Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘flexsurv’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fastDummies', 'fields', 'geosphere', 'ggplot2', 'plyr',
  'posterior', 'R2jags', 'stringr', 'tidybayes', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'haven', 'readr', 'readxl', 'dplyr', 'dbplyr',
  'RMariaDB', 'sparklyr', 'RPresto', 'nodbi', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'PKNCA', 'lubridate', 'marelac', 'seacarb'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'marelac', 'readxl', 'roll', 'stringr', 'xml2'

Packages suggested but not available for checking:
  'rmarkdown', 'FishResp', 'respirometry', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'xml2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'memoise', 'readr'

Packages suggested but not available for checking:
  'httptest2', 'rmarkdown', 'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringi', 'duckdb', 'fs', 'ape'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'mockery'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjson’

Package suggested but not available for checking: ‘rsolr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RJSONIO’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'terra', 'units'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'rmarkdown', 'landscapemetrics', 'ggthemes',
  'paletteer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'scales', 'stringr', 'ggplot2', 'scatterpie'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ic.infer', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'digest'

Packages suggested but not available for checking: 'lintr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'useful', 'dplyr', 'rmarkdown'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nloptr’

Packages suggested but not available for checking: 'melt', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjson’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen', 'RcppThread'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppTOML'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'fs', 'haven', 'labelled', 'snakecase', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'stringi', 'stringr', 'rvest'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘later’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) elink.Rd:70-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elink.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elink.Rd:74-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reutils-package.Rd:114: Lost braces
   114 |      code{reutils.test.remote} to \code{TRUE} to run the full suite of tests.
       |          ^
Running ‘test-all.R’ [0s/1s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'future', 'furrr', 'rmarkdown', 'ggplot2', 'tidyr', 'rivr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bayesplot', 'exdex', 'Rcpp', 'rust', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'stringr', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'dplyr'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rsamtools', 'BSgenome', 'BSgenome.Hsapiens.UCSC.hg38'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'phytools', 'dplyr', 'ggtree', 'tidytree', 'treeio',
  'ggplot2', 'reshape', 'tidyr', 'gginnards', 'ggplotify', 'ggpp',
  'ggimage', 'deeptime', 'scales'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'phangorn'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RJSONIO’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bigrquery', 'dbplyr', 'dplyr', 'DT', 'gargle', 'golem', 'redcapAPI',
  'REDCapR', 'RPostgres', 'RSQLite', 'shiny', 'shinycssloaders',
  'shinydashboard', 'shinydashboardPlus', 'shinyjs', 'shinyWidgets',
  'snakecase', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'fs', 'gt', 'htmltools', 'pkgload', 'readr', 'rmarkdown', 'spelling',
  'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘covr’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ape', 'stringr', 'usethis'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'devtools', 'RevGadgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ade4', 'plotly', 'shiny', 'shinydashboard', 'tm', 'topicmodels'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rockchalk', 'lme4', 'plm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'Hmisc', 'rmarkdown', 'roxygen2',
  'rvest', 'stringr', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'stringi'

Packages suggested but not available for checking:
  'devtools', 'lintr', 'rmarkdown', 'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'httpuv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'fs', 'xml2'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'downloader', 'dplyr', 'haven', 'janitor', 'lubridate', 'readr',
  'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'leaflet', 'leaflet.extras', 'ggplot2', 'scales',
  'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'Rfast', 'RANN', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppZiggurat', 'RcppParallel', 'RcppArmadillo'

Package suggested but not available for checking: ‘philentropy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mice', 'ranger'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Packages required but not available:
  'digest', 'dplyr', 'lubridate', 'tidyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RJSONIO', 'httpuv', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'R.cache'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ranger’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'memoise', 'readr', 'stringr', 'dplyr', 'dbplyr', 'duckdb',
  'contentid', 'fs'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'FSA', 'covr', 'pkgdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'prettydoc', 'patchwork', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'rjson'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'sf', 'rworldmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) disp.Rd:20: Lost braces; missing escapes or markup?
    20 | sum_{i=1}^n a(R(e_i)) * e_i where 
       |     ^
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'igraph', 'sf'

Packages suggested but not available for checking: 'rmarkdown', 'spdep'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ranger', 'vita'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'MKomics'
Running examples in ‘RFLPtools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: RFLPtools-package
> ### Title: Tools To Analyse RFLP-Data
> ### Aliases: RFLPtools-package RFLPtools
> ### Keywords: package multivariate cluster
> 
> ### ** Examples
> 
> data(RFLPdata)
> res <- RFLPdist(RFLPdata)
> plot(hclust(res[[1]]), main = "Euclidean distance")
> 
> par(mfrow = c(1,2))
> plot(hclust(RFLPdist(RFLPdata, nrBands = 3)), cex = 0.7)
> RFLPplot(RFLPdata, nrBands = 3, mar.bottom = 6, cex.axis = 0.8)
> 
> data(RFLPref)
> RFLPrefplot(RFLPdata, RFLPref, nrBands = 6, cex.axis = 0.8)
> 
> 
> library(MKomics)
Error in library(MKomics) : there is no package called ‘MKomics’
Execution halted
Package required but not available: ‘terra’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'landscapemetrics'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggthemes', 'lubridate', 'tidyr', 'xplorerr'

Packages suggested but not available for checking:
  'covr', 'DT', 'kableExtra', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GEOmap', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'fs', 'usethis'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'stringr', 'reshape2', 'ggplot2', 'covr', 'testthat', 'spelling'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'visNetwork', 'glmnet', 'pROC', 'RcppArmadillo', 'RcppThread'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'ggplot2', 'scales', 'swfscMisc', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ranger', 'hdrcde', 'data.tree', 'DiagrammeR'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gmp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rPref', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'fda', 'plotly', 'shiny', 'Rssa', 'ggplot2', 'RSpectra',
  'rainbow', 'ftsa', 'dplyr', 'RcppArmadillo', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found export directive that requires package ‘methods’:
  ‘exportClasses’
Remove all such namespace directives (if obsolete) or ensure that the
DESCRIPTION Depends or Imports field contains ‘methods’.
checkRd: (-1) logLoss.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{y}{vector of observed binomial values {0,1}}
       |                                             ^
checkRd: (-1) logLoss.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{p}{vector of predicted probabilities {0-1}}
       |                                            ^
checkRd: (-1) logLoss.Rd:35: Lost braces; missing escapes or markup?
    35 |       in {0,1} and estimated probability yp that yt = 1, the log loss is derived as: 
       |          ^
checkRd: (-1) rf.modelSel.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rf.modelSel.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rf.modelSel.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rf.modelSel.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rf.modelSel.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rf.modelSel.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rf.modelSel.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'ggpubr', 'dplyr', 'ranger'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ranger', 'permimp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'torch', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'openxlsx', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'ggplot2', 'crul', 'oai', 'wk'

Packages suggested but not available for checking:
  'testthat', 'terra', 'magick', 'protolite', 'sf', 'vcr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) tk.browse.Rd:29: Lost braces
    29 |     Single logical value, whether to wait for the interface window to be closed before unfreezing the R console. The \code{FALSE} default let you use R and the interface in parallel (see the 'Typing R commands while browsing' section below), the code{TRUE} value is used essentially in the stand alone version.
       |                                                                                                                                                                                                                                                           ^
checkRd: (-1) tk.convert.Rd:17: Lost braces
    17 |     Single logical value, whether to wait for the interface window to be closed before unfreezing the R console. The \code{FALSE} default let you use R and the interface in parallel, the code{TRUE} is used essentially in the stand alone version.
       |                                                                                                                                                                                                ^
checkRd: (-1) tk.tracks.Rd:8: Lost braces
     8 |   This function allows to load and edit the \code{\linkS4class{drawable.list}} object that is to be passed to \code{\link{tk.browse}} and code{\link{browsePlot}}, using a Tcl-tk interface
       |                                                                                                                                               ^
Packages required but not available: 'caret', 'ggplot2', 'ggrepel'

Packages suggested but not available for checking:
  'devtools', 'FactoMineR', 'pander', 'rmarkdown', 'rticles',
  'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ptw’

Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

Packages suggested but not available for checking:
  'terra', 'raster', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'leaflet', 'leafem'

Packages suggested but not available for checking:
  'magick', 'geojsonio', 'sf', 'stars', 'googledrive', 'gargle',
  'digest', 'testthat', 'future', 'terra', 'covr', 'rmarkdown',
  'googleCloudStorageR', 'leaflet.extras2', 'spelling', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) GenDataPopulation.Rd:21: Lost braces
    21 | {data}{Population of data}
       |       ^
checkRd: (-1) GenDataSample.Rd:23: Lost braces
    23 | {data}{Sample of data}
       |       ^
'LazyData' is specified without a 'data' directory
Packages required but not available: 'copula', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'lubridate', 'mapview', 'sf', 'ggplot2', 'reshape2',
  'RefManageR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘test_generate.R’ [0s/0s]
Running the tests in ‘tests/test_generate.R’ failed.
Complete output:
  > # This is a test script for RGENERATE::generate function
  > # 
  > # Author: Emanuele Cordano
  > ###############################################################################
  > rm(list=ls())
  > 
  > ## TESTING R CODE: 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'dplyr', 'stringr', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rgenoud.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available: 'digest', 'sf', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readr', 'sf', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'geosphere', 'leaflet', 'RANN', 'raster', 'spatstat.geom'

Packages suggested but not available for checking:
  'htmlwidgets', 'leafsync', 'rgdal', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'servr'

Packages suggested but not available for checking: 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringi', 'data.tree', 'tidyr', 'dplyr', 'RJSONIO'

Packages suggested but not available for checking:
  'DiagrammeR', 'DiagrammeRsvg', 'rmarkdown', 'rtracklayer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'sf', 'tmap'
checkRd: (-1) Ghana_2021_school_attendance.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Ghana_2021_school_attendance_geometry.Rd:75: Lost braces in \itemize; meant \describe ?
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

Packages suggested but not available for checking:
  'rmarkdown', 'V8', 'manipulateWidget'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘readr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rglpk.Rcheck/00install.out’ for details.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'rmarkdown', 'magick', 'interp', 'alphashape3d', 'js', 'webshot2',
  'downlit', 'pkgdown', 'shiny', 'manipulateWidget', 'testthat',
  'crosstalk', 'V8', 'chromote'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'genieclust', 'RSpectra', 'ggplot2', 'reshape2', 'DescTools',
  'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BDgraph', 'ggplot2', 'pROC', 'reshape2', 'huge', 'Rcpp'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'e1071', 'FNN', 'gbm', 'modelr', 'infotheo', 'ggplot2', 'kknn'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘readr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gargle', 'stringr', 'dplyr', 'tidyr', 'snakecase', 'rvest',
  'memoise', 'cachem'

Packages suggested but not available for checking: 'rmarkdown', 'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lubridate', 'ottrpal', 'stringr', 'dplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'PBSmapping', 'leaflet'
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Package required but not available: ‘sf’

Packages suggested but not available for checking: 'rmarkdown', 'geojsonsf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘tikzDevice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'ggplot2', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'RedeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

Packages suggested but not available for checking:
  'terra', 'rmarkdown', 'sf', 'stars', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RPostgres’

Packages suggested but not available for checking: 'DBItest', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘bayesm’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > #
  > # This is for local testing only and should not be included when uploading to CRAN.
  > #
  > # groovyJars <- list (
  > #     "C:/.../groovy-2.4.5-indy.jar"
  > # )
  > #
  > # options(GROOVY_JARS=groovyJars)
  > #
  > 
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ade4’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'spelling'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'stars', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'rmarkdown', 'shiny', 'miniUI', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘IHSEP’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'stringr'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'ggplot2', 'patchwork'

Packages suggested but not available for checking:
  'rmarkdown', 'ggtree', 'phytools', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fs', 'lintr', 'sass', 'shiny', 'styler', 'testthat'

Packages suggested but not available for checking:
  'covr', 'mockery', 'rcmdcheck', 'rmarkdown', 'shiny.react',
  'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Hmisc', 'GGally', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > ## -*- mode: R -*-
  > ##
  > ## Copyright (C) 2019 Takeshi Abe <tabe@fixedpoint.jp>
  > ##
  > ## This program is free software: you can redistribute it and/or modify
  > ## it under the terms of the GNU General Public License as published by
  > ## the Free Software Foundation, either version 3 of the License, or
  > ## (at your option) any later version.
  > ##
  > ## This program is distributed in the hope that it will be useful,
  > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
  > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > ## GNU General Public License for more details.
  > ##
  > ## You should have received a copy of the GNU General Public License
  > ## along with this program.  If not, see <https://www.gnu.org/licenses/>.
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Found the following files/directories:
  ‘mydata.rda’ ‘thedata.rda’
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) GenerateClusterData.Rd:34: Lost braces; missing escapes or markup?
    34 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2},
       |                                                ^
checkRd: (-1) GenerateClusterData.Rd:35: Lost braces; missing escapes or markup?
    35 | -v_{(numberOfClusters-1)/2} (if \code{numberOfClusters} is odd)
       |    ^
checkRd: (-1) GenerateClusterData.Rd:36: Lost braces; missing escapes or markup?
    36 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2}
       |                                                ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:25-26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:27-28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:29-30: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:31-32: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:33-34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:35-36: Lost braces
    35 |    \item{pam_cluster_64_7_5715},{N=64, seven clusters with 5715 vectors per
       |                                 ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:37-38: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:39-40: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'nonlinearTseries', 'lomb'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'rcmdcheck'

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘seqinr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘RSpectra’

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'estimatr', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'oro.dicom', 'oro.nifti'

Packages suggested but not available for checking:
  'rmarkdown', 'nat', 'reticulate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘digest’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘riceidconverter’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'tidyverse', 'SuperLearner', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fst', 'readr', 'prt'

Packages suggested but not available for checking:
  'xml2', 'covr', 'testthat', 'pkgload', 'mimic.demo', 'eicu.demo',
  'rmarkdown', 'ggplot2', 'cowplot', 'forestmodel', 'rticles',
  'kableExtra', 'units', 'pdftools', 'magick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'sdetorus', 'sphunif', 'RcppArmadillo'

Packages suggested but not available for checking:
  'BAMBI', 'covr', 'DirStats', 'GGally', 'ggplot2', 'rmarkdown',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CVXR', 'Rcpp', 'RiemBase', 'Rdimtools', 'T4cluster', 'maotai',
  'RcppArmadillo'

Packages suggested but not available for checking: 'R.rsp', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking:
  'dplyr', 'forecast', 'ggplot2', 'httptest2', 'rmarkdown', 'testthat',
  'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tidyr', 'dplyr', 'ggplot2', 'rjson', 'stringr', 'urltools'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bslib', 'dplyr', 'fs', 'lubridate', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'httptest2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tidyverse', 'car'
checkRd: (-1) descrip.Rd:122: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:123: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:124-125: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:126-128: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:129-133: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:134-135: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:136-138: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:139-140: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:141-144: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:145-146: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:147: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:148: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) descrip.Rd:149: Lost braces in \itemize; \value handles \item{}{} directly
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'plyr', 'dplyr', 'stringr', 'readr', 'tidyr', 'haven', 'xml2', 'DT'

Packages suggested but not available for checking:
  'rmarkdown', 'devtools', 'plotly', 'ggplot2', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spatstat.geom', 'spatstat'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'testthat', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'UpSetR', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'sf', 'dplyr', 'lubridate', 'ggforce',
  'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘survey’
checkRd: (-1) correct_sign.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) correct_sign.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'stringr', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘htmltools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rioja.Rcheck/00install.out’ for details.
Packages required but not available: 'haven', 'readxl', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'fst', 'pzfx', 'readODS', 'readr', 'rmarkdown', 'xml2',
  'qs', 'arrow'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'httptest2', 'kableExtra', 'readr', 'rmarkdown', 'spelling',
  'testthat', 'xml2'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'Rcpp', 'reshape2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'igraph', 'IsingSampler'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mlogit', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'dplyr', 'usethis', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'ggpubr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'tidyverse', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xml2', 'urltools', 'memoise', 'covr', 'pkgload', 'devtools'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'testthat', 'webmockr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nloptr', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'ggplot2', 'portfolioBacktest', 'prettydoc', 'rmarkdown', 'R.rsp',
  'testthat'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'R.rsp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nloptr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lava', 'mets', 'prodlim', 'Publish', 'ranger', 'Rcpp',
  'rms', 'timereg', 'RcppArmadillo'

Packages suggested but not available for checking:
  'casebase', 'glmnet', 'gbm', 'flexsurv', 'hal9001', 'pec',
  'penalized', 'pROC', 'randomForestSRC', 'SuperLearner', 'testthat',
  'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'kableExtra', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘kableExtra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'broom', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'spelling'
Package required but not available: ‘xml2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'nanotime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following files/directories:
  ‘B110711CD4.CSV’ ‘inputparam2.txt’ ‘itcout0.pdf’ ‘itcout1.eps’
  ‘origin_data.csv’
Packages required but not available: 'solrium', 'crul'

Packages suggested but not available for checking:
  'testthat', 'webmockr', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'tidyr', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'roxygen2'

Package which this enhances but not available for checking: ‘optmatch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'igraph', 'tidyr', 'dodgr', 'reshape2'

Packages suggested but not available for checking:
  'ggplot2', 'viridis', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                             ^
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                                                                   ^
Packages required but not available:
  'spam', 'raster', 'sf', 'terra', 'elevatr', 'OCNet', 'Rcpp', 'fields'

Packages suggested but not available for checking: 'rmarkdown', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rrcov’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dataRetrieval', 'devtools', 'dplyr', 'lubridate', 'readr',
  'RSelenium', 'rvest', 'stringr', 'tidyhydat', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘V8’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'openxlsx', 'readxl', 'Rcpp', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rjags.Rcheck/00install.out’ for details.
Non-standard file/directory found at top level:
  ‘jri’
Found the following possibly unsafe calls:
File ‘rJava/R/import.R’:
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File ‘rJava/R/jinit.R’:
  unlockBinding(x, .env)
  unlockBinding(x, pe)
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  jri/src/Makefile.win
  jri/src/win32/Makefile
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Note: information on .o files is not available
File ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  Found ‘_exit’, possibly from ‘_exit’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
  Found ‘stdout’, possibly from ‘stdout’ (C)
File ‘rJava/libs/rJava.so’:
  Found non-API calls to R: ‘R_CStackLimit’, ‘R_CStackStart’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages required but not available:
  'Rcpp', 'infotheo', 'profvis', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
License stub is invalid DCF.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘kableExtra’

Packages suggested but not available for checking: 'rmarkdown', 'ggdemetra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggdemetra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘gplots’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'devtools', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'BiocStyle', 'rmarkdown'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rjsoncons.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RJSONIO.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rjson.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘IRdisplay’
Packages suggested but not available for checking: 'testthat', 'reshape'
Running examples in ‘rjstat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: toJSONstat
> ### Title: Convert data frame(s) to JSON-stat format
> ### Aliases: toJSONstat
> 
> ### ** Examples
> 
> library(reshape)
Error in library(reshape) : there is no package called ‘reshape’
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'distill', 'stringr', 'hunspell', 'fs', 'bookdown', 'rmarkdown'

Packages suggested but not available for checking: 'pdftools', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘tm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pmml', 'downloader'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'stringr', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen', 'RcppGSL'

Package suggested but not available for checking: ‘lhs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ks', 'sf', 'ggplot2', 'randomcoloR', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ape', 'ComplexHeatmap', 'reshape2', 'dplyr',
  'factoextra', 'FactoMineR', 'ggpubr', 'stringr'

Package suggested but not available for checking: ‘viridis’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'R.cache', 'broom', 'ggplot2', 'tidyr', 'dplyr', 'lubridate',
  'highcharter', 'PTXQC', 'stringr', 'urltools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid package aliases in Rd file 'rkt-package.Rd':
  ‘tkt-package’
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Exponential.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) Gamma.Rd:80: Escaped LaTeX specials: \&
checkRd: (-1) college.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) college.Rd:15: Escaped LaTeX specials: \$
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘plyr’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'fs', 'rmarkdown', 'testthat', 'usethis'

Package which this enhances but not available for checking: ‘winch’
Running ‘sink.R’ [1s/1s]
  Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Workaround for loadNamespace() failure on R 3.2
  > requireNamespace("rlang")
  Loading required namespace: rlang
  > 
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'jrc', 'plyr'

Packages suggested but not available for checking:
  'spelling', 'dplyr', 'tidyr', 'ggplot2', 'testthat', 'httpuv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'copula'
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘covr’
Package required but not available: ‘V8’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'plyr', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'sf'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstantools', 'forecast', 'rstan', 'StanHeaders',
  'RcppEigen', 'RcppParallel'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'raster', 'Rcpp', 'sf'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'RobustGaSP'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'plyr', 'FNN', 'dplyr', 'ggrepel', 'Rtsne', 'ggplot2',
  'RANN', 'uwot', 'scattermore', 'patchwork', 'cowplot',
  'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'Seurat', 'SeuratObject', 'reticulate', 'rmarkdown', 'testthat',
  'org.Hs.eg.db', 'reactome.db', 'fgsea', 'AnnotationDbi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'snakecase', 'stringr', 'tidyr', 'urltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘httpuv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘formatters’

Packages suggested but not available for checking:
  'dplyr', 'stringi', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'stringr', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'lme4'

Package which this enhances but not available for checking: ‘lmerTest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rLTP.Rcheck/00install.out’ for details.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'spelling', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Luminescence', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Luminescence', 'shiny', 'rhandsontable', 'shinydashboard', 'RCarb',
  'readxl', 'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > #! /usr/bin/env Rscript
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'GA', 'e1071', 'ecp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'pryr', 'rmarkdown', 'visNetwork'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'memoise'

Packages suggested but not available for checking:
  'ggraph', 'mapview', 'rmarkdown', 'sf', 'spelling', 'tidygraph',
  'testthat', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'geojsonsf', 'jsonify', 'readr', 'sf', 'V8'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'units'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'geojsonio', 'tidyr', 'digest', 'sf'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking:
  'DBItest', 'decor', 'readr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'dplyr', 'tidyr', 'plyr', 'raster'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bslib', 'fontawesome', 'htmltools', 'jquerylib', 'stringr'

Packages suggested but not available for checking:
  'digest', 'dygraphs', 'fs', 'rsconnect', 'downlit', 'katex', 'sass',
  'shiny', 'testthat', 'cleanrmd'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘lubridate’
checkRd: (-1) ComprehensiveTemperatureGenerator.Rd:68: Lost braces; missing escapes or markup?
    68 | \item{exogen_all}{data frame containing exogenous variable formatted like \code{Tx_all} and {Tn_all}. Default is \code{NULL}. 
       |                                                                                             ^
checkRd: (-1) qqplot_RMAWGEN_Tx.Rd:70: Lost braces; missing escapes or markup?
    70 | \code{Tx_gen},{Tn_gen} and \code{main} must have an even number of elements.
       |               ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ktaucenters’

Packages suggested but not available for checking:
  'tclust', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'dplyr', 'stringi', 'igraph'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'lme4', 'merTools', 'AICcmodavg', 'testthat',
  'vdiffr', 'covr', 'ggExtra', 'gglm'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'reshape', 'pander', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'RcppParallel', 'dplyr', 'tidyr',
  'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rmarkdown', 'bookdown', 'htmltools'

Packages suggested but not available for checking:
  'questionr', 'DT', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'rmarkdown', 'pkgdown', 'covr', 'spelling',
  'dplyr', 'DT', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rmarkdown', 'bookdown'

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'OpenMx', 'modelr', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'devtools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘refund’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rugarch', 'Bessel', 'ff', 'pcaPP', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'kknn', 'adabag', 'Cubist', 'kernlab', 'e1071', 'glmnet', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'Rcpp'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘minqa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ff’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'tgp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking: 'latticeExtra', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'Rmixmod', 'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RMixtCompUtilities', 'RMixtCompIO', 'ggplot2', 'plotly', 'scales'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'Rmixmod', 'ClusVis', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'RMixtCompIO', 'Rmixmod'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘RSpectra’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ff', 'recommenderlab'
Running examples in ‘RMOA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: datastream_ffdf
> ### Title: data streams on an ffdf
> ### Aliases: datastream_ffdf
> 
> ### ** Examples
> 
> ## You need to load package ff before you can use datastream_ffdf
> require(ff)
Loading required package: ff
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘ff’
> irisff <- as.ffdf(factorise(iris))
Error in as.ffdf(factorise(iris)) : could not find function "as.ffdf"
Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'igraph', 'pryr', 'digest'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'readr', 'stringr', 'tidyr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'tidyr', 'haven', 'fs', 'fabR', 'madshapR'

Packages suggested but not available for checking: 'janitor', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GA', 'ggplot2', 'plotly'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rgl', 'ecr', 'dplyr', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'fPortfolio', 'rugarch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following calls to attach():
File ‘Rmosek/R/builder.R’:
  attach(builderenv, pos, name, warn.conflicts)
See section ‘Good practice’ in ‘?attach’.
Package required but not available: ‘nloptr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid NAMESPACE file, parsing gives:
Error in packageVersion("gmp"): there is no package called ‘gmp’

See section ‘Package namespaces’ in the ‘Writing R Extensions’ manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) DO.unit.convert.Rd:24: Lost braces; missing escapes or markup?
    24 |     Units of dissolved oxygen concentration desired, i.e. to be converted to. Must be \code{"mg/L"}, \code{"PP"}, or {"pct"}.
       |                                                                                                                      ^
checkRd: (-1) MR.loops.Rd:80: Lost braces; missing escapes or markup?
    80 | Returns a list of 2. \code{$MR.summary} is of class {data.frame} with 3 columns: \code{$MR} (metabolic rate in user specified units, this is the same as the slope in each linear model), \code{$sd.slope} (standard deviation of slopes calculation), \code{$r.square} (adjusted r square value from each model). This second object is a list of \code{biglm} objects, each one representing a metabolic loop (see McDonnell and Chapman 2016). 
       |                                                     ^
checkRd: (-1) get.pcrit.Rd:27: Lost braces; missing escapes or markup?
    27 | Metabolic rate variable name, formatted as character. Default = \code{NULL}. If this argument takes a value, Pcrit will be calculated by regressing \code{MR.var.name} on \code{DO.var.name}. \code{time.var} and {time.interval} should, in this case, take no value. If \code{MR.var.name} is left as\code{NULL}, then instantaneous metabolic rates (MR) at specified time intervals (see \code{time.interval}) from \code{DO.var.name} and \code{time.var}.
       |                                                                                                                                                                                                                   ^
checkRd: (-1) tot.rss.Rd:35: Lost braces
    35 | code{\link{sumsq}}
       |     ^
checkRd: (-1) tot.rss.Rd:36: Lost braces
    36 | code{\link{get.pcrit}}
       |     ^
Packages required but not available:
  'rms', 'Rcpp', 'rstan', 'Hmisc', 'ggplot2', 'digest', 'RcppEigen',
  'RcppParallel', 'StanHeaders'

Packages suggested but not available for checking:
  'cmdstanr', 'bayesplot', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'readr', 'dplyr', 'tbl2xts'

Packages suggested but not available for checking: 'lubridate', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Hmisc', 'ggplot2', 'htmlTable', 'htmltools', 'digest'

Packages suggested but not available for checking:
  'plotly', 'mice', 'rmsb', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'srlars', 'robStepSplitReg', 'cellWise', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'mvnfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rata', 'reshape2', 'Rirt'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mpoly', 'rARPACK'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dbscan', 'glmnet', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RMVL.Rcheck/00install.out’ for details.
Packages required but not available:
  'bigmemory', 'Rcpp', 'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'pdp', 'ranger', 'stringr',
  'viridis', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'openair'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'jsonvalidate', 'rmarkdown', 'R6P', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plgp', 'lhs'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'igraph', 'hot.deck', 'glmnet'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'AnnotationHub', 'ensembldb', 'DESeq2', 'vsn', 'ComplexHeatmap',
  'ggpointdensity', 'ggrepel', 'gghighlight', 'ggplot2', 'ggsci',
  'cowplot', 'patchwork', 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'recount3', 'apeglm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'httptest', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Packages required but not available: 'sf', 'terra'

