rmarkdown', 'sfheaders', 'sf', 'dplyr', 'spelling',
  'pander', 'units', 'anytime'
Packages required but not available:
  'units', 'stringi', 'rivr', 'sf', 'ggplot2', 'ggpubr', 'sjmisc',
  'lubridate', 'anytime', 'qdapRegex', 'geosphere', 'matlab2r'

Packages suggested but not available for checking:
  'fractional', 'fracture', 'rmarkdown', 'spelling', 'sampler',
  'rando', 'geometry', 'linguisticsdown', 'hydraulics', 'ie2misc',
  'pander', 'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'tm', 'rmarkdown'
Packages required but not available: 'ggplot2', 'dplyr', 'lubridate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'reshape2', 'rpf', 'OpenMx'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rmarkdown', 'isotree'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'xml2', 'latticeExtra', 'DT', 'visNetwork'

Packages suggested but not available for checking:
  'IFCdata', 'shiny', 'reticulate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

Packages suggested but not available for checking:
  'forecast', 'keras', 'kernlab', 'lubridate', 'tensorflow', 'timetk'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘readxl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haplo.stats’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'CompQuadForm', 'MBESS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'stringr', 'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caTools', 'dplyr', 'DT', 'ggplot2', 'ggpubr', 'lubridate',
  'patchwork', 'pheatmap', 'scales', 'shiny', 'tidyr', 'plotly'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'testthat'
Running examples in ‘igoR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: igo_dyadic
> ### Title: Extract the Joint Membership of a pair of Countries across IGOs.
> ### Aliases: igo_dyadic
> 
> ### ** Examples
> 
> usa_esp <- igo_dyadic("USA", "Spain")
> nrow(usa_esp)
[1] 199
> ncol(usa_esp)
[1] 544
> 
> dplyr::tibble(usa_esp)
Error in loadNamespace(x) : there is no package called ‘dplyr’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'shiny', 'shinydashboard', 'shinyWidgets', 'shinyFiles', 'htmltools',
  'rhandsontable', 'sortable', 'stringr', 'lubridate', 'dplyr',
  'tidyr', 'fuzzyjoin', 'rio', 'arrow', 'fst', 'feather', 'haven',
  'readxl', 'readODS', 'Hmisc', 'skimr', 'tables', 'ggformula', 'mapsf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘igraph’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'shiny', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'Rcpp'

Packages suggested but not available for checking:
  'spelling', 'dplyr', 'testthat', 'rmarkdown', 'ggplot2', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ape', 'decor', 'digest', 'rgl', 'rmarkdown', 'scales', 'testthat',
  'vdiffr'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/igraph.Rcheck/00install.out’ for details.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'metR', 'ggplot2', 'rnaturalearth', 'rmarkdown', 'covr', 'testthat'
Running ‘testthat.r’ [0s/0s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
  > # Run all unit tests
  > 
  > # This is a wrapper around all the tests specified
  > # in the tests/testthat directory. These tests are visible
  > # to users and serve as small examples as well.
  > testthat::test_check("igrf")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Package required but not available: ‘e1071’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'factoextra', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggdendro', 'fastcluster', 'htmlwidgets', 'scales'

Packages suggested but not available for checking:
  'htmltools', 'shiny', 'testthat', 'rmarkdown', 'reshape2',
  'roxygen2', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bookdown', 'dplyr', 'ggplot2', 'rmarkdown', 'xaringan', 'pdftools',
  'servr', 'readr', 'tidytext', 'bib2df', 'stringr', 'fs', 'usethis',
  'gender', 'pagedown'

Packages suggested but not available for checking:
  'testthat', 'kableExtra', 'DT', 'leaflet', 'modelsummary', 'gt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'readxl', 'rvest', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘R2jags’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fs', 'readr', 'strex', 'stringr'

Packages suggested but not available for checking:
  'covr', 'EBImage', 'mockery', 'rmarkdown', 'spelling', 'testthat',
  'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda.usc’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lhs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'magick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘magick’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'magick', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘magick’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘magick’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dae', 'ggplot2', 'readxl', 'Hmisc', 'GGally', 'reshape'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'magick', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'magick', 'OpenImageR'

Packages suggested but not available for checking:
  'ggplot2', 'scales', 'shiny', 'testthat', 'mockery', 'rmarkdown',
  'furrr', 'future', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘magick’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘magick’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘magick’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'imager', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tesseract'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'stringr', 'downloader', 'igraph'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'dplyr', 'scales', 'testthat', 'raster',
  'spatstat.geom', 'magick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'keras', 'magick', 'dplyr'

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'magick'

Package suggested but not available for checking: ‘opencv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'distributions3', 'dplyr', 'lubridate', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rcccd', 'RANN', 'Rfast', 'SMOTEWB'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'KernelKnn', 'ggplot2', 'Rcpp', 'smotefamily', 'FNN', 'C50',
  'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RNifti'

Packages suggested but not available for checking: 'mmand', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatstat.geom’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr', 'janitor'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'IsingSampler', 'igraph', 'qgraph'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'MBESS'

Package suggested but not available for checking: ‘mediation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Packages required but not available:
  'caret', 'tidyverse', 'ggpubr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'downloader', 'farver', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'magick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'magick', 'ggplot2', 'usethis', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'e1071', 'xgboost', 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mvnfast', 'Rfast'

Packages suggested but not available for checking:
  'gmp', 'rmarkdown', 'Rmpfr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mixtools', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'future.apply', 'ggplot2'

Packages suggested but not available for checking:
  'ALEPlot', 'caret', 'covr', 'e1071', 'future.callr', 'glmnet',
  'keras', 'mlr', 'mlr3', 'patchwork', 'ranger', 'rmarkdown',
  'testthat', 'yaImpute'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'igraph', 'clusterProfiler', 'DOSE', 'dplyr', 'openxlsx',
  'org.Hs.eg.db', 'proxyC', 'visNetwork', 'ggplot2', 'ggheatmap',
  'factoextra'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CDM', 'Rcpp', 'sirt', 'TAM', 'RcppArmadillo'

Package which this enhances but not available for checking: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'pROC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'caret', 'e1071', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'stringr', 'plyr', 'reshape2', 'ggplot2', 'ggthemes',
  'repmis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'MLmetrics', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'rvest', 'devtools', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'missForest', 'missMDA', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caTools', 'parallelDist', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'dplyr', 'lubridate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lubridate', 'lvmisc', 'Rcpp', 'stringr', 'toOrdinal', 'vroom'

Packages suggested but not available for checking:
  'accdata', 'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tableHTML', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'dbplyr'

Packages suggested but not available for checking:
  'Lahman', 'lubridate', 'odbc', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘dplyr’
'LazyData' is specified without a 'data' directory
Running examples in ‘importar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: import
> ### Title: This function imports/loads packages as in 'Python', i.e.,
> ###   "import package as alias"
> ### Aliases: import
> 
> ### ** Examples
> 
> import(dplyr, d)
Error in library(package., character.only = TRUE) : 
  there is no package called ‘dplyr’
Calls: import -> <Anonymous> -> withCallingHandlers -> library
Execution halted
Packages required but not available: 'Hmisc', 'readxl', 'haven'

Packages suggested but not available for checking:
  'shiny', 'shinyBS', 'shinythemes', 'compareGroups'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'haven', 'sf', 'rio'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tolerance’

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'tidyr', 'cowplot', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'prettydoc', 'rmarkdown', 'R.rsp', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'R.rsp'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘parsnip’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pcaMethods’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'covr'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'stringr', 'broom'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mice', 'extremevalues'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reshape2’

Packages suggested but not available for checking:
  'testthat', 'caret', 'glmnet', 'Cubist', 'gbm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'forecast', 'ggplot2', 'imputeTS', 'reshape2', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggtext', 'forecast', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'tsibble', 'rmarkdown', 'covr'

VignetteBuilder packages required for checking but not installed:
  'R.rsp', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'igraph', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'reshape2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tidyverse', 'caret', 'ggplot2', 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘extRemes’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lhs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘survey’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'dplyr', 'testthat'
Running examples in ‘incase-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: if_case
> ### Title: Pipe-friendly vectorized if
> ### Aliases: if_case
> 
> ### ** Examples
> 
> x <- c(1, 2, 5, NA)
> 
> # if_case() produces the same output as dplyr::if_else()
> if_case(x > 3, "high", "low", "missing")
[1] "low"     "low"     "high"    "missing"
> dplyr::if_else(x > 3, "high", "low", "missing")
Error in loadNamespace(x) : there is no package called ‘dplyr’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'genefilter', 'RankProd'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'ggplot2', 'scales', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dtwclust', 'parallelDist', 'rucrdtw',
  'R.rsp', 'dendextend', 'reshape2', 'fastcluster'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'Rcpp', 'orca', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'scales', 'rmarkdown', 'clock', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'CDMConnector', 'dbplyr', 'dplyr', 'ggplot2', 'scales', 'lubridate',
  'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'RPostgres', 'duckdb', 'odbc', 'Hmisc', 'testthat',
  'spelling', 'PaRe'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'covr', 'rmarkdown', 'scales', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'xml2'

Packages suggested but not available for checking: 'backbone', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'suncalc', 'lubridate'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'cubature', 'ggplot2', 'plyr'

Packages suggested but not available for checking: 'survey', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'future.apply'

Packages suggested but not available for checking:
  'future.callr', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ape', 'phangorn'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘osqp’

Package suggested but not available for checking: ‘cobalt’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FNN’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'lubridate', 'RcppBDT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'tidyr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'fs', 'gfonts'

Packages suggested but not available for checking:
  'rcmdcheck', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gplots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'SixSigma'

Packages suggested but not available for checking:
  'stringr', 'scales', 'janitor', 'patchwork', 'broom', 'viridis',
  'learnr', 'DoE.base', 'car', 'qicharts2', 'ggforce', 'ggraph',
  'tidygraph', 'igraph', 'bookdown', 'rmarkdown', 'RcmdrMisc', 'gt',
  'skimr', 'ggtext'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'lubridate', 'tibbletime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'hdi', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggthemes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ComplexHeatmap', 'dplyr', 'ggnetwork', 'ggplot2', 'ggraph',
  'patchwork', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'igraph', 'precrec', 'pROC', 'testthat', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'ggplot2', 'patchwork', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'devtools', 'fs', 'parsnip', 'rmarkdown', 'stringr',
  'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'xplorerr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reshape2', 'ggplot2', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package unavailable to check Rd xrefs: ‘minfi’
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘covr’
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'readxl', 'tidyr', 'ggplot2', 'GGally', 'svglite'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'ggrepel', 'ROCR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'igraph', 'janitor', 'ranger', 'ggplot2'

Packages suggested but not available for checking:
  'Hmisc', 'NNS', 'readr', 'shiny', 'shinythemes', 'shinyWidgets',
  'shinyjs', 'shinycssloaders', 'colourpicker', 'DT', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nanotime', 'plyr'

Packages suggested but not available for checking: 'testthat', 'httptest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'plyr'

Packages suggested but not available for checking: 'reshape2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package which this enhances but not available for checking: ‘gurobi’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/infotheo.Rcheck/00install.out’ for details.
Package required but not available: ‘nloptr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

Package suggested but not available for checking: ‘rNOMADS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spaMM', 'blackbox', 'viridis', 'ranger'

Packages suggested but not available for checking:
  'testthat', 'Rmixmod', 'caret', 'xLLiM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'DALEX', 'ranger', 'testthat', 'r2d3', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library (testthat);
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'metR', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'kableExtra', 'rmarkdown', 'spelling', 'survminer', 'lme4',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spdep’

Package suggested but not available for checking: ‘INLA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fmesher', 'dplyr', 'plyr', 'sf', 'terra'

Packages suggested but not available for checking:
  'covr', 'ggmap', 'ggplot2', 'INLA', 'patchwork', 'raster', 'rgl',
  'rmarkdown', 'scales', 'shiny', 'spatstat.geom', 'sphereplot',
  'tidyterra', 'testthat', 'tidyr', 'DiagrammeR'

Package which this enhances but not available for checking: ‘stars’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'ggplot2'

Packages suggested but not available for checking:
  'INLA', 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'fmesher'

Packages suggested but not available for checking:
  'INLA', 'inlabru', 'ggplot2', 'rmarkdown', 'rnaturalearth'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘scales’

Packages suggested but not available for checking:
  'connectapi', 'covr', 'pkgdown', 'pkgload', 'rcmdcheck', 'rmarkdown',
  'roxygen2', 'rsconnect'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'future.apply', 'future'
Package suggested but not available for checking: ‘Rcpp’
Package required but not available: ‘tm’

Packages suggested but not available for checking:
  'connectapi', 'covr', 'DT', 'htmltools', 'htmlwidgets', 'kableExtra',
  'pkgdown', 'rmarkdown', 'rsconnect', 'stringi', 'usethis',
  'webshot2', 'wordcloud2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'torch'

Packages suggested but not available for checking:
  'covr', 'fastshap', 'GGally', 'keras', 'lime', 'luz', 'plotly',
  'rmarkdown', 'ranger', 'spelling', 'tensorflow', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'wordcloud', 'tm', 'entropart', 'stringi'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'spelling', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘suncalc’

Package suggested but not available for checking: ‘readr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'DT', 'ggplot2', 'ggpubr', 'patchwork', 'readxl',
  'shiny', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'roxygen2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'taxize'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'aphid', 'kmer', 'phylogram', 'RANN', 'seqinr', 'xml2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'tidyverse', 'lubridate', 'prettydoc', 'htmltools', 'kableExtra',
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'AER', 'afex', 'BayesFactor', 'bife', 'blavaan', 'blme', 'brms',
  'broom', 'car', 'censReg', 'cgam', 'cplm', 'crch', 'epiR',
  'estimatr', 'feisr', 'fixest', 'fungible', 'gamm4', 'gbm', 'geepack',
  'glmmTMB', 'gmnl', 'gt', 'interp', 'ivreg', 'lavaSearch2', 'lme4',
  'lmerTest', 'logistf', 'logitr', 'marginaleffects', 'MCMCglmm',
  'merTools', 'metaBMA', 'metaplus', 'mice', 'mlogit', 'mhurdle',
  'mmrm', 'multgee', 'nestedLogit', 'nonnest2', 'panelr', 'parsnip',
  'pbkrtest', 'plm', 'Rcpp', 'rmarkdown', 'rms', 'robustlmm',
  'rstanarm', 'rstantools', 'survey', 'testthat', 'truncreg', 'TMB'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'InterVA5'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘RSpectra’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggplot2', 'ggfittext', 'Rcpp', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'brms', 'dplyr', 'DT', 'ggplot2', 'lme4', 'modelr', 'pander',
  'plotly', 'readxl', 'rmarkdown', 'shiny', 'shinyalert',
  'shinyFeedback', 'shinyjs', 'shinytoastr', 'shinyvalidate',
  'tidybayes', 'tippy', 'tidyr', 'vroom', 'waiter'

Packages suggested but not available for checking:
  'spelling', 'lintr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘missMDA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Package suggested but not available for checking: ‘spelling’
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'devtools', 'rjson', 'plyr', 'ggplot2', 'testthat', 'mockery'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fs’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Title field: should not end in a period.
Packages required but not available:
  'ciTools', 'classInt', 'DHARMa', 'dplyr', 'evtree', 'ggplot2',
  'lubridate', 'patchwork', 'scales', 'stringr'

Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'intamap', 'spatstat.geom', 'automap', 'gstat', 'spcosa', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gstat', 'sf', 'automap', 'MBA'

Package suggested but not available for checking: ‘psgp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘splines2’

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘copula’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'MultivariateRandomForest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'DiagrammeR', 'DiagrammeRsvg'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'duckdb', 'pointblank', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'lubridate', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'igraph', 'intergraph', 'spatstat.geom', 'spdep',
  'viridis'

Packages suggested but not available for checking: 'spatstat', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'chngpt', 'tidyr', 'ggbeeswarm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rms', 'pryr', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'officer', 'flextable'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'jtools'

Packages suggested but not available for checking:
  'broom', 'cowplot', 'ggstance', 'huxtable', 'lme4', 'survey',
  'rmarkdown', 'testthat', 'vdiffr'

Packages which this enhances but not available for checking:
  'brms', 'rstanarm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'DT', 'shiny', 'shinyFeedback', 'waiter', 'dplyr',
  'ggrepel', 'openxlsx', 'shinyWidgets', 'readr', 'readxl',
  'FactoMineR', 'factoextra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'cowplot', 'ggplot2', 'pheatmap', 'DescTools', 'reshape2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Lmoments', 'ggplotify', 'pROC', 'ModelMetrics', 'Rcpp',
  'AER', 'future', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinyBS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'geometries'

