Running examples in ‘agridat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: carmer.density
> ### Title: Nonlinear maize yield-density model
> ### Aliases: carmer.density
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> library(agridat)
> data(carmer.density)
> dat <- carmer.density
> dat$gen <- factor(dat$gen, levels=c('Hy2x0h7','WF9xC103','R61x187-2',
+                              'WF9x38-11','WF9xB14','C103xB14',
+                              '0h43xB37','WF9xH60'))
> 
> # Separate analysis for each hybrid
> # Model: y = x * a * k^x.  Table 1 of Carmer and Jackobs.
> out <- data.frame(a=rep(NA,8), k=NA)
> preds <- NULL
> rownames(out) <- levels(dat$gen)
> newdat <- data.frame(pop=seq(2,8,by=.1))
> for(i in levels(dat$gen)){
+   print(i)
+   dati <- subset(dat, gen==i)
+   mi <- nls(yield ~ pop * a * k^pop, data=dati, start=list(a=10,k=1))
+   out[i, ] <- mi$m$getPars()
+   # Predicted values
+   pi <- cbind(gen=i, newdat, pred= predict(mi, newdat=newdat))
+   preds <- rbind(preds, pi)
+ }
[1] "Hy2x0h7"
[1] "WF9xC103"
[1] "R61x187-2"
[1] "WF9x38-11"
[1] "WF9xB14"
[1] "C103xB14"
[1] "0h43xB37"
[1] "WF9xH60"
> # Optimum plant density is -1/log(k)
> out$pop.opt <- -1/log(out$k)
> round(out, 3)
              a     k pop.opt
Hy2x0h7   0.782 0.865   6.875
WF9xC103  1.039 0.825   5.192
R61x187-2 0.998 0.798   4.441
WF9x38-11 1.042 0.825   5.203
WF9xB14   1.067 0.806   4.647
C103xB14  0.813 0.860   6.653
0h43xB37  0.673 0.862   6.740
WF9xH60   0.858 0.854   6.358
> ##               a     k pop.opt
> ## Hy2x0h7   0.782 0.865   6.875
> ## WF9xC103  1.039 0.825   5.192
> ## R61x187-2 0.998 0.798   4.441
> ## WF9x38-11 1.042 0.825   5.203
> ## WF9xB14   1.067 0.806   4.647
> ## C103xB14  0.813 0.860   6.653
> ## 0h43xB37  0.673 0.862   6.740
> ## WF9xH60   0.858 0.854   6.358
> 
> 
> # Fit an overall fixed-effect with random deviations for each hybrid.
> libs(nlme)
> m1 <- nlme(yield ~ pop * a * k^pop,
+            fixed = a + k ~ 1,
+            random = a + k ~ 1|gen,
+            data=dat, start=c(a=10,k=1))
> # summary(m1) # Random effect for 'a' probably not needed
> 
> 
> libs(latticeExtra)
Installing package into ‘/tmp/RtmpEmgKcT/RLIBS_234d022c4a966b’
(as ‘lib’ is unspecified)
also installing the dependencies ‘Rcpp’, ‘deldir’, ‘RcppEigen’, ‘png’, ‘jpeg’, ‘RColorBrewer’, ‘interp’

* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/tmp/RtmpOdOERN/R.INSTALL23d9f82cfde714/Rcpp/src'
I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c api.cpp -o api.o
/bin/bash: line 1: I/home/hornik/tmp/R.check/r-devel-clang/Work/build/include: No such file or directory
make[1]: [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:198: api.o] Error 127 (ignored)
I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c attributes.cpp -o attributes.o
/bin/bash: line 1: I/home/hornik/tmp/R.check/r-devel-clang/Work/build/include: No such file or directory
make[1]: [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:198: attributes.o] Error 127 (ignored)
I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c barrier.cpp -o barrier.o
/bin/bash: line 1: I/home/hornik/tmp/R.check/r-devel-clang/Work/build/include: No such file or directory
make[1]: [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:198: barrier.o] Error 127 (ignored)
I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c date.cpp -o date.o
/bin/bash: line 1: I/home/hornik/tmp/R.check/r-devel-clang/Work/build/include: No such file or directory
make[1]: [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:198: date.o] Error 127 (ignored)
I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c module.cpp -o module.o
/bin/bash: line 1: I/home/hornik/tmp/R.check/r-devel-clang/Work/build/include: No such file or directory
make[1]: [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:198: module.o] Error 127 (ignored)
I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c rcpp_init.cpp -o rcpp_init.o
/bin/bash: line 1: I/home/hornik/tmp/R.check/r-devel-clang/Work/build/include: No such file or directory
make[1]: [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:198: rcpp_init.o] Error 127 (ignored)
-shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
/bin/bash: line 3: -shared: command not found
make[1]: *** [/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/make/shlib.mk:10: Rcpp.so] Error 127
make[1]: Leaving directory '/tmp/RtmpOdOERN/R.INSTALL23d9f82cfde714/Rcpp/src'
ERROR: compilation failed for package ‘Rcpp’
* removing ‘/tmp/RtmpEmgKcT/RLIBS_234d022c4a966b/Rcpp’
Warning in install.packages(p) :
  installation of package ‘Rcpp’ had non-zero exit status
* installing *source* package ‘deldir’ ...