Packages suggested but not available for checking:
  'devtools', 'dplyr', 'ggplot2', 'ggrepel', 'rmarkdown',
  'rnaturalearthhires', 'testthat', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RJSONIO’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'httptest', 'testthat', 'rmarkdown', 'ggplot2'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Malformed Title field: should not end in a period.
Packages required but not available: 'fields', 'tgp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'ape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'gaston', 'RcppParallel'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gaston', 'qtl'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) NlistServersInCategory.Rd:11: Escaped LaTeX specials: \_
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'igraph'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'stringi', 'scales', 'wordcloud', 'quanteda', 'Rcpp',
  'RcppEigen'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'plyr', 'reshape2', 'dplyr', 'tidyr', 'stringr', 'stringi',
  'xml2'

Packages suggested but not available for checking:
  'spelling', 'rdflib', 'geiger', 'phytools', 'rfigshare',
  'knitcitations', 'testthat', 'rmarkdown', 'xslt', 'covr', 'taxalight'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Package required but not available: ‘digest’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'survey', 'rvest', 'xml2', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'covr'

Packages which this enhances but not available for checking:
  'oro.nifti', 'tractor.base'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RNifti', 'RcppEigen'

Packages suggested but not available for checking: 'mmand', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'gemtc', 'ggfittext', 'ggplot2', 'ggpubr', 'ggrepel',
  'netmeta', 'pcnetmeta', 'R2jags', 'reshape2', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'scales', 'igraph', 'ptw', 'ggplot2', 'plotly', 'plyr',
  'minqa'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dqrng', 'Rcpp', 'sitmo'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'crul', 'lubridate', 'dplyr', 'tidyr', 'ggplot2', 'scales', 'xml2',
  'isdparser', 'geonames', 'hoardr'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'taxize', 'raster', 'leaflet', 'rgdal',
  'vcr', 'webmockr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rvest', 'stringr', 'fields', 'GEOmap', 'MBA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'plyr'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'covr', 'rmarkdown', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lubridate', 'ggmap', 'ggplot2', 'sf'

Packages suggested but not available for checking:
  'testthat', 'covr', 'lintr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'lubridate', 'ghql'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lubridate', 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking: 'reshape2', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'plyr', 'miniUI', 'shiny', 'tidyr'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'covr', 'rmarkdown', 'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'igraph', 'sf', 'units', 'terra'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'viridis', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'scales', 'dplyr', 'ggplot2', 'plotly'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rrcov’

Package suggested but not available for checking: ‘ROptEst’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'blockmodels', 'ggplot2', 'GREMLINS', 'igraph', 'pammtools',
  'partitions'

Packages suggested but not available for checking:
  'dplyr', 'patchwork', 'rmarkdown', 'spelling', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) cubinf.summaries.Rd:46: Lost braces
    46 | The class "lm" functions \code{effects}, \code{alias}, \code{add1}, \code{drop1}, code{kappa},
       |                                                                                       ^
Running examples in ‘robcbi-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: QQline
> ### Title: Add a theoretical QQ-line in a plot
> ### Aliases: QQline
> ### Keywords: stats
> 
> ### ** Examples
> 
> library(robcbi)
> data(Finney)
> Vol  <- Finney$Vol; Rate <- Finney$Rate; Resp <- Finney$Resp
> lVol <-log(Vol); lRate <- log(Rate)
> z.cub <- glm(Resp~lVol+lRate,family=binomial,method="cubinf", ufact=3.2)
Floating point exception
Packages required but not available:
  'ggplot2', 'e1071', 'fda', 'rrcov', 'dplyr', 'fpc', 'GGally',
  'ggfortify', 'kernlab', 'tidyr', 'robustHD', 'VIM', 'reshape2',
  'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/robfilter.Rcheck/00install.out’ for details.
Packages required but not available:
  'fda', 'fda.usc', 'goffda', 'pcaPP', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'doRNG', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lubridate', 'profvis', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'ggplot2', 'networkD3', 'DescTools', 'fdatest', 'spam',
  'qpdf'

Packages suggested but not available for checking:
  'devtools', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'leaflet', 'ggplot2', 'tidyr', 'httpcache', 'mapedit', 'sf',
  'stringr', 'xml2', 'memoise'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'reshape2', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BayesTools', 'runjags', 'rjags', 'scales', 'ggplot2'

Packages suggested but not available for checking:
  'metaBMA', 'weightr', 'lme4', 'fixest', 'testthat', 'vdiffr',
  'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'robmed', 'shiny', 'DT', 'flextable', 'ggplot2', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fastGHQuad', 'Rcpp', 'doRNG'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'robust', 'dplyr', 'scales', 'gplots', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'usethis', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'RcppDist'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plm', 'dplyr', 'ggplot2', 'broom', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'crul', 'RcppSimdJson', 'dplyr', 'tidyr', 'stringi', 'dm',
  'labelled', 'readr'

Packages suggested but not available for checking:
  'roxygen2', 'devtools', 'vcr', 'testthat', 'covr', 'rmarkdown',
  'DiagrammeR', 'DiagrammeRsvg', 'sf', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'spiderbar', 'future', 'future.apply'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgenoud’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GSE’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BayesTools', 'rjags', 'runjags', 'scales'

Packages suggested but not available for checking:
  'ggplot2', 'flexsurv', 'testthat', 'vdiffr', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'rmarkdown', 'readr', 'dplyr', 'tidyr', 'lubridate', 'stringr'

Package which this enhances but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rrcov’

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'cellWise', 'glmnet', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'mvnfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'RcppParallel', 'BayesTools',
  'bridgesampling', 'ggplot2', 'StanHeaders', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
checkRd: (-1) predict.robu.Rd:36-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:43-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:50-55: Lost braces in \itemize; meant \describe ?
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'exactci', 'ivreg'

Packages suggested but not available for checking:
  'covr', 'doFuture', 'doRNG', 'future', 'ggplot2', 'ivgets',
  'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘PEIP’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'robust', 'ggplot2', 'GGally', 'reshape2'

Packages which this enhances but not available for checking:
  'rrcov', 'Hmisc'
Note: skipping ‘lmrob_simulation.Rnw’ due to unavailable dependencies:
  'ggplot2', 'GGally', 'reshape2'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘rjags’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rmpfr', 'miscTools'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'lme4', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘devtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RobustGaSP', 'nloptr', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'caret', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rrcov’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'nloptr', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'perry', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'igraph', 'intervals', 'CVXR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'lme4', 'Rcpp', 'fastGHQuad'

Packages suggested but not available for checking:
  'ggplot2', 'reshape2', 'rlme', 'lemon', 'fs', 'dplyr', 'ggh4x',
  'testthat', 'robustvarComp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'dplyr', 'ggnewscale', 'ggplot2', 'ggrepel',
  'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘copula’
Packages required but not available: 'gmp', 'iterpc', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rrcov’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'robreg3S', 'GSE'

Package suggested but not available for checking: ‘systemfit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GSE', 'robust', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘pcaPP’

Package which this enhances but not available for checking: ‘ICS’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'tidyr', 'scales'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'doRNG', 'dplyr', 'ggplot2', 'ggridges', 'glmnet', 'lares',
  'lubridate', 'nloptr', 'patchwork', 'prophet', 'reticulate',
  'stringr', 'tidyr'

Package suggested but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'mockery', 'rmarkdown', 'ROCR', 'pROC'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘formattable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ROCR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'pROC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Objects in \usage without \alias in Rd file 'gettptnfpfn-defunct.Rd':
  ‘gettptnfpfn’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'lme4', 'kutils'

Packages suggested but not available for checking:
  'tables', 'Hmisc', 'car', 'HH'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'RMariaDB', 'testthat', 'rmarkdown', 'RPostgres', 'RSQLite'
Running examples in ‘rocker-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: appendTable
> ### Title: Append data to table.
> ### Aliases: appendTable
> 
> ### ** Examples
> 
> db <- rocker::newDB()
dctr | New object 
> rocker::setupSQLite(db)
Error: Package RSQLite not installed
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'rgl', 'EBImage'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'data.tree', 'dplyr', 'DiagrammeR', 'DiagrammeRsvg', 'ggplot2',
  'htmltools'

Packages suggested but not available for checking:
  'covr', 'googlesheets4', 'haven', 'justifier', 'openxlsx',
  'pdftools', 'preregr', 'readxl', 'rmarkdown', 'rvest', 'striprtf',
  'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'tidyr', 'stringr', 'roxygen2'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'np', 'spatstat.geom', 'spatstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reportROC', 'pROC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gplots’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘svmpath’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DiagrammeR', 'data.tree', 'ggplot2', 'flexsurv', 'Rcpp',
  'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2', 'dplyr', 'tidyr', 'covr',
  'scales'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'fda.usc', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'Rfast', 'TreeDist', 'TreeTools'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘Rglpk’
Package required but not available: ‘Rglpk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘Rglpk’
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rglpk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘highs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘kernlab’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘ROI.plugin.glpk’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'xmlrpc2', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nloptr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘optimx’

Packages suggested but not available for checking:
  'minqa', 'lbfgsb3c', 'lbfgs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘osqp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rsymphony’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) ROI_plugin_build_equality_constraints.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_equality_constraints.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:29: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_solve.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:28-30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dm', 'dplyr', 'readr', 'sf', 'snakecase', 'starschemar', 'tidyr',
  'when'

Packages suggested but not available for checking:
  'dbplyr', 'DiagrammeR', 'DiagrammeRsvg', 'lubridate', 'pander',
  'pivottabler', 'RMariaDB', 'rmarkdown', 'RSQLite', 'stringr',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'htmltools', 'bookdown'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ldaPrototype', 'lubridate', 'tosca'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ggplot2', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'rswipl'

Packages suggested but not available for checking:
  'rmarkdown', 'rswipl', 'DiagrammeR', 'DiagrammeRsvg', 'htmltools',
  'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘scales’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'stringr', 'magick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'readr', 'reshape2', 'shiny', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'plotly', 'rmarkdown', 'usethis', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Lmoments’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'animation', 'rARPACK', 'igraph'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'fs', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'rmarkdown'
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'testthat', 'dplyr'
'LazyData' is specified without a 'data' directory
Running ‘someFIGIs.R’ [1s/1s]
Running the tests in ‘tests/someFIGIs.R’ failed.
Complete output:
  > library(ROpenFIGI)
  > jsondf <- data.frame(idType=c("ID_ISIN"),idValue=c("US922646AS37"),
  +                      exchCode=c(NA),currency=NA,micCode=NA,stringsAsFactors = F)
  > 
  > jsonrst <- OpenFIGI(jsondf)
  > jsonrst
  [[1]]
            figi                  name             ticker exchCode compositeFIGI
  1 BBG00004SPH6 REPUBLIC OF VENEZUELA VENZ 9.25 09/15/27  EUROTLX            NA
    uniqueID securityType marketSector shareClassFIGI uniqueIDFutOpt
  1       NA       GLOBAL         Govt             NA             NA
    securityType2 securityDescription
  1          Govt VENZ 9 1/4 09/15/27
  
  > 
  > library(dplyr)
  Error in library(dplyr) : there is no package called 'dplyr'
  Execution halted
Package required but not available: ‘RJSONIO’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'rmarkdown', 'prettydoc', 'rvest'
Packages required but not available:
  'RSelenium', 'dplyr', 'haven', 'readr', 'rio', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fastdigest', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'crul', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'rcrossref', 'handlr', 'httpuv', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'car', 'ggplot2', 'ggrepel', 'lme4', 'pander', 'plyr', 'rmdpartials',
  'ufs', 'lmerTest', 'sjstats', 'kableExtra'

Packages suggested but not available for checking:
  'downlit', 'GGally', 'jmvcore', 'MBESS', 'pkgdown', 'rio',
  'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'geojsonsf', 'sf'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘wk’

Packages suggested but not available for checking:
  'plyr', 'raster', 'testthat', 'sf', 'terra', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mrfDepth', 'pcaPP', 'rrcov', 'rrcovHD'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'furrr', 'memoise'

Packages suggested but not available for checking:
  'httptest2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'rncl'

Packages suggested but not available for checking:
  'MCMCglmm', 'phylobase', 'readxl', 'rmarkdown', 'RNeXML', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'digest', 'rmarkdown', 'testthat', 'ulid'
Running examples in ‘rotor-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Cache
> ### Title: An R6 class for managing a persistent file-based cache
> ### Aliases: Cache
> 
> ### ** Examples
> 
> 
> ## ------------------------------------------------
> ## Method `Cache$new`
> ## ------------------------------------------------
> 
> td <- file.path(tempdir(), "cache-test")
> 
> # When using a real hash function as hashfun, identical objects will only
> # be added to the cache once
> cache_hash <- Cache$new(td, hashfun = digest::digest)
creating directory '/tmp/RtmpRlp1mn/cache-test'
Error in loadNamespace(x) : there is no package called ‘digest’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'igraph', 'graphlayouts', 'htmlwidgets'

Package suggested but not available for checking: ‘pagedown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'sf'

Package suggested but not available for checking: ‘pagedown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geometry', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'magick'
Packages suggested but not available for checking: 'gmp', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reqres', 'stringi', 'digest'

Packages suggested but not available for checking:
  'testthat', 'covr', 'fiery'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘roxygen2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'devtools', 'usethis'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'pkgload', 'stringi', 'stringr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘roxygen2’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘roxygen2’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'tidyr', 'ggpubr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'scales', 'shiny'

Packages suggested but not available for checking:
  'covr', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ipmr', 'ggplot2', 'rmarkdown'

Packages suggested but not available for checking:
  'covr', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'terra'

Packages suggested but not available for checking:
  'covr', 'mockery', 'raster', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'picante', 'bipartite', 'fields', 'fpc', 'igraph', 'mvMORPH',
  'phytools', 'raster', 'Rmpfr', 'GUniFrac', 'TESS'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rgl', 'RandomFields', 'interp', 'ggplot2'
checkRd: (-1) Clyde.Rd:8: Lost braces
     8 | These data record the water quality, in terms of dissolved oxygen (\code{DO}) on a percentage scale, at a number of sampling stations (\code{Station}) on the River Clyde.  The date (\code{Day}, \\code{Month}, \code{Year}) is also available, along with the day of the year (\code{Doy} between 1 and 365) and an identified (\code{id}) of the survey on which each measurement was made.
       |                                                                                                                                                                                                         ^
checkRd: (-1) rp.pos.Rd:22-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:25-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:28-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:31-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:43: Lost braces in \itemize; meant \describe ?
Packages required but not available: 'xml2', 'Seurat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) prp.Rd:565: Lost braces
   565 |      The border is by default invisible, see code{split.border.col}.
       |                                                  ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'Rcpp', 'rstan', 'rstantools', 'RcppEigen',
  'RcppParallel', 'StanHeaders'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'xml2', 'stringr', 'bio3d'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'testthat'
Running examples in ‘rpdo-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pdo
> ### Title: Pacific Decadal Oscillation Index
> ### Aliases: pdo
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(rpdo)
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'ptw'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RPEIF', 'RcppEigen'

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RobStatTM’

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RPEIF', 'RPEGLMEN', 'RobStatTM'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'ggplot2', 'reshape2', 'mirt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'raster', 'Rcpp', 'spatstat.geom', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'Rcpp', 'doBy', 'phylolm', 'phytools', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'rmarkdown', 'covr', 'phytools', 'palaeoverse',
  'ggtree', 'ape', 'deeptime', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjson’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'testthat', 'htmltools', 'rmarkdown', 'devtools', 'dplyr'

Package which this enhances but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pcaPP’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rbacon’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) plotImage.blcTree.Rd:17: Lost braces
    17 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
checkRd: (-1) plotImage.glcTree.Rd:16: Lost braces
    16 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'tidyr', 'testthat', 'covr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This is a wrapper around all the tests specified
  > # in the tests/testthat directory. These tests are visible
  > # to users and serve as small examples as well.
  > testthat::test_check("rpmodel")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'future', 'doRNG', 'Rcpp', 'nloptr', 'dplyr', 'ggplot2', 'doFuture',
  'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘test-all.R’ [0s/1s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > #' @import testthat
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'stringr'
checkRd: (-1) get.poetry.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{output}{Can be any or a combination of the input terms {'author', 'title', 'lines', 'linecount'}. If NULL, all
       |                                                              ^
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'geometry', 'rgl', 'stringr', 'digest'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'pkgdown', 'rmarkdown', 'covr', 'codemetar'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rpoppler.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘spelling’
Packages required but not available: 'terra', 'sf', 'raster'

Packages suggested but not available for checking: 'RPostgres', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking:
  'covr', 'DBItest', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'gplots', 'ggplot2', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘imager’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'readr', 'dygraphs'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'DT', 'dygraphs', 'shiny'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'dplyr', 'igraph'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringi', 'dplyr', 'dbplyr', 'lubridate'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'tidyr'

Packages suggested but not available for checking:
  'flexsurv', 'flexsurvcure', 'rmarkdown', 'rms', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'stringi', 'stringr'

Packages suggested but not available for checking:
  'covr', 'readr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringi’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'viridis', 'ggplot2', 'mixtools', 'plotROC', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'mlogit', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'plyr', 'sqldf', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package which this enhances but not available for checking: ‘pkgload’
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'rjson'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tableone'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rpymat', 'reticulate', 'RNifti'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reticulate', 'sf', 'raster', 'stringr', 'rmarkdown'

Packages suggested but not available for checking: 'testthat', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'fastmap', 'IRkernel'

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'RSQLite'
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'roxygen2'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'hrqglas', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rgl', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'meteor', 'Rcpp'

Package suggested but not available for checking: ‘terra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'RSQLite', 'igraph', 'rmarkdown'
checkRd: (-1) ex.Rd:20: Lost braces
    20 | Execute a ops-dag using `code{wrap()}` data as values.
       |                              ^
checkRd: (-1) sql_node.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{expand_braces}{logical if TRUE use {col} notation to ensure {col} is a column name.}
       |                                          ^
checkRd: (-1) sql_node.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{expand_braces}{logical if TRUE use {col} notation to ensure {col} is a column name.}
       |                                                                   ^
Packages required but not available: 'lme4', 'phylolm', 'ape', 'phyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following files/directories:
  ‘HL_H0.pdf’ ‘pi0infer.pdf’ ‘rate.txt’ ‘summary.txt’
Package required but not available: ‘warbleR’

Packages suggested but not available for checking:
  'dplyr', 'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘RobStatTM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rrcov’

Packages suggested but not available for checking:
  'ggplot2', 'reshape2', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rrcov', 'pcaPP', 'robustHD', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rrcov’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pcaPP’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘crul’

Packages suggested but not available for checking: 'testthat', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘readr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lhs', 'sensitivity', 'ggplot2', 'digest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'flextable', 'labelled', 'officer', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'kernlab'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mc2d’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'bayesm', 'rrpack', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Argument items with no description in Rd file 'RNAPlot.Rd':
  ‘seqTF’
Argument items with no description in Rd file 'aptPlotCT.Rd':
  ‘seqTF’
Found the following files/directories:
  ‘test.bpl’ ‘test.cr’ ‘test.ct’
Package required but not available: ‘ape’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'biwavelet'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'glmnet', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'phytools'

Packages suggested but not available for checking:
  'phangorn', 'scales', 'car', 'picante', 'ddpcr', 'geomorph',
  'rmarkdown', 'kableExtra', 'pdftools', 'rgl', 'mvMORPH', 'ggplot2',
  'qpdf', 'Rvcg', 'Morpho', 'evolqg', 'Rphylopars', 'phylolm',
  'webshot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘arm’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Packages suggested but not available for checking: 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'ggplot2', 'plotly', 'GGally'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nloptr’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'R.cache', 'digest'

Package suggested but not available for checking: ‘ascii’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'ggplot2', 'officer', 'flextable', 'rvg', 'devEMF',
  'moonBook', 'rmarkdown', 'shiny', 'editData', 'shinyWidgets',
  'ggpubr', 'readr', 'ztable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'simcdm', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
checkRd: (-1) makedata.Rd:35: Lost braces; missing escapes or markup?
    35 |         {e = (1-h)*N(0, ve) + h*N(0, ve.contam)}.}
       |         ^
Package vignette without corresponding tangle output:
  ‘rsae.Rmd’
Errors in running code in vignettes:
when running code in ‘rsae.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘rsae.Rmd’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'DALEX', 'dendextend', 'ggplot2', 'ggpubr', 'ingredients'

Packages suggested but not available for checking:
  'gbm', 'pander', 'rmarkdown', 'spelling', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'terra', 'stars', 'stringr', 'rvest'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gstat', 'plyr', 'stringr'

Packages suggested but not available for checking:
  'sf', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'furrr', 'slider', 'tidyr'

Packages suggested but not available for checking:
  'broom', 'covr', 'ggplot2', 'modeldata', 'recipes', 'rmarkdown',
  'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'ggplot2', 'plyr'

Packages suggested but not available for checking:
  'fields', 'rgl', 'qgraph', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leafem', 'leaflet', 'rjson', 'rvest', 'tmap', 'xml2', 'fields',
  'calendR', 'sf', 'stars', 'terra', 'raster'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'sf'
Package required but not available: ‘xml2’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'xml2', 'reshape2', 'lubridate', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) rSCA.modeling.Rd:61: Lost braces; missing escapes or markup?
    61 | 		a predefined string to specify how the information of leaf nodes will be stored in the map file. A full list of options for mapvalue is: {mean, max, min, median, interval, radius, variation, random}. Default value is "mean". Use "interval" to get an interval bounded by the minimum and maximum values, (i.e., [min, max]). The option of "radius" will output the mean and the radius [i.e., (max - min) / 2] at the same time. Use "variation" to output the mean and the standard deviation. The option of "random" will output the information as an interval like the "interval" option, but it will use a random value within the interval as the predicted value.
       |                                                                                                                                                          ^
Packages required but not available:
  'shiny', 'shinycssloaders', 'shinyjs', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'highlight', 'igraph', 'tm'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'igraph', 'rmarkdown', 'stringr', 'seqinr', 'spelling'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'rsconnect', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Packages suggested but not available for checking:
  'plumber', 'quarto', 'reticulate', 'rmarkdown', 'shiny', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'plyr', 'tidyr', 'dplyr'

Packages suggested but not available for checking:
  'xml2', 'rvest', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'scales', 'stringr', 'RJSONIO', 'ggplot2', 'ggpolypath',
  'reshape', 'glmnet', 'FactoMineR', 'princurve', 'nloptr', 'sqldf',
  'randomcoloR', 'kknn', 'e1071', 'gbm', 'umap', 'plotly', 'ggrepel'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rsdepth.Rcheck/00install.out’ for details.
Packages required but not available:
  'testthat', 'shiny', 'shinyWidgets', 'keys'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'hommel', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'caTools', 'wdman'

Packages suggested but not available for checking:
  'binman', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
GNU make is a SystemRequirements.
Note: information on .o files is not available
File ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rserve/libs/Rserve.so’:
  Found ‘exit’, possibly from ‘exit’ (C)
  Found ‘rand’, possibly from ‘rand’ (C)
  Found ‘random’, possibly from ‘random’ (C)
  Found ‘srandom’, possibly from ‘srandom’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
File ‘Rserve/libs/Rserve.so’:
  Found non-API calls to R: ‘R_Consolefile’, ‘R_InputHandlers’,
    ‘R_Outputfile’, ‘R_TempDir’, ‘R_Visible’, ‘addInputHandler’,
    ‘ptr_R_Busy’, ‘ptr_R_ClearerrConsole’, ‘ptr_R_FlushConsole’,
    ‘ptr_R_ReadConsole’, ‘ptr_R_ResetConsole’, ‘ptr_R_ShowMessage’,
    ‘ptr_R_WriteConsole’, ‘ptr_R_WriteConsoleEx’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages required but not available: 'dplyr', 'igraph'

Packages suggested but not available for checking:
  'rmarkdown', 'tidyr', 'ggplot2', 'ggraph', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'bookdown', 'usethis', 'ymlthis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'sf', 'testthat', 'wk'
Packages required but not available: 'ggplot2', 'stringi', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RSQLite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RSiena.Rcheck/00install.out’ for details.
Packages required but not available: 'fields', 'RANN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggridges', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'covr', 'devtools', 'dplyr', 'rmarkdown', 'rstpm2', 'testthat',
  'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'dplyr', 'lubridate'

Packages suggested but not available for checking:
  'aire.zmvm', 'testthat', 'covr', 'rmarkdown', 'ggplot2', 'ggmap',
  'gstat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future.apply', 'sf', 'terra'

Packages suggested but not available for checking:
  'progressr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'ggplot2', 'psd', 'xml2', 'readr'

Packages suggested but not available for checking:
  'caret', 'keras', 'reshape2', 'rmarkdown', 'testthat', 'RSQLite',
  'SleepCycles', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'stringi', 'plyr', 'tokenizers'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'gurobi', 'nbpMatching', 'Rglpk', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Package suggested but not available for checking: ‘mlxR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'DoE.base', 'FrF2'
Packages required but not available: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘NeuralNetTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘memoise’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'restfulr', 'rjson'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kohonen', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘editrules’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'sf', 'geosphere', 'tigris', 'raster', 'plyr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

Packages suggested but not available for checking: 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'MatrixExtra', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'fmesher', 'broom'

Packages suggested but not available for checking:
  'rmarkdown', 'INLA', 'testthat', 'ggplot2', 'RSpectra', 'inlabru',
  'viridis', 'scoringRules', 'tidyr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'igraph', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Running ‘tinytest.R’ [0s/1s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > tmp_user_dir <- tempdir()
  > Sys.setenv(RSPM_USER_DIR=tmp_user_dir)
  > 
  > if (requireNamespace("tinytest", quietly=TRUE)) {
  +   home <- identical(Sys.getenv("CI"), "true")
  +   tinytest::test_package("rspm", at_home=home)
  + }
   You are using 'tinytest::' to express test expectations.
   The results from these tests are not collected. Found the following occurrences:
   > test_integration.R#002: tinytest::expect_match 
   Remove the 'tinytest::' prefix to register the test results.FALSE
  
  test_integration.R............    0 tests    
  test_integration.R............    1 tests [0;32mOK[0m 
  test_integration.R............    2 tests [0;32mOK[0m 
  test_integration.R............    2 tests [0;32mOK[0m 
  test_integration.R............    3 tests [0;32mOK[0m Error: please, install the following required utilities: apt-file
  Execution halted
Packages required but not available: 'dplyr', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'igraph', 'tidyr', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'MVN', 'ShinyItemAnalysis', 'gt', 'igraph', 'mirt', 'plyr',
  'ggplot2', 'semPlot', 'shinyBS', 'shinyWidgets', 'scales',
  'shinycustomloader', 'shinyjs', 'shinythemes', 'shiny'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'tidyr', 'scales'
Running examples in ‘rsprite2-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_distributions
> ### Title: Plot distributions
> ### Aliases: plot_distributions
> 
> ### ** Examples
> 
> sprite_parameters <- set_parameters(mean = 2.2, sd = 1.3, n_obs = 20,
+                                     min_val = 1, max_val = 5)
> 
> poss <- find_possible_distributions(sprite_parameters, 5, seed = 1234)
> 
> # All distributions in same plot
> plot_distributions(poss, plot_type = "ecdf")
Error: Some required packages are not installed. Make sure you have
               these packages: tidyr, ggplot2
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘memoise’

Packages suggested but not available for checking:
  'DBItest', 'rmarkdown', 'rvest', 'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'stringi'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'RSQLite', 'RPostgres', 'rmarkdown', 'dplyr', 'testthat', 'covr',
  'lintr', 'pkgdown'
Running examples in ‘RSQL-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: RSQL
> ### Title: rsql
> ### Aliases: RSQL .onLoad RSQL-package
> 
> ### ** Examples
> 
> library(RSQL)
> library(RSQLite)
Error in library(RSQLite) : there is no package called ‘RSQLite’
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'SIS', 'GMMAT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'janitor', 'ggplot2', 'stringr', 'ggrepel', 'gplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘forecast’

Packages suggested but not available for checking:
  'testthat', 'RSpectra', 'PRIMME'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'kernlab', 'dplyr', 'tidyr', 'ggplot2', 'reshape2', 'scales',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'LiblineaR', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘huxtable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'sf', 'rmarkdown', 'dplyr', 'slider', 'leaflet', 'tmap',
  'stars', 'ggplot2', 'geojsonsf'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'bayesplot', 'ggplot2', 'lme4', 'posterior', 'rstan',
  'rstantools', 'shinystan', 'RcppParallel', 'StanHeaders', 'RcppEigen'

Packages suggested but not available for checking:
  'digest', 'rmarkdown', 'roxygen2', 'StanHeaders', 'testthat',
  'gamm4', 'shiny', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'dplyr', 'tidyr', 'ggplot2',
  'StanHeaders', 'RcppEigen', 'RcppParallel'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'StanHeaders', 'Rcpp', 'RcppParallel', 'QuickJSR', 'ggplot2',
  'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'shinystan', 'bayesplot', 'rmarkdown', 'rstantools', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking:
  'rstan', 'usethis', 'testthat', 'pkgload', 'roxygen2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'tidyr', 'broom', 'dplyr', 'car'

Packages suggested but not available for checking:
  'rmarkdown', 'ggpubr', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'sf', 'terra', 'dplyr', 'ggplot2', 'tidyr', 'reshape2',
  'exactextractr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'kernlab', 'e1071', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'fastGHQuad', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'readstata13', 'scales', 'survPen',
  'flexsurv', 'timereg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'geosphere', 'ggplot2', 'ggspatial', 'googleway', 'plyr',
  'prettymapr', 'rvest', 'tidyr', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'
Packages required but not available: 'dplyr', 'fs', 'rvest'

Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'epiR', 'mc2d'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library('testthat')
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'pcaMethods'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ggplot2', 'testthat'
Running examples in ‘rsvd-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rpca
> ### Title: Randomized principal component analysis (rpca).
> ### Aliases: rpca
> 
> ### ** Examples
> 
> 
> library('rsvd')
> #
> # Load Edgar Anderson's Iris Data
> #
> data('iris')
> 
> #
> # log transform
> #
> log.iris <- log( iris[ , 1:4] )
> iris.species <- iris[ , 5]
> 
> #
> # Perform rPCA and compute only the first two PCs
> #
> iris.rpca <- rpca(log.iris, k=2)
> summary(iris.rpca) # Summary
                         PC1   PC2
Explained variance     2.933 0.907
Standard deviations    1.712 0.952
Proportion of variance 0.733 0.227
Cumulative proportion  0.733 0.960
> print(iris.rpca) # Prints the rotations
Standard deviations:
[1] 1.712 0.952

Eigenvalues:
[1] 2.933 0.907

Rotation:
                PC1    PC2
Sepal.Length -0.504 -0.455
Sepal.Width   0.302 -0.889
Petal.Length -0.577 -0.034
Petal.Width  -0.567 -0.035
> 
> #
> # Use rPCA to compute all PCs, similar to \code{prcomp}
> #
> iris.rpca <- rpca(log.iris)
> summary(iris.rpca) # Summary
                         PC1   PC2   PC3   PC4
Explained variance     2.933 0.907 0.133 0.027
Standard deviations    1.712 0.952 0.365 0.166
Proportion of variance 0.733 0.227 0.033 0.007
Cumulative proportion  0.733 0.960 0.993 1.000
> print(iris.rpca) # Prints the rotations
Standard deviations:
[1] 1.712 0.952 0.365 0.166

Eigenvalues:
[1] 2.933 0.907 0.133 0.027

Rotation:
                PC1    PC2    PC3    PC4
Sepal.Length  0.504 -0.455  0.709  0.191
Sepal.Width  -0.302 -0.889 -0.331 -0.091
Petal.Length  0.577 -0.034 -0.219 -0.786
Petal.Width   0.567 -0.035 -0.583  0.580
> plot(iris.rpca) # Produce screeplot, variable and individuls factor maps.
Error: The package 'ggplot2' is needed for this function to work. Please install it.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'ggplot2', 'magick', 'rmarkdown', 'spelling', 'svglite', 'testthat'
Running examples in ‘rsvg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rsvg
> ### Title: Render SVG into Bitmap
> ### Aliases: rsvg rsvg_raw rsvg_nativeraster rsvg_webp rsvg_png rsvg_pdf
> ###   rsvg_svg rsvg_ps rsvg_eps
> 
> ### ** Examples
> 
> # create some svg
> options(example.ask=FALSE)
> tmp <- tempfile()
> svglite::svglite(tmp, width = 10, height = 7)
Error in loadNamespace(x) : there is no package called ‘svglite’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘engine.R’ [0s/0s]
  Comparing ‘engine.Rout’ to ‘engine.Rout.save’ ...4d3
< Linking to librsvg 2.54.7
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = FALSE)
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rsymphony.Rcheck/00install.out’ for details.
Packages required but not available: 'RSQLite', 'terra'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'Rcpp', 'rmarkdown', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'stringi', 'digest', 'tokenbrowser'

Package suggested but not available for checking: ‘testthat’

Package which this enhances but not available for checking: ‘spacyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘partitions’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'formatters', 'htmltools', 'stringi'

Packages suggested but not available for checking:
  'broom', 'car', 'dplyr', 'flextable', 'officer', 'testthat', 'tidyr',
  'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'phytools', 'ape', 'distory', 'paco', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'testthat'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) RTDE.Rd:78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) RTDE.Rd:79: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'tidyr', 'latticeExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readr', 'dplyr', 'RcppMsgPack', 'urltools'

Packages suggested but not available for checking:
  'testthat', 'mockery', 'webmockr', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tm', 'FactoMineR', 'explor', 'testthat', 'wordcloud', 'igraph',
  'stringi', 'tm.plugin.factiva', 'tm.plugin.lexisnexis',
  'tm.plugin.europresse', 'tm.plugin.alceste'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rmarkdown', 'bookdown', 'DT', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gsignal’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rNOMADS’
Packages suggested but not available for checking:
  'covr', 'testthat', 'spelling'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'tm', 'e1071', 'ipred', 'caTools', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘ggplot2’
Error(s) in re-building vignettes:
  ...
--- re-building ‘rtf.Rnw’ using Sweave

Error: processing vignette 'rtf.Rnw' failed with diagnostics:
 chunk 29 
Error in library(ggplot2) : there is no package called ‘ggplot2’

--- failed re-building ‘rtf.Rnw’

SUMMARY: processing the following file failed:
  ‘rtf.Rnw’

Error: Vignette re-building failed.
Execution halted
Found the following files/directories:
  ‘test_addPageBreak.doc’ ‘test_addPlot.doc’ ‘test_addSessionInfo.doc’
  ‘test_addTable.doc’
Packages required but not available: 'ggplot2', 'dplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'snakecase', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'badger', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking:
  'bookdown', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'readr', 'tidymv', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rmarkdown', 'bookdown', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'scales', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'DataCombine', 'DescTools', 'dplyr', 'ggplot2', 'interactions',
  'lme4', 'plyr'

Packages suggested but not available for checking:
  'devtools', 'rmarkdown', 'sjmisc', 'sjPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'e1071', 'extraDistr', 'reshape2', 'ggplot2', 'JuliaCall', 'qpdf'

Packages suggested but not available for checking:
  'rmarkdown', 'Gviz', 'rtracklayer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Packages suggested but not available for checking:
  'xml2', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gt', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'plotly', 'readr', 'stringr',
  'tidyr', 'timetk', 'tsibble', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rugarch', 'tidyquant', 'feasts', 'fabletools',
  'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'hexSticker', 'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'ggplot2', 'lidR', 'keras', 'reticulate', 'rgl', 'sf',
  'tensorflow'

Packages suggested but not available for checking: 'terra', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'TMB', 'RcppEigen'

Packages suggested but not available for checking: 'rmarkdown', 'igraph'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Ryacas', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gstat', 'sf', 'units'

Packages suggested but not available for checking:
  'intamap', 'spacetime', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'broom', 'car', 'ggplot2', 'ggrepel', 'nls.multstart', 'patchwork',
  'rmarkdown', 'stringr', 'testthat', 'tidyverse'
Running examples in ‘rTPC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bacteria_tpc
> ### Title: Example thermal performance curves of bacterial growth
> ### Aliases: bacteria_tpc
> ### Keywords: dataset
> 
> ### ** Examples
> 
> data("bacteria_tpc")
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Hmisc', 'openxlsx', 'readxl', 'rjson', 'scales', 'stringi', 'terra'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'future.apply', 'Rcpp'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'xml2', 'rvest', 'ggplot2', 'memoise', 'tidyr', 'downloader'

Packages suggested but not available for checking:
  'lubridate', 'testthat', 'rmarkdown', 'leaflet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'lubridate', 'terra', 'plyr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lubridate', 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'geometry'
Running ‘attributes.R’ [0s/1s]
  Comparing ‘attributes.Rout’ to ‘attributes.Rout.save’ ... OK
  Running ‘basic.R’ [0s/0s]
  Comparing ‘basic.Rout’ to ‘basic.Rout.save’ ... OK
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
checkRd: (-1) read_vcv.Rd:10: Lost braces
    10 | \item{file}{\\code{[character]} filename}
       |                   ^
Documented arguments not in \usage in Rd file 'summary.trimbatch.Rd':
  ‘x’

Documented arguments not in \usage in Rd file 'trim_workhorse.Rd':
  ‘max_beta’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Errors in running code in vignettes:
when running code in ‘Skylark_example.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘rtrim_2_extensions.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘rtrim_confidence_intervals.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘rtrim_for_TRIM_users.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘taming_overdispersion.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘Skylark_example.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘rtrim_2_extensions.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘rtrim_confidence_intervals.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘rtrim_for_TRIM_users.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘taming_overdispersion.Rmd’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking:
  'covr', 'R.rsp', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'Rfast', 'RcppAlgos', 'caret'

Packages suggested but not available for checking:
  'rmarkdown', 'e1071', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'sf', 'lubridate',
  'RcppEigen', 'StanHeaders', 'glmmrBase', 'SparseChol'

Packages suggested but not available for checking: 'cmdstanr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales', 'Rcpp'

Packages suggested but not available for checking:
  'gsDesign', 'CompQuadForm', 'dplyr', 'kableExtra', 'rmarkdown',
  'bookdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘bookdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘anytime’

Package suggested but not available for checking: ‘RQuantLib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'terra', 'raster'

Packages suggested but not available for checking: 'digest', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'testthat', 'lubridate', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'testthat', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following files/directories:
  ‘Tsttwalk.dat’
Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'httpuv', 'igraph', 'magick',
  'rmarkdown', 'spelling', 'testthat', 'vcr'
Packages required but not available: 'dplyr', 'lubridate', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'Rcpp', 'readr', 'stringr', 'tidyr', 'RcppParallel'

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ks', 'Rcpp', 'nloptr', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘udpipe’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'keyholder', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'parsnip', 'dials', 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'C50', 'covr', 'Cubist', 'modeldata', 'recipes', 'rmarkdown',
  'spelling', 'testthat', 'xrf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'maxLik', 'highfrequency', 'roll', 'lubridate'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'dplyr', 'DT', 'flextable', 'formods', 'ggplot2',
  'onbrand', 'PKNCA', 'plotly', 'rhandsontable', 'shiny', 'shinyAce',
  'shinyWidgets', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'nlmixr2lib', 'nonmem2rx', 'prompter', 'rmarkdown', 'readxl',
  'rxode2', 'shinydashboard', 'testthat', 'ubiquity'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bookdown', 'conflicted', 'rmarkdown', 'table1', 'tidyverse',
  'usethis'

Package suggested but not available for checking: ‘tidymodels’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'pkgdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'xml2', 'rvest'
Running examples in ‘runexp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: scrape
> ### Title: Softball Webscraper
> ### Aliases: scrape
> 
> ### ** Examples
> 
> url <-"https://wmubroncos.com/sports/softball/stats/2019"
> test <- scrape(url)
Error: Package "rvest" needed for this function to work. Please install it.
Execution halted
checkRd: (-1) tracker.Rd:70: Escaped LaTeX specials: \&
checkRd: (-1) tracker.Rd:73: Escaped LaTeX specials: \&
S3 methods shown with full name in Rd file 'printHTML.trackinfo.Rd':
  ‘printHTML.trackInfo’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Found the following files/directories:
  ‘results’
Packages suggested but not available for checking:
  'rjags', 'testthat', 'spelling'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/runjags.Rcheck/00install.out’ for details.
Packages suggested but not available for checking:
  'nimble', 'rjags', 'runjags', 'greta', 'tensorflow', 'ggmcmc',
  'rstan', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘urltools’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'testthat', 'ggplot2', 'rmarkdown', 'cowplot', 'spelling'
'LazyData' is specified without a 'data' directory
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘run_testthat.R’ [0s/1s]
  Running ‘test_advanced.R’ [3s/3s]
  Running ‘test_deprecated.R’ [1s/1s]
  Running ‘test_distributions_cont.R’ [5s/6s]
  Running ‘test_distributions_discr.R’ [1s/1s]
  Running ‘test_routines.R’ [0s/1s]
  Running ‘test_ud.R’ [2s/2s]
  Running ‘test_universal.R’ [9s/10s]
  Running ‘test_unuran.R’ [7s/7s]
Running the tests in ‘tests/run_testthat.R’ failed.
Complete output:
  > ## Load package 'testthat' 
  > if(! require("testthat", quietly=TRUE)) {
  +   message("\nCannot run unit tests -- package 'testthat' is not available!\n")
  + }
  
  Cannot run unit tests -- package 'testthat' is not available!
  
  > 
  > ## run testthat tests
  > test_check("Runuran", reporter=c("summary","check","fail"))
  Error in test_check("Runuran", reporter = c("summary", "check", "fail")) : 
    could not find function "test_check"
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'plyr', 'stringr', 'testthat', 'taxize'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggforce', 'ggplot2', 'reshape2', 'shiny', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'bang', 'revdbayes', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘digest’
Running examples in ‘R.utils-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: touchFile
> ### Title: Updates the timestamp of a file
> ### Aliases: touchFile.default touchFile
> ### Keywords: programming IO file
> 
> ### ** Examples
> 
> # 1. Create a file
> pathname <- tempfile()
> cat(file=pathname, "Hello world!")
> md5a <- digest::digest(pathname, file=TRUE)
Error in loadNamespace(x) : there is no package called ‘digest’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking: 'shiny', 'colourpicker'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ade4', 'car', 'FactoMineR', 'lme4'

Packages suggested but not available for checking:
  'ape', 'FSA', 'glmmTMB', 'labdsv', 'mixOmics', 'RGCCA'

Package which this enhances but not available for checking: ‘glmmADMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                ^
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                                   ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'GSVAdata', 'clusterProfiler', 'edgeR', 'org.Hs.eg.db',
  'ComplexHeatmap', 'GSEABase', 'dplyr', 'ggplot2', 'ggpubr', 'haven',
  'msigdbr', 'plotly', 'rWikiPathways', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen', 'RcppArmadillo'

Packages suggested but not available for checking: 'Morpho', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘yulab.utils’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'bookdown', 'covr', 'dplyr', 'ggdist', 'ggplot2', 'posterior',
  'rmarkdown', 'testthat', 'tidyr', 'vdiffr'
Running examples in ‘rvec-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: collapse_to_rvec
> ### Title: Convert a Data Frame Between 'Database' and 'Rvec' Formats
> ### Aliases: collapse_to_rvec collapse_to_rvec.data.frame
> ###   collapse_to_rvec.grouped_df expand_from_rvec
> ###   expand_from_rvec.data.frame expand_from_rvec.grouped_df
> 
> ### ** Examples
> 
> library(dplyr)
Error in library(dplyr) : there is no package called ‘dplyr’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggforce', 'ggplot2', 'pheatmap'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'stringr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘xml2’

Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'crul', 'dplyr', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'selectr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'readr', 'rmarkdown', 'spelling', 'stringi', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'officer', 'gdtools', 'xml2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘gpuR’
Package suggested but not available for checking: ‘rmarkdown’

Package which this enhances but not available for checking: ‘igraph’
Packages required but not available:
  'kde1d', 'Rcpp', 'RcppEigen', 'RcppThread', 'wdm'

Packages suggested but not available for checking:
  'igraph', 'ggplot2', 'ggraph', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Bessel', 'Rcpp', 'Rfast', 'scModels'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Documented arguments not in \usage in Rd file 'summary.rv.Rd':
  ‘all.levels’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
S3 methods shown with full name in Rd file 'matmult.Rd':
  ‘%*%.rv’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'plotly', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'imager'
checkRd: (-1) HardThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
checkRd: (-1) SoftThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'igraph', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'gt', 'htmltools', 'phonics', 'RecordLinkage',
  'rmarkdown', 'sf', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rWCVPdata', 'testthat', 'spdep'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'feather', 'Rcpp'

Packages suggested but not available for checking:
  'bookdown', 'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra', 'prettydoc', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘e1071’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringi’

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'pryr', 'arm', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'testthat', 'pander'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘marked’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'gdistance', 'lubridate'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sf', 'raster', 'units'

Packages suggested but not available for checking:
  'ggplot2', 'geosphere', 'lwgeom', 'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'meteor', 'Rcpp'

Packages suggested but not available for checking: 'terra', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘badger’

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat', 'htmltools', 'BiocStyle',
  'BiocPkgTools', 'biocViews', 'reticulate', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'raster', 'terra'

Packages suggested but not available for checking: 'classInt', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rworldmap’
Malformed Title field: should not end in a period.
Package required but not available: ‘networkD3’

Packages suggested but not available for checking:
  'cranly', 'findR', 'foghorn', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'geosphere', 'ggplot2', 'reshape2', 'lubridate', 'stringr'

Packages suggested but not available for checking:
  'bfast', 'rmarkdown', 'roxygen2', 'testthat', 'spelling', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'ggplot2', 'reshape2', 'phangorn', 'viridis', 'plyr',
  'ggdendro', 'GGally'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'RJSONIO'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'rxode2random', 'rxode2parse'

Packages suggested but not available for checking:
  'testthat', 'units', 'dplyr', 'qs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dparser', 'qs', 'Rcpp', 'digest', 'symengine', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'devtools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rxode2parse', 'sitmo', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'memoise', 'rxode2ll', 'rxode2et', 'rxode2parse',
  'rxode2random', 'qs', 'RcppArmadillo'

Packages suggested but not available for checking:
  'DT', 'covr', 'digest', 'dplyr', 'ggrepel', 'htmltools', 'learnr',
  'rmarkdown', 'scales', 'shiny', 'stringi', 'symengine', 'testthat',
  'tidyr', 'usethis', 'vdiffr', 'xgxr', 'units', 'rsconnect',
  'devtools', 'patchwork', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) plot.eff.ridge.Rd:6: Lost braces
     6 |  emph{Single Interior Knot} at the MSE Optimal m-Extent of Shrinkage. The
       |      ^
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'xml2'

Packages suggested but not available for checking:
  'devtools', 'exams', 'pkgload', 'rmarkdown', 'igraph', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'devtools', 'exams', 'pkgload', 'rmarkdown', 'igraph', 'testthat',
  'Rmpfr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xml2', 'readr', 'dplyr', 'tidyr', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra', 'googleAnalyticsR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'RJSONIO', 'reshape2'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'gargle', 'snakecase', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'lubridate'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rzmq.Rcheck/00install.out’ for details.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
checkRd: (-1) ciReg.Rd:10: Lost braces
    10 | \item{fit}{an object of class{lm}, i.e. the output from \code{\link{lm}}.}
       |                              ^
Packages required but not available:
  'bigmemory', 'GEOmap', 'plyr', 'SpecsVerification'

Packages suggested but not available for checking:
  'easyVerification', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bigmemory', 'ClimProjDiags', 'plyr', 'multiApply',
  'SpecsVerification', 'easyVerification'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'glmnet', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'wk'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fs', 'future', 'future.apply', 'paws.storage'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fs', 'dplyr', 'aws.signature', 'digest'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'aws.s3', 'sparklyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘biclust’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘RANN’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'raster', 'sf', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

Packages which this enhances but not available for checking:
  'stars', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'Rcpp'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'data.tree', 'Trading'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) BootsChapt.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) SemiparChangePoint.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) schapt.Rd:44: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Package required but not available: ‘DDD’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'shiny', 'testthat', 'ggplot2'
Running ‘run-all.R’ [0s/0s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > # /usr/bin/r
  > #
  > # Copyright 2015-2016 Steven E. Pav. All Rights Reserved.
  > # Author: Steven E. Pav
  > #
  > # This file is part of sadists.
  > #
  > # sadists is free software: you can redistribute it and/or modify
  > # it under the terms of the GNU Lesser General Public License as published by
  > # the Free Software Foundation, either version 3 of the License, or
  > # (at your option) any later version.
  > #
  > # sadists is distributed in the hope that it will be useful,
  > # but WITHOUT ANY WARRANTY; without even the implied warranty of
  > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > # GNU Lesser General Public License for more details.
  > #
  > # You should have received a copy of the GNU Lesser General Public License
  > # along with sadists.  If not, see <http://www.gnu.org/licenses/>.
  > #
  > # Created: 2016.01.04
  > # Copyright: Steven E. Pav, 2016
  > # Author: Steven E. Pav <shabbychef@gmail.com>
  > # Comments: Steven E. Pav
  > 
  > # because Hadley says it should be like this.
  > # see https://github.com/hadley/devtools/wiki/Testing
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘sadists.Rnw’ using knitr

Quitting from lines 401-407 [sumchisqpow] (sadists.Rnw)
Error: processing vignette 'sadists.Rnw' failed with diagnostics:
could not find function "ggplot"
--- failed re-building ‘sadists.Rnw’

SUMMARY: processing the following file failed:
  ‘sadists.Rnw’

Error: Vignette re-building failed.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘GUILDS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

Package suggested but not available for checking: ‘sae’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sae’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjags', 'stringr'

Packages suggested but not available for checking:
  'covr', 'R.rsp', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjags', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'rjags', 'stringr'

Packages suggested but not available for checking:
  'R.rsp', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'rjags'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'rjags', 'nimble', 'CARBayesdata'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'rjags'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'rjags'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'covr'
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'npde', 'ggplot2', 'scales'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fpc’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'aoos', 'ggplot2', 'memoise', 'Rcpp', 'spdep', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'sae', 'saeSim', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'spdep'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'emdi', 'ggplot2', 'openxlsx', 'reshape2', 'HLMdiag', 'stringr',
  'readODS'

Packages suggested but not available for checking:
  'simFrame', 'sf', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'ggplot2', 'ggspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caTools', 'EBImage'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readxl', 'sf', 'igraph'

Packages suggested but not available for checking:
  'rmarkdown', 'ape', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'BiasedUrn', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'torch'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'DT', 'ggplot2', 'htmlwidgets', 'huxtable', 'pharmaRTF',
  'plotly', 'shiny', 'stringr', 'Tendril', 'Tplyr'

Packages suggested but not available for checking:
  'testthat', 'shinytest', 'safetyGraphics'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'datamods', 'htmlwidgets', 'rclipboard',
  'safetyCharts', 'shiny', 'shinyjs', 'sortable', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'shinydashboard', 'shinytest', 'testthat',
  'usethis', 'listviewer', 'shinybusy', 'shinyWidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'formattable', 'fields', 'ggplot2', 'stringr', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'vote'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'prettydoc', 'rmarkdown', 'testthat', 'covr', 'learnr', 'spelling',
  'PMCMRplus', 'devtools', 'DescTools', 'GGally', 'car', 'dplyr',
  'ggiraphExtra', 'scales', 'spatstat', 'FactoMineR', 'caret'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'lowmemtkmeans', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘glmnet’
Running examples in ‘sAIC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sAIC
> ### Title: Compute the Akaike information criterion for the lasso in
> ###   generalized linear models
> ### Aliases: sAIC
> ### Keywords: models regression
> 
> ### ** Examples
> 
> library(MASS)
> library(glmnet)
Error in library(glmnet) : there is no package called ‘glmnet’
Execution halted
Packages required but not available:
  'dplyr', 'readr', 'lubridate', 'anytime', 'xml2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'spelling', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘collapse’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'optimx', 'survey'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'smotefamily', 'e1071', 'ranger', 'pROC', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'raster', 'terra', 'Rcpp', 'RcppEigen', 'RcppThread'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'gdistance'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjags', 'extraDistr', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'mockery', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'pROC', 'nloptr', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'reshape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'maxLik', 'miscTools', 'systemfit'

Package suggested but not available for checking: ‘Ecdat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'TeachingSampling', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'DescTools', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘stringi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘lubridate’

Packages suggested but not available for checking: 'haven', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'lme4'
Note: skipping ‘my-vignette.Rnw’ due to unavailable dependencies: 'lme4'
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘memoise’

Packages suggested but not available for checking:
  'rmarkdown', 'formattable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'RBesT', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'rstanarm', 'scales', 'broom', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinyFiles', 'openxlsx'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'MSEtool', 'TMB', 'dplyr', 'gplots', 'rmarkdown', 'RcppEigen'

Packages suggested but not available for checking:
  'caret', 'covr', 'extraDistr', 'ggplot2', 'Gmisc', 'reshape2',
  'shiny', 'testthat', 'tmbstan', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BART’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Matching’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RLumModel’

Packages suggested but not available for checking:
  'EMMAgeo', 'Luminescence', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Packages suggested but not available for checking:
  'GO.db', 'GOstats', 'ROCR', 'ape', 'blockmodels', 'car', 'ergm',
  'ggplot2', 'huge', 'kernlab', 'networkDynamic', 'networkTomography',
  'ngspatial', 'org.Sc.sgd.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'AER', 'car', 'geepack', 'lme4', 'plm'
Note: skipping ‘sandwich-CL.Rnw’ due to unavailable dependencies:
  'geepack', 'plm'
Note: skipping ‘sandwich-OOP.Rnw’ due to unavailable dependencies: 'AER'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'xml2', 'rvest', 'lubridate', 'dplyr', 'readr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'scales', 'janitor', 'readr', 'ggthemes',
  'readxl', 'ggtext', 'odbc'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sanitizers.Rcheck/00install.out’ for details.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'rmarkdown', 'shiny', 'colourpicker', 'manipulateWidget', 'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'scales', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plyr', 'pcaMethods', 'ggplot2', 'reshape2', 'shiny', 'bslib', 'DT'

Packages suggested but not available for checking:
  'rmarkdown', 'pander', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'covr', 'haven', 'lubridate', 'rmarkdown', 'scales', 'stringi',
  'testthat', 'units'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'scales', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'widyr', 'stringr', 'tidytext', 'tidyr', 'igraph',
  'ggplot2', 'ggraph', 'scales', 'reshape2', 'lubridate', 'ldatuning',
  'topicmodels'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'furrr', 'ggplot2', 'lubridate', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'future', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘BSDA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'lubridate', 'dplyr', 'readr', 'tidyr'