Packages suggested but not available for checking: 'covr', 'sfheaders'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'reshape2'

Packages suggested but not available for checking:
  'kableExtra', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'arm', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppCGAL'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'Ryacas', 'ggplot2', 'stringi', 'stringr'

Package which this enhances but not available for checking: ‘RcppEigen’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'scales', 'ggbeeswarm', 'patchwork',
  'aplot', 'rmarkdown', 'flextable', 'officer', 'moonBook'

Package suggested but not available for checking: ‘PairedData’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking:
  'Rdisop', 'RSQLite', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/interpret.Rcheck/00install.out’ for details.
Package required but not available: ‘NMF’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fixest', 'glmnet'

Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘readxl’

Packages suggested but not available for checking: 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'vdiffr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) interval-internal.Rd:40: Lost braces
    40 | \item{dqfunc}{function, density of the results of the quantile function, e.g., function(x){dnorm(qnorm(x))} (used for 'general' scores, 
       |                                                                                           ^
Skipping checking math rendering: package 'V8' unavailable
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/intervals.Rcheck/00install.out’ for details.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'clinUtils', 'cowplot', 'flextable', 'ggplot2', 'ggrepel', 'officer',
  'plyr', 'reshape2', 'scales'

Packages suggested but not available for checking:
  'htmltools', 'rmarkdown', 'pander', 'testthat', 'xml2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'dplyr', 'tidyr', 'lme4', 'FactoMineR',
  'stringr', 'stringi', 'DT'

Packages suggested but not available for checking:
  'gsheet', 'rmarkdown', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gstat', 'raster', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'latticeExtra', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'mice', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'NMF', 'InterSIM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'patchwork', 'reshape2', 'scales'

Packages suggested but not available for checking:
  'rmarkdown', 'R.rsp', 'testthat', 'cleanrmd', 'devtools'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'R.rsp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gbm', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘yaImpute’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'dplyr', 'FNN', 'ggplot2', 'latex2exp', 'Rcpp', 'reshape2',
  'RcppArmadillo'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'plyr', 'lme4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'terra', 'sf', 'PointedSDMs', 'geodata', 'inlabru',
  'giscoR', 'blockCV', 'rgbif', 'tidyterra'

Packages suggested but not available for checking:
  'viridis', 'INLA', 'ggpolypath', 'lwgeom', 'spatstat', 'rmarkdown',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'Hmisc', 'plyr', 'reshape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘plyr’

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'plotly', 'plyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'GameTheoryAllocation'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘sparseLRMatrix’

Packages suggested but not available for checking:
  'covr', 'testthat', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘optimx’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nimble’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'iNZightPlots', 'testthat', 'covr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'expss', 'iNZightTools', 'lubridate', 'scales', 'stringr', 'units',
  'survey'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'dbplyr', 'ggbeeswarm', 'ggmosaic', 'ggplot2',
  'ggridges', 'ggtext', 'ggthemes', 'hextri', 'kableExtra', 'plotly',
  'RSQLite', 'testthat', 'tidyr', 'viridis', 'waffle'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'car', 'dplyr', 'GGally', 'ggplot2', 'ggrepel', 'ggtext',
  'iNZightPlots', 'patchwork'

Packages suggested but not available for checking:
  'covr', 'broom.helpers', 'iNZightTools', 'survey', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'readr', 'srvyr', 'stringr', 'survey', 'tidyr', 'units'

Packages suggested but not available for checking:
  'covr', 'dbplyr', 'expss', 'haven', 'lubridate', 'readxl', 'RSQLite',
  'styler', 'surveyspec', 'testthat', 'tsibble'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggtext', 'patchwork', 'tidyr', 'tsibble',
  'fable', 'fabletools', 'feasts', 'lubridate', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'plotly', 'shiny', 'reshape2', 'stringi',
  'rjson', 'viridis', 'Rcpp'

Packages suggested but not available for checking:
  'Rcpp', 'testthat', 'ComplexHeatmap', 'shinyjs', 'colourpicker',
  'bsplus', 'DT', 'kableExtra', 'igraph', 'shinydashboard',
  'RVCompare', 'reticulate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'matlib', 'randomcoloR', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gplots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'economiccomplexity', 'readxl', 'tidyr', 'openxlsx',
  'usethis'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) aiPux.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dls2007.Rd:19: Lost braces
    19 | impact. emph{Journal of Applied Psychology}, 92(5), 1380.
       |             ^
checkRd: (-1) paretoXX.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXX.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXX.Rd:22-23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:30-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:32-33: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'rhdf5', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'eurostat', 'tidyr', 'plyr', 'lubridate', 'kableExtra',
  'readxl'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spelling', 'covr', 'roxyglobals'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggalluvial', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
File ‘iotools/libs/iotools.so’:
  Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’,
    ‘R_WriteConnection’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages required but not available: 'reticulate', 'ggplot2', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'ggplot2', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'bignum', 'dplyr', 'fuzzyjoin', 'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'treemap', 'ape'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringi’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'KRIS', 'fpc', 'apcluster', 'Rmixmod'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'future', 'promises', 'redux'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'testthat', 'lubridate', 'eeptools', 'kableExtra',
  'gtsummary', 'stringr', 'tidyverse'

Packages suggested but not available for checking: 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gdistance', 'sf', 'raster'

Packages suggested but not available for checking:
  'gstat', 'spatstat', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'dplyr', 'lubridate'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'tidyr', 'readr'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr', 'mlr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'apcluster', 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Packages required but not available: 'ggplot2', 'sommer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'covr', 'lme4', 'rmarkdown', 'roxygen2', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'growthrates', 'kableExtra', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘stringi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘prodlim’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'reshape2', 'scales', 'RcppEigen'

Packages suggested but not available for checking:
  'caret', 'R.rsp', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'secr', 'Rcpp', 'stringr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'FrF2', 'rmarkdown', 'sf', 'spatstat', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'phangorn', 'plyr', 'seqinr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'extraDistr'

Packages suggested but not available for checking:
  'GGally', 'rmarkdown', 'testthat', 'tidyr', 'huxtable', 'bookdown',
  'BiocStyle'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'haven', 'hipread', 'readr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'dbplyr', 'DT', 'ggplot2', 'htmltools', 'rmapshaper',
  'rmarkdown', 'RSQLite', 'scales', 'sf', 'shiny', 'testthat', 'tidyr',
  'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggforce', 'ggplot2', 'stringr', 'reshape2'

Packages suggested but not available for checking:
  'rmarkdown', 'readxl', 'cowplot', 'gplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'mice', 'rmarkdown'
Running examples in ‘IPWboxplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: IPW.ASYM.boxplot
> ### Title: Boxplot adapted to skewness and missing values
> ### Aliases: IPW.ASYM.boxplot
> ### Keywords: quantile boxplot missing inverse probability weighted
> 
> ### ** Examples
> 
> 
> ## A real data example
> 
> 
> library(mice)
Error in library(mice) : there is no package called ‘mice’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘geepack’

Package suggested but not available for checking: ‘survey’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘miscTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'ggforce', 'ggplot2', 'plotly', 'rmarkdown', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'mlr', 'devtools', 'covr'
Package required but not available: ‘ROCR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mpath', 'xgboost'

Packages suggested but not available for checking:
  'R.rsp', 'DiagrammeR', 'Hmisc'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'GGMncv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘repr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'e1071', 'imager', 'reshape2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'twang', 'survey', 'ggplot2', 'ggthemes', 'rstanarm',
  'RSelenium', 'rvest', 'DisImpact', 'tidygeocoder', 'sf', 'tigris',
  'tidycensus'

Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RcppRoll’

Packages suggested but not available for checking:
  'rmarkdown', 'DiagrammeR', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid NAMESPACE file, parsing gives:
Error in utils::packageVersion("dplyr"): there is no package called ‘dplyr’

See section ‘Package namespaces’ in the ‘Writing R Extensions’ manual.
Packages required but not available: 'seismicRoll', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'repr', 'IRdisplay', 'pbdZMQ', 'digest'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) partial_eigen.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) partial_eigen.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:41-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:47-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'ggpubr', 'ggplot2'

Packages suggested but not available for checking: 'e1071', 'reshape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) bp.coeff.raw.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) fleiss.kappa.raw.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:17: Escaped LaTeX specials: \&
Packages required but not available:
  'tidyr', 'dplyr', 'ggplot2', 'stringr', 'ChemoSpec', 'hyperSpec',
  'units'

Packages suggested but not available for checking:
  'kableExtra', 'fda', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geepack’

Packages suggested but not available for checking: 'rmarkdown', 'MEMSS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'scales', 'plyr', 'rmarkdown'
Running examples in ‘irrICC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ci.ICC1a
> ### Title: Confidence Interval of Intraclass Correlation Coefficient (ICC)
> ###   under ANOVA Model 1A.
> ### Aliases: ci.ICC1a
> 
> ### ** Examples
> 
> #iccdata3 is a small dataset that comes with the package. Use it as follows:
> library(irrICC)
> iccdata3 #see what the iccdata3 dataset looks like
  Subject Rater1 Rater2 Rater3
1       1     12     18     NA
2       2     14     12     13
3       3     19     17     21
4       4     24     30     NA
> ci.ICC1a(iccdata3)
Error in loadNamespace(x) : there is no package called ‘plyr’
Calls: ci.ICC1a ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'DT', 'mirt', 'readxl', 'shiny', 'shinyWidgets', 'shinycssloaders',
  'rmarkdown', 'bs4Dash', 'gt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dcurver', 'ggplot2', 'usethis'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinydashboard', 'shinycssloaders', 'readxl', 'mirt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'mirt', 'digest', 'spatstat.random', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'reshape2', 'janitor', 'ggplot2', 'Rfast', 'mirt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DiagrammeR', 'tidyr'

Packages suggested but not available for checking:
  'lme4', 'mirt', 'flextable', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mirt', 'fastGHQuad'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinyAce'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'igraph', 'biclust'
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'xcms', 'rmarkdown'
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'rmarkdown', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘labourR’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ranger', 'kernlab'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'rjags', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
checkRd: (-1) analyseISE.Rd:66: Lost braces; missing escapes or markup?
    66 | 	False positive rate used for detection threshold (not output) to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                                                     ^
checkRd: (-1) analyseISE.Rd:69: Lost braces; missing escapes or markup?
    69 | 	False negative rate used to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                ^
checkRd: (-1) describeISE.Rd:71: Lost braces; missing escapes or markup?
    71 | 	False positive rate used for detection threshold (not output) to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                                                     ^
checkRd: (-1) describeISE.Rd:74: Lost braces; missing escapes or markup?
    74 | 	False negative rate used to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                ^
Running examples in ‘ISEtools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: analyseISE
> ### Title: Ion selective electrode characterisation and estimation of
> ###   sample concentrations
> ### Aliases: analyseISE
> 
> ### ** Examples
> 
> # Fast-running example with only 100 MCMC iterations for testing:
> data(LeadStdAdd)
> example2test = analyseISE(LeadStdAdd, Z = 2, temperature = 21, 
+   burnin=100, iters=200, chains=1, a.init=c(176, 146, -112), 
+   b.init=c(29, 30, 31), cstar.init=c(0.26, 0.27, 0.22), program="jags")
Error: The rjags package must be installed to use jags.
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qgraph', 'glmnet'

Package suggested but not available for checking: ‘IsingSampler’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'gganimate', 'ggplot2', 'plotly', 'shiny',
  'shinycssloaders', 'shinythemes', 'simlandr', 'tidyr'

Packages suggested but not available for checking:
  'IsingFit', 'IsingSampler', 'transformr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'plyr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘glmnet’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Packages required but not available: 'stringr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'stringr', 'stringi', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'magick', 'rmarkdown', 'sf', 'testthat', 'xml2'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/isoband.Rcheck/00install.out’ for details.
Packages required but not available:
  'stringr', 'readxl', 'dplyr', 'ggplot2', 'ggrepel', 'qgraph', 'fs',
  'tidyr', 'reshape2'

Packages suggested but not available for checking:
  'rmarkdown', 'devtools', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'tidyr', 'dplyr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Run all unit tests
  > 
  > testthat::test_check("isocalcR")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available: 'raster', 'plyr'

Packages suggested but not available for checking:
  'dendextend', 'dplyr', 'ggplot2', 'kableExtra', 'rmarkdown',
  'rasterVis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) CLM.Rd:30: Lost braces
    30 | item{tau0}{the mean circular Kendall Tau of the initial order with the data.}
       |     ^
checkRd: (-1) CLM.Rd:30: Lost braces
    30 | item{tau0}{the mean circular Kendall Tau of the initial order with the data.}
       |           ^
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'bsplus', 'DT', 'golem', 'htmltools', 'plyr', 'rmarkdown', 'shiny',
  'shinyalert', 'shinyjs'

Packages suggested but not available for checking:
  'pkgload', 'rsconnect', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘dplyr’
Packages required but not available: 'Rcpp', 'osqp'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ff’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'devtools', 'spelling', 'testthat', 'covr'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘RANN’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'tidyr', 'dplyr', 'ggplot2', 'scales', 'readr', 'openxlsx'

Packages suggested but not available for checking:
  'devtools', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'future.apply', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'interp', 'svglite', 'tinysnapshot'
Running examples in ‘isopleuros-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ternary_contour
> ### Title: Contour Lines
> ### Aliases: ternary_contour ternary_contour-method
> ###   ternary_contour,numeric,numeric,numeric-method
> ###   ternary_contour,ANY,missing,missing-method
> 
> ### ** Examples
> 
> ## Add density
> ## Data from Aitchison 1986
> ternary_plot(arctic, panel.first = ternary_grid())
> levels <- ternary_contour(arctic, value = arctic$depth, n = 100, nlevels = 10)
Error: The interp package is required. Please install it.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘shinylight’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'latticeExtra', 'rasterVis', 'spaMM', 'terra'

Packages suggested but not available for checking:
  'elevatr', 'gmp', 'magick', 'rgl', 'spelling', 'testthat', 'webshot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘coneproj’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘runjags’

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'latex2exp', 'Rcpp', 'rstan', 'rstantools', 'tidyr',
  'RcppEigen', 'StanHeaders', 'RcppParallel'

Packages suggested but not available for checking:
  'bayesplot', 'covr', 'cowplot', 'ggdist', 'ggplot2', 'ggraph',
  'igraph', 'readxl', 'rmarkdown', 'testthat', 'tidygraph', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'outliertree', 'MLmetrics', 'kernlab', 'rmarkdown', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘R2jags’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'janitor', 'openxlsx', 'readr', 'sf'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ibd’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readxl', 'terra', 'dplyr', 'tidyr', 'ggplot2', 'rio',
  'rnaturalearth', 'sf'

Packages suggested but not available for checking: 'devtools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'shinyBS', 'shinyWidgets', 'ggplot2', 'shiny', 'plotly', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'keras', 'tensorflow', 'philentropy'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qvalue', 'JADE'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) secretin.Rd:17: Lost braces
    17 |       {\code{a}: 1st sample};
       |       ^
checkRd: (-1) secretin.Rd:18: Lost braces
    18 |       {\code{b}: 2nd sample}.}
       |       ^
checkRd: (-1) secretin.Rd:20: Lost braces
    20 |       {\code{20+}: 20 minutes or longer since injection};
       |       ^
checkRd: (-1) secretin.Rd:21: Lost braces
    21 |       {\code{pre}: before injection.}}
       |       ^
checkRd: (-1) secretin.Rd:23: Lost braces
    23 |       {\code{20}:  20 minutes since injection};
       |       ^
checkRd: (-1) secretin.Rd:24: Lost braces
    24 |       {\code{30+}: 30 minutes or longer since injection};
       |       ^
checkRd: (-1) secretin.Rd:25: Lost braces
    25 |       {\code{pre}: before injection.  }}
       |       ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'reshape'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'energy', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'einsum', 'mixOmics'

Packages suggested but not available for checking:
  'nnTensor', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Cyclops', 'ParallelLogger'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'reticulate', 'testthat', 'rmarkdown'
Running examples in ‘iterors-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: r_to_py.iteror
> ### Title: Wrap an iteror to appear as a Python iterator or vice versa.
> ### Aliases: r_to_py.iteror iteror.python.builtin.object
> 
> ### ** Examples
> 
> pit <- reticulate::r_to_py(iseq(2, 11, 5))
Error in loadNamespace(x) : there is no package called ‘reticulate’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.r’ [0s/0s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'gmp', 'arrangements'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.r’ [0s/1s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'xergm.common', 'reshape2', 'igraph', 'dplyr', 'plyr', 'cowplot',
  'ggplot2', 'GGally', 'intergraph', 'tnet', 'networkDynamic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'seqinr', 'tidyr', 'ape', 'miniUI', 'shiny',
  'colourpicker', 'ggsci'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'NMF', 'pcalg'
'LazyData' is specified without a 'data' directory
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'compositions', 'readr', 'janitor', 'ggcorrplot',
  'tidyr', 'broom', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'plyr', 'car', 'forecast', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'httpcache', 'tidyr', 'stringi'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fastshap', 'ggplot2', 'isotree', 'outliertree',
  'patchwork', 'raster', 'sf', 'stars', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BSSprep’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rsample’