** package ‘deldir’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 17.0.6 (5)’
using Fortran compiler: ‘Debian flang-new version 17.0.6 (5)’
make[1]: Entering directory '/tmp/RtmpCNJpxK/R.INSTALL23e0546ce80da2/deldir/src'
flang-new-17  -fpic  -g -O2 -Wall -c  acchk.f90 -o acchk.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  addpt.f90 -o addpt.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  adjchk.f90 -o adjchk.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  binsrt.f90 -o binsrt.o
flang-new: warning: argument unused during compilation: '-Wall'
./binsrt.f90:79:5: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=33_8) vs CHARACTER(KIND=1,LEN=28_8)
      call intpr("and number of sorted points.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./binsrt.f90:78:5: previous reference to 'intpr'
      call intpr("Mismatch between number of points",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
flang-new-17  -fpic  -g -O2 -Wall -c  circen.f90 -o circen.o
flang-new: warning: argument unused during compilation: '-Wall'
./circen.f90:59:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=14_8) vs CHARACTER(KIND=1,LEN=44_8)
          call intpr("Points are collinear but in the wrong order.",-1,ndi,0)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./circen.f90:56:9: previous reference to 'intpr'
          call intpr("Point numbers:",-1,indv,3)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
flang-new-17  -fpic  -g -O2 -Wall -c  cross.f90 -o cross.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  delet.f90 -o delet.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  delet1.f90 -o delet1.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  delout.f90 -o delout.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  delseg.f90 -o delseg.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  dirout.f90 -o dirout.o
flang-new: warning: argument unused during compilation: '-Wall'
./dirout.f90:90:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=35_8) vs CHARACTER(KIND=1,LEN=34_8)
                  call intpr("Line from midpoint to circumcenter",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirout.f90:52:13: previous reference to 'intpr'
              call intpr("Vertices of triangle are collinear.",-1,ndi,0)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirout.f90:91:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=35_8) vs CHARACTER(KIND=1,LEN=38_8)
                  call intpr("does not intersect rectangle boundary!",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirout.f90:52:13: previous reference to 'intpr'
              call intpr("Vertices of triangle are collinear.",-1,ndi,0)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirout.f90:92:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=35_8) vs CHARACTER(KIND=1,LEN=16_8)
                  call intpr("But it HAS to!!!",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirout.f90:52:13: previous reference to 'intpr'
              call intpr("Vertices of triangle are collinear.",-1,ndi,0)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
flang-new-17  -fpic  -g -O2 -Wall -c  dirseg.f90 -o dirseg.o
flang-new: warning: argument unused during compilation: '-Wall'
./dirseg.f90:100:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=35_8) vs CHARACTER(KIND=1,LEN=34_8)
                  call intpr("Line from midpoint to circumcenter",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:72:17: previous reference to 'intpr'
                  call intpr("Vertices of triangle are collinear.",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:101:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=35_8) vs CHARACTER(KIND=1,LEN=38_8)
                  call intpr("does not intersect rectangle boundary!",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:72:17: previous reference to 'intpr'
                  call intpr("Vertices of triangle are collinear.",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:102:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=35_8) vs CHARACTER(KIND=1,LEN=16_8)
                  call intpr("But it HAS to!!!",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:72:17: previous reference to 'intpr'
                  call intpr("Vertices of triangle are collinear.",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:107:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=35_8) vs CHARACTER(KIND=1,LEN=34_8)
                  call intpr("Line from midpoint to circumcenter",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:72:17: previous reference to 'intpr'
                  call intpr("Vertices of triangle are collinear.",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:108:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=35_8) vs CHARACTER(KIND=1,LEN=38_8)
                  call intpr("does not intersect rectangle boundary!",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:72:17: previous reference to 'intpr'
                  call intpr("Vertices of triangle are collinear.",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:109:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=35_8) vs CHARACTER(KIND=1,LEN=16_8)
                  call intpr("But it HAS to!!!",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dirseg.f90:72:17: previous reference to 'intpr'
                  call intpr("Vertices of triangle are collinear.",-1,ndi,0)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
flang-new-17  -fpic  -g -O2 -Wall -c  dldins.f90 -o dldins.o