Package suggested but not available for checking: ‘openair’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'PolynomF', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'FitARMA', 'forecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'stringi', 'ggplot2', 'ggiraph', 'mschart',
  'officer', 'fs', 'rvest'

Packages suggested but not available for checking:
  'covr', 'srvyr', 'haven', 'readr', 'ggfittext', 'labelled',
  'testthat', 'readxl', 'htmltools', 'reactable', 'stringr', 'qs',
  'quarto', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'car'

Package suggested but not available for checking: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'readODS', 'openxlsx'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘sarp.snowprofile’

Packages suggested but not available for checking:
  'rmarkdown', 'shiny', 'dendextend', 'smacof', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sarp.snowprofile', 'reticulate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

Packages suggested but not available for checking:
  'rmarkdown', 'stringr', 'sarp.snowprofile.alignment'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'AzureStor', 'dplyr', 'Rcpp', 'RcppParallel', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'digest'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AICcmodavg’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘haven’
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'fda', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readr', 'stringr', 'stringi'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package suggested but not available for checking: ‘lme4’
Error(s) in re-building vignettes:
  ...
--- re-building ‘Usinglmer.Rnw’ using Sweave

Error: processing vignette 'Usinglmer.Rnw' failed with diagnostics:
 chunk 1 (label = preliminaries) 
Error in library(lme4) : there is no package called ‘lme4’

--- failed re-building ‘Usinglmer.Rnw’

SUMMARY: processing the following file failed:
  ‘Usinglmer.Rnw’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘reticulate’

Packages suggested but not available for checking: 'mockery', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fmtr', 'libr', 'reporter', 'procs'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tidylog', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'partitions', 'graphicalExtremes', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid NAMESPACE file, parsing gives:
Error in packageVersion("raster"): there is no package called ‘raster’

See section ‘Package namespaces’ in the ‘Writing R Extensions’ manual.
Packages required but not available: 'PBSmapping', 'geosphere'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'snakecase', 'terra'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘glmnet’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

Packages suggested but not available for checking: 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'MSGARCH', 'forecast', 'rugarch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ROOPSD', 'transport', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'twang', 'survey'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DiagrammeR', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'blockmodels', 'Rcpp', 'igraph', 'ggplot2', 'GREMLINS',
  'stringr', 'reshape2', 'prodlim', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'rmarkdown', 'aricode', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales', 'reshape2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'tidyr', 'dplyr', 'testthat'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'testthat', 'xml2', 'sf', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘spatstat.geom’

Package suggested but not available for checking: ‘rmarkdown’

Packages which this enhances but not available for checking:
  'gurobi', 'pogs', 'osqp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'httptest', 'ggplot2', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘reticulate’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'stringr', 'tensorflow'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
License stub is invalid DCF.
Package suggested but not available for checking: ‘TAM’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppParallel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'TruncatedNormal', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘farver’

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'stringi', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'car', 'kableExtra', 'readxl'

Packages suggested but not available for checking:
  'testthat', 'shiny', 'scplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'plyr', 'Rcpp', 'tidyr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggplot2', 'reshape2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xml2', 'stringr', 'dplyr', 'Seurat', 'SeuratObject'

Packages suggested but not available for checking:
  'pheatmap', 'rmarkdown', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

Packages suggested but not available for checking:
  'leafem', 'leaflet', 'leafpop', 'mapview', 'raster', 'spelling',
  'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ActivePathways', 'AdaptGauss', 'igraph', 'mixtools', 'reticulate'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) get.events.Rd:51: Lost braces
    51 |   code{\link[deSolve]{events}}
       |       ^
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'jmvcore', 'ggplot2', 'cowplot', 'ggstance', 'ggridges'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'digest'

Package suggested but not available for checking: ‘rmarkdown’

Package which this enhances but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'DataVisualizations', 'ggplot2', 'ggExtra', 'plotly', 'FCPS',
  'parallelDist', 'secr', 'ClusterR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggforce', 'ggfun', 'tidyr', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'prettydoc', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'testthat', 'shiny', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) PermBiclust.beta.ks.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.}
       |                              ^
checkRd: (-1) PermBiclust.beta.ks.Rd:30: Lost braces
    30 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals}
       |                           ^
checkRd: (-1) PermBiclust.sigclust.Rd:32: Lost braces; missing escapes or markup?
    32 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.}
       |                              ^
checkRd: (-1) PermBiclust.sigclust.Rd:33: Lost braces
    33 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals}
       |                           ^
checkRd: (-1) PermBiclust.sigclust_stop.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.}
       |                              ^
checkRd: (-1) PermBiclust.sigclust_stop.Rd:36: Lost braces
    36 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals}
       |                           ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'raster', 'fields', 'LiblineaR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘readxl’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reshape2’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘pcalg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘distances’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggrepel', 'igraph', 'pROC', 'Rcpp', 'scales',
  'uwot', 'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'ggrastr', 'rmumps', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Seurat', 'cowplot', 'dplyr', 'ggbeeswarm', 'ggplot2', 'ggprism',
  'ggrastr', 'ggrepel', 'janitor', 'paletteer', 'patchwork', 'scales',
  'scattermore', 'SeuratObject', 'stringi', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'ComplexHeatmap', 'dittoSeq', 'DropletUtils', 'ggpubr', 'Nebulosa',
  'rliger', 'rmarkdown', 'scuttle', 'qs', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dbplyr', 'dplyr', 'lubridate', 'RSQLite', 'stringr', 'tidyr',
  'tidyverse'

Packages suggested but not available for checking:
  'conflicted', 'odbc', 'rmarkdown', 'RPostgres', 'roxygen2',
  'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) scdensity.Rd:119-120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) scdensity.Rd:121-123: Lost braces in \itemize; meant \describe ?
checkRd: (-1) scdensity.Rd:124-126: Lost braces in \itemize; meant \describe ?
checkRd: (-1) scdensity.Rd:127-130: Lost braces in \itemize; meant \describe ?
checkRd: (-1) scdensity.Rd:131-135: Lost braces in \itemize; meant \describe ?
checkRd: (-1) scdensity.Rd:136-138: Lost braces in \itemize; meant \describe ?
checkRd: (-1) scdensity.Rd:139-142: Lost braces in \itemize; meant \describe ?
checkRd: (-1) scdensity.Rd:143-144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) scdensity.Rd:145-147: Lost braces in \itemize; meant \describe ?
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'igraph', 'uwot', 'Rcpp', 'RcppParallel', 'RcppAnnoy', 'torch',
  'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readxl', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'plyr', 'shiny', 'shinytest', 'janitor',
  'rclipboard', 'rvest', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'future.apply', 'Seurat'

Packages suggested but not available for checking:
  'biomaRt', 'covr', 'DT', 'ggplot2', 'GOSemSim', 'igraph',
  'kableExtra', 'ontoProc', 'pkgdown', 'plotly', 'rmarkdown', 'rrvgo',
  'spelling', 'shiny', 'shinythemes', 'shinyWidgets',
  'SingleCellSignalR', 'testthat', 'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mirt’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'scater', 'splatter'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘devtools’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cookies', 'shiny'

Packages suggested but not available for checking:
  'covr', 'pkgload', 'rmarkdown', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'GEOquery', 'openxlsx', 'rPanglaoDB', 'reticulate',
  'Seurat', 'scater', 'LoomExperiment', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'scRNAseq', 'BiocStyle', 'htmltools', 'sceasy',
  'SeuratDisk', 'SeuratWrappers', 'zellkonverter', 'GEOfastq'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Seurat', 'UCell', 'dplyr', 'patchwork', 'ggridges', 'reshape2',
  'ggplot2', 'BiocParallel'

Packages suggested but not available for checking: 'ggparty', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'pROC', 'ade4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Seurat', 'biomaRt', 'dplyr', 'tidyr', 'networkD3', 'slanter'

Packages suggested but not available for checking:
  'devtools', 'pheatmap', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'apcluster', 'OpenImageR'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'R.cache', 'dplyr', 'rvest', 'stringr', 'xml2', 'tidygraph',
  'ggraph', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'prettydoc', 'roxygen2', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ez’
checkRd: (-1) schoRsch.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) schoRsch.Rd:45: Lost braces in \itemize; meant \describe ?
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'testthat', 'tidytext'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'ggplot2', 'ggtext', 'hexSticker', 'hrbrthemes',
  'readr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'cowplot', 'ggplot2', 'ggthemes', 'uwot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'data.tree', 'dplyr', 'googledrive', 'ggplot2', 'ggwordcloud',
  'readxl', 'stringr', 'SemNetCleaner', 'tidyr', 'tidytext', 'tidyxl'

Packages suggested but not available for checking: 'rmarkdown', 'RRPP'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘scales’

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'dplyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'rmarkdown'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'tm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘gplots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RANN', 'igraph', 'stringr', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'gghalves', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'htmlTable', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lmomco’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘PINSPlus’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'dplyr', 'ggplot2', 'ggtree', 'igraph', 'parallelDist',
  'patchwork', 'phangorn', 'Rcpp', 'reshape2', 'RcppParallel',
  'stringr', 'tidygraph', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fgsea', 'reshape2', 'ComplexHeatmap', 'ggplot2', 'Rcpp', 'dplyr',
  'edgeR', 'sva', 'Rmisc', 'ggpubr', 'msigdbr', 'sccore', 'NMF',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'coda.base', 'simplifyEnrichment', 'WGCNA',
  'cowplot', 'stringr', 'AnnotationDbi', 'GO.db', 'conos', 'pagoda2',
  'tm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available: 'broom', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'pheatmap', 'Seurat', 'GSVA', 'downloader', 'pcaMethods',
  'gProfileR', 'gprofiler2', 'ADAPTS', 'reshape'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'BiocSingular', 'scater', 'scran', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'devtools', 'SeuratObject'
Packages required but not available:
  'ggplot2', 'alakazam', 'shazam', 'dplyr', 'Rcpp', 'scales',
  'stringi', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'CIARA', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'car', 'e1071', 'gbm', 'reshape2', 'sqldf', 'stringr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'openxlsx', 'stringi', 'xml2'

Packages suggested but not available for checking:
  'rmarkdown', 'pkgdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RSpectra', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘run-all.R’ [0s/1s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'crch', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sqldf', 'dplyr'

Packages suggested but not available for checking:
  'Rmixmod', 'ggplot2', 'rmarkdown', 'plotly', 'pROC', 'shiny',
  'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggdist', 'ggplot2', 'scoringRules'

Packages suggested but not available for checking:
  'kableExtra', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'RANN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'dynutils', 'dynwrap', 'ggplot2', 'lmds', 'pheatmap',
  'princurve', 'ranger', 'RANN', 'reshape2', 'tidyr'

Packages suggested but not available for checking:
  'anndata', 'covr', 'reticulate', 'rmarkdown', 'Seurat', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'reshape2', 'car', 'forecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘doBy’

Package suggested but not available for checking: ‘lme4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggpubr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Seurat', 'dplyr', 'rdist', 'energy'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CVXR', 'dplyr', 'fastDummies', 'ggplot2', 'Qtools', 'reshape2',
  'stringr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'mixtools', 'Rsamtools'

Packages suggested but not available for checking:
  'readr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scan'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Seurat', 'dplyr', 'tidyr', 'SeuratObject', 'WGCNA',
  'broom'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'rmarkdown', 'qpdf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'AnnotationDbi', 'AUCell', 'clusterProfiler', 'ComplexHeatmap',
  'covr', 'decoupleR', 'dplyr', 'enrichplot', 'ggalluvial',
  'ggbeeswarm', 'ggdist', 'ggExtra', 'ggh4x', 'ggnewscale', 'ggplot2',
  'ggplotify', 'ggrastr', 'ggrepel', 'ggridges', 'ggsignif',
  'infercnv', 'Nebulosa', 'org.Hs.eg.db', 'patchwork', 'pheatmap',
  'plyr', 'qpdf', 'rjags', 'rmarkdown', 'scales', 'scattermore',
  'Seurat', 'SeuratObject', 'sf', 'stringr', 'svglite', 'testthat',
  'tidyr', 'UCell', 'viridis'
Packages unavailable to check Rd xrefs: ‘infercnv’, ‘ComplexHeatmap’, ‘UCell’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # nolint start
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'AER', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'xml2', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rvest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rvest', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'fs', 'imager'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'RSQLite', 'oligoClasses'
checkRd: (-1) simulateSNPs.Rd:46: Escaped LaTeX specials: \& \& \&
checkRd: (-1) simulateSNPs.Rd:80: Escaped LaTeX specials: \& \& \&
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'splatter', 'edgeR', 'Seurat'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'lintr', 'devtools', 'roxygen2', 'rmarkdown'
Running examples in ‘scriptexec-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: execute
> ### Title: Executes a script and returns the output. The stdout and stderr
> ###   are captured and returned. In case of errors, the exit code will
> ###   return in the status field.
> ### Aliases: execute
> 
> ### ** Examples
> 
> library('scriptexec')
> library('testthat')
Error in library("testthat") : there is no package called ‘testthat’
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'
checkRd: (-1) scriptloc.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Get location of script in a fashion analagous to ${BASH_SOURCE[0]}}
       |                                                          ^
Packages required but not available: 'RCy3', 'dplyr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'devtools'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'dplyr', 'testthat'
Running examples in ‘scriptuRs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: kjv_bible
> ### Title: Tidy data frame of the King James Version of the Bible
> ### Aliases: kjv_bible
> 
> ### ** Examples
> 
> library(dplyr)
Error in library(dplyr) : there is no package called ‘dplyr’
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'ape', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'scDHA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Seurat', 'ggplot2', 'stringr', 'clustree', 'dplyr', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Rtsne', 'edgeR', 'TPEA', 'Rmisc', 'plyr', 'ggthemes',
  'reshape2', 'Hmisc', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘htmltools’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘uwot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'corrr', 'covr', 'devtools', 'ggplot2', 'ggrepel', 'janitor',
  'rmarkdown', 'roxygen2', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'covr', 'httptest', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'ggplot2', 'spatstat.geom', 'ggpubr', 'spatstat.random',
  'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'spatialTIME'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
GNU make is a SystemRequirements.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'RSpectra', 'scTenifoldNet'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RSpectra’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'future.apply', 'future', 'ggplot2', 'reshape2',
  'RcppArmadillo', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

Package which this enhances but not available for checking: ‘glmGamPoi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'scales', 'dplyr', 'viridis'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘smotefamily’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggExtra', 'ggplot2', 'plotly', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'survey', 'ggplot2'
Error(s) in re-building vignettes:
  ...
--- re-building ‘SDaA_using_survey.Rnw’ using Sweave

Error: processing vignette 'SDaA_using_survey.Rnw' failed with diagnostics:
 chunk 2 (label = loadPkg) 
Error in library(survey) : there is no package called ‘survey’

--- failed re-building ‘SDaA_using_survey.Rnw’

SUMMARY: processing the following file failed:
  ‘SDaA_using_survey.Rnw’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'glmnet', 'huge'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rjson', 'rmarkdown'
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                  ^
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                                         ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'ggplot2', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) sda.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sda.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sda.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sda.package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sda.package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sda.package.Rd:24: Lost braces in \itemize; meant \describe ?
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘readxl’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shinythemes', 'shiny', 'shinyjs', 'shinyTree', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘broom’

Packages suggested but not available for checking:
  'cffr', 'rmarkdown', 'skimr', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'sf', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'sdcHierarchies', 'stringr', 'Rglpk', 'SSBtools'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'digest', 'RegSDC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'shiny'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rgl', 'Bessel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'ggplot2', 'tidyr', 'rnaturalearth', 'scales',
  'magick'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'geosphere', 'ggmap', 'lubridate', 'dplyr', 'sf', 'stars',
  'ggspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'shiny'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'rgdal', 'automap', 'future.apply',
  'blockCV', 'dismo', 'DT', 'kernlab', 'readxl', 'rhandsontable', 'sf',
  'shinyBS', 'shinyFiles', 'SSDM', 'ggcorrplot', 'ggplot2', 'cowplot',
  'haven', 'dplyr', 'tidyr', 'rgeos'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'dismo'

Packages suggested but not available for checking:
  'maptools', 'testthat', 'rmarkdown', 'rgdal', 'gbm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'terra'

Packages suggested but not available for checking:
  'ggplot2', 'reshape2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

Packages suggested but not available for checking:
  'R.rsp', 'shinyBS', 'shiny', 'dismo', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fmesher', 'fishMod', 'lme4', 'TMB', 'RcppEigen'

Packages suggested but not available for checking:
  'dplyr', 'effects', 'future', 'future.apply', 'ggforce', 'glmmTMB',
  'ggplot2', 'rmarkdown', 'sf', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dismo', 'gbm', 'ggplot2', 'maxnet', 'Rcpp', 'stringr', 'terra'

Packages suggested but not available for checking:
  'covr', 'htmltools', 'kableExtra', 'pkgdown', 'plotROC', 'rasterVis',
  'reshape2', 'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plm', 'RSpectra', 'sf', 'spdep'

Packages suggested but not available for checking: 'rmarkdown', 'splm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GB2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘PolynomF’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'haven', 'lubridate', 'readxl', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘oce’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘CompQuadForm’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinythemes', 'shinyjs', 'shinyWidgets', 'ggplot2',
  'dplyr', 'plotly', 'DT', 'readxl', 'raster', 'stringr', 'viridis',
  'rmarkdown', 'htmlwidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'googleAuthR', 'stringr'

Packages suggested but not available for checking:
  'shiny', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dygraphs', 'htmltools', 'lubridate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'seasonalview', 'testthat', 'covr', 'rmarkdown', 'spelling'
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT

Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
Fortran STOP
IEEE arithmetic exceptions signaled: INEXACT
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'shinydashboard', 'shiny', 'dygraphs', 'htmlwidgets', 'openxlsx'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) seas.check.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:52-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:58: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘forecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggplotify', 'patchwork', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rms', 'lubridate', 'reshape2', 'plyr'

Package suggested but not available for checking: ‘waterData’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'GpGp', 'spikeSlabGAM'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RcppArmadillo', 'geosphere'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Hmisc', 'optimization'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'secr', 'kofnGA', 'sf', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'secrlinear', 'ipsecr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'stringr', 'tidyr', 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'secr', 'igraph', 'sf'

Packages suggested but not available for checking:
  'rmarkdown', 'secrdesign', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'raster', 'Rcpp', 'RcppNumerical', 'RcppParallel', 'sf', 'stringr',
  'terra', 'RcppEigen'

Packages suggested but not available for checking:
  'gdistance', 'igraph', 'readxl', 'rmarkdown', 'spatstat',
  'spatstat.geom', 'spatstat.random', 'spsurvey', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DDD', 'ape', 'geiger', 'Rcpp', 'RcppParallel', 'ggplot2'

Packages suggested but not available for checking:
  'diversitree', 'phytools', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'MCMCpack', 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'haven', 'readr', 'readxl', 'stringr', 'tidyr', 'dplyr', 'lubridate'

Packages suggested but not available for checking:
  'lintr', 'rmarkdown', 'testthat', 'tufte', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'stringr', 'ggplot2'

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘CCA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'quanteda', 'proxyC', 'Rcpp', 'RcppParallel', 'RcppArmadillo',
  'testthat'

Packages suggested but not available for checking:
  'testthat', 'topicmodels', 'keyATM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggmsa', 'msa', 'ggplot2', 'AnnotationHub',
  'GenomicFeatures', 'cowplot', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'org.Rn.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'drc', 'ggplot2', 'car', 'stringr', 'sf', 'dplyr'

Packages suggested but not available for checking:
  'DT', 'rmarkdown', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'Ryacas', 'ggplot2', 'tidyr', 'dplyr', 'Hmisc'

Packages suggested but not available for checking: 'rmarkdown', 'rsbml'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'AnnotationDbi', 'biomaRt', 'GEOquery', 'qs', 'readr'

Packages suggested but not available for checking:
  'ArrayExpress', 'org.Mm.eg.db', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'rgl', 'demography', 'Rcpp', 'reshape2', 'LaF',
  'RSQLite', 'openxlsx', 'labelled', 'scales', 'readr', 'tidyr',
  'stringr', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'brms', 'factoextra', 'ggdist', 'ggraph', 'ggrepel', 'ggridges',
  'ggside', 'glmmTMB', 'lme4', 'patchwork', 'qqplotr', 'RcppEigen',
  'rmarkdown', 'rstanarm', 'scales', 'testthat', 'tidygraph', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'forecast', 'dplyr', 'forecTheta', 'stringr', 'future', 'furrr',
  'tsfeatures'

Packages suggested but not available for checking:
  'testthat', 'covr', 'repmis', 'rmarkdown', 'ggplot2', 'tidyr',
  'Mcomp', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'FactoMineR', 'ggplot2', 'rgl'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'plyr', 'reshape2', 'ggplot2', 'Rcpp', 'scales',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dygraphs', 'leaflet', 'adehabitatLT',
  'moveHMM', 'htmltools', 'move', 'devtools', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘jointseg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'readr', 'lubridate', 'imputeTS', 'scales', 'greybox',
  'philentropy', 'Rfast', 'narray', 'fastDummies'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'spdep', 'OasisR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'flowMerge', 'flowClust', 'flowCore', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tidyr', 'dplyr', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'units'

Packages suggested but not available for checking:
  'classInt', 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'spdep', 'spgrass6', 'rgdal'
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'dplyr', 'ggplot2', 'scales',
  'tidycensus', 'tigris', 'dendextend', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'RSQLite', 'dplyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'lubridate', 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'arm', 'DescTools', 'patchwork', 'ggpubr', 'ggplot2',
  'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'factoextra', 'rvest', 'stringi', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'glmnet', 'igraph', 'Rfast', 'Cascade', 'varbvs'

Packages suggested but not available for checking: 'rmarkdown', 'mixOmics'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘arm’

Packages suggested but not available for checking:
  'table1', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'glmnet', 'intervals', 'adaptMCMC', 'Rcpp'

Package suggested but not available for checking: ‘Rmpfr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'latticeExtra', 'ade4', 'FD'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat', 'ecespa', 'spatstat.geom', 'spatstat.explore',
  'spatstat.model', 'spatstat.random'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘Ecdat’
Packages suggested but not available for checking:
  'chromote', 'rmarkdown', 'RSelenium', 'rvest', 'shiny', 'shinytest2',
  'testthat', 'wdman', 'xml2'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘xml2’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'RSauceLabs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'xml2'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'xgboost', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'shiny', 'shiny.semantic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shiny.semantic', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'shinydashboard', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'DescTools'

Package suggested but not available for checking: ‘kernlab’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyAce', 'semPlot', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Packages suggested but not available for checking:
  'ggplot2', 'piecewiseSEM', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggrepel'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rsyntax', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'dagitty', 'flip', 'ggm', 'glmnet', 'RBGL'

Package suggested but not available for checking: ‘huge’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggrepel'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CORElearn', 'RSNNS', 'fpc', 'ks', 'StatMatch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'twang', 'fastGHQuad', 'Rcpp'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'energy', 'FNN', 'furrr', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'splines2'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'testthat', 'rmarkdown', 'DiagrammeR', 'DiagrammeRsvg'

Packages which this enhances but not available for checking:
  'semPlot', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nloptr', 'ggplot2', 'ggrepel'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'Amelia', 'bmemLavaan'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'lubridate', 'leaflet', 'urlshorteneR'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readxl', 'stringi', 'shiny', 'editData', 'miniUI'

Packages suggested but not available for checking: 'htmlTable', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'htmlTable', 'rmarkdown'
checkRd: (-1) append.dictionary.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:40-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:44-47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:89-92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:95-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:113: Lost braces in \itemize; meant \describe ?
Packages required but not available:
  'dplyr', 'plyr', 'ggplot2', 'igraph', 'qgraph', 'scales', 'car',
  'broom', 'effects', 'philentropy'

Packages suggested but not available for checking:
  'shiny', 'shinyjs', 'shinyalert', 'shinyMatrix', 'shinyBS',
  'spreadr', 'animation', 'readxl', 'NetworkToolbox', 'SemNetCleaner'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'qgraph', 'sem', 'plyr', 'igraph', 'rockchalk', 'OpenMx'

Package suggested but not available for checking: ‘MplusAutomation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'bookdown', 'covsim', 'doFuture', 'future', 'progressr', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘semPlot’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mi’

Package suggested but not available for checking: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Errors in running code in vignettes:
when running code in ‘Hom-vignette.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘SEMsens.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘Smith12vignette.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?
when running code in ‘Smith19_6phantom3.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘Hom-vignette.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘SEMsens.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘Smith12vignette.Rmd’ using ‘UTF-8’... failed to complete the test
  ‘Smith19_6phantom3.Rmd’ using ‘UTF-8’... failed to complete the test
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kutils', 'plyr', 'stationery'

Package suggested but not available for checking: ‘rockchalk’

VignetteBuilder package required for checking but not installed: ‘stationery’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CompQuadForm', 'progressr', 'future.apply'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'Amelia', 'blavaan', 'mice', 'testthat'
checkRd: (-1) PAVranking.Rd:77-79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PAVranking.Rd:80-82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PAVranking.Rd:83-85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PAVranking.Rd:86-87: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in ‘semTools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: combinequark
> ### Title: Combine the results from the quark function
> ### Aliases: combinequark
> 
> ### ** Examples
> 
> 
> set.seed(123321)
> dat <- HolzingerSwineford1939[,7:15]
> misspat <- matrix(runif(nrow(dat) * 9) < 0.3, nrow(dat))
> dat[misspat] <- NA
> dat <- cbind(HolzingerSwineford1939[,1:3], dat)
> 
> quark.list <- quark(data = dat, id = c(1, 2))
Data Check Passed.
ID Check Passed.
Loading required namespace: mice
Failed with error:  ‘there is no package called ‘mice’’
The quark function requires the "mice" package to be installed.
> 
> final.data <- combinequark(quark = quark.list, percent = 80)
Error in if (pct[i] >= percent) { : argument is of length zero
Calls: combinequark
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'OpenMx', 'stringr', 'ggplot2', 'tidyr', 'future.apply', 'ctsemOMX'

Packages suggested but not available for checking:
  'rmarkdown', 'viridis', 'testthat', 'future'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'roxygen2', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'usethis', 'emayili'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RSQLite', 'readxl', 'stringr', 'DescTools', 'shiny',
  'shinydashboard', 'htmltools', 'DT', 'dplyr', 'ggplot2', 'Hmisc',
  'haven', 'plotly', 'cicerone', 'reticulate'

Packages suggested but not available for checking:
  'rmarkdown', 'shinycssloaders', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'htmltools'
checkRd: (-1) sendmail_options.Rd:32-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:38-39: Lost braces in \itemize; meant \describe ?
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'mlr3', 'mlr3learners', 'mlr3filters', 'mlr3pipelines', 'mlr3viz',
  'paradox', 'mlr3tuning', 'bbotk', 'readr', 'lubridate', 'visNetwork'

Packages suggested but not available for checking:
  'xgboost', 'ranger', 'kknn', 'glmnet', 'e1071', 'mlr3misc',
  'FSelectorRcpp', 'lme4', 'nloptr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ape', 'phylolm', 'ggplot2', 'caper', 'phytools', 'geiger'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BiasedUrn’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'relaimpo', 'ggrepel', 'stringi', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'Rcpp', 'dtwclust', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggExtra', 'gplots', 'igraph', 'IncDTW', 'ks', 'mc2d', 'RANN',
  'reshape2', 'rgl', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'doBy', 'FactoMineR', 'MCMCpack', 'factoextra', 'fields', 'ggdendro',
  'plotly', 'shiny', 'ggplot2', 'reshape2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘maxLik’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lhs', 'Rfast', 'scales', 'stringr', 'Rcpp',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FactoMineR', 'ggplot2', 'reshape2', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package suggested but not available for checking: ‘car’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘BiasedUrn’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lubridate', 'plyr', 'ggmap', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'tokenizers.bpe', 'word2vec'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reticulate', 'tensorflow', 'tfhub', 'xgboost'