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘gurobi’
Packages required but not available:
  'future', 'fixest', 'ggplot2', 'ggfortify', 'wCorr', 'haven',
  'patchwork', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'AER', 'Rcpp', 'rgl', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'haven', 'MCMCpack', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ivreg', 'stringr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘locClass’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'gurobi', 'cplexAPI', 'testthat', 'splines2', 'future.apply',
  'future', 'rmarkdown', 'pander', 'AER', 'ggplot2'
checkRd: (-1) sTsls.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{pi}{the matrix E[XZ']E[ZZ']^{-1}}
       |                                   ^
checkRd: (-1) sTslsSplines.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{pi}{matrix, corresponds to E[XZ']E[ZZ']^{-1}, the first stage
       |                                               ^
Running examples in ‘ivmte-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: uSplineBasis
> ### Title: Spline basis function
> ### Aliases: uSplineBasis
> 
> ### ** Examples
> 
> ## Since the splines are declared as part of the MTR, you will need
> ## to have parsed out the spline command. Thus, this command will be
> ## called via eval(parse(text = .)). In the examples below, the
> ## commands are parsed from the object \code{splineslist} generated
> ## by \code{\link[MST]{removeSplines}}. The names of the elements in
> ## the list are the spline commands, and the elements themselves are
> ## the terms that interact with the splines.
> 
> ## Declare MTR function
> m0 = ~ x1 + x1 : uSpline(degree = 2,
+                           knots = c(0.2, 0.4)) +
+     x2 : uSpline(degree = 2,
+                   knots = c(0.2, 0.4)) +
+     x1 : x2 : uSpline(degree = 2,
+                        knots = c(0.2, 0.4)) +
+     uSpline(degree = 3,
+              knots = c(0.2, 0.4),
+              intercept = FALSE)
> 
> ## Extract spline functions from MTR function
> splineslist <- removeSplines(m0)$splineslist
> 
> ## Declare points at which we wish to evaluate the spline functions
> x <- seq(0, 1, 0.2)
> 
> ## Evaluate the splines
> eval(parse(text = gsub("uSpline\\(",
+                        "ivmte:::uSplineBasis(x = x, ",
+                         names(splineslist)[1])))
Error in loadNamespace(x) : there is no package called ‘splines2’
Calls: eval ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'flextable', 'openxlsx', 'officer', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid package aliases in Rd file 'ivprobit-package.Rd':
  ‘ivProbit-package’
Package required but not available: ‘car’

Packages suggested but not available for checking:
  'AER', 'effects', 'rmarkdown', 'testthat', 'modelsummary', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'clock', 'covr', 'dplyr', 'rmarkdown', 'testthat', 'tidyr'
Running examples in ‘ivs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: iv-containers
> ### Title: Containers
> ### Aliases: iv-containers iv_containers iv_identify_containers
> ###   iv_identify_container iv_locate_containers
> 
> ### ** Examples
> 
> library(dplyr, warn.conflicts = FALSE)
Error in library(dplyr, warn.conflicts = FALSE) : 
  there is no package called ‘dplyr’
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'forecast', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'gitear', 'kableExtra', 'lubridate', 'miniUI', 'shiny.i18n',
  'shiny', 'stringr', 'shinyWidgets'

Packages suggested but not available for checking:
  'readr', 'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘extraDistr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'rvest', 'stringr', 'readr', 'openxlsx'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'roxygen2', 'covr', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'coala', 'rmarkdown', 'testthat'
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'tm', 'stringi', 'bracer', 'qdapRegex', 'stringr', 'xmlconvert',
  'anytime', 'cffr'
Packages required but not available: 'Rcpp', 'qvalue', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'coala', 'rmarkdown', 'scrm', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DescTools', 'gmp', 'multicool', 'mvp', 'partitions', 'qspray',
  'Rcpp', 'spray'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Benchmarking', 'dplyr', 'ggplot2', 'reshape', 'tidyr', 'scales',
  'plyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'dplyr', 'tidyr', 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Carlson', 'Rcpp', 'rgl', 'Rvcg'

Packages suggested but not available for checking: 'testthat', 'RcppColors'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ICS', 'ICSNP'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/JADE.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘jagsUI’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'fst', 'posterior', 'qs', 'R2jags', 'rjags', 'targets',
  'tarchetypes'

Packages suggested but not available for checking:
  'dplyr', 'fs', 'rmarkdown', 'testthat', 'tidyr', 'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjags’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'dplyr', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'lubridate', 'stringi', 'stringr', 'snakecase', 'tidyr'

Packages suggested but not available for checking:
  'dbplyr', 'rmarkdown', 'RSQLite', 'sf', 'testthat', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'keras', 'tensorflow', 'dplyr', 'readr', 'ggplot2', 'narray',
  'lubridate', 'RcppAlgos', 'Rmpfr', 'StatRank', 'reticulate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringi', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rjags', 'R2jags', 'tidyverse', 'tidyr', 'ggplot2', 'ggExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
File ‘JavaGD/libs/JavaGD.so’:
  Found ‘__sprintf_chk’, possibly from ‘sprintf’ (C)
    Object: ‘jGDtalk.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package required but not available: ‘GA’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'reactR', 'stringr', 'readr', 'httpuv',
  'dplyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'rworldmap', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'magick'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'ggplot2'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'bookdown', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pcaPP', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'readr', 'lubridate', 'narray', 'imputeTS', 'scales',
  'philentropy', 'greybox', 'Rfast', 'dplyr', 'fastDummies'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'org.Hs.eg.db', 'AnnotationDbi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'SMUT', 'igraph'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bde', 'extraDistr', 'ggplot2', 'Rcpp', 'RcppParallel', 'rstan',
  'rstantools', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'BeyondBenford', 'fairness', 'kableExtra', 'rmarkdown',
  'samplingbook', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘openxlsx’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'rgl', 'RockFab', 'Rvcg', 'randomcoloR', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘jiebaR’
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'devtools', 'rmarkdown', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fs’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Packages suggested but not available for checking:
  'broom', 'broom.mixed', 'covr', 'dplyr', 'eyetrackingR', 'future',
  'ggplot2', 'patchwork', 'readr', 'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'readr', 'rvest', 'sf', 'stringr',
  'tidyr', 'units', 'xml2'

Packages suggested but not available for checking:
  'lwgeom', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rstan', 'Rcpp', 'jagsUI', 'shiny', 'Hmisc', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'JMbayes2', 'joineRML', 'rstanarm', 'FastJM', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'roptim'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                          ^
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                                                                               ^
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'dplyr', 'caret', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'jmvcore', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringi’

Packages suggested but not available for checking:
  'testthat', 'RProtoBuf', 'ggplot2', 'ragg', 'fastmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'jmvcore', 'car', 'ggplot2', 'vcdExtra', 'GGally', 'BayesFactor',
  'afex', 'ggridges', 'ROCR', 'ggrepel', 'dplyr'

Packages suggested but not available for checking:
  'exact2x2', 'testthat', 'semPlot', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'jmv', 'jmvcore', 'haven', 'rmarkdown', 'RProtoBuf', 'testthat'
Packages required but not available: 'ape', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'lme4', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'bindrcpp', 'dplyr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'glmnet', 'palasso', 'cornet'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

Packages which this enhances but not available for checking:
  'mice', 'remMap', 'MultivariateRandomForest', 'mcen', 'GPM', 'MTPS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjags', 'mcmcse', 'future'

Packages suggested but not available for checking:
  'rmarkdown', 'bookdown', 'ggplot2', 'ggpubr', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘rstpm2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'PSCBS', 'R.cache', 'digest', 'rmarkdown', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/jointseg.Rcheck/00install.out’ for details.
Packages required but not available: 'ggrepel', 'ggplot2'

Packages suggested but not available for checking:
  'devtools', 'MatchIt', 'WeightIt', 'optmatch', 'optweight',
  'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readxl', 'openxlsx', 'Rcpp'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Package suggested but not available for checking: ‘mitml’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'SpATS', 'fds', 'ggplot2', 'fields', 'spam'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘covr’
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'spelling', 'testthat', 'rmarkdown'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = FALSE)
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'stringr', 'shiny', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'rclipboard', 'DT', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'badger', 'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'lubridate', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'geosphere', 'stars', 'sf', 'stringr', 'tidyr', 'units'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leaflet', 'memoise', 'miniUI', 'sf', 'shiny', 'units'

Packages suggested but not available for checking:
  'lintr', 'lwgeom', 'testthat', 'rmarkdown', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'tidyr', 'navigatr', 'stickyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'bslib', 'packer', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘htmltools’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'httpuv', 'stringr', 'stringi'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ape’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'igraph', 'umap', 'kknn', 'ggplot2', 'factoextra', 'scran',
  'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mirt', 'dplyr', 'tidyr', 'ggplot2', 'ggsci'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘V8’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'stringi', 'RcppArmadillo', 'RcppGSL'

Packages suggested but not available for checking:
  'kableExtra', 'terra', 'dplyr', 'rmarkdown', 'bookdown', 'testthat',
  'boral', 'Hmsc', 'BayesComm', 'ggplot2', 'covr', 'ape', 'gstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'htmlwidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggpubr', 'survey', 'scales', 'patchwork'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'broom', 'dplyr'

Packages suggested but not available for checking:
  'covr', 'mediation', 'patchwork', 'rmarkdown', 'roxygen2', 'see',
  'stringr', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'readxl', 'DT', 'jstable', 'labelled', 'GGally', 'ggplot2',
  'haven', 'shinycustomloader', 'MatchIt', 'survey', 'jskm', 'geepack',
  'timeROC', 'shinyWidgets', 'pROC', 'Hmisc', 'see', 'readr', 'ggpubr',
  'officer', 'rvg'

Packages suggested but not available for checking:
  'testthat', 'shinytest', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘V8’

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'R.rsp', 'sf'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > #This file runs all unit tests on every R CMD check.
  > #Comment this out to disable.
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Errors in running code in vignettes:
when running code in ‘json-aaquickstart.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘json-apis.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘json-paging.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘json-aaquickstart.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘json-apis.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘json-paging.Rmd’ using ‘UTF-8’... failed to complete the test
Package required but not available: ‘V8’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘V8’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘V8’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'geepack', 'lme4', 'labelled', 'tableone', 'survey', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'xml2', 'stringr', 'readr', 'furrr', 'pryr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'future'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fontawesome', 'htmltools', 'htmlwidgets', 'jquerylib', 'miniUI',
  'shiny', 'shinyAce'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggforce', 'mniw', 'ggplot2', 'reshape2'

Packages suggested but not available for checking: 'rmarkdown', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'igraph', 'sparta', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'ess'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'pander'

Packages suggested but not available for checking:
  'broom', 'broom.mixed', 'huxtable', 'kableExtra', 'lme4', 'lmerTest',
  'pbkrtest', 'scales', 'survey', 'weights', 'rmarkdown', 'testthat',
  'vdiffr'

Packages which this enhances but not available for checking:
  'brms', 'rstanarm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readxl', 'dplyr'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'roxygen2', 'scales'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'juicyjuice', 'rvest', 'sass', 'stringr', 'xml2'

Packages suggested but not available for checking: 'readxl', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'EBImage', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘V8’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'rjson'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'sass'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'future'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RcppParallel', 'nloptr', 'Rcpp'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'data.tree', 'DiagrammeR', 'DiagrammeRsvg'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BayesFactor', 'ggplot2', 'stringr', 'shiny', 'Superpower',
  'shinydashboard', 'qpdf'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggthemes', 'ggplot2', 'ggpubr', 'mice', 'rms', 'lme4', 'digest',
  'fst'

Packages suggested but not available for checking:
  'scales', 'testthat', 'covr', 'rmarkdown', 'pander'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'aws.s3', 'dplyr', 'fs', 'ggplot2', 'lubridate', 'readr', 'stringr',
  'usethis'

Packages suggested but not available for checking:
  'covr', 'janitor', 'readxl', 'rvest', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'xml2', 'rmarkdown', 'scales', 'htmltools', 'digest',
  'svglite'

Packages suggested but not available for checking:
  'testthat', 'magick', 'formattable', 'sparkline', 'webshot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘extraDistr’

Packages suggested but not available for checking:
  'rmarkdown', 'svglite', 'tinysnapshot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'maxLik', 'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'plyr'

Packages suggested but not available for checking:
  'testthat', 'clustMD', 'ggplot2', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bigmemory', 'sqldf', 'biomaRt', 'CompQuadForm', 'igraph'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dendextend', 'stringi', 'stringr', 'transport', 'xml2'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'ROI.plugin.glpk', 'systemfonts', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CVXR', 'gmp', 'Rglpk', 'ompr', 'ompr.roi', 'ROI.plugin.glpk'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘kernlab’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'scales', 'aRtsy'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'gganimate'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'scales', 'igraph', 'stringr'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'MVN', 'stlplus', 'forecast', 'missForest', 'nonlinearTseries',
  'rgl', 'infotheo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ComplexHeatmap', 'dbscan', 'dplyr', 'ggplot2', 'rhdf5', 'tidyr',
  'umap'

Packages suggested but not available for checking:
  'rmarkdown', 'Rsamtools', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘V8’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'stringr', 'scales'

Packages suggested but not available for checking:
  'broom', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Ckmeans.1d.dp’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'copula', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'roll', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'rhandsontable', 'dplyr', 'caret', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'rhandsontable', 'dplyr', 'caret', 'e1071'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘univariateML’

Packages suggested but not available for checking:
  'extraDistr', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'cctools', 'kdecopula'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) kdist.Rd:14: Lost braces; missing escapes or markup?
    14 | The {kdist} functions dk, pk, qk and rk, calculates the K-distribution
       |     ^
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking:
  'ggplot2', 'lintr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ks’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Hmisc', 'raster', 'reshape2', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Bessel’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'equateIRT', 'mirt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'tensorflow', 'tfruns'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'rmarkdown', 'tfdatasets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reticulate', 'tensorflow', 'plotly', 'RJSONIO', 'rjson', 'tidyjson',
  'dplyr', 'echarts4r', 'magick'

Packages suggested but not available for checking:
  'keras', 'tfdatasets', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'testthat', 'nloptr', 'doFuture'

Packages suggested but not available for checking: 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'future', 'future.apply'

Packages suggested but not available for checking: 'covr', 'testthat', 'ks'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘kernlab’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ks', 'sparr', 'plyr', 'dplyr', 'GB2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'doFuture', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'rgl', 'GA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kernlab.Rcheck/00install.out’ for details.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'readxl', 'org.Hs.eg.db'
checkRd: (-1) compute_all_tests.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:65-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
Packages required but not available: 'Rcpp', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'sparr', 'spatstat.explore', 'spatstat.geom', 'spatstat.random'

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'shinyBS', 'shiny', 'htmltools', 'dplyr', 'DT', 'ggplot2', 'golem',
  'plotly', 'reactable', 'rintrojs', 'shinycssloaders',
  'shinydashboard', 'shinydashboardPlus', 'shinyhelper',
  'shinyWidgets', 'stringr', 'visNetwork'

Packages suggested but not available for checking:
  'rmarkdown', 'shinytest', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'fastmap', 'future.apply', 'fs', 'ggplot2',
  'ggrepel', 'pgdraw', 'quanteda', 'stringr', 'tidyr', 'RcppEigen'

Packages suggested but not available for checking: 'readtext', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tm', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘covr’
Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'flextable', 'officer', 'rmarkdown'

Package suggested but not available for checking: ‘semPlot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'lme4', 'testthat'
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Note: skipping ‘KFAS.Rnw’ due to unavailable dependencies: 'lme4'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘kernlab’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using knitr

Quitting from lines 26-28 [first-chunk] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
could not find function "qplot"
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'ggplot2', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fdapace', 'fda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinythemes', 'plyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'reticulate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'shiny', 'stringr'

Packages suggested but not available for checking: 'shinyjs', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘openxlsx’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'ggraph', 'scales', 'svglite', 'tinysnapshot'
Running examples in ‘khroma-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: scale_crameri_acton
> ### Title: Fabio Crameri's _acton_ Sequential Color Scheme
> ### Aliases: scale_crameri_acton scale_colour_acton scale_color_acton
> ###   scale_fill_acton scale_edge_colour_acton scale_edge_color_acton
> ###   scale_edge_fill_acton
> 
> ### ** Examples
> 
> data(faithfuld, package = "ggplot2")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘ggplot2’
Calls: data -> find.package
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'stringr', 'rio', 'dplyr', 'tidyr', 'elastic', 'Rsamtools',
  'rtracklayer'