flang-new: warning: argument unused during compilation: '-Wall'
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
flang-new-17  -fpic  -g -O2 -Wall -c  initad.f90 -o initad.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  insrt.f90 -o insrt.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  insrt1.f90 -o insrt1.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  intri.f90 -o intri.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  locn.f90 -o locn.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  master.f90 -o master.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  mnnd.f90 -o mnnd.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  pred.f90 -o pred.o
flang-new: warning: argument unused during compilation: '-Wall'
./pred.f90:34:5: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=54_8) vs CHARACTER(KIND=1,LEN=39_8)
      call intpr("Adjacency list of i does not contain j.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./pred.f90:18:5: previous reference to 'intpr'
      call intpr("Adjacency list of i is empty, and so cannot contain j.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
flang-new-17  -fpic  -g -O2 -Wall -c  qtest.f90 -o qtest.o
flang-new: warning: argument unused during compilation: '-Wall'
./qtest.f90:149:1: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=30_8) vs CHARACTER(KIND=1,LEN=18_8)
  call intpr("This CAN'T happen!",-1,ndi,0)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./qtest.f90:148:1: previous reference to 'intpr'
  call intpr("Indicator ijk is out of range.",-1,ndi,0)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
flang-new-17  -fpic  -g -O2 -Wall -c  qtest1.f90 -o qtest1.o
flang-new: warning: argument unused during compilation: '-Wall'
./qtest1.f90:76:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=21_8) vs CHARACTER(KIND=1,LEN=23_8)
          call intpr("now, other vertex, nxt:",-1,indv,3)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./qtest1.f90:75:9: previous reference to 'intpr'
          call intpr("Point being added, h:",-1,itmp,1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./qtest1.f90:79:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=21_8) vs CHARACTER(KIND=1,LEN=50_8)
          call intpr("Points are collinear but h is not between i and k.",-1,ndi,0)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./qtest1.f90:75:9: previous reference to 'intpr'
          call intpr("Point being added, h:",-1,itmp,1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
flang-new-17  -fpic  -g -O2 -Wall -c  stoke.f90 -o stoke.o
flang-new: warning: argument unused during compilation: '-Wall'
./stoke.f90:166:1: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=27_8) vs CHARACTER(KIND=1,LEN=32_8)
  call intpr("Something is totally stuffed up!",-1,ndi,0)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./stoke.f90:165:1: previous reference to 'intpr'
  call intpr("Fell through all six cases.",-1,ndi,0)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./stoke.f90:167:1: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=27_8) vs CHARACTER(KIND=1,LEN=25_8)
  call intpr("Chaos and havoc in stoke.",-1,ndi,0)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./stoke.f90:165:1: previous reference to 'intpr'
  call intpr("Fell through all six cases.",-1,ndi,0)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
flang-new-17  -fpic  -g -O2 -Wall -c  succ.f90 -o succ.o
flang-new: warning: argument unused during compilation: '-Wall'
./succ.f90:35:1: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=54_8) vs CHARACTER(KIND=1,LEN=3_8)
  call intpr("i =",-1,ndi,1)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^
./succ.f90:18:5: previous reference to 'intpr'
      call intpr("Adjacency list of i is empty, and so cannot contain j.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./succ.f90:37:1: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=54_8) vs CHARACTER(KIND=1,LEN=3_8)
  call intpr("j =",-1,ndi,1)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^
./succ.f90:18:5: previous reference to 'intpr'
      call intpr("Adjacency list of i is empty, and so cannot contain j.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./succ.f90:38:1: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=54_8) vs CHARACTER(KIND=1,LEN=39_8)
  call intpr("Adjacency list of i does not contain j.",-1,ndi,0)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./succ.f90:18:5: previous reference to 'intpr'
      call intpr("Adjacency list of i is empty, and so cannot contain j.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
flang-new-17  -fpic  -g -O2 -Wall -c  swap.f90 -o swap.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  testeq.f90 -o testeq.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  triar.f90 -o triar.o
flang-new: warning: argument unused during compilation: '-Wall'
flang-new-17  -fpic  -g -O2 -Wall -c  trifnd.f90 -o trifnd.o
flang-new: warning: argument unused during compilation: '-Wall'
./trifnd.f90:45:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=21_8) vs CHARACTER(KIND=1,LEN=14_8)
          call intpr("Point number =",-1,ndi,1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:16:5: previous reference to 'intpr'
      call intpr("No triangles to find.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:46:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=21_8) vs CHARACTER(KIND=1,LEN=18_8)