Packages suggested but not available for checking:
  'rmarkdown', 'prettydoc', 'text2vec'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tm', 'ngramrr', 'glmnet', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lexicon', 'stringi', 'syuzhet', 'textclean', 'textshape'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TSdist', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'ggplot2', 'glmnet', 'ISOweek', 'quanteda', 'Rcpp',
  'RcppRoll', 'RcppParallel', 'stringi', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'e1071', 'lexicon', 'testthat', 'tm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'quanteda', 'RcppHungarian', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggplot2', 'ggridges', 'plotly', 'future', 'future.apply',
  'progressr', 'testthat', 'covr', 'stm', 'topicmodels', 'seededlda',
  'keyATM', 'LDAvis', 'servr', 'stringr', 'sentometrics', 'spacyr',
  'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'httptest', 'mockery', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'geoTS', 'eBsc', 'dtwclust', 'dplyr', 'ggnewscale',
  'spiralize'

Packages suggested but not available for checking: 'TSclust', 'bigmemory'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'testthat', 'vdiffr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Auto-generated content requiring editing in Rd file 'seqCBS-package.Rd':
  \details: ‘...the package, including the most important ~~ ~~ functions ~~’
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Errors in running code in vignettes:
when running code in ‘seqDesignInstructions.Rnw’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘seqDesignInstructions.Rnw’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'igraph', 'dplyr'

VignetteBuilder package required for checking but not installed: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'geepack', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) SeqDesignInference.Rd:319: Lost braces; missing escapes or markup?
   319 | (a) difference in means estimator i.e. [ybar_T - ybar_C +/- t_{alpha/2, n_T + n_C - 2} s_{ybar_T - ybar_C}] or
       |                                                               ^
checkRd: (-1) SeqDesignInference.Rd:319: Lost braces; missing escapes or markup?
   319 | (a) difference in means estimator i.e. [ybar_T - ybar_C +/- t_{alpha/2, n_T + n_C - 2} s_{ybar_T - ybar_C}] or
       |                                                                                          ^
checkRd: (-1) SeqDesignInference.Rd:320: Lost braces; missing escapes or markup?
   320 | (b) the OLS estimator i.e. [beta_hat_T +/- t_{alpha/2, n + p - 2} s_{beta_hat_T}]
       |                                              ^
checkRd: (-1) SeqDesignInference.Rd:320: Lost braces; missing escapes or markup?
   320 | (b) the OLS estimator i.e. [beta_hat_T +/- t_{alpha/2, n + p - 2} s_{beta_hat_T}]
       |                                                                     ^
Packages required but not available:
  'plyr', 'phangorn', 'qvalue', 'ggplot2', 'R2jags', 'scales', 'ape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sva', 'matchingR', 'cate'

Packages suggested but not available for checking:
  'covr', 'testthat', 'DESeq2', 'rmarkdown', 'qvalue', 'edgeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘TraMineR’

Packages suggested but not available for checking:
  'R.rsp', 'rmarkdown', 'FactoMineR', 'descriptio', 'TraMineRextras',
  'WeightedCluster', 'ade4', 'questionr', 'rmdformats', 'dplyr',
  'ggplot2'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'igraph', 'nloptr', 'Rcpp', 'TraMineR', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dHSIC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Amelia', 'rms', 'stringr', 'TraMineR', 'swfscMisc', 'plyr', 'dplyr',
  'dfidx', 'mice', 'doRNG', 'ranger', 'mlr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ade4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘yulab.utils’

Packages suggested but not available for checking:
  'downloader', 'rmarkdown', 'GenomicAlignments', 'muscle',
  'Rsamtools', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'SKAT'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/seqminer.Rcheck/00install.out’ for details.
Argument items with no description in Rd file 'sequential.design.Rd':
  ‘\dots’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'igraph', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'RcppParallel', 'dplyr', 'stringi'

Packages suggested but not available for checking:
  'rmarkdown', 'qs', 'igraph', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'selectiveInference'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘plyr’

Packages suggested but not available for checking:
  'openxlsx', 'rmarkdown', 'bookdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'dbplyr', 'htmltools', 'readr', 'scales', 'stringi'

Packages suggested but not available for checking: 'DT', 'covr', 'DBItest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dbscan', 'dendextend', 'GA', 'ggplot2', 'keras', 'Rtsne', 'scales',
  'smacof', 'tensorflow', 'testthat', 'umap'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'shiny', 'gplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘httpuv’

Packages suggested but not available for checking: 'later', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gplots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘qgraph’
checkRd: (-1) SEset_to_network.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) network_to_SEset.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) network_to_path.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) path_to_network.Rd:29: Escaped LaTeX specials: \&
Running examples in ‘SEset-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: network_to_SEset
> ### Title: SE-set from precision matrix
> ### Aliases: network_to_SEset
> 
> ### ** Examples
> 
> # first estimate the precision matrix
> data(riskcor)
> omega <- (qgraph::EBICglasso(riskcor, n = 69, returnAllResults = TRUE))$optwi
Error in loadNamespace(x) : there is no package called ‘qgraph’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘terra’

Packages suggested but not available for checking:
  'kableExtra', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'mockery', 'reticulate', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘forecast’
Packages required but not available: 'QCA', 'ggplot2', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘do’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following significant warnings:

  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
  Warning: 'is.R' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'future', 'future.apply', 'progressr', 'Rcpp', 'spam', 'RcppEigen'

Packages suggested but not available for checking:
  'fs', 'ggplot2', 'HDF5Array', 'rmarkdown', 'testthat', 'BPCells',
  'sf'

Package which this enhances but not available for checking: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'SeuratObject', 'cowplot', 'fastDummies', 'future', 'future.apply',
  'ggplot2', 'ggrepel', 'ggridges', 'igraph', 'leiden', 'miniUI',
  'patchwork', 'plotly', 'progressr', 'RANN', 'Rcpp', 'RcppAnnoy',
  'RcppHNSW', 'reticulate', 'ROCR', 'RSpectra', 'Rtsne', 'scales',
  'scattermore', 'sctransform', 'shiny', 'spatstat.explore',
  'spatstat.geom', 'uwot', 'RcppEigen'

Packages suggested but not available for checking:
  'ape', 'BPCells', 'testthat', 'MAST', 'DESeq2', 'rtracklayer',
  'Rfast2', 'monocle', 'metap', 'enrichR', 'mixtools', 'ggrastr',
  'presto', 'harmony'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'DescTools', 'readr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'stringi', 'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'cubature', 'fastGHQuad', 'maxLik', 'mnorm', 'plm', 'trustOptim'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'arrow', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'igraph', 'kableExtra', 'tidyr', 'stringr', 'Rcpp',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'ggraph', 'ggplot2', 'pkgdown', 'rmarkdown', 'testthat', 'tidygraph',
  'tidyverse', 'networkD3'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'sf'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'spdep'

Packages suggested but not available for checking:
  'broom', 'dbscan', 'dplyr', 'ggplot2', 'patchwork', 'rmarkdown',
  'sfnetworks', 'stringr', 'testthat', 'tidyr', 'igraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘DoE.base’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'geometries'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'sf', 'SpatialKDE', 'spdep'

Packages suggested but not available for checking:
  'testthat', 'lubridate', 'rmarkdown', 'ggspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'igraph', 'lwgeom', 'sf', 'sfheaders', 'tidygraph', 'units'

Packages suggested but not available for checking:
  'dbscan', 'ggplot2', 'rmarkdown', 's2', 'spatstat.geom',
  'spatstat.linnet', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'plotly', 'rmarkdown', 'tidyr'
Running examples in ‘sfo-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sankey_ly
> ### Title: Sankey Plot with Plotly
> ### Aliases: sankey_ly
> 
> ### ** Examples
> 
> data("sfo_passengers")
> 
> library(dplyr)
Error in library(dplyr) : there is no package called ‘dplyr’
Execution halted
Packages required but not available: 'classInt', 'Rcpp', 's2', 'units'

Packages suggested but not available for checking:
  'nanoarrow', 'covr', 'dplyr', 'ggplot2', 'lwgeom', 'mapview', 'odbc',
  'pool', 'raster', 'rmarkdown', 'RPostgres', 'RSQLite', 'spatstat',
  'spatstat.geom', 'spatstat.random', 'spatstat.linnet', 'stars',
  'terra', 'testthat', 'tidyr', 'tmap', 'wk'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'Rmpfr', 'gmp'

Packages which this enhances but not available for checking:
  'tikzDevice', 'e1071', 'Hmisc'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'spacetime', 'rmarkdown', 'dplyr', 'trajectories', 'stars', 'ncmeta',
  'tidyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'wordspace', 'ff'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'adehabitatLT', 'geosphere', 'scales', 'covr',
  'rmarkdown', 'lwgeom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'SuppDists'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RSelenium', 'qdapRegex', 'dplyr', 'stringr', 'plyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GBJ’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'conquer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'bigmemory', 'RcppArmadillo'

Packages suggested but not available for checking:
  'bigmemory', 'glmnet', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘copula’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plotly', 'Rcpp', 'TeachingSampling'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SGL.Rcheck/00install.out’ for details.
Packages required but not available: 'ggplot2', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'tidyr'

Packages suggested but not available for checking:
  'dplyr', 'ModelMetrics', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘DiscreteFDR’
Running examples in ‘sgof-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Discrete.SGoF
> ### Title: Discrete SGoF multiple testing procedure
> ### Aliases: Discrete.SGoF print.Discrete.SGoF
> ### Keywords: htest Binomial.SGoF multi-testing
> 
> ### ** Examples
> 
> 
> 
> require(DiscreteFDR)
Loading required package: DiscreteFDR
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘DiscreteFDR’
> 
> data(amnesia) #discrete data
Warning in data(amnesia) : data set ‘amnesia’ not found
> 
> AllAdverseCases<-amnesia$OtherAdverseCases + amnesia$AmnesiaCases
Error: object 'amnesia' not found
Execution halted
Package suggested but not available for checking: ‘covr’
Packages suggested but not available for checking: 'SGP', 'rmarkdown'
Package required but not available: ‘mixOmics’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'plotly', 'randomNames', 'rngtools', 'RSQLite', 'svglite',
  'toOrdinal'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'caret', 'faux', 'SLOPE', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'SGL', 'glmnet', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'sf', 'terra', 'tidyr', 'clhs',
  'BalancedSampling', 'spatstat.geom'

Packages suggested but not available for checking:
  'rmarkdown', 'Rfast', 'testthat', 'roxygen2', 'covr', 'RANN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘optimx’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'ggplot2'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘RSelenium’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘coneproj’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'mice'
checkRd: (-1) powerShape.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:32-33: Lost braces in \itemize; meant \describe ?
'LazyData' is specified without a 'data' directory
Running examples in ‘shapeNA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: barplot.shapeNA
> ### Title: Barplot Showcasing Missingness Proportion of the Original Data
> ### Aliases: barplot.shapeNA
> 
> ### ** Examples
> 
>     S <- toeplitz(seq(1, 0.1, length.out = 3))
>     x <- mvtnorm::rmvt(100, S, df = 5)
>     y <- mice::ampute(x, mech='MCAR')$amp
Error in loadNamespace(x) : there is no package called ‘mice’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available:
  'igraph', 'terra', 'landscapemetrics', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package vignette without corresponding tangle output:
  ‘shape.Rnw’
Package suggested but not available for checking: ‘geomorph’
Packages required but not available: 'coneproj', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'xgboost', 'ggforce', 'ggExtra', 'ggpubr'

Packages suggested but not available for checking: 'rmarkdown', 'lightgbm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'egg', 'ggplot2'

Packages suggested but not available for checking:
  'cellWise', 'robustHD', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'waffle'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'kableExtra'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'DALEX', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'testthat', 'qpdf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'mvnfast', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ranger', 'xgboost', 'testthat', 'rmarkdown', 'roxygen2', 'ggplot2',
  'caret', 'gbm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggfittext', 'gggenes', 'ggplot2', 'ggrepel', 'patchwork', 'xgboost'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

Packages which this enhances but not available for checking:
  'fastshap', 'lightgbm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'interp', 'dplyr', 'tidyr', 'readr', 'doFuture'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Copyright 2013 Steven E. Pav. All Rights Reserved.
  > # Author: Steven E. Pav
  > 
  > # This file is part of SharpeR.
  > #
  > # SharpeR is free software: you can redistribute it and/or modify
  > # it under the terms of the GNU Lesser General Public License as published by
  > # the Free Software Foundation, either version 3 of the License, or
  > # (at your option) any later version.
  > #
  > # SharpeR is distributed in the hope that it will be useful,
  > # but WITHOUT ANY WARRANTY; without even the implied warranty of
  > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > # GNU Lesser General Public License for more details.
  > #
  > # You should have received a copy of the GNU Lesser General Public License
  > # along with SharpeR.  If not, see <http://www.gnu.org/licenses/>.
  > 
  > # env var:
  > # nb: 
  > # see also:
  > # todo:
  > # changelog: 
  > #
  > # Created: 2013.03.14
  > # Copyright: Steven E. Pav, 2012-2013
  > # Author: Steven E. Pav
  > # Comments: Steven E. Pav
  > # SVN: $Id: blankheader.txt 25454 2012-02-14 23:35:25Z steven $
  > 
  > # because Hadley says it should be like this.
  > # see https://github.com/hadley/devtools/wiki/Testing
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'glmnet', 'np'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'fake', 'beepr', 'future', 'future.apply', 'glmnet', 'igraph',
  'nloptr'

Packages suggested but not available for checking:
  'dbscan', 'mixOmics', 'OpenMx', 'RCy3', 'randomcoloR', 'rCOSA',
  'rmarkdown', 'sgPLS', 'testthat', 'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'aqp', 'ape', 'soilDB', 'reshape2', 'scales', 'plyr', 'digest',
  'e1071', 'stringi'

Packages suggested but not available for checking:
  'spdep', 'rvest', 'xml2', 'terra', 'raster', 'exactextractr',
  'igraph', 'dendextend', 'testthat', 'hydromad', 'latticeExtra',
  'farver', 'daymetr', 'elevatr', 'SoilTaxonomy', 'sf', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'classInt', 'spatstat.explore', 'spatstat.geom', 'spatstat.model',
  'spatstat.random', 'terra'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'rmarkdown', 'spatstat', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dcmle', 'dclone'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FNN', 'Ryacas', 'rmarkdown', 'e1071', 'NMF'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'alakazam', 'ape', 'dplyr', 'igraph', 'scales', 'seqinr',
  'stringi', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggExtra', 'ggplot2', 'ggridges', 'Hmisc', 'rmarkdown', 'scales',
  'shiny', 'shinyMatrix', 'tidyr'

Packages suggested but not available for checking: 'GGally', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rtop', 'ggplot2', 'ggpubr', 'tidyr', 'scales', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'qpdf', 'stringr', 'dpseg', 'tableHTML', 'devtools'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'cowplot', 'scales', 'ggh4x', 'stringr',
  'plotly', 'readr', 'openxlsx', 'fs', 'tidytext'

Package suggested but not available for checking: ‘roxygen2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'fastmap', 'shiny'

Packages suggested but not available for checking:
  'htmltools', 'ggplot2', 'ggExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tzdb’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'pander'
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'AER', 'spelling'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'DT', 'dygraphs', 'ggplot2', 'plotly'

Packages suggested but not available for checking:
  'covr', 'pkgdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'rmarkdown', 'scales', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'colourpicker', 'shinydisconnect'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinyjs', 'dplyr'

Packages suggested but not available for checking:
  'RSQLite', 'lubridate', 'shinydashboard', 'testthat', 'shinytest',
  'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'shinytest2', 'stringr', 'testthat', 'fs'

Packages suggested but not available for checking:
  'covr', 'lintr', 'rcmdcheck', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'shiny.react'

Packages suggested but not available for checking:
  'lintr', 'rcmdcheck', 'rmarkdown', 'shiny.router'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'brms', 'rstan'

Packages suggested but not available for checking:
  'cmdstanr', 'ggplot2', 'shinystan', 'rstanarm', 'lme4', 'testthat',
  'shinytest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Package suggested but not available for checking: ‘shinydisconnect’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'htmlwidgets'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'reactR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmltools', 'reactR', 'shiny', 'stringr', 'fontawesome'

Packages suggested but not available for checking: 'testthat', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'RSQLite', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bslib', 'ggplot2', 'ggiraph', 'htmltools', 'shiny', 'shinyWidgets',
  'htmlwidgets', 'dplyr', 'cohortBuilder', 'shinyGizmo'

Packages suggested but not available for checking:
  'pkgload', 'packer', 'sass', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'DT', 'rmarkdown', 'shinydashboard'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'shiny'

Packages suggested but not available for checking:
  'shinydisconnect', 'shinyjs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Package suggested but not available for checking: ‘shinycssloaders’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'htmltools', 'shinydashboard', 'fresh', 'waiter'

Packages suggested but not available for checking:
  'styler', 'shinyAce', 'shinyWidgets', 'shinyEffects', 'shinyjqui',
  'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools', 'promises'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmltools', 'lubridate', 'reactR', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'htmltools', 'DT', 'billboarder', 'scrypt'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Package suggested but not available for checking: ‘colourpicker’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shinyBS', 'shiny', 'shinyjs', 'plotly', 'htmlwidgets', 'htmltools'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'DT'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'shinydashboard', 'shinydashboardPlus', 'bs4Dash', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fontawesome', 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'bsicons', 'chromote', 'covr', 'lintr', 'rcmdcheck', 'rmarkdown',
  'shinytest2', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'shiny', 'rmarkdown'
Packages required but not available:
  'shiny', 'htmltools', 'dplyr', 'tidyr', 'bslib', 'iheatmapr',
  'vegawidget', 'DT', 'qvalue', 'Rfast'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'r2d3', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fontawesome', 'htmltools', 'shiny'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'fs'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'reactable', 'shinyBS', 'shinyjs', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'shiny.react'

Packages suggested but not available for checking:
  'dplyr', 'DT', 'ggplot2', 'leaflet', 'mockery', 'plotly',
  'rcmdcheck', 'rmarkdown', 'sass', 'shiny.router', 'stringi',
  'testthat', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking: 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'shiny', 'shinyWidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools', 'shinyjs'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'heatmaply', 'shiny', 'htmltools', 'plotly', 'dplyr', 'rmarkdown',
  'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shinyWidgets’

Package which this enhances but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plotly', 'shiny', 'dplyr', 'tidyr', 'stringr', 'nanotime',
  'shinyjs', 'htmltools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'shiny'

Packages suggested but not available for checking:
  'covr', 'googleLanguageR', 'lintr', 'rcmdcheck', 'rmarkdown',
  'spelling', 'testthat', 'quarto'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'testthat', 'lintr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'shiny', 'lubridate'

Packages suggested but not available for checking:
  'fs', 'readr', 'rhino', 'rjson', 'shinyAce', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinydashboard', 'shinycssloaders', 'readxl', 'mirt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'difR', 'dplyr', 'ggplot2', 'lme4', 'mirt', 'tidyr'

Packages suggested but not available for checking:
  'difNLR', 'DT', 'ggdendro', 'latticeExtra', 'plotly', 'rmarkdown',
  'shiny', 'shinyBS', 'shinydashboard', 'shinyjs', 'SIAmodules',
  'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools', 'htmlwidgets'

Packages suggested but not available for checking:
  'ggplot2', 'highcharter', 'rmarkdown', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'shiny'

Packages suggested but not available for checking:
  'htmltools', 'rmarkdown', 'shinyAce', 'shinydisconnect', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyjs', 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'httpuv', 'later'

Package suggested but not available for checking: ‘websocket’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'fastLink', 'gender', 'ggplot2', 'ggvenn', 'golem', 'haven',
  'htmlwidgets', 'lubridate', 'readxl', 'shiny', 'shinydashboard',
  'shinydashboardPlus', 'shinyWidgets', 'tidyr', 'vroom'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'archive', 'fs'

Packages suggested but not available for checking:
  'httpuv', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'httpuv', 'scales', 'stringr', 'svglite',
  'vroom', 'websocket', 'xml2'

Packages suggested but not available for checking:
  'htmltools', 'lubridate', 'rmarkdown', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmltools', 'shiny', 'nanotime', 'digest', 'anytime'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'RSQLite', 'googledrive'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'htmltools', 'DT', 'RSQLite', 'billboarder', 'scrypt'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'sass'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'shinyjqui', 'shinythemes', 'uchardet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fastmap', 'fs', 'htmltools', 'shiny', 'sourcetools', 'styler'

Packages suggested but not available for checking:
  'stringr', 'rmarkdown', 'testthat', 'shinyAce', 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'shiny', 'argonDash', 'argonR', 'shinyjs', 'shinyWidgets',
  'dygraphs', 'plotly', 'sparklyr', 'tidyr', 'DT', 'ggplot2',
  'shinycssloaders', 'lubridate'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools', 'gplots'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'shinyWidgets', 'apexcharter', 'ggplot2',
  'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'DT', 'htmltools', 'parsnip', 'plotly', 'scales',
  'shiny', 'shinydashboard', 'tidyr', 'tune', 'yardstick'

Packages suggested but not available for checking:
  'covr', 'finetune', 'modeldata', 'rmarkdown', 'shinytest',
  'spelling', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'RDML', 'shiny', 'stringr', 'plotly'

Package suggested but not available for checking: ‘chipPCR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'shinythemes', 'styler', 'uchardet', 'shinyjqui', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinythemes', 'shinyWidgets', 'Ternary'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shinyjs', 'shiny', 'shinyWidgets', 'dplyr', 'dbplyr', 'RSQLite',
  'stringr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'pander', 'readr', 'shiny', 'stringr', 'styler', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'mockery', 'spelling', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shinyjs', 'shiny', 'shinyBS', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'shinyjs'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'pivottabler', 'shiny', 'openxlsx', 'colourpicker', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'shiny', 'ggplot2', 'DT', 'shinythemes',
  'ggthemes', 'Epi'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'shiny', 'htmltools', 'readr', 'urltools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinydashboard', 'shinyWidgets', 'miniUI', 'shinyjs',
  'shinyFiles', 'shinyalert', 'colourpicker', 'plotly', 'ggplot2',
  'stringi', 'stringr', 'styler', 'dplyr', 'reshape2', 'fs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fontawesome', 'htmltools', 'reactable', 'scales', 'shiny',
  'shinyjs', 'stringi', 'stringr'

Packages suggested but not available for checking:
  'pkgload', 'rmarkdown', 'sortable', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'httpuv', 'fontawesome', 'htmltools', 'sourcetools', 'later',
  'promises', 'fastmap', 'bslib', 'cachem'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2', 'future', 'dygraphs', 'ragg',
  'sass'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'leaflet', 'lintr', 'mockery', 'rcmdcheck', 'rmarkdown', 'styler',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'recipes', 'dplyr', 'stringr', 'shiny', 'miniUI', 'shinyWidgets',
  'shinyglide', 'sortable', 'DT', 'tidyr', 'esquisse'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'dplyr', 'lubridate', 'scrypt', 'shinyjs', 'stringi'

Packages suggested but not available for checking:
  'covr', 'DT', 'devtools', 'emayili', 'gmailr', 'googledrive',
  'googlesheets4', 'rmarkdown', 'RSQLite', 'shinytest2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rgl', 'shiny'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'covr', 'lintr', 'rcmdcheck', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'shiny', 'shinydashboard', 'tm', 'wordcloud', 'caret',
  'plotly', 'e1071'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sbm', 'colourpicker', 'dplyr', 'DT', 'flextable', 'fresh',
  'ggplot2', 'golem', 'patchwork', 'rmarkdown', 'shiny', 'shinyalert',
  'shinydashboard', 'stringr', 'visNetwork'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Package suggested but not available for checking: ‘timevis’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fontawesome', 'htmltools', 'reactR'

Packages suggested but not available for checking:
  'bslib', 'jsTreeR', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'semantic.assets', 'shiny'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'DT', 'leaflet', 'lintr', 'mockery', 'plotly',
  'rcmdcheck', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'digest', 'shiny'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Found the following files/directories:
  ‘.shiny_run’ ‘shinyShortcut.desktop’
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2', 'shiny'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'bayesplot', 'colourpicker', 'DT', 'dygraphs', 'ggplot2',
  'reshape2', 'rstan', 'shinyjs', 'shinythemes', 'threejs'

Packages suggested but not available for checking:
  'cmdstanr', 'posterior', 'rmarkdown', 'rsconnect', 'rstanarm',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools', 'shinyWidgets'

Packages suggested but not available for checking: 'rmarkdown', 'qpdf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'sass', 'htmltools'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking: 'fontawesome', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'dplyr', 'lubridate', 'odbc', 'RSQLite', 'shiny', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'DT', 'plotly', 'plumber', 'RMariaDB', 'scales',
  'semantic.dashboard', 'shiny.semantic', 'shinyjs', 'testthat',
  'timevis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'DescTools', 'forecast', 'ggplot2', 'ggprism', 'ggpubr',
  'ggtree', 'golem', 'shiny', 'shinydashboard', 'shinyjs', 'stringr',
  'treeio', 'ggpmisc'

Packages suggested but not available for checking:
  'conflicted', 'htmltools', 'prettydoc', 'rmarkdown', 'testthat',
  'yulab.utils'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'testthat', 'chromote', 'fs', 'rmarkdown', 'shiny'

Packages suggested but not available for checking:
  'ggplot2', 'plotly', 'shinyWidgets', 'shinytest', 'shinyvalidate',
  'usethis', 'vdiffr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'readr', 'stringr', 'tidyr', 'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'htmlwidgets', 'httpuv', 'shiny', 'testthat'

Packages suggested but not available for checking:
  'flexdashboard', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmltools', 'reactR', 'shiny', 'fontawesome'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'htmlwidgets', 'stringr', 'promises'

Packages suggested but not available for checking:
  'testthat', 'shinytest', 'data.tree'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'anytime', 'bslib', 'sass', 'shiny', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'covr', 'ggplot2', 'DT', 'scales', 'shinydashboard',
  'shinydashboardPlus'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'future', 'shiny'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘PBSmapping’

Packages suggested but not available for checking:
  'apcluster', 'ape', 'dbscan', 'e1071', 'ips', 'kernlab', 'phangorn',
  'StatMatch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages required but not available:
  'ggplot2', 'ggrepel', 'ggridges', 'ggspatial', 'sf', 'terra'

Packages suggested but not available for checking:
  'covr', 'elevatr', 'rmarkdown', 'testthat', 'vdiffr', 'rnaturalearth'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ggplot2', 'ggrepel', 'tidyr', 'stringr'

Packages suggested but not available for checking:
  'MplusAutomation', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TAM', 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'sirt', 'testthat', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'LambertW', 'tidyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘CompQuadForm’

Packages suggested but not available for checking:
  'energy', 'shiny', 'interp', 'MBA', 'bs4Dash'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Errors in running code in vignettes:
when running code in ‘introduction.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘introduction.Rmd’ using ‘UTF-8’... failed to complete the test
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'stochvol', 'shrinkTVP', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stochvol', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'flare', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
checkRd: (-1) shutterplot.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.'
       |                       ^
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'difNLR', 'dplyr', 'DT', 'ggplot2', 'lme4', 'mirt', 'mirtCAT',
  'plotly', 'scales', 'shiny', 'ShinyItemAnalysis', 'shinyjs',
  'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘edgeR’
Note: skipping ‘SIBER.Rnw’ due to unavailable dependencies: 'edgeR'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'hdrcde', 'rjags', 'spatstat.geom', 'tidyr', 'dplyr', 'ggplot2'