Packages suggested but not available for checking:
  'ggplot2', 'readr', 'xml2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘RSQLite’

Packages suggested but not available for checking:
  'ggplot2', 'dbplyr', 'tidyr', 'stringr', 'ggthemes', 'ggrepel',
  'scales', 'dplyr', 'rmarkdown', 'covr', 'testthat', 'DT', 'gt',
  'lobstr', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'maxLik', 'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'memoise', 'plyr', 'pryr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ggplot2', 'testthat'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'readr', 'shiny', 'shinythemes', 'ggrepel', 'plotly',
  'dplyr', 'stringr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘spelling’
Packages required but not available: 'DNAmixturesLite', 'gRaven', 'gRbase'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) plot.pedigree.Rd:119: Lost braces; missing escapes or markup?
   119 |         {sum(x- mean(p))^2/(k^a)}
       |         ^
Package vignettes without corresponding tangle output:
  ‘kinship_code_details.Rmd’
  ‘pedigree.Rmd’
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) Kira-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Kira-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Kira-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Kira-package.Rd:26: Lost braces in \itemize; meant \describe ?
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'raster', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Bessel', 'kelvin', 'psd'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lubridate', 'dplyr'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'knockoff', 'ExtDist'

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘questionr’

Packages suggested but not available for checking: 'som', 'e1071'

Packages which this enhances but not available for checking:
  'clustMixType', 'ClustVarLV'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tm’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package which this enhances but not available for checking: ‘rkward’
checkRd: (-1) klausuR.answ-class.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:18-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:107-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:110-111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:112-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:114-116: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:117-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:119-120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:121-123: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:124-126: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:147: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:152-155: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘sf’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'coca', 'pheatmap'

Package suggested but not available for checking: ‘tikzDevice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gt', 'openxlsx', 'shiny', 'shinydashboard'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fields', 'GGally', 'ggforce', 'ggplot2', 'ggrepel',
  'gstat', 'metR'

Packages suggested but not available for checking:
  'testthat', 'sf', 'spelling', 'rmarkdown', 'RGeostats'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'blink', 'plyr', 'Rcpp', 'stringi'

Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'doRNG', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'ggplot2', 'tidyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RANN', 'mlpack', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'genieclust', 'Gmedian', 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'phylogram', 'Rcpp'

Packages suggested but not available for checking:
  'ape', 'dendextend', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rgl', 'longitudinalData', 'kml'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘longitudinalData’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'cowplot', 'ggplot2', 'pammtools', 'tidyr'

Packages suggested but not available for checking:
  'broom', 'covr', 'devtools', 'rmarkdown', 'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'RefManageR', 'digest'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'ggplot2', 'igraph', 'maptools', 'plyr',
  'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'shiny', 'miniUI', 'DT', 'digest'
'LazyData' is specified without a 'data' directory
Running examples in ‘knitrdata-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create_chunk
> ### Title: Tools for creating (data) chunks and inserting them into
> ###   Rmarkdown documents
> ### Aliases: create_chunk insert_chunk
> 
> ### ** Examples
> 
> # Use a temporary directory ----------------------------
> owd = getwd()
> td = tempdir()
> setwd(td)
> 
> # Test --------------
> library(knitrdata)
> library(magrittr) # For pipe operator
> 
> # Create new Rmarkdown document
> if (file.exists("test.create_chunks.Rmd"))
+   file.remove("test.create_chunks.Rmd")
> rmarkdown::draft("test.create_chunks.Rmd","github_document","rmarkdown",
+                  edit=FALSE)
Error in loadNamespace(x) : there is no package called ‘rmarkdown’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Found the following files/directories:
  ‘Killed after ’
Packages suggested but not available for checking:
  'bslib', 'digest', 'htmlwidgets', 'JuliaCall', 'magick', 'ragg',
  'reticulate', 'rgl', 'rmarkdown', 'sass', 'styler', 'targets',
  'tikzDevice', 'svglite', 'xml2'
Running examples in ‘knitr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: raw_block
> ### Title: Mark character strings as raw blocks in R Markdown
> ### Aliases: raw_block raw_latex raw_html
> 
> ### ** Examples
> 
> knitr::raw_latex("\\emph{some text}")
Error in loadNamespace(x) : there is no package called ‘rmarkdown’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘run-all.R’ [3s/4s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testit)
  > test_pkg("knitr")
  Error from withRestarts(stop(cond), retry_loadNamespace = function() NULL) 
  Error in loadNamespace(x) : there is no package called 'rmarkdown'
  Calls: test_pkg ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  In addition: Warning messages:
  1: In write_bib(pkgs, tempfile(), tweak = FALSE) :
    package(s) KernSmooth, MASS, Matrix, boot, class, cluster, foreign, lattice, mgcv, nlme, nnet, rpart, spatial, survival not found
  2: In write_bib(pkgs, tweak = TRUE) :
    package(s) KernSmooth, MASS, Matrix, boot, class, cluster, foreign, lattice, mgcv, nlme, nnet, rpart, spatial, survival not found
  3: In sanitize_fn("fig space/a.b") :
    Replaced special characters in figure filename 'fig space/a.b' -> 'fig_space/a.b'
  Execution halted
Packages required but not available: 'openxlsx', 'readr', 'stringr', 'xml2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'parallelDist', 'forecast', 'plyr'

Package suggested but not available for checking: ‘tsibble’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'rmarkdown', 'dplyr', 'caret', 'e1071', 'rhandsontable',
  'psycho', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'RSpectra'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ranger', 'RPtests'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'seqminer', 'bigmemory', 'CompQuadForm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'raster', 'rgbif', 'usdm', 'car', 'candisc'
checkRd: (-1) MapPolygon.Rd:20: Lost braces
    20 |   \item{shape}{If the estimators in the function link[KnowBR]{KnowBPolygon} were calculated using an external shape file, it is necessary to indicate the file in this argument. It is not necessary to select any polygon within the file, just to load the whole shape file.}
       |                                                              ^
checkRd: (-1) SurveyQ.Rd:26: Lost braces
    26 |   \item{shape}{If the estimators in the function link[KnowBR]{KnowBPolygon} were calculated using an external shape file, it is necessary to indicate the file in this argument. It is not necessary to select any polygon within the file, just to load the whole shape file.}
       |                                                              ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readxl'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'minerva', 'Rtsne', 'umap', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rgl', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘bigmemory’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pheatmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'broom.mixed', 'dplyr', 'ggplot2', 'mice', 'tidyr'

Packages suggested but not available for checking:
  'pbkrtest', 'devtools', 'lme4', 'rmarkdown', 'roxygen2', 'testthat',
  'ggrepel', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'rvest', 'stringr', 'readr', 'openxlsx'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'roxygen2', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'tm', 'shiny', 'rmarkdown', 'koRpus.lang.de',
  'koRpus.lang.es', 'koRpus.lang.fr', 'koRpus.lang.it',
  'koRpus.lang.nl', 'koRpus.lang.pt', 'koRpus.lang.ru'

Package which this enhances but not available for checking: ‘rkward’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # the tests are realized using the "testthat" package
  > # and can be found in ../inst/tests
  > 
  > require(testthat)
  Loading required package: testthat
  Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
    there is no package called 'testthat'
  > test_check("koRpus")
  Error in test_check("koRpus") : could not find function "test_check"
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'pcalg', 'energy', 'kernlab', 'RSpectra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kernlab', 'RANN', 'mlpack'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) kpmt.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kpmt.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kpmt.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kpmt.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kpmt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kpmt.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kpmt.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kpmt.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kpmt.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kpmt.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kpmt.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) compose.Rd:13: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) compose.Rd:14: Lost braces in \enumerate; meant \describe ?
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rgenoud', 'anMC'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'spam', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘rARPACK’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘kernlab’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/krm.Rcheck/00install.out’ for details.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘SuppDists’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) ks_test_stat.Rd:14: Lost braces
    14 | are valid. See /code{LcKS} for accepted functions.}
       |                     ^
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘pryr’

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gplots’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'amap', 'FactoClass', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > ##
  > ##  Unit testing file
  > ##
  > ##  Created by Daniel Rodriguez Perez on 7/12/2014.
  > ##
  > ##  Copyright (c) 2014 Daniel Rodriguez Perez.
  > ##
  > ##  This program is free software: you can redistribute it and/or modify
  > ##  it under the terms of the GNU General Public License as published by
  > ##  the Free Software Foundation, either version 3 of the License, or
  > ##  (at your option) any later version.
  > ##
  > ##  This program is distributed in the hope that it will be useful,
  > ##  but WITHOUT ANY WARRANTY; without even the implied warranty of
  > ##  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > ##  GNU General Public License for more details.
  > ##
  > ##  You should have received a copy of the GNU General Public License
  > ##  along with this program.  If not, see <http://www.gnu.org/licenses/>
  > ## 
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dbscan', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘CompQuadForm’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'kernlab', 'multicool'

Packages suggested but not available for checking: 'geometry', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'forecast', 'imputeTS', 'dplyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'kstMatrix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'GSE', 'Rcpp'

Packages suggested but not available for checking:
  'tclust', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Packages required but not available: 'plyr', 'openxlsx'

Package suggested but not available for checking: ‘rockchalk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'R.rsp', 'lme4', 'copula', 'Hmisc', 'survey', 'magick'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'reshape2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'raster', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'igraph', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mixtools', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'dplyr', 'igraph', 'aricode', 'caret', 'glmnet', 'ggplot2',
  'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) predict.l2boost.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘osqp’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'latex2exp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'ggraph'

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rtsne’

Package suggested but not available for checking: ‘optpart’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'haven', 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'questionr', 'snakecase', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'covr', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'rmarkdown', 'car', 'collapse', 'haven', 'dplyr', 'modelr'
Running examples in ‘labelr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: convert_labs
> ### Title: Convert from Haven-style to labelr Variable Value Labels
> ### Aliases: convert_labs
> 
> ### ** Examples
> 
> # convert haven vector value labels to labelr value labels
> library(haven)
Error in library(haven) : there is no package called ‘haven’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'Hmisc', 'testthat'
Running ‘tests-all.R’ [0s/1s]
Running the tests in ‘tests/tests-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'smooth', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'covr', 'mockery', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'spdep', 'tmap'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘cld2’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘Rcmdr’
Found the following files/directories:
  ‘MYSLID.csv’ ‘tabelle.csv’
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'FrF2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'janitor', 'sjmisc', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'httptest', 'mockery'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'ggplot2', 'ggtext', 'patchwork', 'lubridate',
  'stringr', 'tidyr'

Packages suggested but not available for checking:
  'bsplus', 'covr', 'datapasta', 'miniUI', 'rhandsontable',
  'rmarkdown', 'shiny', 'shinyjs', 'shinyWidgets', 'spelling',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'spatstat', 'RcppRoll', 'spatstat.explore', 'spatstat.geom',
  'spatstat.random'

Packages suggested but not available for checking:
  'cubature', 'sf', 'terra', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cowplot', 'dplyr', 'ggplot2', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'sf', 'stringr', 'tidyr', 'memoise', 'qs'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'devtools', 'R.rsp', 'ggplot2'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tgp’

Packages suggested but not available for checking:
  'interp', 'lhs', 'crs', 'DiceOptim'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatialreg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'ggplot2', 'reshape2', 'tidyr', 'rmarkdown', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rLakeAnalyzer', 'plyr'

Packages suggested but not available for checking: 'R2jags', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'sf', 'geosphere'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) lambda.r-package.Rd:71-74: Lost braces
    71 | x \%g\% y \%:=\% {
       |                  ^
Packages required but not available:
  'car', 'ggplot2', 'readr', 'stringr', 'lubridate', 'narray',
  'imputeTS', 'scales', 'torch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'webmockr', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'lamW', 'reshape2', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'fastGHQuad', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'CDM', 'Rcpp', 'sirt', 'RcppArmadillo'

Package suggested but not available for checking: ‘TAM’

Package which this enhances but not available for checking: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppParallel'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘terra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'riskRegression', 'dplyr', 'pec', 'prodlim', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) GenerateData.Rd:35-36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) landmix.estimator.Rd:59-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) landmix.estimator.Rd:67-74: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘emdbook’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘sf’
checkRd: (-1) DOS.Rd:34: Lost braces; missing escapes or markup?
    34 | 	Band-specific sensor $G_{rescale}$ (gain). Require either gain and offset or Grescale and Brescale to convert DN to radiance.
       |                                 ^
checkRd: (-1) DOS.Rd:37: Lost braces; missing escapes or markup?
    37 | 	Band-specific sensor $B_{rescale}$ (bias). Require either gain and offset or Grescale and Brescale to convert DN to radiance.
       |                                 ^
Packages required but not available:
  'ggplot2', 'Rcpp', 'terra', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'raster', 'rmarkdown', 'sf', 'stars', 'stringr',
  'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'Rcpp'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'raster', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'fields', 'sf', 'RSQLite', 'testthat'

Packages suggested but not available for checking:
  'testthat', 'shiny', 'shinyjs', 'DT', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'crosstalk', 'RANN'

Packages suggested but not available for checking: 'shiny', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'e1071', 'rms', 'Hmisc', 'lme4', 'lmerTest', 'optimx'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'fs', 'lintr', 'roxygen2', 'stringi', 'styler', 'xml2'

Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'tidyr', 'reshape2', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) LML.Rd:43: Lost braces
    43 |     is specified only with the \code{GD}, code{HME}, or \code{NSIS}
       |                                               ^
checkRd: (-1) LaplaceApproximation.Rd:485: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:115: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:117: Escaped LaTeX specials: \&
checkRd: (-1) MISS.Rd:106: Lost braces
   106 |   code{Fit$Imp}. In the presence of numerous missing values, say more
       |       ^
checkRd: (-1) Matrices.Rd:316: Lost braces
   316 |   Gauss-Hermite quadrature rules. A grid of order eqn{K} provides an
       |                                                      ^
checkRd: (-1) PMC.Rd:214: Lost braces
   214 |   item{nu}{This is the degrees of freedom parameter \eqn{\nu}{nu} for
       |       ^
checkRd: (-1) PMC.Rd:214-215: Lost braces
   214 |   item{nu}{This is the degrees of freedom parameter \eqn{\nu}{nu} for
       |           ^
checkRd: (-1) caterpillar.plot.Rd:15: Lost braces
    15 |     code{demonoid.hpc}, \code{iterquad}, \code{laplace}, \code{pmc},
       |         ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'htmltools', 'miniUI', 'shiny', 'shinydashboard',
  'shinyWidgets'

Package suggested but not available for checking: ‘lares’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'openxlsx', 'patchwork', 'pROC',
  'rvest', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'beepr', 'DALEX', 'googleAuthR', 'googlesheets4', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘treemap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'caret', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘igraph’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'pcaPP', 'fMultivar', 'heatmaply', 'ggplot2', 'plotly', 'geometry',
  'doFuture', 'future', 'doRNG'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'cubature', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

Packages suggested but not available for checking:
  'rgl', 'heplots', 'ergm.userterms', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ade4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'rmarkdown', 'reactable', 'htmltools', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fs’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'rcmdcheck', 'pkgdown', 'devtools', 'lme4',
  'covr', 'lintr', 'longitudinalData', 'kml', 'mixtools', 'fda',
  'funFEM', 'igraph', 'dtwclust', 'mixAK', 'mclustcomp', 'qqplotr',
  'simTool', 'dplyr', 'ggplot2', 'caret', 'akmedoids'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'mpoly', 'ggplot2', 'memoise', 'dplyr', 'usethis'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘interp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spam', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘latticeExtra’
Packages suggested but not available for checking:
  'rempsyc', 'flextable', 'lavaanPlot', 'DiagrammeRsvg', 'tidySEM',
  'testthat', 'rmarkdown', 'covr', 'spelling'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'DiagrammeR', 'stringr', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'DiagrammeRsvg', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'shiny', 'shinyAce', 'semPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'fastGHQuad', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Lavash', 'CVXR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future.apply', 'progressr'

Packages suggested but not available for checking:
  'fields', 'geepack', 'bookdown', 'rmarkdown', 'igraph',
  'lavaSearch2', 'lme4', 'mets', 'optimx', 'rgl', 'R.rsp', 'targeted',
  'testthat', 'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lava', 'Rcpp', 'reshape2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'lme4', 'lmerTest', 'pbkrtest', 'R.rsp', 'riskRegression', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'exdex', 'revdbayes'