          call intpr("Previous triangle:",-1,tau,3)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:16:5: previous reference to 'intpr'
      call intpr("No triangles to find.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:47:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=21_8) vs CHARACTER(KIND=1,LEN=36_8)
          call intpr("Both vertex orderings are clockwise.",-1,ndi,0)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:16:5: previous reference to 'intpr'
      call intpr("No triangles to find.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:48:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=21_8) vs CHARACTER(KIND=1,LEN=20_8)
          call intpr("See help for deldir.",-1,ndi,0)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:16:5: previous reference to 'intpr'
      call intpr("No triangles to find.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:141:5: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=21_8) vs CHARACTER(KIND=1,LEN=18_8)
      call intpr("Point being added:",-1,ndi,1)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:16:5: previous reference to 'intpr'
      call intpr("No triangles to find.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:142:5: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=21_8) vs CHARACTER(KIND=1,LEN=34_8)
      call intpr("Cannot find an enclosing triangle.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:16:5: previous reference to 'intpr'
      call intpr("No triangles to find.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:143:5: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=21_8) vs CHARACTER(KIND=1,LEN=20_8)
      call intpr("See help for deldir.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./trifnd.f90:16:5: previous reference to 'intpr'
      call intpr("No triangles to find.",-1,ndi,0)
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
clang-17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o deldir.so acchk.o addpt.o adjchk.o binsrt.o circen.o cross.o delet.o delet1.o delout.o delseg.o dirout.o dirseg.o dldins.o init.o initad.o insrt.o insrt1.o intri.o locn.o master.o mnnd.o pred.o qtest.o qtest1.o stoke.o succ.o swap.o testeq.o triar.o trifnd.o -L/usr/lib/llvm-17/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpCNJpxK/R.INSTALL23e0546ce80da2/deldir/src'
make[1]: Entering directory '/tmp/RtmpCNJpxK/R.INSTALL23e0546ce80da2/deldir/src'
make[1]: Leaving directory '/tmp/RtmpCNJpxK/R.INSTALL23e0546ce80da2/deldir/src'
installing to /tmp/RtmpEmgKcT/RLIBS_234d022c4a966b/00LOCK-deldir/00new/deldir/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deldir)
* installing *source* package ‘png’ ...
** package ‘png’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 17.0.6 (5)’
make[1]: Entering directory '/tmp/RtmppTeTlT/R.INSTALL2410df234ec51a/png/src'
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   `libpng-config --cflags` -fpic  -g -O3 -Wall -pedantic -c dummy.c -o dummy.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   `libpng-config --cflags` -fpic  -g -O3 -Wall -pedantic -c read.c -o read.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   `libpng-config --cflags` -fpic  -g -O3 -Wall -pedantic -c write.c -o write.o
clang-17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o png.so dummy.o read.o write.o -lpng16 -lm -lz -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmppTeTlT/R.INSTALL2410df234ec51a/png/src'
make[1]: Entering directory '/tmp/RtmppTeTlT/R.INSTALL2410df234ec51a/png/src'
make[1]: Leaving directory '/tmp/RtmppTeTlT/R.INSTALL2410df234ec51a/png/src'
installing to /tmp/RtmpEmgKcT/RLIBS_234d022c4a966b/00LOCK-png/00new/png/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (png)
* installing *source* package ‘jpeg’ ...
** package ‘jpeg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 17.0.6 (5)’
make[1]: Entering directory '/tmp/RtmpEVjx6Y/R.INSTALL2420d2599b85a9/jpeg/src'
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c read.c -o read.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c reg.c -o reg.o
clang-17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c write.c -o write.o
clang-17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o jpeg.so read.o reg.o write.o -ljpeg -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpEVjx6Y/R.INSTALL2420d2599b85a9/jpeg/src'
make[1]: Entering directory '/tmp/RtmpEVjx6Y/R.INSTALL2420d2599b85a9/jpeg/src'
make[1]: Leaving directory '/tmp/RtmpEVjx6Y/R.INSTALL2420d2599b85a9/jpeg/src'
installing to /tmp/RtmpEmgKcT/RLIBS_234d022c4a966b/00LOCK-jpeg/00new/jpeg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jpeg)
* installing *source* package ‘RColorBrewer’ ...
** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RColorBrewer)
ERROR: dependency ‘Rcpp’ is not available for package ‘RcppEigen’
* removing ‘/tmp/RtmpEmgKcT/RLIBS_234d022c4a966b/RcppEigen’
Warning in install.packages(p) :
  installation of package ‘RcppEigen’ had non-zero exit status
ERROR: dependencies ‘Rcpp’, ‘RcppEigen’ are not available for package ‘interp’
* removing ‘/tmp/RtmpEmgKcT/RLIBS_234d022c4a966b/interp’
Warning in install.packages(p) :
  installation of package ‘interp’ had non-zero exit status
ERROR: dependency ‘interp’ is not available for package ‘latticeExtra’
* removing ‘/tmp/RtmpEmgKcT/RLIBS_234d022c4a966b/latticeExtra’
Warning in install.packages(p) :
  installation of package ‘latticeExtra’ had non-zero exit status
Error in library(p, character.only = TRUE) : 
  there is no package called ‘latticeExtra’
Calls: libs -> library
Execution halted