Packages suggested but not available for checking: 'rmarkdown', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'memoise', 'multicool'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'igraph', 'ggmap', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'rvest', 'stringr', 'xml2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pcalg', 'igraph', 'RBGL'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plotly', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'ggpubr', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) drr.Rd:36: Lost braces; missing escapes or markup?
    36 |   \code{drr} {is Rosin - Rammler probability density function}\cr
       |              ^
checkRd: (-1) drr.Rd:37: Lost braces; missing escapes or markup?
    37 |   \code{urr} {is Rosin - Rammler cumulative distribution function (CDF) representing undersize mass fraction}\cr
       |              ^
checkRd: (-1) drr.Rd:38: Lost braces
    38 |   \code{orr} {is Rosin - Rammler complementary CDF representing oversize mass fraction ie. relative remainder on the sieve with the mesh size \code{x}}\cr
       |              ^
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'rmarkdown', 'stringr', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fastdigest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'survey'

Packages suggested but not available for checking:
  'car', 'GGally', 'ggplot2', 'kableExtra', 'readxl', 'reshape2',
  'rmarkdown', 'tidyr', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'R.rsp', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'maxLik'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmlwidgets', 'dplyr', 'shiny', 'igraph', 'htmltools', 'scales',
  'crosstalk'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cowplot', 'dplyr', 'furrr', 'future', 'ggplot2', 'ggpubr', 'NMF',
  'Rcpp', 'tidyr'

Packages suggested but not available for checking:
  'BSgenome', 'BSgenome.Hsapiens.UCSC.hg19', 'covr', 'digest', 'GenSA',
  'ggalluvial', 'ggcorrplot', 'ggfittext', 'ggplotify', 'ggrepel',
  'patchwork', 'pheatmap', 'reticulate', 'rmarkdown', 'roxygen2',
  'scales', 'synchronicity', 'testthat', 'UCSCXenaTools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'ggplot2', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rsamtools', 'SeuratObject', 'dplyr', 'future', 'future.apply',
  'ggplot2', 'tidyr', 'patchwork', 'stringi', 'RcppRoll', 'scales',
  'Rcpp'

Packages suggested but not available for checking:
  'Seurat', 'ggforce', 'ggrepel', 'ggseqlogo', 'testthat', 'chromVAR',
  'TFBSTools', 'motifmatchr', 'BSgenome', 'shiny', 'miniUI',
  'rtracklayer', 'biovizBase', 'qlcMatrix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'Seurat', 'RJSONIO', 'igraph'

Packages suggested but not available for checking: 'rhdf5', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'seqinr', 'shiny', 'Rcpp'

Packages suggested but not available for checking:
  'DT', 'rmarkdown', 'shinythemes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'gplots', 'survminer', 'ggplot2'

Package suggested but not available for checking: ‘Rmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reshape2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'ggraph', 'ompr', 'ompr.roi', 'rmarkdown',
  'ROI.plugin.glpk', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'survcomp', 'GSVA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘scales’

Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'ggrepel', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'biclust', 'gplots', 'ComplexHeatmap', 'GSVA'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'RankProd'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) sig.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'ape', 'phylobase', 'phyext2', 'phyloseq'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CVXR', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat', 'tidyfst'
Running examples in ‘siie-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: p_sie
> ### Title: Get data for p-SIE curve
> ### Aliases: p_sie
> 
> ### ** Examples
> 
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'sf', 'lme4', 'raster', 'ggplot2', 'ggforce', 'fasterize',
  'reshape2', 'fields'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'reshape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'gibble', 'decido', 'unjoin'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'trip', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Thresher’

Packages suggested but not available for checking:
  'rmarkdown', 'Mercator', 'Umpire'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'hdi', 'SIS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'readr'

Packages suggested but not available for checking:
  'prettydoc', 'testthat', 'gplots', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'prettydoc', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spam', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'stringr', 'cowplot', 'furrr',
  'progressr'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'pkgdown', 'spelling', 'haven', 'vdiffr',
  'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'tidyr', 'Rcpp', 'RcppXPtrUtils', 'RcppArmadillo'

Packages suggested but not available for checking: 'GGally', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Argument items with no description in Rd file 'estThetaRow.Rd':
  ‘theta’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'igraph', 'stringr'

Packages suggested but not available for checking:
  'copula', 'ggplot2', 'Hmisc', 'bindata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping vignette re-building
Packages suggested but not available for checking:
  'bookdown', 'covr', 'multgee', 'rmarkdown', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Running examples in ‘SimCorMultRes-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rmult.acl
> ### Title: Simulating Correlated Ordinal Responses Conditional on a
> ###   Marginal Adjacent-Category Logit Model Specification
> ### Aliases: rmult.acl
> 
> ### ** Examples
> 
> ## See Example 3.4 in the Vignette.
> beta_intercepts <- c(3, 1, 2)
> beta_coefficients <- c(1, 1)
> sample_size <- 500
> cluster_size <- 3
> set.seed(321)
> x1 <- rep(rnorm(sample_size), each = cluster_size)
> x2 <- rnorm(sample_size * cluster_size)
> xdata <- data.frame(x1, x2)
> identity_matrix <- diag(4)
> equicorrelation_matrix <- toeplitz(c(1, rep(0.95, cluster_size - 1)))
> latent_correlation_matrix <- kronecker(equicorrelation_matrix,
+   identity_matrix)
> simulated_ordinal_dataset <- rmult.acl(clsize = cluster_size,
+   intercepts = beta_intercepts, betas = beta_coefficients,
+   xformula = ~ x1 + x2, xdata = xdata,
+   cor.matrix = latent_correlation_matrix)
> suppressPackageStartupMessages(library("multgee"))
Error in library("multgee") : there is no package called ‘multgee’
Calls: suppressPackageStartupMessages -> withCallingHandlers -> library
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Errors in running code in vignettes:
when running code in ‘SimCorMultRes.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘SimCorMultRes.Rmd’ using ‘UTF-8’... failed to complete the test
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'SimMultiCorrData', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'bookdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'qtl', 'rmarkdown', 'testthat', 'devtools', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'Rfast'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr', 'ggplot2', 'igraph', 'ggforce',
  'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'beepr', 'future', 'future.apply', 'progressr'

Packages suggested but not available for checking:
  'ggplot2', 'tidyr', 'shiny', 'copula', 'extraDistr', 'job',
  'future.batchtools', 'FrF2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rgl', 'rmarkdown'
checkRd: (-1) fptsde1d.Rd:69: Lost braces; missing escapes or markup?
    69 | \code{dfptsde1d} {gives the density estimate of fpt.}
       |                  ^
checkRd: (-1) fptsde1d.Rd:70: Lost braces; missing escapes or markup?
    70 | \code{fptsde1d} {generates random of fpt.}
       |                 ^
checkRd: (-1) fptsde2d.Rd:75: Lost braces; missing escapes or markup?
    75 | \code{dfptsde2d} {gives the kernel density approximation for fpt.}
       |                  ^
checkRd: (-1) fptsde2d.Rd:76: Lost braces; missing escapes or markup?
    76 | \code{fptsde2d} {generates random of fpt.}
       |                 ^
checkRd: (-1) fptsde3d.Rd:77: Lost braces; missing escapes or markup?
    77 | \code{dfptsde3d} {gives the marginal kernel density approximation for fpt.}
       |                  ^
checkRd: (-1) fptsde3d.Rd:78: Lost braces; missing escapes or markup?
    78 | \code{fptsde3d} {generates random of fpt.}
       |                 ^
checkRd: (-1) rsde1d.Rd:54: Lost braces
    54 | \code{dsde1d} {gives the transition density estimate of \code{X(t-s) | X(s)=x0}.}
       |               ^
checkRd: (-1) rsde1d.Rd:55: Lost braces
    55 | \code{rsde1d} {generates random of \code{X(t-s) | X(s)=x0}.}
       |               ^
checkRd: (-1) rsde2d.Rd:46: Lost braces
    46 | \code{dsde2d} {gives the bivariate density approximation for \code{(X(t-s),Y(t-s) | X(s)=x0,Y(s)=y0)}.}
       |               ^
checkRd: (-1) rsde2d.Rd:47: Lost braces
    47 | \code{rsde2d} {generates random of the couple \code{(X(t-s),Y(t-s) | X(s)=x0,Y(s)=y0)}.}
       |               ^
checkRd: (-1) rsde3d.Rd:46: Lost braces
    46 | \code{dsde3d} {gives the trivariate density approximation \code{(X(t-s),Y(t-s),Z(t-s) | X(s)=x0,Y(s)=y0,Z(s)=z0)}.}
       |               ^
checkRd: (-1) rsde3d.Rd:47: Lost braces
    47 | \code{rsde3d} {generates random of the \code{(X(t-s),Y(t-s),Z(t-s) | X(s)=x0,Y(s)=y0,Z(s)=z0)}.}
       |               ^
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘minqa’

Package suggested but not available for checking: ‘FME’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘magick’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'tidyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bigmemory', 'Rcpp', 'igraph', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggplot2', 'ggpmisc', 'ggpubr', 'lubridate', 'plyr',
  'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'popkin', 'bnpsd', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'future.apply', 'memoise', 'progressr', 'RcppSimdJson'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'broom', 'future.apply'

Packages suggested but not available for checking:
  'lme4', 'testthat', 'shiny', 'e1071', 'ggplot2', 'tidyr', 'geepack',
  'rmarkdown', 'future', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘database.csv’ ‘output.csv’ ‘output_clst.csv’
Packages required but not available: 'dplyr', 'furrr', 'tidyr'

Packages suggested but not available for checking:
  'plyr', 'future', 'rmarkdown', 'pkgdown', 'covr', 'testthat',
  'kableExtra', 'ggplot2', 'broom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bindata', 'fastGHQuad', 'CompQuadForm', 'ICSKAT'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'furrr', 'future'

Packages suggested but not available for checking:
  'prodlim', 'rmarkdown', 'rpact', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stringi'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rvinecopulib', 'bde', 'ks', 'np', 'extraDistr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'devtools', 'testthat'
checkRd: (-1) internal.statistics.one.lm.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) internal.statistics.one.lm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_simitation.Rmd’ using knitr

Quitting from lines 38-39 [unnamed-chunk-2] (Introduction_to_simitation.Rmd)
Error: processing vignette 'Introduction_to_simitation.Rmd' failed with diagnostics:
there is no package called 'devtools'
--- failed re-building ‘Introduction_to_simitation.Rmd’

--- re-building ‘Introduction_to_simitation_2.Rmd’ using knitr
--- finished re-building ‘Introduction_to_simitation_2.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_simitation.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'arm', 'ggplot2', 'plyr', 'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bigmemory', 'digest', 'dplyr', 'gganimate', 'ggplot2',
  'htmlwidgets', 'ks', 'plotly'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plotly', 'stringr', 'Sie2nts'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘simmer’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'simmer', 'ggplot2', 'DiagrammeR', 'dplyr', 'tidyr', 'scales'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'simmer.plot', 'testthat', 'rmarkdown', 'rticles'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BSgenome’

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg38’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'R2jags', 'ggplot2', 'compositions', 'reshape2', 'viridis',
  'bayesplot', 'Rcpp', 'GGally', 'RcppArmadillo', 'RcppDist'

Packages suggested but not available for checking:
  'rmarkdown', 'readxl', 'testthat', 'covr', 'vdiffr', 'ggnewscale'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'randomForestSRC'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'SimDesign', 'miniPCH', 'nph', 'nphRCT', 'car', 'dplyr', 'stringr',
  'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'ggplot2', 'patchwork', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'od', 'sf'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'Rcgmin', 'Rvmmin', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Unknown packages ‘Rvmmin’, ‘Rcgmin’ in Rd xrefs
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages suggested but not available for checking:
  'ggplot2', 'kableExtra', 'precrec', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'ggplot2', 'stringr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'testthat', 'vroom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'

Package which this enhances but not available for checking: ‘batchtools’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'ggplot2', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'devtools', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RSQLite', 'rjson'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'mockery', 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘verification’
Packages required but not available: 'SNPRelate', 'gdsfmt'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjson’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'htmlwidgets', 'leaflet', 'leafem', 'leafpop', 'scales',
  'sf', 'shiny', 'snakecase', 'stars', 'stringr', 'tidyr', 'viridis',
  'ggplot2'

Packages suggested but not available for checking:
  'gt', 'patchwork', 'rgdal', 'rgeos', 'rmarkdown', 's2', 'tidytext',
  'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simplexreg.Rcheck/00install.out’ for details.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'igraph', 'sanic', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'broom'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lme4', 'dplyr', 'tidyr', 'stringr', 'jmvcore',
  'patchwork'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'readr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'AlphaSimR', 'extraDistr'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppArmadillo', 'e1071', 'VIM', 'EnvStats', 'ranger',
  'wrswoR', 'xgboost'

Packages suggested but not available for checking:
  'haven', 'stringr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'broom', 'dplyr', 'furrr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'VIM', 'glmnet', 'missForest'

Packages suggested but not available for checking: 'rmarkdown', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'DT'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'ontologySimilarity'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FrF2', 'ggplot2', 'miniUI', 'reshape2', 'scales', 'shiny', 'tidyr',
  'testthat'

Packages suggested but not available for checking: 'covr', 'DoE.base'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'shiny'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'shinyBS', 'shinythemes',
  'shinyWidgets', 'testthat', 'tidyr', 'egg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

Packages suggested but not available for checking:
  'adehabitatLT', 'moveHMM', 'testthat', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lme4', 'pbkrtest', 'plyr', 'RLRsim', 'stringr', 'car', 'lmerTest'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'Hmisc', 'copula'
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'Amelia', 'OpenMx', 'copula'
checkRd: (-1) SimDataDist-class.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) SimDataDist-class.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) createData.Rd:7: Lost braces
     7 | 	This function can be used to create data from a set of parameters created from \code{\link{draw}}, called a code{paramSet}. This function is used internally to create data, and is available publicly for accessibility and debugging.
       |                                                                                                                         ^
checkRd: (-1) exportData.Rd:7: Lost braces
     7 | 	This function can be used to export data created from a set of parameters created from \code{\link{draw}}, called a code{paramSet}. This function can export data to be analyzed with either Mplus or LISREL.
       |                                                                                                                                 ^
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘future.apply’

Packages suggested but not available for checking:
  'covr', 'future', 'progressr', 'rjags', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'dplyr', 'tidyr', 'stringr', 'testthat',
  'covr', 'badger'
Running examples in ‘simstandard-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_composite_scores
> ### Title: For each latent variable in a structural model, add a composite
> ###   score to observed data.
> ### Aliases: add_composite_scores
> 
> ### ** Examples
> 
> library(simstandard)
> # lavaan model
> m = "
+ X =~ 0.9 * X1 + 0.8 * X2 + 0.7 * X3
+ "
> 
> # Make data.frame for two cases
> d <- data.frame(
+   X1 = c(1.2, -1.2),
+   X2 = c(1.5, -1.8),
+   X3 = c(1.8, -1.1))
> 
> # Compute composite scores for two cases
> add_composite_scores(d, m)
Error in loadNamespace(x) : there is no package called ‘dplyr’
Calls: add_composite_scores ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mvnfast', 'Rcpp', 'fastglm', 'pbv'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'hedgehog', 'rmarkdown', 'scales',
  'testthat', 'gtsummary', 'survminer', 'katex', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'stars', 'plotly'

Packages suggested but not available for checking:
  'fields', 'rmarkdown', 'flexdashboard', 'shiny', 'crosstalk',
  'htmltools', 'viridis', 'lme4', 'ggplot2', 'INLA', 'INLAspacetime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'flexsurv', 'rmarkdown', 'rstpm2', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'miscTools', 'car', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'broom', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'popkin', 'testthat', 'rmarkdown', 'bnpsd'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'doFuture', 'future'

Packages suggested but not available for checking:
  'bshazard', 'covr', 'dplyr', 'ggplot2', 'gsDesign', 'gsDesign2',
  'rmarkdown', 'survMisc', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'scales', 'broom', 'dplyr', 'tidyr', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘ks’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'reshape2', 'reticulate', 'scales', 'terra'

Packages suggested but not available for checking:
  'magick', 'contoureR', 'testthat', 'raster', 'openair'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'digest', 'ggplot2', 'rmarkdown', 'testthat', 'glmnet'
checkRd: (-1) add_bold.Rd:15: Lost braces; missing escapes or markup?
    15 | For example, in latex it would take "2" and output "{\\bf 2}"; in html
       |                                                     ^
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Got this Sys.setenv line from https://github.com/luckyrandom/cmaker/blob/b85813ac2b7aef69932eca8fbb4fa0ec225e0af0/tests/testthat.R
  > # so that devtools:check() won't hang.
  > # setting R_TESTS to empty string because of
  > # https://github.com/hadley/testthat/issues/144
  > # revert this when that issue in R is fixed.
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'pcaPP', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘spelling’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘plyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'arrangements', 'igraph', 'crqa'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringi’

Packages suggested but not available for checking:
  'rcmdcheck', 'shiny', 'miniUI', 'usethis', 'fs', 'details',
  'roxygen2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'bookdown', 'lme4', 'lmerTest', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'shiny', 'shinytest', 'stringr', 'rvest', 'xml2',
  'ggplot2', 'purrrlyr', 'testthat', 'rmarkdown', 'cleanrmd',
  'kableExtra', 'covr', 'readxl', 'janitor', 'rclipboard'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'cleanrmd'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'SeuratObject', 'cowplot', 'wrswoR',
  'sparseMatrixStats', 'ComplexHeatmap', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lamW’

Packages suggested but not available for checking: 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ICtest', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'COVIDIBGE', 'PNADcIBGE', 'PNDSIBGE', 'PNSIBGE'

Packages suggested but not available for checking:
  'convey', 'dplyr', 'readr', 'readxl', 'srvyr', 'survey'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spatstat', 'spatstat.geom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'HTSSIP', 'dplyr', 'phyloseq', 'plyr', 'stringr', 'tidyr', 'ggplot2',
  'ggpubr', 'DESeq2'

Packages suggested but not available for checking:
  'rmarkdown', 'EBImage', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Package required but not available: ‘EFA.MRFA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'systemfit', 'igraph', 'stringr', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'CDM', 'Rcpp', 'TAM', 'pbv', 'RcppArmadillo'

Packages suggested but not available for checking:
  'igraph', 'miceadds', 'minqa', 'mirt', 'nloptr', 'optimx', 'pbv',
  'survey'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ROCR', 'ggplot2', 'glmnet', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'ranger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'reticulate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RSpectra', 'glmnet', 'Boruta', 'CORElearn', 'dplyr', 'mixOmics',
  'ranger', 'tidyr', 'adjclust', 'ggplot2', 'aricode', 'dendextend',
  'reshape2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'openxlsx', 'shiny', 'stringi', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggbeeswarm', 'ggplot2', 'ggrepel', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'rsample', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'MatchIt', 'dplyr', 'ggplot2', 'reshape2', 'stringr', 'tidyr',
  'scales'

Packages suggested but not available for checking: 'rmarkdown', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ymlthis', 'stringr', 'lubridate', 'rmarkdown'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'pkgdown', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rgl', 'igraph', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sitree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'gdalUtilities', 'lubridate', 'Rcpp', 'sf', 'slider',
  'terra', 'tidyr', 'torch', 'RcppArmadillo'

Packages suggested but not available for checking:
  'caret', 'dendextend', 'dtwclust', 'DiagrammeR', 'digest', 'e1071',
  'exactextractr', 'FNN', 'future', 'gdalcubes', 'geojsonsf',
  'ggplot2', 'kohonen', 'leafem', 'leaflet', 'luz', 'openxlsx',
  'randomForestExplainer', 'RcppArmadillo', 'scales', 'stars',
  'stringr', 'supercells', 'testthat', 'tmap', 'torchopt', 'xgboost',
  'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'pROC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'e1071', 'scales', 'testthat'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'haven', 'sjmisc', 'sjPlot', 'rmarkdown', 'snakecase',
  'testthat'
Running examples in ‘sjlabelled-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_labels
> ### Title: Add, replace or remove value labels of variables
> ### Aliases: add_labels replace_labels remove_labels
> 
> ### ** Examples
> 
> # add_labels()
> data(efc)
> get_labels(efc$e42dep)
[1] "independent"          "slightly dependent"   "moderately dependent"
[4] "severely dependent"  
> 
> x <- add_labels(efc$e42dep, labels = c(`nothing` = 5))
Error in get_na_helper(x, as.tag) : 
  Package 'haven' required for this function. Please install it.
Calls: add_labels ... add_labels_helper -> get_na -> get_na.default -> get_na_helper
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'ggplot2', 'haven', 'mice', 'sjPlot', 'sjstats', 'rmarkdown',
  'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'scales', 'sjmisc', 'sjstats', 'tidyr'

Packages suggested but not available for checking:
  'brms', 'car', 'cowplot', 'effects', 'haven', 'ggrepel', 'glmmTMB',
  'ggridges', 'lme4', 'rmarkdown', 'rstanarm', 'survey', 'TMB',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'ggplot2', 'ggtern'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'lme4', 'modelr', 'sjmisc', 'tidyr'

Packages suggested but not available for checking:
  'brms', 'car', 'ggplot2', 'sjPlot', 'survey', 'rstan', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kableExtra', 'rvest', 'xml2'

Packages suggested but not available for checking:
  'lintr', 'lme4', 'rmarkdown', 'sjPlot', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'readr', 'corrr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RSpectra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'CompQuadForm', 'bazar', 'Rfast', 'caret', 'osqp',
  'ROI.plugin.qpoases'

Packages suggested but not available for checking:
  'rmarkdown', 'devtools', 'car', 'testthat', 'arrangements', 'gmp',
  'Rmpfr', 'cubature'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package vignette without corresponding tangle output:
  ‘skellam.rnw’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'downloader', 'imager', 'stringr', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'phangorn'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ivreg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny', 'V8'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringi’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'furrr', 'future', 'ggplot2', 'ggrepel', 'haven',
  'MomTrunc', 'relliptical', 'TruncatedNormal'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'ggpubr', 'reshape2', 'FastGaSP', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'repr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'dtplyr', 'haven', 'lubridate', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'extraDistr', 'mcmcse', 'spam'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package which this enhances but not available for checking: ‘kmndirs’
Unavailable namespace imported from by a ':::' call: ‘kmndirs’
  See the note in ?`:::` about the use of this operator.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'plyr', 'Rcpp', 'RcppParallel', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lme4', 'Rcpp', 'future', 'car', 'viridis', 'lmerTest', 'scales',
  'doRNG', 'doFuture', 'progressr', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'mbest', 'ggplot2', 'rintrojs', 'shinythemes', 'shiny',
  'shinyjs', 'gt', 'shinytest2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'tidyr', 'rnaturalearth', 'dplyr', 'ggplot2', 'terra', 'scales',
  'rmarkdown', 'covr', 'testthat'
Running ‘testthat.r’ [0s/0s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
  > # Run all unit tests
  > 
  > # This is a wrapper around all the tests specified
  > # in the tests/testthat directory. These tests are visible
  > # to users and serve as small examples as well.
  > testthat::test_check("skylight")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available:
  'igraph', 'dplyr', 'ggplot2', 'ggrepel', 'stringr', 'geosphere',
  'leaflet'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'kableExtra', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'swephR', 'oce', 'MESS'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cachem', 'dplyr', 'memoise'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'svglite', 'testthat', 'texPreview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package which this enhances but not available for checking: ‘spam’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘pheatmap’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lme4', 'globaltest', 'reshape2', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppArmadillo', 'fda', 'fda.usc'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'forecast', 'imputeTS', 'MTS', 'TSclust', 'tsoutliers'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'reda', 'reReg', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'reshape2', 'plyr', 'stringr', 'viridis'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'jrc', 'cowplot', 'httpuv', 'scales', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'lme4', 'rmarkdown', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'e1071', 'ggplot2', 'Hmisc', 'reshape2', 'stringr', 'caret'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'readr', 'reticulate', 'tidyr', 'ijtiff', 'ape',
  'shinyWidgets', 'shiny', 'scales'

Packages suggested but not available for checking:
  'testthat', 'sf', 'stars', 'rnaturalearth', 'gganimate', 'rmarkdown',
  'admixr', 'units', 'magick', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'car', 'mosaic'
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'CCA', 'Hmisc', 'car', 'mosaic'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'fdapace'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'captioner', 'rcrossref', 'rmarkdown'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SLHD.Rcheck/00install.out’ for details.
Packages required but not available: 'htmltools', 'xml2', 'htmlwidgets'

Packages suggested but not available for checking:
  'pdftools', 'rmarkdown', 'svglite', 'leaflet', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages suggested but not available for checking:
  'covr', 'dplyr', 'lubridate', 'rmarkdown', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/slider.Rcheck/00install.out’ for details.
Packages required but not available: 'htmltools', 'htmlwidgets', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nonlinearTseries’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'lme4', 'jmcm', 'ggplot2', 'testthat', 'rmarkdown'
checkRd: (-1) fit_slim.Rd:24: Lost braces; missing escapes or markup?
    24 | sum(x' V^{-1} (y - x beta)) = 0 as the covariance V tends from V[, , 1] +
       |          ^
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'glmnet', 'bigmemory'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ROCR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'glmnet', 'mice', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'caret', 'covr', 'dplyr', 'rmarkdown', 'scales', 'spelling',
  'stringr', 'testthat', 'tidyr', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'memoise'

Packages suggested but not available for checking:
  'rmarkdown', 'bookdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
checkRd: (-1) slp-package.Rd:38: Escaped LaTeX specials: \&
Packages suggested but not available for checking: 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ibd', 'gmp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'covr'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'e1071', 'Hmisc', 'weights', 'wordcloud', 'candisc'

Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'smacof', 'minqa', 'ProjectionBasedClustering', 'weights'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore', 'smerc'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘SSBtools’

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra', 'sdcHierarchies', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flextable', 'ggplot2', 'ggtext', 'patchwork', 'reticulate',
  'rmarkdown'

Packages suggested but not available for checking: 'gurobi', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'matlib', 'pryr', 'igraph', 'ROCR'

Package suggested but not available for checking: ‘faraway’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'nloptr', 'Rcpp', 'RcppParallel', 'EnvStats', 'RcppGSL'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'rhdf5', 'rvest', 'xml2'

Packages suggested but not available for checking:
  'rgdal', 'rmarkdown', 'roxygen2', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package vignettes without corresponding tangle output:
  ‘DTR.Rmd’
  ‘SST.Rmd’
Packages required but not available:
  'ggplot2', 'scales', 'rmarkdown', 'GGally', 'qpdf'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'htmltools', 'rjson'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'sf'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'FNN'

Packages suggested but not available for checking:
  'stringr', 'rmarkdown', 'ROCR', 'caret', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'memoise', 'tidyr'

Packages suggested but not available for checking: 'devtools', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'bootSVD', 'Rfast', 'RSpectra', 'vroom', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sva', 'isva', 'RSpectra', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘sqldf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'EnvStats', 'future', 'pROC', 'igraph', 'furrr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr', 'reshape2', 'shadowtext',
  'tidyverse', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'
Malformed Title field: should not end in a period.
checkRd: (-1) customerRetentionDemographics.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) customerRetentionDemographics.Rd:11: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:12: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:13: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:15: Escaped LaTeX specials: \$
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) trlong.Rd:17: Lost braces
    17 |     \item{\code{resp}}{a factor indicating the transport mode choice, and \code{B} denotes taking the bus, code{D} denotes driving one's own vehicle, \code{F} denotes getting a ride with a friend, \code{O} denotes other, and \code{W} denotes walking}
       |                                                                                                                ^
Packages required but not available:
  'GSVA', 'samr', 'e1071', 'pheatmap', 'survminer'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'fastDummies', 'ggplot2', 'gt', 'mice', 'naniar',
  'pROC', 'stringr', 'tableone', 'tidyr'