Packages suggested but not available for checking:
  'eva', 'extRemes', 'mev', 'rmarkdown', 'testthat', 'texmex'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'ggbeeswarm', 'rmarkdown', 'slider',
  'testthat', 'tidyr', 'spelling'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'fstcore'

Packages suggested but not available for checking:
  'testthat', 'fst', 'rmarkdown', 'dipsaus'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘forecast’
'LazyData' is specified without a 'data' directory
Found the following calls to attach():
File ‘lazyData/R/requireData.R’:
  attach(NULL, pos = pos, name = searchDataName)
See section ‘Good practice’ in ‘?attach’.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sf', 'dbplyr', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readr', 'stringr', 'dplyr', 'lubridate', 'ggplot2',
  'ReinforcementLearning'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'optimx', 'RcppArmadillo', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'survey', 'maxLik', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'ggplot2', 'Rcpp', 'shiny', 'tidyr'

Packages suggested but not available for checking:
  'scales', 'shinyBS', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'shiny', 'trekcolors'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggrepel', 'leaflet', 'leaflet.extras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GA', 'memoise'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'doRNG'

Packages suggested but not available for checking:
  'roxygen2', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Found the following files/directories:
  ‘temp.float.csv’ ‘temp.result.athena.csv’
Package required but not available: ‘MCMCpack’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/LCMCR.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'bsplus', 'DT', 'ggplot2', 'plotly', 'shiny', 'shinycssloaders',
  'shinyjs', 'shinyWidgets'

Packages suggested but not available for checking:
  'xcms', 'MSnbase', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found export directive that requires package ‘methods’:
  ‘exportClasses’
Remove all such namespace directives (if obsolete) or ensure that the
DESCRIPTION Depends or Imports field contains ‘methods’.
Packages required but not available: 'sf', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'copula', 'Rcpp'

Package suggested but not available for checking: ‘wdm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjags’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'broom', 'semPlot', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape', 'weights'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyBS', 'shinydashboard', 'shinyWidgets', 'shinyalert',
  'shinybusy', 'shinyjs', 'shinycssloaders', 'dplyr', 'ggplot2',
  'rvest', 'DT', 'highcharter', 'tidyr', 'ldatuning', 'topicmodels',
  'textmineR', 'chinese.misc', 'stringr', 'htmlwidgets', 'ggrepel',
  'qgraph', 'factoextra', 'quanteda'

Packages suggested but not available for checking:
  'rmarkdown', 'beepr', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'iterpc', 'kSamples', 'car', 'gmp'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'batchtools', 'dendextend', 'fs', 'future'

Packages suggested but not available for checking:
  'covr', 'testthat', 'tosca'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'reshape2', 'ggplot2', 'penalized'
Argument items with no description in Rd file 'top.topic.words.Rd':
  ‘alpha’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'beepr', 'broom', 'chinese.misc', 'dplyr', 'DT', 'highcharter',
  'htmlwidgets', 'ldatuning', 'plotly', 'quanteda', 'shiny',
  'shinyalert', 'shinyBS', 'shinycssloaders', 'shinydashboard',
  'shinyjs', 'shinyWidgets', 'stringr', 'textmineR', 'tidyr',
  'tidytext', 'tm', 'topicmodels'

Packages suggested but not available for checking:
  'rmarkdown', 'Rmpfr', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales', 'visNetwork'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'extraDistr', 'lubridate', 'memoise', 'topicmodels',
  'viridis'

Packages suggested but not available for checking:
  'pkgdown', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'topicmodels', 'Rmpfr', 'ggplot2', 'reshape2', 'scales'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RJSONIO’

Packages suggested but not available for checking:
  'topicmodels', 'gistr', 'servr', 'shiny', 'rmarkdown', 'digest',
  'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RANN’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'dplyr', 'plyr', 'tidyr', 'ggplot2', 'latex2exp', 'reshape2',
  'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'optimx', 'scales', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'R.rsp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'caretEnsemble', 'lares', 'ggplot2', 'janitor',
  'philentropy'

Packages suggested but not available for checking:
  'rmarkdown', 'Cubist', 'gbm', 'glmnet', 'kernlab', 'tidyr',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spelling'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'GUniFrac', 'BiocParallel', 'castor', 'phangorn'

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'keras', 'devtools', 'reticulate', 'tensorflow'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'ashr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'updog', 'VariantAnnotation'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'GA', 'rmarkdown', 'testthat', 'ggplot2', 'patchwork', 'doFuture',
  'future'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'tdata'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'kableExtra', 'systemfit'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'shiny', 'shinyjs'

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown', 'shinytest', 'dplyr', 'htmltools',
  'raster', 'rmapshaper', 'shinycssloaders'

VignetteBuilder package required for checking but not installed: ‘shinycssloaders’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'geojsonsf', 'htmltools', 'htmlwidgets', 'leaflet', 'raster', 'sf'

Packages suggested but not available for checking:
  'leafgl', 'lwgeom', 'mapdeck', 'plainview', 'stars'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'geojsonsf', 'htmltools', 'jsonify', 'leaflet', 'sf'

Packages suggested but not available for checking:
  'colourvalues', 'shiny', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'htmltools', 'htmlwidgets'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leaflet', 'leaflet.extras', 'htmltools'

Package suggested but not available for checking: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'htmltools'

Packages suggested but not available for checking:
  'shiny', 'sf', 'geojsonsf', 'testthat', 'fontawesome', 'htmlwidgets',
  'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leaflet', 'htmlwidgets', 'htmltools', 'stringr'

Package suggested but not available for checking: ‘readr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'htmltools'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'shiny', 'manipulateWidget', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

Packages suggested but not available for checking: 'testthat', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'crosstalk', 'htmltools', 'htmlwidgets', 'jquerylib',
  'leaflet.providers', 'raster', 'scales', 'viridis'

Packages suggested but not available for checking:
  'RJSONIO', 's2', 'sf', 'shiny', 'terra', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'htmltools', 'htmlwidgets', 'leaflet', 'sf'

Package suggested but not available for checking: ‘testthat’

Packages which this enhances but not available for checking:
  'geojsonio', 'mapedit', 'mapview', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'sf', 'svglite'

Package suggested but not available for checking: ‘leaflet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lidR', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'htmlwidgets', 'leaflet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'htmlwidgets', 'htmltools'

Package suggested but not available for checking: ‘geojsonio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Packages suggested but not available for checking:
  'rmarkdown', 'ROCR', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sva’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) leaps.Rd:38: Escaped LaTeX specials: \&
Package required but not available: ‘opencpu’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘magick’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Package required but not available: ‘magick’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readxl', 'haven', 'readODS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'ChemoSpec', 'chemometrics', 'roxut', 'rmarkdown', 'ade4',
  'latex2exp', 'plotly', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘phytools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'roxygen2', 'devtools', 'rmarkdown'
Packages required but not available:
  'digest', 'htmltools', 'htmlwidgets', 'promises', 'rmarkdown',
  'shiny'

Packages suggested but not available for checking:
  'bslib', 'httpuv', 'later', 'reticulate', 'RSQLite', 'shinytest2',
  'sortable', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'terra', 'sf', 'igraph', 'gstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'rio', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'glmmTMB', 'lme4', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'Rcompadre'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'greybox', 'smooth', 'Rcpp', 'nloptr', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pROC', 'Hmisc', 'glmnet', 'lme4'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'readr', 'stringr', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'Rcpp', 'sccore', 'RcppArmadillo', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'igraph'

Packages suggested but not available for checking:
  'bipartite', 'covr', 'devtools', 'graphsim', 'multinet', 'qpdf',
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr', 'tidyr', 'future', 'furrr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr', 'scales'

Packages suggested but not available for checking:
  'rmarkdown', 'stringr', 'dplyr', 'testthat', 'vdiffr', 'diffviewer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'usethis', 'roxygen2'

Packages suggested but not available for checking:
  'bslib', 'covr', 'sass', 'htmltools', 'packer', 'shiny', 'testthat',
  'pkgload'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

Packages suggested but not available for checking:
  'covr', 'maptools', 'rmarkdown', 'sf', 'testthat', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'caret', 'e1071', 'FNN', 'MLmetrics', 'RANN', 'wordspace'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'latticeExtra', 'openxlsx', 'shiny'

Packages suggested but not available for checking:
  'rmarkdown', 'haven', 'readODS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppArmadillo', 'RcppParallel', 'ggplot2', 'tidyr',
  'stringr'

Packages suggested but not available for checking: 'plotly', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'terra', 'geosphere', 'sf'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'rmarkdown', 'dplyr', 'kableExtra', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'pkgdown', 'rmarkdown', 'styler', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'tidyverse', 'rmarkdown', 'testthat', 'future.apply'
Documented arguments not in \usage in Rd file 'get_generic.Rd':
  ‘mismatch’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘syuzhet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'quanteda', 'quanteda.textstats', 'stringi'

Packages suggested but not available for checking:
  'corpustools', 'covr', 'dplyr', 'RSQLite', 'testthat', 'tidytext',
  'tm', 'kableExtra', 'pdftools', 'rmarkdown', 'spelling', 'striprtf',
  'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Package suggested but not available for checking: ‘HMDHFDplus’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'shiny', 'shinyjs', 'shinythemes', 'shinyFiles', 'shinyMobile',
  'EBImage', 'DT', 'ggplot2', 'fs'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'DESeq2'
Packages required but not available: 'plyr', 'rARPACK'

Packages suggested but not available for checking: 'testthat', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'digest', 'igraph', 'plm', 'cubature', 'alpaca', 'testthat'
Found the following significant warnings:
  utils.c:34:85: warning: format specifies type 'int' but the argument has type 'mybigint_t' (aka 'long') [-Wformat]
  utils.c:283:16: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lfe.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 17.0.6 (5)’
Error(s) in re-building vignettes:
  ...
--- re-building ‘biascorrection.Rnw’ using knitr
--- finished re-building ‘biascorrection.Rnw’

--- re-building ‘identification.Rnw’ using knitr
--- finished re-building ‘identification.Rnw’

--- re-building ‘lfehow.Rnw’ using knitr
--- finished re-building ‘lfehow.Rnw’

--- re-building ‘speed.Rnw’ using knitr

Quitting from lines 144-156 [unnamed-chunk-9] (speed.Rnw)
Error: processing vignette 'speed.Rnw' failed with diagnostics:
there is no package called 'igraph'
--- failed re-building ‘speed.Rnw’

SUMMARY: processing the following file failed:
  ‘speed.Rnw’

Error: Vignette re-building failed.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'forecast', 'plyr', 'e1071'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rmarkdown', 'RSpectra', 'ggplot2', 'readr', 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dygraphs', 'latticeExtra', 'plyr', 'scales'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lgarch.Rcheck/00install.out’ for details.
Packages required but not available:
  'spatstat.geom', 'spatstat.explore', 'sf', 'raster', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'monobin'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CompQuadForm', 'SKAT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'bayesplot',
  'ggplot2', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'localgauss', 'ggplot2', 'ks', 'np'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Packages suggested but not available for checking:
  'covr', 'elastic', 'gmailr', 'RMariaDB', 'rmarkdown', 'RPostgres',
  'RSQLite', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'CompQuadForm', 'SKAT', 'geepack'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'future', 'future.apply', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'devtools'
checkRd: (-1) dij.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{i}{A positive integer, which stands for the i^{th} row of \code{X}.}
       |                                                     ^
checkRd: (-1) dij.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{j}{A positive integer, which stands for the j^{th} row of \code{X}. Both \code{i} and \code{j} should be in [1,nrow(X)] and they should not be equal to each other.}
       |                                                     ^
checkRd: (-1) exchange.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{j}{A positive integer, which stands for the j^{th} column (or row) of \code{X}, and it should be within [1,ncol(X)] (or [1,nrow(X)]).}
       |                                                     ^
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'DoE.base', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'xml2'

Packages suggested but not available for checking:
  'assertr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/libgeos.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/LiblineaR.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘igraph’
checkRd: (-1) isingdata.Rd:14: Lost braces; missing escapes or markup?
    14 |     \item{X}{a 5000-by-100 matrix, each entry is in {-1,1}.}
       |                                                     ^
checkRd: (-1) predict.lb.Rd:16: Escaped LaTeX specials: \$
Running examples in ‘Libra-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ising
> ### Title: Linearized Bregman solver for composite conditionally likelihood
> ###   of Ising model with lasso penalty.
> ### Aliases: ising
> ### Keywords: regression
> 
> ### ** Examples
> 
> 
> library('Libra')
> library('igraph')
Error in library("igraph") : there is no package called ‘igraph’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'readr', 'readxl', 'haven', 'openxlsx', 'dplyr', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'fmtr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppGSL'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'terra', 'sf', 'imager', 'car', 'reldist', 'lidR'

Packages suggested but not available for checking: 'stars', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'classInt', 'Rcpp', 'rgl', 'rlas', 'sf', 'stars', 'terra',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'EBImage', 'future', 'geometry', 'gstat', 'raster', 'RCSF', 'RMCC',
  'rjson', 'mapview', 'mapedit', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'markovchain', 'Rcpp'

Packages suggested but not available for checking:
  'demography', 'forecast', 'testthat', 'StMoMo', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘TraMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'lintr', 'rmarkdown', 'testthat', 'tidyverse'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Hmisc', 'optimx'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘LifeInsureR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'MortalityTables', 'lubridate', 'openxlsx', 'dplyr', 'scales',
  'stringr', 'rmarkdown', 'kableExtra', 'pander', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'fs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'shiny', 'dplyr', 'lubridate', 'modelr', 'stringr',
  'tidyr', 'fitbitScraper', 'plyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leaflet', 'shiny', 'dplyr', 'leaflet.minicharts', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'readr', 'rmarkdown', 'stringr', 'ggplot2', 'maptiles',
  'terra', 'tidyterra'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'gWidgets', 'gWidgetsRGtk2', 'RGtk2'
Packages required but not available: 'rmarkdown', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
checkRd: (-1) lx_list_lights.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:27: Lost braces in \itemize; meant \describe ?
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lightgbm.Rcheck/00install.out’ for details.
Package required but not available: ‘RJSONIO’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'future.apply', 'progressr', 'xml2'

Packages suggested but not available for checking:
  'digest', 'pavo', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinyjs'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Package suggested but not available for checking: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) likelihood_calculation.Rd:24: Lost braces
    24 | For eqn{i = 1\dots N} independent observations in a vector \var{X}, with individual observations \eqn{x_i}{xi}, and a set of parameter values \eqn{\theta}:
       |        ^
checkRd: (-1) simulated_annealing_algorithm.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:27: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'reshape2', 'plyr'

Packages suggested but not available for checking: 'devtools', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'car', 'caret', 'dplyr', 'gbm', 'ggplot2', 'glmnet', 'infotheo',
  'M3C', 'MLmetrics', 'princurve', 'pathview', 'plyr', 'pROC', 'RCy3',
  'reticulate', 'reshape', 'scales', 'stringr', 'survminer'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FNN', 'stringi', 'beepr', 'ggplot2', 'keras', 'dplyr', 'readr',
  'tm', 'e1071'

Package suggested but not available for checking: ‘textclean’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'ggplot2', 'stringi', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'xgboost', 'testthat', 'mlr', 'text2vec', 'covr', 'rmarkdown',
  'magick', 'keras', 'htmlwidgets', 'shiny', 'shinythemes', 'ranger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tourr', 'shiny', 'vegawidget', 'miniUI', 'dplyr'

Packages suggested but not available for checking:
  'Rtsne', 'rmarkdown', 'covr', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'ggplot2', 'ggrepel', 'testthat'
Running examples in ‘limonaid-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: processLimeSurveyDropouts
> ### Title: Process LimeSurvey dropouts
> ### Aliases: processLimeSurveyDropouts
> 
> ### ** Examples
> 
> limonaid::processLimeSurveyDropouts(c(1,2,1,1,2,3,2,2,3,2,1));
Error in limonaid::processLimeSurveyDropouts(c(1, 2, 1, 1, 2, 3, 2, 2,  : 
  To process the LimeSurvey dropouts, you need to have both the {ggplot2} and {ggrepel} packages installed. You can install them with:

  install.packages(c('ggplot2', 'ggrepel'));
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ashr', 'DESeq2', 'mashr'

Packages suggested but not available for checking:
  'cowplot', 'ggplot2', 'qs', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'annotate', 'ggplot2', 'org.Mm.eg.db', 'qs', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library('testthat')
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
checkRd: (-1) LIMEcoli.Rd:125: Escaped LaTeX specials: \_
checkRd: (-1) Read.Rd:88: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:92: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:98: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:104: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:105: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:106: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:107: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:108: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:109: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:110: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:111: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:112: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:114: Escaped LaTeX specials: \# \#
Package vignette without corresponding tangle output:
  ‘LIMecoli.Rnw’
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lamW’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'ggplot2', 'viridis', 'tidyr', 'readr', 'forecast'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'devtools', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'crosstalk', 'rmarkdown', 'testthat', 'lintr', 'styler', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qtl’

Packages suggested but not available for checking:
  'roxygen2', 'rmarkdown', 'devtools', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘broom’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppThread'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kableExtra', 'rmarkdown', 'htmltools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'leaflet.minicharts'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'sf', 'ape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'shiny', 'miniUI', 'DT'

Packages suggested but not available for checking:
  'pkgdown', 'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'devtools', 'roxygen2', 'sf', 'stringr', 'terra', 'xml2'

Packages suggested but not available for checking:
  'rmarkdown', 'rgrass', 'stars', 'listviewer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qtl’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Packages suggested but not available for checking: 'fastcluster', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nloptr', 'spBayes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages suggested but not available for checking:
  'BGData', 'ff', 'bigmemory'
Running examples in ‘LinkedMatrix-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ColumnLinkedMatrix-class
> ### Title: A Class for Linking Matrices by Columns or Rows
> ### Aliases: ColumnLinkedMatrix-class RowLinkedMatrix-class
> ### Keywords: classes
> 
> ### ** Examples
> 
> # Create various matrix-like objects that correspond in dimensions
> m1 <- ff::ff(initdata = rnorm(50), dim = c(5, 10))
Error in loadNamespace(x) : there is no package called ‘ff’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available: 'igraph', 'intergraph'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'visNetwork', 'infotheo', 'minerva', 'energy', 'rAmCharts',
  'ggplot2', 'dplyr', 'tidyr', 'shinybusy'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'htmltools', 'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'shiny'
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) solveLP.Rd:119: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘AER’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'digest', 'xml2'

Packages suggested but not available for checking:
  'bookdown', 'mockery', 'patrick', 'rmarkdown', 'testthat', 'tufte'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RJSONIO’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'readMzXmlData', 'scales', 'shinythemes'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'reshape2', 'shadowtext', 'stringr', 'tableone',
  'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘rjags’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr'
Running examples in ‘listcompr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gen.logical.and
> ### Title: Generate Logical Conditions with List Comprehension
> ### Aliases: gen.logical.and gen.logical.or
> 
> ### ** Examples
> 
> # Returns a_1 == 1 & a_2 == 2 & a_3 == 3
> gen.logical.and(a_i == i, i = 1:3)
a_1 == 1L & (a_2 == 2L & a_3 == 3L)
> 
> # A data frame of tuples (x_1, x_2, x_3, x_4) summing up to 10 with x_i <= x_(i+1)
> gen.data.frame(c(x_1, ..., x_4), x_ = 1:10, x_1 + ... + x_4 == 10, 
+                gen.logical.and(x_i <= x_(i+1), i = 1:3))
  x_1 x_2 x_3 x_4
1   2   2   3   3
2   1   3   3   3
3   2   2   2   4
4   1   2   3   4
5   1   1   4   4
6   1   2   2   5
7   1   1   3   5
8   1   1   2   6
9   1   1   1   7
> 
> # Get all permutations of 1:4
> gen.data.frame(c(a_1, ..., a_4), a_ = 1:4, 
+                gen.logical.and(a_i != a_j, i = 1:4, j = (i+1):4))
   a_1 a_2 a_3 a_4
1    4   3   2   1
2    3   4   2   1
3    4   2   3   1
4    2   4   3   1
5    3   2   4   1
6    2   3   4   1
7    4   3   1   2
8    3   4   1   2
9    4   1   3   2
10   1   4   3   2
11   3   1   4   2
12   1   3   4   2
13   4   2   1   3
14   2   4   1   3
15   4   1   2   3
16   1   4   2   3
17   2   1   4   3
18   1   2   4   3
19   3   2   1   4
20   2   3   1   4
21   3   1   2   4
22   1   3   2   4
23   2   1   3   4
24   1   2   3   4
>                
> # Get again the permutations of 1:4, using filter from dplyr 
> df <- gen.data.frame(c(a_1, ..., a_4), a_ = 1:4)
> dplyr::filter(df, !!gen.logical.and(a_i != a_j, i = 1:3, j = (i+1):4))
Error in loadNamespace(x) : there is no package called ‘dplyr’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.r’ [0s/0s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'rmarkdown', 'fs'

Packages suggested but not available for checking:
  'DT', 'ggplot2', 'testthat'

Package which this enhances but not available for checking: ‘workflowr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
'LazyData' is specified without a 'data' directory
Package required but not available: ‘arm’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'htmltools', 'htmlwidgets', 'shiny'

Package suggested but not available for checking: ‘miniUI’

Package which this enhances but not available for checking: ‘reactR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘RSQLite’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/literanger.Rcheck/00install.out’ for details.
Packages required but not available: 'exdex', 'revdbayes', 'rust'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'genio', 'CompQuadForm', 'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Packages suggested but not available for checking: 'stylo', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'devtools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readr', 'stringr', 'dplyr', 'tidyr', 'fs', 'ggplot2', 'rmarkdown'

Packages suggested but not available for checking: 'kableExtra', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'simplermarkdown', 'rcmdcheck', 'foghorn'

VignetteBuilder package required for checking but not installed: ‘simplermarkdown’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) lstats.liu.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) vcov.liu.Rd:20: Lost braces
    20 | A list of matrix of estimated covariances in the linear Liu regression model for scalar or vector biasing parameter \code{d}{d} is produced. Each list element has row and column names corresponding to the parameter names given by the \code{coef(mod)}. List items are named correspond to values of biasing parameter \eqn{d}{d}.}
       |                                                                                                                             ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'mlr', 'dplyr', 'breakDown', 'forestmodel', 'shiny', 'ggplot2',
  'e1071'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'glmnet', 'covr', 'DALEX'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'pROC', 'skimr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'LiblineaR', 'glmnet', 'glmnetUtils', 'lme4', 'pROC'

Packages suggested but not available for checking:
  'rmarkdown', 'caret', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mlr', 'ggplot2', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'StanHeaders', 'Rcpp', 'rstan', 'MCMCpack'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'survey', 'reghelper', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'openxlsx', 'digest', 'ggplot2', 'svglite', 'dplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'sommer', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'EMD', 'ggplot2', 'patchwork'

Packages suggested but not available for checking:
  'rmarkdown', 'ggformula', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dynutils’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'minqa', 'nloptr', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'rmarkdown', 'MEMSS', 'testthat', 'ggplot2', 'mlmRev', 'optimx',
  'gamm4', 'pbkrtest', 'car', 'rr2', 'semEff', 'merDeriv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown', 'scdhlm', 'mlmRev', 'lme4',
  'merDeriv'
Packages required but not available: 'lme4', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggdist', 'HLMdiag', 'tidyr'

Packages suggested but not available for checking:
  'lme4', 'testthat', 'mlmRev', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lmerTest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'ggplot2'

Package suggested but not available for checking: ‘pbkrtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'bookdown'
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'spatstat', 'spatstat.geom'

Package suggested but not available for checking: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages suggested but not available for checking:
  'bookdown', 'covr', 'ggplot2', 'patchwork', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'RcppEigen',
  'StanHeaders'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘maxLik’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'bigmemory'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'Rcpp', 'sf', 'spam'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'copula', 'ggplot2', 'lava', 'scales'

Packages suggested but not available for checking:
  'AICcmodavg', 'asht', 'ggh4x', 'ggpubr', 'lme4', 'lmerTest', 'mice',
  'optimx', 'Publish', 'R.rsp', 'reshape2', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'SuperGauss', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'mniw', 'rmarkdown', 'bookdown', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'sf'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Lmoments’

Package suggested but not available for checking: ‘copBasic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘SPEI’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘genefilter’

Packages suggested but not available for checking: 'devtools', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) vcov.Rd:20: Lost braces
    20 | A list of matrix of estimated covariances in the linear ridge regression model for scalar or vector biasing parameter \code{K}{K} is produced. Each list element has row and column names corresponding to the parameter names given by the \code{coef(mod)}. List items are named correspond to values of biasing parameter \eqn{K}{K}.}
       |                                                                                                                               ^
Skipping checking math rendering: package 'V8' unavailable
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lmSubsets.Rcheck/00install.out’ for details.
Packages suggested but not available for checking: 'car', 'dynlm', 'AER'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'origami', 'future', 'progressr', 'SuperLearner'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'ranger', 'twang'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinyjs', 'rgl', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘MatchIt’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'seqinr', 'e1071', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘mcmcse’
Packages required but not available: 'stringr', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'caret', 'echarts4r', 'shinyAce', 'shinyjs', 'readxl', 'golem',
  'htmltools', 'htmlwidgets', 'colourpicker', 'shinydashboard',
  'shiny', 'shinycustomloader', 'shinydashboardPlus'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'OpenStreetMap', 'plyr'

Package suggested but not available for checking: ‘sf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qpdf’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'pkgdown', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lobstr.Rcheck/00install.out’ for details.
Packages required but not available: 'viridis', 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sampleSelection’

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'DALEX', 'ggplot2', 'ingredients'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'oce', 'SynchWave'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readr', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Package required but not available: ‘taxize’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘interp’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) FootballBrain.Rd:15: Lost braces; missing escapes or markup?
    15 |     { } \tab {or \code{FBConcuss}=football player with concussion history} \cr
       |     ^
checkRd: (-1) HappyPlanetIndex.Rd:14: Lost braces; missing escapes or markup?
    14 |     { } \tab {\code{5}=South Asia, \code{6}=East Asia, \code{7}=former Communist countries}\cr
       |     ^
checkRd: (-1) RockandRoll2012.Rd:17: Lost braces; missing escapes or markup?
    17 |     { } \tab {\code{Lifetime Achievement}, \code{Sideman}} \cr
       |     ^
checkRd: (-1) RockandRoll2015.Rd:17: Lost braces; missing escapes or markup?
    17 |     { } \tab {\code{Lifetime Achievement}, \code{Sideman}} \cr
       |     ^
checkRd: (-1) StudentSurvey.Rd:12: Lost braces; missing escapes or markup?
    12 |     \item{\code{Sex}}{code {F}=female or \code{M}=male}
       |                            ^
checkRd: (-1) SynchronizedMovement.Rd:16: Lost braces; missing escapes or markup?
    16 |     { } \tab {for High/Low Synchronization + High/Low Exertion}\cr
       |     ^
checkRd: (-1) TrafficFlow.Rd:25: Escaped LaTeX specials: \#
Packages suggested but not available for checking: 'lubridate', 'mosaic'
Invalid package aliases in Rd file 'Lock5Data-package.Rd':
  ‘Lock5Data-package’
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘expectreg’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'RSpectra', 'bigsnpr', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'cowplot', 'dplyr', 'ensembldb', 'gggrid', 'ggplot2', 'memoise',
  'plotly', 'rtracklayer'

Packages suggested but not available for checking:
  'AnnotationHub', 'EnsDb.Hsapiens.v75', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘igraph’
Argument items with no description in Rd file 'spec.emb.Rd':
  ‘A’
Running examples in ‘loe-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GARI
> ### Title: Graph Adjusted Rand Index
> ### Aliases: GARI
> 
> ### ** Examples
> 
> library(igraph)
Error in library(igraph) : there is no package called ‘igraph’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'metR', 'viridis'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'kableExtra', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘run-all.R’ [0s/1s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'pander', 'dplyr', 'ggplot2', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ROCR', 'caret', 'caretEnsemble', 'dplyr', 'ggplot2', 'gbm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rgl’

Package which this enhances but not available for checking: ‘logcondens’
Note: skipping ‘LogConcDEAD.Rnw’ due to unavailable dependencies: 'rgl'
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘logcondens’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'pander', 'slackr', 'testthat', 'covr', 'rmarkdown', 'devtools',
  'roxygen2', 'shiny', 'botor'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Running ‘run_tests.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/run_tests.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'lubridate', 'readxl'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rARPACK', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'fda', 'pROC', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ggplot2', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘logitnorm.Rmd’ using knitr

Quitting from lines 7-30 [setup] (logitnorm.Rmd)
Error: processing vignette 'logitnorm.Rmd' failed with diagnostics:
could not find function "exit"
--- failed re-building ‘logitnorm.Rmd’

SUMMARY: processing the following file failed:
  ‘logitnorm.Rmd’

Error: Vignette re-building failed.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘nloptr’

Packages suggested but not available for checking:
  'apollo', 'broom', 'dplyr', 'fastDummies', 'ggplot2', 'ggrepel',
  'gmnl', 'gtsummary', 'kableExtra', 'mixl', 'mlogit', 'rmarkdown',
  'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'survey', 'rmarkdown'
Running examples in ‘logmult-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: svygnm
> ### Title: Fitting Generalized Nonlinear Models With Complex Survey Data
> ### Aliases: svygnm svygnm.svyrep.design
> ### Keywords: models nonlinear
> 
> ### ** Examples
> 
>   library(survey)
Error in library(survey) : there is no package called ‘survey’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr', 'ggplot2', 'tidyr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # workaround for error LC_CTYPE failed, using "C" but does not work
  > #https://github.com/r-lib/testthat/issues/86
  > #Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'shiny', 'plumber', 'testthat', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'tidylog', 'dplyr', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'tidyr', 'stringr', 'miniUI', 'shiny', 'stringi', 'waiter',
  'digest'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'pkgdown', 'Tplyr', 'haven',
  'lintr', 'xml2', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘scales’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'reshape2', 'intergraph'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ergm', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'robust'

Packages suggested but not available for checking:
  'rmarkdown', 'latex2exp', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'FNN', 'reshape2', 'transport', 'RANN', 'ff', 'dbscan',
  'EBImage', 'rhdf5', 'alphashape3d'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plotly'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Argument items with no description in Rd file 'norpt.Rd':
  ‘alist’
Packages required but not available:
  'lme4', 'reshape2', 'glmmTMB', 'bestNormalize', 'ggplot2', 'stringr',
  'dplyr', 'car', 'rstatix', 'tidyr', 'patchwork'

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'AICcmodavg', 'missForest', 'R2jags', 'rjags'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'tidyr', 'scales', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘latex2exp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'fdapace', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'partitions', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘StatMatch’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'tidyr', 'ggplot2', 'ggalluvial',
  'FactoMineR', 'factoextra', 'lme4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'dplyr', 'tidyr', 'fs', 'fdapace', 'grf', 'lme4',
  'mvnfast', 'plyr', 'readr', 'refund', 'fda', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'TDAstats', 'RANN', 'ggplot2', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) SAheart.Rd:96: Lost braces
    96 |   J.E. Rossouw, J.P.D. Plessis, A.J.S. Benad\'{e}, P.C.J. Jordaan, 
       |                                               ^
checkRd: (-1) SAheart.Rd:97: Lost braces
    97 |   J.P. Kotz\'{e}, P.L. Jooste, and J.J. Ferreira (1983)
       |              ^
Packages required but not available:
  'ggplot2', 'ggmulti', 'scales', 'patchwork'

Packages suggested but not available for checking:
  'GGally', 'tidyr', 'dplyr', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rworldmap', 'rgl', 'RDRToolbox', 'kernlab', 'scales', 'testthat',
  'rmarkdown', 'covr'
checkRd: (-1) l_binCut.Rd:30: Lost braces
    30 | when 'code{labels = FALSE}, the default \code{active} is  \code{-1}; and when \code{labels} is a vector of length equal
       |           ^
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'shiny', 'loon.ggplot', 'colourpicker'

Packages suggested but not available for checking:
  'dplyr', 'ggmulti', 'testthat', 'rmarkdown', 'tidyverse', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tourr', 'loon.ggplot'

Packages suggested but not available for checking:
  'tidyverse', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Auto-generated content requiring editing in Rd file 'LoopAnalyst-package.Rd':
  \details: ‘...the package, including the most important ~~ ~~ functions ~~’
Found the following files/directories:
  ‘Model_1.cm’ ‘dambacher.dot’ ‘levins.dot’
Package required but not available: ‘igraph’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'bayesplot', 'brms', 'ggplot2', 'posterior', 'rmarkdown', 'rstan',
  'rstanarm', 'rstantools', 'spdep', 'testthat'
Documented arguments not in \usage in Rd file 'importance_sampling.array.Rd':
  ‘is_method’

Documented arguments not in \usage in Rd file 'importance_sampling.default.Rd':
  ‘is_method’

Documented arguments not in \usage in Rd file 'importance_sampling.matrix.Rd':
  ‘is_method’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(loo)
  This is loo version 2.6.0
  - Online documentation and vignettes at mc-stan.org/loo
  - As of v2.0.0 loo defaults to 1 core but we recommend using as many as possible. Use the 'cores' argument or set options(mc.cores = NUM_CORES) for an entire session. 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'rstan', 'bridgesampling'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Errors in running code in vignettes:
when running code in ‘LoRaD-gtrig-vignette.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘bridge-sampling.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘lorad-k80-vignette.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘LoRaD-gtrig-vignette.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘bridge-sampling.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘lorad-k80-vignette.Rmd’ using ‘UTF-8’... failed to complete the test
Packages required but not available: 'mirt', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘scio’
Malformed Description field: should contain one or more complete sentences.
Package required but not available: ‘htmltools’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) gyr.Rd:35: Lost braces
    35 |   on \sQuote{Deriving relativistic momentum and energy: {I}{I}.
       |                                                            ^
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dineq’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'GA', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rARPACK’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shapes', 'e1071', 'pcaMethods', 'miscTools', 'rgl', 'geomorph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Argument items with no description in Rd file 'LotkasXX.Rd':
  ‘Table’
Argument items with no description in Rd file 'LotkasXY.Rd':
  ‘Table’
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat) # nolint
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RSQLite'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RSQLite'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘locits’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘multimode’
Argument items with no description in Rd file 'followx.Rd':
  ‘Xi’ ‘x0’ ‘h’ ‘t0’ ‘iter’ ‘way’ ‘weights’ ‘pen’ ‘phi’
  ‘lasteigenvector’ ‘rho0’ ‘boundary’ ‘convergence.at’ ‘cross’
Running examples in ‘LPCM-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ms.rep
> ### Title: Mean shift procedures.
> ### Aliases: ms.rep meanshift ms.rep.min
> ### Keywords: multivariate
> 
> ### ** Examples
> 
> data(stamps, package="multimode")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘multimode’
Calls: data -> find.package
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rglpk’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'virtualspecies', 'terra'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'PMA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'scales', 'Rsymphony'
Running examples in ‘lphom-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: error_lphom
> ### Title: Global error of a lphom estimated table
> ### Aliases: error_lphom
> 
> ### ** Examples
> 
> mt.lphom <- lphom(France2017P[, 1:8], France2017P[, 9:12], "raw", NULL, FALSE)
*********************WARNING*********************
You are in a "raw" scenario.
The sums (by row) of origin and destination data differ. It is, for at least a spatial unit, the total number of electors in both elections is not the same. 