Packages suggested but not available for checking:
  'gtsummary', 'reactR', 'reactable', 'rmarkdown', 'survminer',
  'usethis', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'paws.compute', 'paws.developer.tools', 'paws.machine.learning',
  'paws.management', 'paws.storage', 'paws.security.identity'

Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'tableone', 'dplyr', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'lintr', 'testthat', 'SpatialEpi', 'rmarkdown', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                  ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                            ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                          ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                                    ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                              ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                        ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                      ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                                ^
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘fs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'Hmisc', 'weights'

Packages suggested but not available for checking:
  'rmarkdown', 'mlmRev', 'R.rsp', 'Kernelheaping'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'extraDistr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'xml2', 'rmarkdown', 'tidyr', 'hdrcde',
  'ggplot2', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'sf', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'sf'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'htmlwidgets'

Packages suggested but not available for checking:
  'SMITIDstruct', 'shiny', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'mvnfast'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spdep', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘seqinr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'seqinr', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'rvest', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘ggplot2’
Skipping checking math rendering: package 'V8' unavailable
Auto-generated content requiring editing in Rd file 'smoke-package.Rd':
  \details: ‘...the package, including the most important ~~ ~~ functions ~~’
Packages required but not available: 'ggplot2', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'plotly', 'reticulate', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

Packages suggested but not available for checking: 'testthat', 'demography'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggplot2', 'stringr', 'tidyr', 'toOrdinal'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'SpatialVx', 'fields'
checkRd: (-1) hoods2dsmooth.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) kernel2dmeitsjer.Rd:75: Escaped LaTeX specials: \&
checkRd: (-1) kernel2dsmooth.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) smoothie-package.Rd:42: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'greybox', 'Rcpp', 'nloptr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'legion', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'terra', 'units'

Packages suggested but not available for checking:
  'covr', 'lwgeom', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/smoothSurv.Rcheck/00install.out’ for details.
Package required but not available: ‘logcondens’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rfast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'future', 'future.apply', 'progressr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'RcppArmadillo', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fields', 'lubridate', 'terra', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'dbscan', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'RANN', 'Rfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'revdbayes', 'testthat', 'rmarkdown', 'SuppDists'
Running examples in ‘smovie-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: correlation
> ### Title: Sampling distribution of the correlation coefficient movie
> ### Aliases: correlation
> 
> ### ** Examples
> 
> correlation(rho = 0.8)
Error: the SuppDists package is needed. Please install it.
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'imager', 'ggplot2', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rgl', 'interp'
checkRd: (-1) sm.rm.Rd:50-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sm.rm.Rd:55-59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sm.rm.Rd:60-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sm.rm.Rd:64-67: Lost braces in \itemize; meant \describe ?
Objects in \usage without \alias in Rd file 'sm-internal.Rd':
  ‘sm.check.data’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘sm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sm.surface3d
> ### Title: Adding a regression surface to an rgl plot.
> ### Aliases: sm.surface3d
> ### Keywords: nonparametric regression smooth
> 
> ### ** Examples
> 
> with(trawl, {
+    Zone93    <- (Year == 1 & Zone == 1)
+    Position  <- cbind(Longitude - 143, Latitude)
+    model1 <- sm.regression(Position[Zone93,], Score1[Zone93],
+         h= c(0.1, 0.1), display = "rgl", xlab="Longitude - 143")
+    model2 <- sm.regression(Position[Zone93,], Score1[Zone93],
+         h= c(0.2, 0.2), display = "none")
+    sm.surface3d(model2$eval.points, model2$est, model1$scaling, col = "red")
+ })
Error in sm.surface3d(model2$eval.points, model2$est, model1$scaling,  : 
  a scaling must be specified.
Calls: with -> with.default -> eval -> eval -> sm.surface3d
Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rms', 'ggplot2', 'flextable', 'plotROC', 'icenReg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘devtools’
Packages required but not available:
  'glmnet', 'JuliaCall', 'caret', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'bookdown', 'rmarkdown', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'SKAT', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DescTools', 'shiny', 'shinydashboard', 'sortable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggraph', 'graphlayouts', 'igraph', 'miniUI', 'ggplot2', 'shiny',
  'colourpicker', 'DT'

Package suggested but not available for checking: ‘ggforce’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'covr', 'purrrlyr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) SnakesAndLaddersGame.Rd:25: Lost braces; missing escapes or markup?
    25 | {Hector Haffenden} {haffendenh@cardiff.ac.uk}
       |                    ^
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages suggested but not available for checking:
  'rmarkdown', 'terra', 'raster', 'sf', 'units'
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                  ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                           ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                                      ^
checkRd: (-1) sk_GLS.Rd:40: Lost braces; missing escapes or markup?
    40 | Operations with V^{-1} are computed using the factorization \code{fac} (see \code{sk_var}), or
       |                   ^
checkRd: (-1) sk_LL.Rd:37: Lost braces; missing escapes or markup?
    37 | \code{quad_form} is z^T V^{-1} z, for the observed response vector z, which is constructed
       |                           ^
checkRd: (-1) sk_var.Rd:41: Lost braces; missing escapes or markup?
    41 | returns the quadratic form X^T V^{-1} X.
       |                                  ^
checkRd: (-1) sk_var.Rd:33: Lost braces; missing escapes or markup?
    33 | either matrix \code{V}, or X^T V^{-1} X, or a factorization ('chol' or 'eigen')
       |                                  ^
Packages required but not available:
  'keras', 'tensorflow', 'dplyr', 'readr', 'ggplot2', 'CORElearn',
  'dbscan', 'stringr', 'reticulate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
Package suggested but not available for checking: ‘rgl’
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'prodlim'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'shiny', 'rvest', 'dplyr', 'memoise'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat', 'shinydashboard', 'leaflet',
  'plotly', 'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'reticulate', 'RPostgres'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'adegenet', 'dplyr', 'ggplot2', 'readr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xml2', 'openxlsx', 'ggplot2', 'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'haplo.stats', 'tidyr', 'plyr', 'ggplot2', 'poisbinom'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'biomaRt', 'VariantAnnotation',
  'org.Hs.eg.db', 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BiocStyle'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'vcfR', 'ggplot2', 'Rtsne', 'adegenet', 'ggridges'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GWASTools', 'gdsfmt', 'ggplot2'

Packages suggested but not available for checking:
  'biomaRt', 'cowplot', 'dplyr', 'ggrepel', 'plyr', 'SNPRelate',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RSQLite', 'biomaRt', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'clickR', 'future', 'future.apply', 'ggplot2', 'ggrepel', 'ks'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'rgl'

Packages suggested but not available for checking: 'rmarkdown', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gaston', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'tidyr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
checkRd: (-1) plot.selm.Rd:101: Lost braces
   101 | data. Default value for code{which} is \code{2:4} if \code{p>1}, otherwise
       |                             ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'emdbook', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'EnvStats', 'cubature', 'geepack', 'rjags', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘MfUSampler’
Note: skipping ‘SNS.Rnw’ due to unavailable dependencies: 'MfUSampler'
Packages required but not available:
  'dplyr', 'readr', 'lubridate', 'tidyr', 'astrochron'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'roxygen2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following calls to attach():
File ‘SOAR/R/SOAR.R’:
  attach(NULL, pos, basename(directory))
See section ‘Good practice’ in ‘?attach’.
Found the following files/directories:
  ‘.R_Test’
Packages required but not available:
  'DoE.base', 'FrF2', 'igraph', 'lhs', 'partitions'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'np', 'minqa'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'shiny', 'FactoMineR', 'ggrepel', 'htmlTable', 'stringr',
  'reshape2', 'flextable', 'dplyr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'lubridate', 'oai', 'xml2'

Packages suggested but not available for checking:
  'ggplot2', 'reshape2', 'rmarkdown', 'roxyglobals', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'partitions'
Running examples in ‘socialranking-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: generateNextPartition
> ### Title: Next partition
> ### Aliases: generateNextPartition
> 
> ### ** Examples
> 
> coalitions <- createPowerset(c('a','b'), includeEmptySet = FALSE)
> # list(c('a','b'), 'a', 'b')
> 
> gen <- powerRelationGenerator(coalitions)
Error in powerRelationGenerator(coalitions) : 
  The package "partitions" is required.
Calls: powerRelationGenerator -> <Anonymous>
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'mice', 'stringr', 'tidycensus', 'tidyr'

Packages suggested but not available for checking:
  'geosphere', 'ggplot2', 'sf', 'testthat', 'tigris', 'units'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'fs'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) s_soda_pred.Rd:8: Lost braces; missing escapes or markup?
     8 | S-SODA assumes within each slice the X vector follow multivariate normal distribution. This function predicts the response y by reverting the P(X | slice(y)) to P(slice(y) | X), and estimates the E(y|X) as sum_{h} E(y | slice(y)=h, X) P (slice(y)=h | X)
       |                                                                                                                                                                                                                   ^
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘crul’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'ggplot2', 'shinyjs', 'ggExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'glmnet', 'scales', 'caret', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'e1071', 'googledrive', 'Hmisc', 'raster', 'sf', 'terra'

Packages suggested but not available for checking:
  'arm', 'Cubist', 'aqp', 'kernlab', 'ranger', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘aqp’

Packages suggested but not available for checking:
  'xml2', 'rvest', 'odbc', 'RSQLite', 'sf', 'wk', 'terra', 'raster',
  'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nloptr', 'Rmpfr', 'SoilHyP'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'rhandsontable', 'shinydashboard', 'fields'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

Packages suggested but not available for checking: 'FME', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'soilDB', 'ape', 'data.tree'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'ggpp', 'modelr', 'AICcmodavg'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘raster’
'LazyData' is specified without a 'data' directory
Package required but not available: ‘latticeExtra’

Packages suggested but not available for checking:
  'raster', 'rasterVis', 'tdr', 'meteoForecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ranger', 'igraph', 'future.apply'

Packages suggested but not available for checking:
  'tidyverse', 'uwot', 'rsample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'plyr', 'crul', 'xml2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'shiny', 'shinyjs'
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.solveEnv’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
checkRd: (-1) solve_pH_from_AT.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:93: Lost braces in \itemize; meant \describe ?
Packages required but not available: 'dplyr', 'readxl', 'tidyr', 'usethis'

Packages suggested but not available for checking:
  'ggplot2', 'recipes', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘covr’
Packages required but not available:
  'igraph', 'shiny', 'ggplot2', 'ggwordcloud', 'metR', 'interp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'shinycssloaders', 'shinyBS', 'shinyjs',
  'shinyjqui'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'kohonen', 'shiny', 'dplyr', 'plyr', 'openair', 'colourpicker',
  'shinycssloaders', 'shinycustomloader'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'plyr', 'RSpectra', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kohonen', 'som'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/som.Rcheck/00install.out’ for details.
Packages required but not available: 'ggplot2', 'kohonen', 'reshape2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geosphere’

Packages suggested but not available for checking:
  'reshape2', 'Hmisc', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'suncalc'

Packages suggested but not available for checking:
  'av', 'testthat', 'covr', 'devtools', 'googleCloudStorageR',
  'googleLanguageR', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘SpATS’
Running examples in ‘SOP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rae
> ### Title: Defining random effects in SOP formula
> ### Aliases: rae
> ### Keywords: models smooth regression
> 
> ### ** Examples
> 
> library(SOP)
> require(SpATS)
Loading required package: SpATS
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘SpATS’
> ## An example of use of SOP package for the analysis of field trials experiments.
> ## Taken from the SpATS package.
> data(wheatdata)
Warning in data(wheatdata) : data set ‘wheatdata’ not found
> 
> # Create factor variable for row and columns
> wheatdata$R <- as.factor(wheatdata$row)
Error: object 'wheatdata' not found
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'htmltools', 'htmlwidgets', 'learnr', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spelling', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dlstats', 'dplyr', 'ggplot2', 'tidyr', 'rvest', 'xml2', 'lubridate',
  'sf'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) findFn.Rd:101-102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:103-109: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:110-116: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:117-120: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:121-124: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:125: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:126-130: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:131-133: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:134-137: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:144-150: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:151-157: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:158-161: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) findFn.Rd:162: Lost braces in \itemize; \value handles \item{}{} directly
Packages suggested but not available for checking:
  'devtools', 'ggplot2', 'testthat', 'roxygen2', 'kableExtra',
  'rmarkdown', 'covr', 'ggrepel'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'shinyBS', 'htmltools', 'dplyr', 'dbplyr', 'RSQLite', 'shinyFiles',
  'shiny', 'keras', 'shinyjs'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'shiny', 'shinyjqui'
Documented arguments not in \usage in Rd file 'path2name.Rd':
  ‘x’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘oce’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'SciencesPo', 'stringr'

Package which this enhances but not available for checking: ‘RecordLinkage’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'shinyBS', 'shiny', 'shinyjs', 'nonlinearTseries'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geomorph', 'reshape2', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Seurat'

Packages suggested but not available for checking:
  'rstan', 'DropletUtils', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sourcetools.Rcheck/00install.out’ for details.
Packages required but not available:
  'broom', 'dplyr', 'future', 'furrr', 'ggplot2', 'lubridate',
  'stringr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'NAM', 'lme4', 'reshape2', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘spelling’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'xml2', 'DT', 'urltools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'RANN', 'lme4'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'crsuggest', 'dplyr', 'ggraph', 'ggplot2', 'igraph', 'sf',
  'spatstat.random', 'spatstat.geom', 'ggthemes'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RcppTN', 'Rfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rgl', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'JADE', 'RcppArmadillo'

Packages suggested but not available for checking:
  'sftime', 'sf', 'spacetime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘intervals’

Packages suggested but not available for checking:
  'adehabitatLT', 'cshapes', 'gstat', 'plm', 'raster', 'rmarkdown',
  'sf', 'sftime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

Packages suggested but not available for checking:
  'dplyr', 'quanteda', 'R.rsp', 'rmarkdown', 'spelling', 'testthat',
  'tidytext'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'quickPlot', 'reproducible', 'fs', 'igraph', 'lobstr', 'qs', 'terra'

Packages suggested but not available for checking:
  'archive', 'covr', 'DiagrammeR', 'future', 'future.callr', 'ggplot2',
  'ggplotify', 'NLMR', 'pkgload', 'raster', 'rmarkdown', 'roxygen2',
  'RSQLite', 'SpaDES.tools', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'reproducible', 'terra'

Packages suggested but not available for checking:
  'animation', 'covr', 'dqrng', 'NLMR', 'quickPlot', 'raster',
  'rmarkdown', 'sf', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'earlywarnings', 'np', 'pomp', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running examples in ‘spaero-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create_simulator
> ### Title: Create surveillance data simulator.
> ### Aliases: create_simulator
> 
> ### ** Examples
> 
> 
> foo <- create_simulator()
Error: The pomp package is needed for this function to work. Please install it.
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘spam’
Running examples in ‘spam64-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spam64-package
> ### Title: 64-bit extension for the SPArse Matrix Package spam
> ### Aliases: spam64-package spam64 SPAM64 Spam64
> ### Keywords: documentation package
> 
> ### ** Examples
> 
> library("spam")
Error in library("spam") : there is no package called ‘spam’
Execution halted
Packages required but not available:
  'Rcpp', 'nloptr', 'minqa', 'gmp', 'geometry', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'future', 'future.apply', 'Infusion', 'IsoriX',
  'blackbox', 'RSpectra', 'ROI.plugin.glpk', 'lme4'

Packages which this enhances but not available for checking:
  'RLRsim', 'lmerTest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'fields', 'testthat', 'R.rsp', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

Packages suggested but not available for checking: 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plyr', 'stringr', 'ptw', 'mmand', 'RNifti', 'RNiftyReg', 'fields',
  'nloptr'

Packages suggested but not available for checking:
  'shiny', 'ggplot2', 'miniUI', 'rmarkdown', 'testthat', 'ragg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sparklyr', 'dplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

Package suggested but not available for checking: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'sparklyr', 'sparklyr.nested'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'htmlwidgets'

Packages suggested but not available for checking:
  'formattable', 'rmarkdown', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dbplyr', 'dplyr', 'sparklyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sparklyr', 'listviewer', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'reactR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dbplyr', 'dplyr', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'arrow', 'broom', 'ggplot2', 'Lahman', 'r2d3', 'reshape2', 'shiny',
  'parsnip', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sparklyr', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

Packages suggested but not available for checking: 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cvAUC', 'ranger'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'doFuture', 'doRNG', 'fields', 'future', 'sparr', 'spatstat.geom',
  'spatstat.random', 'terra'

Packages suggested but not available for checking:
  'geojsonsf', 'ggmap', 'ggplot2', 'sf', 'spelling', 'testthat',
  'tidyterra', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat', 'spatstat.geom', 'spatstat.explore', 'spatstat.random'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggrepel', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'igraph', 'RCy3', 'testthat'
Package unavailable to check Rd xrefs: ‘RCy3’
Unknown package ‘sparsebn’ in Rd xrefs
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'covr', 'modeldata', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘refund’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'RSpectra', 'tidyr'

Packages suggested but not available for checking:
  'dplyr', 'glmnet', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'scales', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'bookdown', 'prettydoc', 'rmarkdown', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'R.rsp'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'Rcpp', 'spam'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RSpectra’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'robustHD', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘doRNG’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'future.apply', 'future', 'tidyverse', 'lubridate',
  'viridis', 'geosphere'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) lsq.Rd:12-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:14-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:19-20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:21-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lsq.Rd:26-27: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'dplyr', 'tidyr', 'ggplot2', 'bookdown', 'kableExtra', 'testthat',
  'scales', 'trustOptim'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘Rcpp’
Packages required but not available:
  'ggplot2', 'Rcpp', 'MCMCpack', 'glmnet', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'recipes'

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra', 'testthat', 'covr', 'modeldata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) elasticNetSEMcv.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) elasticNetSEMcv.Rd:71-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) elasticNetSEMcv.Rd:75-82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) elasticNetSEMcv.Rd:83-92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) elasticNetSEMcv.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) elasticNetSEMcv.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘huge’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'ggplot2', 'reshape2', 'picasso'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'selectiveInference', 'glmnet', 'RcppArmadillo',
  'RcppEnsmallen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FactoMineR', 'dplyr', 'tidyr', 'ggplot2', 'plotly', 'stringr',
  'shiny', 'shinydashboard', 'shinyjs', 'shinyjqui', 'fpc', 'ggdendro',
  'htmltools', 'htmlwidgets', 'shinythemes', 'explor', 'shinyWidgets',
  'scatterD3', 'ks', 'leaflet', 'ape', 'mapview', 'ade4',
  'shinycssloaders', 'scales', 'fastcluster'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'reshape2', 'TMB', 'RcppEigen'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'geepack'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat', 'spatstat.geom', 'spatstat.random'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'scales', 'sf', 'dplyr', 'lwgeom', 'cowplot'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'sf', 'qpdf'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'Rtsne', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'JADE', 'SpatialNP', 'distances', 'RcppArmadillo'

Packages suggested but not available for checking:
  'sf', 'rmarkdown', 'gstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'grr', 'SpatialExperiment', 'zinbwave', 'dplyr', 'reshape2',
  'reticulate', 'keras', 'tensorflow', 'FNN', 'ggplot2', 'ggpubr',
  'scran', 'scuttle'

Packages suggested but not available for checking:
  'rmarkdown', 'BiocParallel', 'rhdf5', 'DelayedMatrixStats',
  'HDF5Array', 'testthat', 'ComplexHeatmap', 'bluster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'terra'

Packages suggested but not available for checking:
  'spatstat.geom', 'spatstat.explore', 'spdep', 'ks', 'readr', 'RANN',
  'rms', 'yaImpute', 'caret', 'dplyr', 'gstat', 'units', 'stringr',
  'lwgeom', 'geodata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'spdep', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'rgl', 'geometry', 'rmarkdown'

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘TMB’

Packages suggested but not available for checking:
  'INLA', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'comat', 'Rcpp', 'terra'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'optimization', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'dplyr', 'raster'

Packages suggested but not available for checking:
  'tmap', 'rmarkdown', 'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ranger', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ICSNP', 'MNM'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SpatialNP.Rcheck/00install.out’ for details.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘qpdf’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'isoband', 'raster'

Packages suggested but not available for checking:
  'lwgeom', 'cartography', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'sf', 'ggplot2', 'rdrobust', 'cowplot', 'broom'

Packages suggested but not available for checking:
  'tmap', 'rmarkdown', 'testthat', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spdep', 'GWmodel', 'plm', 'spatialreg'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'spdep'

Packages suggested but not available for checking:
  'RSpectra', 'tmap', 'spam', 'rmarkdown', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ranger', 'tidyr', 'huxtable', 'patchwork',
  'viridis'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'classInt', 'colourvalues', 'dplyr', 'fs', 'GenSA', 'ggplot2',
  'leafem', 'leafgl', 'leaflet', 'lubridate', 'Rcpp', 'sf', 'tmap',
  'units', 'viridis'

Packages suggested but not available for checking:
  'automap', 'gstat', 'rmarkdown', 'testthat', 'vroom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'rsample', 'sf', 'units'

Packages suggested but not available for checking:
  'covr', 'lwgeom', 'modeldata', 'rmarkdown', 'testthat', 'tidyr',
  'vdiffr', 'yardstick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'scales', 'spatstat.geom',
  'spatstat.explore', 'furrr', 'future', 'dixon', 'stringr'

Packages suggested but not available for checking:
  'devtools', 'rmarkdown', 'testthat', 'pheatmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spBayes', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat', 'fields', 'spatstat.geom', 'spatstat.linnet',
  'spatstat.model', 'fastcluster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'future', 'Rcpp', 'ggplot2', 'plyr', 'future.apply', 'RcppArmadillo'

Packages suggested but not available for checking:
  'reshape2', 'testthat', 'covr', 'gstat', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'colourvalues', 'geojsonsf', 'geometries', 'interleave',
  'jsonify', 'sfheaders'

Packages suggested but not available for checking:
  'colourvalues', 'covr', 'geojsonsf', 'jsonify', 'sfheaders',
  'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'ggplot2', 'scales', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'spTimer', 'fields', 'covr', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RANN', 'sf', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'SeuratObject'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr', 'tidyr', 'fields', 'scico', 'covr',
  'styler', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'pomp', 'dplyr', 'tidyr', 'stringr', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'doRNG'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'adehabitatHR', 'igraph', 'sf', 'units'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'spam'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat.linnet'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'spatstat.geom', 'spatstat.random'

Packages suggested but not available for checking:
  'spatstat.linnet', 'spatstat.model', 'spatstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘polyclip’

Packages suggested but not available for checking:
  'spatstat.random', 'spatstat.explore', 'spatstat.model',
  'spatstat.linnet', 'spatstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat.linnet', 'spatstat'

Depends: includes the non-default packages:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat.linnet', 'spatstat.data', 'spatstat',
  'rpanel', 'tcltk'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat.linnet', 'spatstat'

Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom',
  'spatstat.random', 'spatstat.explore', 'spatstat.model',
  'spatstat.linnet', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model'

Package suggested but not available for checking: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat'

Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom',
  'spatstat.random', 'spatstat.explore', 'spatstat.model', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore'

Packages suggested but not available for checking:
  'glmnet', 'spatstat.linnet', 'spatstat'

Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.geom', 'spatstat.random',
  'spatstat.explore', 'nlme', 'rpart'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatstat.geom’

Packages suggested but not available for checking:
  'spatstat.linnet', 'spatstat.explore', 'spatstat.model', 'spatstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat.linnet'

Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.geom', 'spatstat.random',
  'spatstat.explore', 'spatstat.model', 'spatstat.linnet'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘spatstat.model’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'spatstat.explore', 'spatstat.geom', 'spatstat.random', 'raster',
  'fields', 'stringr', 'sf', 'lubridate'

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'raster', 'sf', 'rmarkdown', 'covr', 'trip',
  'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘MBA’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spBayes.Rcheck/00install.out’ for details.
Packages required but not available: 'Rcpp', 'fields', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pgdraw', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'classInt', 'rmarkdown', 'womblR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'lme4', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'sf', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'classInt', 'rmarkdown', 'womblR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) dphat.Rd:25: Lost braces
    25 | These results were heavily used in Krumbholz/Z\"{o}ller (1995) for Shewhart and in Knoth/Steinmetz (2013) for EWMA control charts.
       |                                                 ^
checkRd: (-1) dphat.Rd:38: Lost braces
    38 | W. Krumbholz and A. Z\"{o}ller (1995),
       |                        ^
checkRd: (-1) dphat.Rd:39: Lost braces
    39 | \code{p}-Karten vom Shewhartschen Typ f\"{u}r die messende Pr\"{u}fung,
       |                                          ^
checkRd: (-1) dphat.Rd:39: Lost braces
    39 | \code{p}-Karten vom Shewhartschen Typ f\"{u}r die messende Pr\"{u}fung,
       |                                                                ^
checkRd: (-1) xshewhartrunsrules.arl.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) xshewhartrunsrules.arl.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) xshewhartrunsrules.arl.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) xshewhartrunsrules.arl.Rd:43-44: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'sf', 'spDataLarge', 'spdep', 'spatialreg'
Packages required but not available:
  'rcarbon', 'dplyr', 'ggplot2', 'raster', 'gstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'units', 's2', 'e1071'

Packages suggested but not available for checking:
  'spatialreg', 'dbscan', 'igraph', 'RSpectra', 'classInt', 'tmap',
  'spam', 'ggplot2', 'rmarkdown', 'rgeoda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'future', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RcppSpdlog’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'forecast', 'plyr', 'Rcpp', 'separationplot', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'devtools', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'animation'

Packages suggested but not available for checking:
  'roxygen2', 'igraph', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'quarto', 'readr', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rfast', 'ggplot2', 'reshape2', 'rvest', 'xml2', 'missForest'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'tidyr', 'dplyr', 'stringr', 'fixest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'imager', 'tidyverse', 'rgl', 'mrbsizeR', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Ckmeans.1d.dp', 'Seurat'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'SeuratObject', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘csv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'cowplot', 'dplyr', 'furrr', 'future', 'ggplot2', 'ggraph',
  'igraph', 'lme4', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'broom.mixed', 'ggridges', 'testthat', 'tidyverse', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'reshape2', 'stringr', 'epiR'

Packages suggested but not available for checking:
  'caret', 'rmarkdown', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geojsonsf', 'sf'

Packages suggested but not available for checking:
  'calendar', 'calendR', 'httptest', 'lubridate', 'lutz', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'NMF', 'plotly', 'plyr', 'dplyr', 'viridis', 'hNMF'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RSpectra', 'ggplot2', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) image.plot.Rd:78: Escaped LaTeX specials: \$
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'CVXR', 'bookdown', 'prettydoc', 'rmarkdown', 'R.rsp', 'testthat',
  'patrick', 'igraph', 'kernlab', 'clusterSim', 'viridis'

VignetteBuilder packages required for checking but not installed:
  'CVXR', 'rmarkdown', 'R.rsp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'rgee', 'geojsonio', 'sf', 'dplyr', 'ggplot2', 'reshape2', 'tidyr'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'chromote', 'cowplot', 'dplyr', 'gghighlight', 'ggplot2', 'ggrepel',
  'ggridges', 'ggtext', 'gt', 'htmltools', 'openxlsx', 'pagedown',
  'patchwork', 'readr', 'scales', 'shiny', 'shinyalert',
  'shinydashboard', 'shinyFeedback', 'shinyjs', 'shinyWidgets',
  'spsComps', 'stringr', 'tidyr', 'waiter', 'webshot2'

Packages suggested but not available for checking:
  'cooltools', 'magick', 'pkgload', 'readxl', 'rhub', 'rmarkdown',
  'rsconnect'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp', 'testthat'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinyjs'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lomb’