 To guarantee the matching: A new category of census entries (NET_ENTRIES) is included in the origin election and a new category of census exits (NET_EXITS) is also included in the destination election.

 %NET_ENTRIES=0.0281014834498004%
 %NET_EXITS=0.026247806955692%

 If NET_ENTRIES and/or NET_EXITS are really small, less than 1% in all units, their results will not be displayed in VTM, they are included in VTM.complete

 See paper "A model to estimate voter transitions from aggregated data. Application to 2017 French presidential elections" for details. 
*************************************************
> set.seed(253443)
> example <- error_lphom(mt.lphom, upper.alfa = 0.10, show.plot = FALSE, num.d = 5, B = 8)
Error: Package ggplot2 needed for this function to work. Please install it.
Execution halted
Packages required but not available:
  'dplyr', 'ggplot2', 'plm', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'readxl', 'ggpubr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'apcluster', 'igraph', 'LPGraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rglpk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'reshape2', 'ggplot2', 'glmnet', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'LPGraph', 'LPBkg', 'nloptr', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'pkgdown', 'ggplot2', 'devtools'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'spatstat.geom', 'MomTrunc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DoseFinding’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'reshape'
Running examples in ‘lrd-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: crp_multiple
> ### Title: Conditional Response Probability for Multiple Lists
> ### Aliases: crp_multiple
> ### Keywords: correct free position proportion recall scoring serial
> 
> ### ** Examples
> 
> 
> data("multi_data")
> data("multi_answers")
> 
> DF_long <- arrange_data(data = multi_data,
+                        responses = "Response",
+                        sep = " ",
+                        id = "Sub.ID",
+                        repeated = "List.Number")
> 
> library(reshape)
Error in library(reshape) : there is no package called ‘reshape’
Execution halted
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'covr', 'testthat'
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'EnvStats', 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘spdep’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'Hmisc'

Packages suggested but not available for checking:
  'BIFIEsurvey', 'TAM', 'miceadds', 'sirt', 'mice', 'difR', 'kerdiest',
  'glmnet', 'mirt', 'car', 'mitml', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘tm’
checkRd: (-1) specialchars.Rd:6: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'plyr', 'reshape2', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘TSdist’

Package suggested but not available for checking: ‘LSDsensitivity’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'LSDinterface', 'kSamples', 'sensitivity', 'car', 'rgenoud'

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'MCMCpack', 'ggplot2', 'dplyr', 'pROC', 'spatstat',
  'spatstat.geom', 'spatstat.random', 'plotly', 'fpc', 'kernlab',
  'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppEigen'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'dplyr', 'scales', 'NFCP'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘seqinr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'scales', 'ggplot2', 'broom'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'raster', 'rasterVis', 'latticeExtra'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales', 'patchwork'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'quanteda', 'quanteda.textstats', 'stringi', 'digest', 'RSpectra',
  'rsparse', 'proxyC', 'ggplot2', 'ggrepel', 'reshape2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rTensor2', 'gsignal'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'readr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'janitor', 'usethis', 'metajam', 'tidyverse', 'broom',
  'sf', 'ggmap', 'leaflet', 'lubridate', 'patchwork', 'tsibble',
  'feasts', 'gt'
Packages required but not available: 'dplyr', 'ggplot2', 'magick', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'SuperLearner', 'testthat', 'tmle', 'rmarkdown', 'arm'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) k.Rd:27: Lost braces
    27 |  code{\link{ACSPlan-class}}, 
       |      ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ipred', 'prodlim'

Packages suggested but not available for checking:
  'randomForestSRC', 'LTRCtrees'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘icenReg’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) DLSimulate.Rd:38: Lost braces
    38 | code{\link{arima.sim}} 
       |     ^
Skipping checking math rendering: package 'V8' unavailable
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ltsk.Rcheck/00install.out’ for details.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rrcov', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘timechange’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rpostgis', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'broom', 'dplyr', 'lme4', 'rjags', 'rmarkdown', 'sommer', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'networkD3', 'glmnet'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'ROCR', 'rasterVis'

Packages suggested but not available for checking: 'caret', 'Hmisc', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'interp', 'lamW', 'readxl', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'spelling', 'plotly', 'rmarkdown', 'rjags', 'pander', 'testthat',
  'devtools', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'sf', 'covr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Documented arguments not in \usage in Rd file 'setlogdata.Rd':
  ‘logdata’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Found the following files/directories:
  ‘test’
Packages required but not available: 'torch', 'fs'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'vdiffr', 'ggplot2', 'dplyr',
  'torchvision', 'tfevents', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lhs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cowplot', 'dplyr', 'ggplot2', 'rsample'

Packages suggested but not available for checking:
  'covr', 'devtools', 'fs', 'lme4', 'lmerTest', 'rmarkdown',
  'testthat', 'usethis', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'OpenMx', 'qgraph', 'dplyr', 'semPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘depth’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘test-all.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'doFuture', 'future', 'progressr'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'units', 'sf'

Packages suggested but not available for checking:
  'covr', 'geosphere', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr', 'gWQS', 'gamm4'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'geosphere', 'caTools', 'ggplot2', 'e1071', 'caret'

Packages suggested but not available for checking:
  'adehabitatLT', 'moveHMM', 'DiagrammeR', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mpoly', 'stringr', 'memoise', 'gmp', 'usethis', 'Rcpp'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'InterSIM'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringi', 'lubridate'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'GenomicAlignments', 'GenomicFeatures', 'Rsamtools'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TestDesign', 'readxl'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘icenReg’

Packages suggested but not available for checking:
  'mixtools', 'rmarkdown', 'ks', 'multimode'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'optimx', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dials', 'ggplot2', 'kernlab', 'recipes', 'rsample'

Packages suggested but not available for checking:
  'adabag', 'BART', 'bartMachine', 'C50', 'censored', 'e1071', 'gbm',
  'glmnet', 'Hmisc', 'kableExtra', 'kknn', 'ParBayesianOptimization',
  'parsnip', 'randomForestSRC', 'ranger', 'rBayesianOptimization',
  'rmarkdown', 'rms', 'testthat', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'etl', 'dplyr', 'lubridate', 'phenocamr', 'readr', 'rvest', 'sf',
  'stringr', 'xml2'

Packages suggested but not available for checking:
  'ggplot2', 'dbplyr', 'RSQLite', 'broom', 'leaflet', 'rmarkdown',
  'clifro', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BMA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'WGCNA', 'tidyr', 'Hmisc', 'igraph', 'pROC', 'ggplot2',
  'stringr', 'caret'

Packages suggested but not available for checking:
  'ptw', 'e1071', 'kernlab', 'ranger', 'infotheo', 'philentropy',
  'gprofiler2', 'minet', 'orthogene', 'protti', 'rmarkdown',
  'BiocStyle'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'devtools', 'raster', 'sf', 'strex', 'terra'

Package suggested but not available for checking: ‘rnaturalearthhires’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'openxlsx', 'lubridate', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'igraph', 'tidyr', 'reshape2', 'dplyr', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mediation’

Package suggested but not available for checking: ‘SuppDists’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'textmineR', 'tidytext', 'tidyr', 'udpipe', 'shiny', 'shinythemes',
  'tm', 'dplyr', 'hwordcloud', 'stringr', 'stringi', 'topicmodels',
  'igraph', 'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'textmineR', 'tidytext', 'stringi', 'tidyr', 'udpipe', 'shiny',
  'shinythemes', 'tm', 'dplyr', 'hwordcloud', 'stringr', 'topicmodels'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) mada-data.Rd:45: Lost braces
    45 | Kriston, L., H{\"o}elzel, L., Weiser, A., Berner, M., & Haerter, M. (2008).\dQuote{ Meta-analysis: Are 3
       |               ^
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'
Package required but not available: ‘torch’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages suggested but not available for checking:
  'testthat', 'dplyr', 'tidyr', 'lubridate'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # /usr/bin/r
  > #
  > # Copyright 2015-2015 Steven E. Pav. All Rights Reserved.
  > # Author: Steven E. Pav
  > #
  > # This file is part of madness.
  > #
  > # madness is free software: you can redistribute it and/or modify
  > # it under the terms of the GNU Lesser General Public License as published by
  > # the Free Software Foundation, either version 3 of the License, or
  > # (at your option) any later version.
  > #
  > # madness is distributed in the hope that it will be useful,
  > # but WITHOUT ANY WARRANTY; without even the implied warranty of
  > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > # GNU Lesser General Public License for more details.
  > #
  > # You should have received a copy of the GNU Lesser General Public License
  > # along with madness.  If not, see <http://www.gnu.org/licenses/>.
  > #
  > # Created: 2015.11.28
  > # Copyright: Steven E. Pav, 2015
  > # Author: Steven E. Pav <shabbychef@gmail.com>
  > # Comments: Steven E. Pav
  > 
  > # because Hadley says it should be like this.
  > # see https://github.com/hadley/devtools/wiki/Testing
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introducing_madness.Rnw’ using knitr

Quitting from lines 1148-1202 [preamble] (introducing_madness.Rnw)
Error: processing vignette 'introducing_madness.Rnw' failed with diagnostics:
there is no package called 'dplyr'
--- failed re-building ‘introducing_madness.Rnw’

SUMMARY: processing the following file failed:
  ‘introducing_madness.Rnw’

Error: Vignette re-building failed.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'rstan', 'Rcpp', 'rstantools', 'RcppEigen', 'StanHeaders',
  'RcppParallel'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'igraph', 'pkgload', 'stringi'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'terra', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Running examples in ‘MAd-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotcon
> ### Title: Meta Regression Scatterplot
> ### Aliases: plotcon
> ### Keywords: aplot
> 
> ### ** Examples
> 
> # SAMPLE DATA
> MA2 <-read.table(textConnection("
+ id       es1       var1 n.1 n.2 mod1 mod2
+ 1   1 0.5695938 0.04906967  26  30    a   20
+ 2   2 0.4123667 0.04362541  28  34    b   30
+ 3   3 0.4084333 0.04458363  34  28    a   25
+ 4   4 0.5014756 0.04186354  37  29    b   35
+ 5   5 0.5540745 0.04339382  31  32    b   40
+ 6   1 0.5695938 0.04906967  26  30    a   20
+ 7   2 0.4123667 0.04362541  28  34    b   30
+ 8   3 0.4084333 0.04458363  34  28    a   25
+ 9   4 0.5014756 0.04186354  37  29    b   35
+ 10  5 0.5540745 0.04339382  31  32    b   40"))
> 
> 
> # EXAMPLE
> plotcon(es1, var1, mod2, data=MA2, method= "fixed", modname="NULL",title="NULL")
Error: Package "ggplot2" must be installed to use this function.
Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'stringr', 'ggplot2', 'tidytext', 'lubridate', 'janitor',
  'haven', 'bookdown', 'DT', 'readr', 'tidyr', 'fs', 'fabR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rgl', 'geometry', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'lpjmlkit', 'quitte', 'raster', 'rmarkdown', 'terra',
  'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'GMMAT', 'CompQuadForm', 'RcppArmadillo'

Packages suggested but not available for checking:
  'SeqArray', 'SeqVarTools', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'celestial', 'RANN'

Packages suggested but not available for checking: 'imager', 'fst'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘magick’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'av', 'spelling', 'rmarkdown', 'pdftools', 'ggplot2', 'IRdisplay',
  'tesseract'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'roptim'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'ggplot2', 'plyr', 'Rcpp', 'tidyr'

Packages suggested but not available for checking:
  'gganimate', 'plotly', 'rmarkdown', 'testthat', 'transformr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘crul’

Packages suggested but not available for checking:
  'dittoSeq', 'BiocStyle', 'vcr', 'webmockr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'dplyr', 'lme4', 'plyr', 'seqinr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'tidyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'weights'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages required but not available:
  'gmailr', 'googledrive', 'rmarkdown', 'fs', 'shiny', 'miniUI'

Packages suggested but not available for checking:
  'spelling', 'covr', 'testthat', 'mockery', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'golem', 'htmltools', 'htmlwidgets', 'openxlsx',
  'pkgload', 'sf', 'shiny', 'tidyr', 'tmap', 'tmaptools'

Packages suggested but not available for checking:
  'BiocCheck', 'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'miscTools', 'rrcov', 'pcaPP', 'ggplot2', 'GGally',
  'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'readr', 'rmarkdown'
Packages required but not available:
  'ggplot2', 'shiny', 'shinyjs', 'shinyBS', 'visNetwork'

Packages suggested but not available for checking:
  'rstan', 'INLA', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'terra', 'prismatic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nomnoml', 'roxygen2'

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown', 'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) makeProject.Rd:34: Lost braces
    34 | email{noahsilverman@ucla.edu}
       |      ^
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘e1071’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidygraph', 'Rcpp', 'RcppArmadillo', 'igraph'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggraph', 'Rmpfr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'xml2', 'dplyr', 'tidyr', 'sf', 'terra', 'tidyterra',
  'ows4R', 'future.apply', 'lubridate', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'rdhs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'readMzXmlData'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Errors in running code in vignettes:
when running code in ‘mallet.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘mallet.Rmd’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'future', 'future.apply'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'readr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reshape2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'oro.nifti', 'oro.dicom', 'imager', 'caret'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'MCMCpack', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) MangroveTree.Rd:37: Lost braces
    37 |       An object of class \\code{\link[Mangrove]{MangrovePed}}
       |                                ^
Packages required but not available: 'plotly', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'ggplot2', 'ggrepel'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tm', 'htmlwidgets', 'DT', 'htmltools', 'readr', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'R.rsp', 'haven', 'readxl', 'devtools'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'miniUI', 'htmltools', 'htmlwidgets', 'shinyjs'

Packages suggested but not available for checking:
  'dygraphs', 'leaflet', 'plotly', 'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘scales’

Packages suggested but not available for checking:
  'gplots', 'DescTools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking:
  'rmarkdown', 'tidyr', 'ggplot2', 'GFD', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'biomaRt', 'caret', 'dplyr', 'ggplot2', 'keras', 'mlr3', 'reshape2',
  'scutr', 'stringr', 'tidyr', 'mlr3tuning', 'paradox', 'ggcorrplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/manta.Rcheck/00install.out’ for details.
Packages required but not available:
  'dplyr', 'messydates', 'stringr', 'usethis', 'ggplot2', 'janitor',
  'tidyr', 'plyr'

Packages suggested but not available for checking:
  'testthat', 'anytime', 'mice', 'haven', 'readxl', 'readr',
  'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'e1071', 'dplyr', 'ggplot2', 'lme4'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'igraph'

Packages suggested but not available for checking:
  'rmarkdown', 'semPlot', 'semptools', 'Amelia', 'mice', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'manymome', 'flextable'

Packages suggested but not available for checking: 'rmarkdown', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggraph', 'igraph', 'tidygraph'

Packages suggested but not available for checking:
  'concaveman', 'gganimate', 'ggforce', 'graphlayouts', 'learnr',
  'migraph', 'minMSE', 'patchwork', 'readxl', 'rmarkdown', 'roxygen2',
  'RSiena', 'testthat', 'xml2', 'future', 'furrr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reticulate', 'lhs', 'stringr', 'e1071'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RSpectra', 'Rtsne', 'RANN', 'labdsv', 'shapes',
  'fastcluster', 'dbscan', 'RcppArmadillo', 'RcppDist'

Packages suggested but not available for checking:
  'covr', 'igraph', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'smooth'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'mrgsolve', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'lubridate', 'minqa', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'dplyr', 'tidyr', 'aws.s3', 'stringi', 'slippymath',
  'protolite', 'geojsonsf', 'magick', 'leaflet', 'units', 'raster'

Packages suggested but not available for checking:
  'ggspatial', 'mapdeck', 'tigris', 'tidycensus', 'tmap', 'mapboxer',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmlwidgets', 'htmltools', 'geojsonsf'

Packages suggested but not available for checking: 'rmarkdown', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking: 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'colourvalues', 'googlePolylines', 'geojsonsf', 'htmlwidgets',
  'jsonify', 'Rcpp', 'shiny', 'sfheaders', 'geometries', 'interleave',
  'spatialwidget'

Packages suggested but not available for checking:
  'covr', 'googleway', 'rmarkdown', 'spatialwidget', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'htmltools', 'htmlwidgets', 'leafem', 'leaflet',
  'leaflet.extras', 'leafpm', 'mapview', 'miniUI', 'raster', 'scales',
  'sf', 'shiny'

Package which this enhances but not available for checking: ‘geojsonio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'deformula', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'PBSmapping'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'raster', 'stringr', 'testthat'

Package suggested but not available for checking: ‘geosphere’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'Rcpp'

Packages suggested but not available for checking:
  'ggplot2', 'latticeExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'isoband'

Packages suggested but not available for checking: 'covr', 'mapsf', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'CompQuadForm', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘covr’
Packages required but not available:
  'dplyr', 'furrr', 'progressr', 'rvest', 'sf', 'stringr', 'terra',
  'tidyr'

Packages suggested but not available for checking:
  'exactextractr', 'future', 'rmarkdown', 'SPEI', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tmap', 'cartography', 'ggplot2', 'sf', 'dplyr', 'leaflet',
  'tmaptools', 'htmltools', 'leafpop', 'leafsync', 'mapview',
  'geojsonio', 'stringr', 's2', 'stringi'

Packages suggested but not available for checking:
  'DiagrammeR', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'RcppParallel', 'fields', 'ggpubr', 'ggsci', 'dplyr',
  'reshape2', 'ggplot2', 'smacof', 'princurve', 'dendextend', 'vcfR',
  'plotly'

Packages suggested but not available for checking:
  'testthat', 'updog', 'polymapR', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘memoise’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available: 'xml2', 'sf', 'stars'

Packages suggested but not available for checking:
  'rmarkdown', 'leaflet', 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fs', 'magick', 'memoise', 'pdftools', 'raster', 'Rcpp', 'RNiftyReg',
  'sf', 'slippymath'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'gibble', 'lwgeom', 'mapview', 'mmand',
  'osmdata', 'polyclip', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'sf', 'stringi'
Running examples in ‘mapsFinland-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mkMapFinland
> ### Title: Make map of Finland
> ### Aliases: mkMapFinland
> 
> ### ** Examples
> 
> hv.alueet<-mkMapFinland(url="https://tinyurl.com/hvalueet2022")
trying URL 'https://tinyurl.com/hvalueet2022'
downloaded 1.1 MB

Error in loadNamespace(x) : there is no package called ‘sf’
Calls: mkMapFinland ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available: 'classInt', 's2', 'sf'

Packages suggested but not available for checking:
  'terra', 'lwgeom', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'giscoR', 'sf'

Packages suggested but not available for checking:
  'ggplot2', 'leaflet', 'rmarkdown', 'slippymath', 'terra', 'testthat',
  'tidyterra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rnaturalearth’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'terra', 'gstat'

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'survey', 'Hmisc', 'classInt', 'sf', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'digest', 'terra', 'slippymath'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'htmltools', 'htmlwidgets', 'leafem', 'leaflet', 'leafpop', 'raster',
  'satellite', 'scales', 'servr', 'sf'

Packages suggested but not available for checking:
  'covr', 'later', 'leaflet.extras2', 'leafsync', 'lwgeom', 'mapdeck',
  'plainview', 'rmarkdown', 's2', 'stars', 'webshot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'grf', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2'

Packages suggested but not available for checking:
  'lintr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘seacarb’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readr', 'dplyr', 'usethis', 'devtools', 'lubridate', 'rvest',
  'scholar', 'stringi', 'stringr', 'tidytext', 'tidyr', 'tidyverse',
  'treemapify', 'widyr', 'igraph'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'AER', 'Amelia', 'afex', 'bife', 'blme', 'brms', 'brmsmargins',
  'broom', 'car', 'collapse', 'conflicted', 'covr', 'crch', 'DALEXtra',
  'dbarts', 'distributional', 'dplyr', 'equivalence', 'estimatr',
  'fixest', 'fmeffects', 'future', 'geepack', 'ggdag', 'ggdist',
  'ggokabeito', 'ggplot2', 'ggrepel', 'glmmTMB', 'haven', 'ivreg',
  'kableExtra', 'lme4', 'lmerTest', 'logistf', 'MatchIt', 'MCMCglmm',
  'missRanger', 'mhurdle', 'mice', 'miceadds', 'mlogit', 'mlr3verse',
  'modelsummary', 'optmatch', 'parsnip', 'patchwork', 'pkgdown',
  'phylolm', 'plm', 'posterior', 'Rchoice', 'rcmdcheck', 'rmarkdown',
  'rms', 'robust', 'robustlmm', 'rsample', 'rstanarm', 'rstantools',
  'sampleSelection', 'spelling', 'survey', 'svglite', 'systemfonts',
  'tidymodels', 'tidyr', 'tidyverse', 'tinysnapshot', 'truncreg',
  'workflows', 'xgboost', 'testthat', 'altdoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Packages required but not available: 'furniture', 'stringr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'lme4'

Packages which this enhances but not available for checking:
  'AER', 'survey'
Running ‘testthat-margins.R’ [0s/0s]
Running the tests in ‘tests/testthat-margins.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Package vignette with \VignetteEngine{} not specifying an engine package:
  ‘TechnicalDetails.Rnw’
Engines should be specified as \VignetteEngine{PKG::ENG}.
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) residuals.rsm.Rd:74: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) marima.Rd:28: Lost braces; missing escapes or markup?
    28 | ( if(is.ts(DATA)) { DATA <- as.matrix(data.frame(DATA)) } and a message
       |                   ^
checkRd: (-1) marima.Rd:223: Escaped LaTeX specials: \&
Packages required but not available: 'shiny', 'shinyAce'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Unavailable namespace imported from by a ':::' call: ‘rmarkdown’
  See the note in ?`:::` about the use of this operator.
Packages required but not available:
  'lme4', 'Rcpp', 'TMB', 'optimx', 'kableExtra', 'bookdown'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RSpectra', 'RcppEigen'

Packages suggested but not available for checking:
  'rmarkdown', 'prettydoc', 'scales'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'reshape2', 'CausalImpact', 'tidyr', 'bsts',
  'scales', 'Boom'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'RcppGSL', 'RcppParallel'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘testthat’

Packages suggested but not available for checking:
  'covr', 'httptest', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ape', 'phangorn', 'geiger', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'DiagrammeR', 'rmarkdown', 'ctmcd', 'bookdown', 'rticles'

Package which this enhances but not available for checking: ‘etm’

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'bookdown', 'rticles'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'metR'

Packages suggested but not available for checking: 'kableExtra', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'Rcpp', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'devtools', 'testthat'
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Copyright 2014-2020 Steven E. Pav. All Rights Reserved.
  > # Author: Steven E. Pav
  > 
  > # This file is part of MarkowitzR.
  > #
  > # MarkowitzR is free software: you can redistribute it and/or modify
  > # it under the terms of the GNU Lesser General Public License as published by
  > # the Free Software Foundation, either version 3 of the License, or
  > # (at your option) any later version.
  > #
  > # MarkowitzR is distributed in the hope that it will be useful,
  > # but WITHOUT ANY WARRANTY; without even the implied warranty of
  > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > # GNU Lesser General Public License for more details.
  > #
  > # You should have received a copy of the GNU Lesser General Public License
  > # along with MarkowitzR.  If not, see <http://www.gnu.org/licenses/>.
  > 
  > # env var:
  > # nb: 
  > # see also:
  > # todo:
  > # changelog: 
  > #
  > # Created: 2014.05.19
  > # Copyright: Steven E. Pav, 2014-2020
  > # Author: Steven E. Pav
  > # Comments: Steven E. Pav
  > 
  > # because Hadley says it should be like this.
  > # see https://github.com/hadley/devtools/wiki/Testing
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘fs’

Packages suggested but not available for checking:
  'bib2df', 'covr', 'dplyr', 'haven', 'rcmdcheck', 'stringi',
  'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RSQLite', 'gdistance', 'geosphere', 'raster', 'reshape2', 'ggplot2'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'devtools', 'roxygen2', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'viridis', 'patchwork'
checkRd: (-1) marqLevAlg-package.Rd:14: Lost braces; missing escapes or markup?
    14 | (GH^{-1}G).
       |     ^
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Package required but not available: ‘qpdf’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'forecast', 'ggplot2', 'Hmisc', 'marssTMB'
Objects in \usage without \alias in Rd file 'utility_functions.Rd':
  ‘fully.spec.x’ ‘marssMODEL.to.list’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘e1071’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr', 'scales'

Packages suggested but not available for checking:
  'AnnotationDbi', 'BSgenome', 'BSgenome.Hsapiens.NCBI.GRCh38',
  'clusterProfiler', 'factoextra', 'FactoMineR', 'ggnewscale',
  'ggrepel', 'kableExtra', 'kSamples', 'MAST', 'org.Hs.eg.db',
  'org.Mm.eg.db', 'pheatmap', 'reshape2', 'rmarkdown', 'stringr',
  'textclean', 'twosamples', 'wiggleplotr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'BiocStyle'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'devtools', 'forestinventory', 'pkgload', 'rmarkdown', 'R.rsp',
  'sae', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Errors in running code in vignettes:
when running code in ‘maSAE.Rnw’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘maSAE.Rnw’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'glmnet', 'survey', 'dplyr', 'tidyr', 'rpms', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ashr', 'plyr', 'Rcpp', 'RcppArmadillo', 'RcppGSL'

Packages suggested but not available for checking:
  'testthat', 'kableExtra', 'rmarkdown', 'flashier', 'ebnm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'e1071', 'lubridate', 'raster'

Packages suggested but not available for checking:
  'dismo', 'testthat', 'rmarkdown', 'wallace'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'rmarkdown', 'patchwork', 'dplyr', 'ggplot2'
checkRd: (-1) hr_levels.Rd:9-12: Lost braces
     9 | kernelBiweight <- function(x, mean = 0, sd = 1) {
       |                                                 ^
checkRd: (-1) hr_levels.Rd:33-36: Lost braces
    33 | kernelCosine <- function(x, mean = 0, sd = 1) {
       |                                               ^
checkRd: (-1) hr_levels.Rd:41-44: Lost braces
    41 | kernelEpanechnikov <- function(x, mean = 0, sd = 1) {
       |                                                     ^
checkRd: (-1) hr_levels.Rd:58-61: Lost braces
    58 | kernelOptCosine <- function(x, mean = 0, sd = 1) {
       |                                                  ^
checkRd: (-1) hr_levels.Rd:65-68: Lost braces
    65 | kernelRectangular <- function(x, mean = 0, sd = 1) {
       |                                                    ^
checkRd: (-1) hr_levels.Rd:72-75: Lost braces
    72 | kernelSquaredCosine <- function(x, mean = 0, sd = 1) {
       |                                                      ^
checkRd: (-1) hr_levels.Rd:79-82: Lost braces
    79 | kernelTriangular <- function(x, mean = 0, sd = 1) {
       |                                                   ^
checkRd: (-1) hr_levels.Rd:86-89: Lost braces
    86 | kernelTricube <- function(x, mean = 0, sd = 1) {
       |                                                ^
checkRd: (-1) hr_levels.Rd:93-96: Lost braces
    93 | kernelTriweight <- function(x, mean = 0, sd = 1) {
       |                                                  ^
checkRd: (-1) hr_levels.Rd:100-103: Lost braces
   100 | kernelUniform <- function(x, mean = 0, sd = 1) {
       |                                                ^
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'formattable', 'msigdbr', 'igraph', 'visNetwork'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) CF2004.Rd:8: Lost braces; missing escapes or markup?
     8 |   \item{X2}{an optional second variable with same length as \code{X}, should the equation be multiple (see Details) {in mm}}
       |                                                                                                                     ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'flextable', 'ggplot2', 'ggrepel', 'ggspatial', 'lubridate',
  'prettymapr', 'raster', 'rmarkdown', 'readxl', 'sf', 'tidyr', 'units'

Packages suggested but not available for checking:
  'covr', 'patchwork', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RANN', 'repmis', 'stringi', 'stringr', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘readr’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'mvnfast', 'rcbalance', 'Rcpp'

Packages suggested but not available for checking:
  'dplyr', 'RItools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘gurobi’
checkRd: (-1) Rand.index.Rd:22: Lost braces; missing escapes or markup?
    22 | The two vectors \code{x} and \code{y} must have equal length. Given a set \eqn{S} and two partitions \eqn{X} and \eqn{Y} of \eqn{S}, the Rand index is the proportion of pairs of elements in \eqn{S} (out of all pairs) that are either concordant in both \eqn{X} and \eqn{Y} (i.e., they belong to the same member of \eqn{X} and to the same member of \eqn{Y}) or discordant (i.e., not concordant) in both \eqn{X} and {Y}.  
       |                                                                                                                                                                                                                                                                                                                                                                                                                              ^
checkRd: (-1) predict.matchFeat.Rd:21: Lost braces
    21 | The function \code{predict.matchFeat} finds the best matching for new feature vectors relative to an existing set of cluster/class centers. If code{object} results from a call to \code{\link{match.gaussmix}}, the same function is used for prediction (with fixed mean vectors and covariance matrices). In other cases, the function \code{\link{match.template}} is used for prediction. 
       |                                                                                                                                                    ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'partitions', 'RcppArmadillo'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rgenoud', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Matching.Rcheck/00install.out’ for details.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'optmatch', 'Matching', 'rgenoud', 'quickmatch', 'CBPS', 'dbarts',
  'glmnet', 'gbm', 'cobalt', 'marginaleffects', 'highs', 'Rglpk',
  'Rsymphony', 'gurobi', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'Matching'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'rcbsubset', 'plyr', 'weights'

Packages suggested but not available for checking:
  'optmatch', 'testthat', 'rrelaxiv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Match.Rd:90: Lost braces; missing escapes or markup?
    90 | expression in braces. For example, the condition "{[ab]*}" is equivalent
       |                                                   ^
Packages required but not available:
  'MatchIt', 'mice', 'survey', 'WeightIt'

Packages suggested but not available for checking:
  'Amelia', 'cobalt', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'FNN', 'Rcpp'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'downloader', 'imager'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘js’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘rolog’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘magick’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘styler’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) size_t-class.Rd:6: Escaped LaTeX specials: \_
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rgl', 'car'

Packages suggested but not available for checking: 'rmarkdown', 'webshot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'dplyr', 'tidyr', 'plotly', 'DT', 'shinydashboard',
  'shinyWidgets', 'forecast', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘bigmemory’
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'reshape2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DescTools’

Packages suggested but not available for checking:
  'devtools', 'rmarkdown', 'testthat', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RSpectra', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'reshape2', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Matrix_eQTL_main.Rd:31: Lost braces; missing escapes or markup?
    31 |     {genepos} in the call of \code{Matrix_eQTL_main} function.
       |     ^
checkRd: (-1) Matrix_eQTL_main.Rd:35: Lost braces; missing escapes or markup?
    35 |     the data frames \code{snpspos} and {genepos}.
       |                                        ^