Packages suggested but not available for checking:
  'qs', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ClusterR', 'Rfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘raster’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'abjutils', 'dplyr', 'janitor', 'lubridate', 'stringr', 'tidyr',
  'xml2', 'rvest', 'httptest'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'tm', 'tidyr', 'pdftools', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking: 'labelled', 'readroper'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'phyloseq', 'Rcpp', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lmomco', 'TLMoments', 'reshape', 'ggplot2', 'lubridate'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'hunspell'

Package suggested but not available for checking: ‘pdftools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spdep', 'MBA'

Package suggested but not available for checking: ‘gstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'future', 'future.apply', 'ROCR', 'stringr'

Packages suggested but not available for checking:
  'ranger', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'rmarkdown', 'AER'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Errors in running code in vignettes:
when running code in ‘SpeTestNP.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘SpeTestNP.Rmd’ using ‘UTF-8’... failed to complete the test
Packages required but not available: 'quadmesh', 'raster'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘refund’
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘RSpectra’

Packages suggested but not available for checking:
  'covr', 'sf', 'spdep', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mlr3', 'future', 'mlr3pipelines', 'mlr3learners', 'ranger',
  'ggplot2'

Package suggested but not available for checking: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'spdep', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package which this enhances but not available for checking: ‘seqinr’
checkRd: (-1) cylinder.counts.Rd:61-62: Lost braces
    61 | nucleotide, so that \code{a.c} represents the set {\code{aac}, \code{acc}, 
       |                                                   ^
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'spdep', 'sf', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Packages required but not available: 'geosphere', 'rgl', 'sphereplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'rgl', 'RcppCGAL', 'RcppEigen'

Packages suggested but not available for checking: 'cooltools', 'uniformly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cubature', 'mvmesh'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spatialreg', 'spdep', 'stringr', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'doFuture', 'doRNG', 'future', 'rotasym', 'RcppArmadillo'

Packages suggested but not available for checking:
  'CompQuadForm', 'progressr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'tidyr', 'genlasso'

Package suggested but not available for checking: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'covr', 'robotstxt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'pegas'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rgbif', 'rworldmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'interp', 'MCMCpack', 'reshape', 'scales'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘emdbook’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geepack', 'stringr', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tourr', 'ggplot2', 'gganimate', 'plotly', 'shiny', 'Rdimtools'

Packages suggested but not available for checking:
  'htmlwidgets', 'dplyr', 'GGally', 'rmarkdown', 'testthat', 'covr',
  'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'torch', 'igraph', 'ggplot2', 'ggthemes', 'readr', 'lubridate',
  'fastDummies'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GetoptLong', 'lubridate'

Packages suggested but not available for checking:
  'ComplexHeatmap', 'rmarkdown', 'ape', 'cowplot', 'dendextend',
  'magick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'pkgdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'xml2', 'readxl', 'cowplot', 'digest'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'rmarkdown', 'ggborderline'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'maxLik', 'sphet', 'car', 'spatialreg'

Package suggested but not available for checking: ‘spdep’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘SynthETIC’

Packages suggested but not available for checking: 'rmarkdown', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mosaic', 'ggplot2'

Packages suggested but not available for checking:
  'R.rsp', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) wood_inv_solve.Rd:7: Lost braces; missing escapes or markup?
     7 | using the Woodbury formula. The function \code{mmqn_step} invokes \code{wood_inv_solve} instead of {ddg} if the argument
       |                                                                                                    ^
checkRd: (-1) wood_inv_solve.Rd:26: Lost braces; missing escapes or markup?
    26 | using the Woodbury formula. The function \code{mmqn_step} invokes \code{wood_inv_solve} instead of {ddg} if the argument
       |                                                                                                    ^
Invalid package aliases in Rd file 'split_feasibility.Rd':
  ‘split_feasibility-package’
Package required but not available: ‘lbfgs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'mvnfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tidyr', 'dplyr', 'Rcpp', 'ggplot2', 'plyr', 'patchwork', 'lme4'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'latex2exp', 'RSpectra', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'multicool', 'glmnet'

Packages suggested but not available for checking: 'testthat', 'mvnfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) softening.optimized.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) softening.optimized.Rd:44: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'miscTools', 'penalized', 'ggplot2', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plm', 'maxLik', 'spam', 'spatialreg', 'spdep', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Found the following significant warnings:
  Warning: 'is.R' is deprecated.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/splus2R.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 17.0.6 (5)’
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spm', 'gstat', 'gbm', 'fields', 'glmnet', 'e1071'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'testthat', 'covr', 'antaresViz'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'ranger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'fields', 'ggplot2', 'spdep', 'rARPACK', 'FNN'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gstat', 'gbm', 'biomod2', 'ranger'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'sf', 'spdep', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spdep', 'igraph', 'cubature', 'future.apply', 'ggplot2',
  'progressr', 'Rcpp', 'dbscan', 'sf', 'dplyr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'future', 'testthat', 'kableExtra', 'classInt', 'reshape2', 'rgl',
  'tmap', 'smoothr', 'concaveman', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘NMF’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RANN’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rgbif', 'rebird', 'rvertnet', 'ridigbio', 'lubridate', 'crul', 'wk',
  's2'

Packages suggested but not available for checking:
  'testthat', 'taxize', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RANN', 'lme4'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'ggplot2'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Note that you would never run this file directly. This is used by tools::testInstallPackages()
  > # and other packages like covr.
  > # To actually run the tests, you need to set the working directory then run
  > # devtools::test()
  > 
  > # This line ensures that R CMD check can run tests.
  > # See https://github.com/hadley/testthat/issues/144
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(spongebob)
  > 
  > testthat::test_check('spongebob')
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available: 'ggplot2', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'readr', 'lubridate', 'imputeTS', 'scales', 'greybox',
  'philentropy', 'fastDummies'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2'

Packages suggested but not available for checking:
  'dplyr', 'lobstr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CausalImpact', 'keras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggfittext', 'ggplot2'

Packages suggested but not available for checking:
  'gganimate', 'testthat', 'roxygen2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'readr', 'rvest', 'stringr', 'janitor', 'xml2'

Packages suggested but not available for checking:
  'ggridges', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'GGally', 'keras', 'mlr', 'plotly', 'reticulate',
  'rsample', 'sensitivity', 'smoof', 'SPOT', 'tensorflow', 'tfdatasets'

Packages suggested but not available for checking:
  'farff', 'rmarkdown', 'testthat', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'patchwork', 'ggrepel', 'ggExtra', 'ggbeeswarm', 'ggplot2'

Packages suggested but not available for checking:
  'sf', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'glmnet', 'laGP', 'nloptr', 'plgp', 'plotly', 'ranger',
  'rgenoud'

Packages suggested but not available for checking:
  'batchtools', 'car', 'farff', 'rmarkdown', 'OpenML', 'readr',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'BalancedSampling', 'WaveSampling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘qpdf’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'ggplot2', 'gt', 'rgeoda', 'igraph', 'rsample',
  'spatialreg', 'spdep', 'sf', 'tidyr', 'lwgeom'

Packages suggested but not available for checking: 'rmarkdown', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'partitions', 'disordR'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'gstat', 'rmarkdown', 'sf', 'terra', 'raster'
Packages required but not available: 'Rcpp', 'igraph', 'ggplot2'

Packages suggested but not available for checking:
  'dplyr', 'fs', 'gganimate', 'ggraph', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘interp’

Packages suggested but not available for checking: 'fields', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘swfscMisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘devtools’

Packages suggested but not available for checking:
  'tidytext', 'dplyr', 'lubridate', 'readr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'MBESS', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'testthis', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'stringr', 'shinytoastr', 'shinyAce', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'shinyjqui', 'spsUtil'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lhs', 'FME'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'glmnet'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'minqa', 'spatialreg', 'spdep', 'sphet'

Packages suggested but not available for checking: 'dplyr', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'survey', 'lme4', 'units'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'devtools', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spTimer', 'spacetime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spam', 'fields'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spacetime', 'extraDistr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'viridis'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'prettydoc', 'gstat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gstat', 'raster'

Packages suggested but not available for checking:
  'dplyr', 'GGally', 'readr', 'testthat', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) vol.m3.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vol.m3.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vol.m3.Rd:23: Lost braces in \itemize; meant \describe ?
Packages required but not available:
  'readxl', 'dplyr', 'olsrr', 'FactoMineR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘RSQLite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'pool', 'tidyr', 'sf'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'testthat', 'odbc', 'RSQLite', 'RPostgres',
  'RMariaDB', 'bigrquery'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'odbc', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'RSQLite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RSQLite', 'dplyr', 'dbplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘readr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'duckdb', 'arrow', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'shiny', 'shinydashboard'
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > if (SqlRender::supportsJava8()) {
  +   library(testthat)
  +   test_check("SqlRender")
  + }
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dbplyr’

Packages suggested but not available for checking:
  'testthat', 'arm', 'glmnet', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'readr', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reshape2', 'ggplot2', 'pathview'

Package suggested but not available for checking: ‘DESeq2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) fpiter.Rd:55-58: Lost braces
    55 |     \code{tol}{ - a small, positive scalar that determines when iterations 
       |               ^
checkRd: (-1) fpiter.Rd:60-61: Lost braces
    60 |     \code{maxiter}{ - an integer denoting the maximum limit on the number of 
       |                   ^
checkRd: (-1) fpiter.Rd:63-65: Lost braces
    63 |     \code{trace}{ - a logical variable denoting whether some of the intermediate 
       |                 ^
checkRd: (-1) fpiter.Rd:67-70: Lost braces
    67 |     \code{intermed}}{ - a logical variable denoting whether the intermediate 
       |                     ^
checkRd: (-1) squarem.Rd:134: Lost braces
   134 |       along with the corresponding log-likelihood value.  When the code{objfn} is not specified it will return the fixed-point residual instead of the objective function values. 
       |                                                                        ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dbscan', 'fdacluster', 'funData', 'furrr', 'ggplot2', 'ggrepel',
  'MFPCA', 'progressr', 'Rcpp', 'roahd', 'scales', 'tidyr',
  'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'covr', 'future', 'gganimate', 'gghighlight', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggcorrplot', 'ggeasy', 'gghighlight', 'ggplot2', 'ggpubr',
  'googlesheets4', 'plotly', 'readxl', 'rstatix', 'shiny',
  'shinydashboard'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'multiridge'

Packages suggested but not available for checking: 'ggplot2', 'ecpc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyMatrix', 'ggplot2', 'plotly', 'lme4', 'arm', 'brms'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Documented arguments not in \usage in Rd file 'sraAutoregTimeseries.Rd':
  ‘logs2’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'RSQLite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
checkRd: (-1) plot.SRCS.Rd:48-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:56-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:59-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:61-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:63-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:74-75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:77-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:87-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:143-144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:145: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:146-148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:149: Lost braces in \itemize; meant \describe ?
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
'LazyData' is specified without a 'data' directory
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TeachingSampling', 'dplyr', 'caret'

Package suggested but not available for checking: ‘survey’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cellWise', 'glmnet'

Packages suggested but not available for checking: 'testthat', 'mvnfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'RcppRoll', 'yardstick'

Packages suggested but not available for checking:
  'covr', 'kableExtra', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package which this enhances but not available for checking: ‘TripleR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DESeq2', 'ggplot2', 'ggsci', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'RANN', 'vdiffr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'DT', 'shinycssloaders', 'shinybusy'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'concaveman', 'sf', 'spatstat.geom', 'Morpho', 'plotly', 'shiny',
  'viridis', 'shinydashboard', 'dashboardthemes', 'shinyBS', 'ggplot2',
  'ggpubr', 'spatstat.random', 'FNN', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'BiocStyle', 'RefManageR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'survey', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'convey', 'dbplyr', 'ggplot2', 'rmarkdown', 'pander',
  'RSQLite', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'r4ss', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tsBSS', 'ICtest', 'JADE', 'BSSprep', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pcaPP’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'caret', 'e1071', 'C50', 'kernlab', 'testthat', 'stringi', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Running examples in ‘ssc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: coBC
> ### Title: CoBC method
> ### Aliases: coBC
> 
> ### ** Examples
> 
> 
> library(ssc)
> 
> ## Load Wine data set
> data(wine)
> 
> cls <- which(colnames(wine) == "Wine")
> x <- wine[, -cls] # instances without classes
> y <- wine[, cls] # the classes
> x <- scale(x) # scale the attributes
> 
> ## Prepare data
> set.seed(20)
> # Use 50% of instances for training
> tra.idx <- sample(x = length(y), size = ceiling(length(y) * 0.5))
> xtrain <- x[tra.idx,] # training instances
> ytrain <- y[tra.idx]  # classes of training instances
> # Use 70% of train instances as unlabeled set
> tra.na.idx <- sample(x = length(tra.idx), size = ceiling(length(tra.idx) * 0.7))
> ytrain[tra.na.idx] <- NA # remove class information of unlabeled instances
> 
> # Use the other 50% of instances for inductive testing
> tst.idx <- setdiff(1:length(y), tra.idx)
> xitest <- x[tst.idx,] # testing instances
> yitest <- y[tst.idx] # classes of testing instances
> 
> ## Example: Training from a set of instances with 1-NN as base classifier.
> set.seed(1)
> m1 <- coBC(x = xtrain, y = ytrain, 
+            learner = caret::knn3, 
+            learner.pars = list(k = 1),
+            pred = "predict")
Error in loadNamespace(x) : there is no package called ‘caret’
Calls: coBC ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘SingleCaseES’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'raster', 'gbm', 'dismo', 'e1071', 'ggplot2', 'reshape2',
  'scales', 'shiny', 'shinydashboard', 'spThin', 'leaflet', 'sdm'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'shinyFiles'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'doFuture', 'furrr', 'ggplot2', 'plyr', 'Rcpp', 'scales', 'ssddata',
  'stringr', 'TMB', 'RcppEigen'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'future', 'R.rsp', 'readr', 'reshape2', 'rmarkdown',
  'testthat', 'tidyr'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘MESS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Invalid NAMESPACE file, parsing gives:
Error in packageVersion("spdep"): there is no package called ‘spdep’

See section ‘Package namespaces’ in the ‘Writing R Extensions’ manual.
Package required but not available: ‘survey’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘BDgraph’

Packages suggested but not available for checking: 'skimr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'BIGDAWG', 'DescTools', 'dplyr', 'filesstrings'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'httptest', 'httpuv', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'
Running ‘engine.R’ [0s/1s]
  Comparing ‘engine.Rout’ to ‘engine.Rout.save’ ...4d3
< Linking to libssh v0.10.6
  Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = FALSE)
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'igraph', 'netmeta', 'plyr', 'R2jags', 'RevEcoR'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'scales', 'dplyr', 'terra', 'ggplot2', 'sf'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tidyr', 'dplyr', 'stringr', 'airportr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'edgeR', 'qvalue'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'parsnip', 'plyr', 'dplyr', 'RANN', 'RSSL', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'caret', 'tidymodels', 'e1071', 'C50', 'kernlab', 'testthat',
  'tidyverse', 'factoextra', 'covr', 'kknn', 'ranger', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘miscTools’

Packages suggested but not available for checking:
  'testthat', 'maxLik', 'sampleSelection', 'kableExtra', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'ggplot2', 'cowplot', 'RcppParallel',
  'RcppEigen', 'StanHeaders'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'scales', 'car', 'dbscan', 'dplyr', 'ggplot2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) new.distance.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:30-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:38-40: Lost braces in \itemize; meant \describe ?
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘sampleSelection’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'spmodel', 'RSQLite'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'dplyr', 'rstan', 'sf', 'SSN2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2', 'gganimate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RDS’

Packages suggested but not available for checking:
  'testthat', 'densEstBayes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'scanstatistics'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'e1071'

Packages suggested but not available for checking: 'rmarkdown', 'tgp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'dplyr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'BoomSpikeSlab', 'ggplot2'

Packages suggested but not available for checking:
  'AER', 'bslib', 'reactable', 'readxl', 'rmarkdown', 'scales',
  'shiny', 'shinyjs', 'shinyWidgets', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'glmnet', 'dplyr', 'bigstep', 'rsample', 'tidyr', 'stringr',
  'ggplot2', 'broom', 'caret', 'Hmisc', 'expss', 'lme4', 'recipes',
  'lmerTest'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggfortify', 'lme4', 'reshape2', 'scales',
  'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'ggplot2', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘Rmpfr’
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mcmcse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'ranger'

Packages suggested but not available for checking:
  'evtree', 'rchallenge', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggm', 'sem'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'cowplot', 'ggdendro', 'ggplot2', 'igraph', 'rmarkdown', 'testthat'
Running examples in ‘stabm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotFeatures
> ### Title: Plot Selected Features
> ### Aliases: plotFeatures
> 
> ### ** Examples
> 
> feats = list(1:3, 1:4, 1:5)
> mat = 0.92 ^ abs(outer(1:10, 1:10, "-"))
> plotFeatures(features = feats)
Loading required namespace: ggplot2
Failed with error:  ‘there is no package called ‘ggplot2’’
Loading required namespace: cowplot
Failed with error:  ‘there is no package called ‘cowplot’’
Loading required namespace: ggdendro
Failed with error:  ‘there is no package called ‘ggdendro’’
Error in loadNamespace(x) : there is no package called ‘ggplot2’
Calls: plotFeatures ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'glmnet', 'hdi', 'testthat', 'rmarkdown'
checkRd: (-1) stabsel_parameters.Rd:42: Lost braces
    42 |     always use code{"none"}.}
       |                    ^
checkRd: (-1) stabsel_stabsel.Rd:25: Lost braces
    25 |     always use code{"none"}.}
       |                    ^
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'mice', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'butcher', 'dplyr', 'ggplot2', 'glmnet', 'parsnip', 'recipes',
  'rsample', 'tidyr', 'tune', 'workflows', 'yardstick'

Packages suggested but not available for checking:
  'covr', 'kernlab', 'kknn', 'modeldata', 'ranger', 'rmarkdown',
  'SuperLearner', 'testthat', 'workflowsets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stacomirtools', 'intervals', 'stringr', 'RPostgres', 'ggplot2',
  'reshape2', 'Hmisc', 'lubridate', 'dplyr', 'pool', 'scales'

Packages suggested but not available for checking:
  'testthat', 'viridis', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pool', 'RPostgres'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'igraph'
Documented arguments not in \usage in Rd file 'which_class.Rd':
  ‘character’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'dplyr', 'reshape2', 'Rcpp', 'tidyr', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pegas', 'adegenet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'spdep', 'dplyr', 'lwgeom', 'geosphere'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dbarts', 'RcppParallel', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'lme4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'stringr'

Packages suggested but not available for checking:
  'afex', 'lmerTest', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'testthat', 'vdiffr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘fst’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'RcppParallel', 'RcppEigen'

Packages suggested but not available for checking:
  'Rcpp', 'rmarkdown', 'rstan'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RcppParallel', 'Rcpp', 'rstan', 'rstantools', 'tidyverse', 'dplyr',
  'bridgesampling', 'latex2exp', 'tidyr', 'ggplot2', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking: 'rmarkdown', 'shinystan'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RNifti’

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'fs', 'pdftools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'geoTS', 'trend', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'eemR', 'dplyr', 'tidyr', 'stringr', 'GGally', 'drc',
  'MBA', 'cdom', 'readr'

Packages suggested but not available for checking:
  'plotly', 'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'qvalue', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages which this enhances but not available for checking:
  'AER', 'censReg', 'dynlm', 'erer', 'ergm', 'lme4', 'mlogit', 'plm',
  'rms', 'sampleSelection', 'spdep', 'survey'
checkRd: (-1) stargazer.Rd:229: Lost braces
   229 |   \item{report}{a character string containing only elements of {\code{"v"}, \code{"c"}, \code{"s"},\code{"t"}, \code{"p"}, \code{"*"}} that determines whether, and in which order, variable names (\code{"v"}), coefficients (\code{"c"}), standard errors/confidence intervals (\code{"s"}), test statistics (\code{"t"}) and p-values (\code{"p"}) should be reported in regression tables. If one of the aforementioned letters is followed by an asterisk (\code{"*"}), significance stars will be reported next to the corresponding statistic.}
       |                                                                ^
checkRd: (-1) stargazer.Rd:246: Lost braces
   246 |   \item{table.placement}{a character string containing only elements of {\code{"h"}, \code{"t"},\code{"b"}, \code{"p"}, \code{"!"}, \code{"H"}} that determines the table placement in its LaTeX floating environment.}
       |                                                                         ^
Packages required but not available:
  'Rcpp', 'ggplot2', 'scales', 'RcppArmadillo'

Package suggested but not available for checking: ‘spdep’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'
Packages required but not available: 'glmnet', 'cornet'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

Package which this enhances but not available for checking: ‘CVXR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bslib', 'car', 'corrr', 'dplyr', 'ggplot2', 'stringr', 'shiny',
  'shinyjs', 'shinyWidgets'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'snakecase', 'tidyr'

Packages suggested but not available for checking:
  'pander', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'stars', 'nngeo', 'units'

Packages suggested but not available for checking: 'rmarkdown', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'classInt', 'units'

Packages suggested but not available for checking:
  'OpenStreetMap', 'covr', 'cubble', 'cubelyr', 'digest', 'dplyr',
  'exactextractr', 'FNN', 'future.apply', 'ggforce', 'ggplot2',
  'ggthemes', 'gstat', 'lwgeom', 'ncdfgeom', 'ncmeta', 'plm', 'raster',
  'rmarkdown', 'spacetime', 'spatstat', 'spatstat.geom', 'starsdata',
  'terra', 'testthat', 'tidyr', 'tsibble', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leaflet', 'plumber', 'sf', 'stars', 'units'

Packages suggested but not available for checking:
  'rmarkdown', 'leaflet.extras', 'mapview', 'magick', 'shiny', 'dplyr',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'covr', 'fs', 'pkgdown', 'readr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bigmemory', 'future', 'multiApply', 's2dv', 'ClimProjDiags'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CDM', 'LAM', 'sirt', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ks', 'lessR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'tidyr', 'patchwork', 'readr', 'stringr',
  'data.tree', 'Rcpp', 'arrow'

Packages suggested but not available for checking:
  'testthat', 'car', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘duckdb’

Packages suggested but not available for checking:
  'dbplyr', 'dm', 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) AutoPollution.Rd:16: Lost braces
    16 |     \code{Side} \tab {Side of vehicle: code{1}=right or \code{2}=left}\cr
       |                                            ^
Packages required but not available:
  'shiny', 'rmarkdown', 'psycho', 'dplyr', 'Hmisc', 'rpivotTable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Running examples in ‘Statamarkdown-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: find_stata
> ### Title: A helper function that seeks to locate your Stata executable.
> ###   Ordinarily this is run automatically when 'Statamarkdown' is loaded.
> ### Aliases: find_stata
> 
> ### ** Examples
> 
> indoc <- '
+ # An R console example
+ ## In a first code chunk, set up with
+ ```{r}
+ library(Statamarkdown)
+ ```
+ 
+ ## Then mark Stata code chunks with
+ ```{stata}
+ sysuse auto, clear
+ generate gpm = 1/mpg
+ summarize price gpm
+ ```
+ '
> 
> if (!is.null(Statamarkdown::find_stata())) {
+   # To run this example, remove tempdir().
+   fmd <- file.path(tempdir(), "test.md")
+   fhtml <- file.path(tempdir(), "test.html")
+ 
+   knitr::knit(text=indoc, output=fmd)
+   rmarkdown::render(fmd, "html_document", fhtml)
+ }
No Stata executable found.
Warning in min(grep("[[:alnum:]]", y)) :
  no non-missing arguments to min; returning Inf
Error in loadNamespace(x) : there is no package called ‘rmarkdown’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available: 'dplyr', 'ggplot2', 'stringr'

Packages suggested but not available for checking:
  'lubridate', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'testthat', 'EnvStats', 'BSDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'reshape2', 'qs', 'qpdf', 'DT', 'readr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'ggplot2', 'rmarkdown'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘spelling’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'e1071', 'MBA', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking: 'viridis', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'scales'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'optimx', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'stringr', 'rmarkdown', 'covr', 'pkgdown',
  'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'sommer', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'lme4', 'statgenSTA'

Packages suggested but not available for checking:
  'asreml', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'animation', 'factoextra', 'ggforce', 'ggplot2', 'ggnewscale',
  'LMMsolver', 'lubridate', 'reshape2', 'scales', 'spam', 'SpATS'

Packages suggested but not available for checking: 'asreml', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'statgenGWAS', 'stringi', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'statgenGWAS', 'ggplot2', 'LMMsolver', 'scales', 'spam',
  'statgenIBD', 'stringi'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'sommer', 'statgenGWAS', 'RcppArmadillo'

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggrepel', 'lme4', 'qtl', 'scales', 'SpATS'

Packages suggested but not available for checking:
  'asreml', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'rARPACK'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'readr', 'downloader', 'lubridate', 'lutz', 'stringr',
  'tidyr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kutils', 'rmarkdown'

Packages suggested but not available for checking: 'rockchalk', 'pander'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'survey', 'ggplot2'

Packages suggested but not available for checking: 'Hmisc', 'RANN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘covr’
Found the following possibly unsafe calls:
File ‘statnet.common/R/control.utilities.R’:
  unlockBinding("snctrl", environment(snctrl))
  unlockBinding("snctrl", environment(update_my_snctrl))
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'tergm', 'ergm.count', 'tsna', 'ergm', 'networkDynamic'

Packages suggested but not available for checking:
  'ergm.rank', 'ergm.ego', 'EpiModel', 'degreenet', 'latentnet',
  'networksis', 'ndtv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'ergm', 'latticeExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'readr', 'stringi', 'stringr', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'ragg', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'stringr', 'tidytext', 'wordcloud'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'rmarkdown', 'psycho', 'dplyr', 'Hmisc', 'rpivotTable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'readr'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'lubridate', 'rmarkdown', 'stringr', 'testthat',
  'tidyr', 'pkgdown', 'kableExtra', 'leaflet', 'geojsonsf',
  'htmltools', 'tmap', 'pct', 'spatstat.geom', 'osmdata', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'asbio', 'car', 'MVN', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'stringr', 'lubridate'

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'afex', 'BayesFactor', 'dplyr', 'PMCMRplus', 'tidyr', 'WRS2'

Packages suggested but not available for checking:
  'ggplot2', 'metaBMA', 'metaplus', 'rmarkdown', 'rstantools',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'rmarkdown', 'readr', 'shinydisconnect', 'kableExtra',
  'car', 'DDoutlier', 'energy', 'ggplot2', 'reshape2'

Packages suggested but not available for checking:
  'DescTools', 'Hmisc', 'reticulate', 'fastDummies', 'semPlot',
  'FactoMineR', 'FactoInvestigate', 'factoextra', 'rrcov',
  'imputeMissings', 'onewaytests'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BayesFactor', 'dplyr', 'rmarkdown', 'ggplot2', 'broom', 'shiny',
  'cubature', 'tidyr'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DescTools', 'dplyr', 'DT', 'ggplot2', 'plotly', 'rhandsontable',
  'rio', 'shiny', 'shinyalert', 'shinyBS', 'shinyjs', 'sortable',
  'stringi', 'stringr', 'teachingApps', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'GGally', 'dplyr', 'reshape2', 'ggdendro', 'ggfortify',
  'ggrepel', 'gbm', 'pROC', 'factoextra', 'pvca', 'glmnet',
  'rmarkdown', 'pheatmap', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘VCA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'sf', 'dplyr', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'manymome'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘drgee’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'JADE', 'energy'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘igraph’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'TMB', 'sf', 'fmesher', 'ggplot2', 'dplyr', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spatstat.geom', 'hawkesbow', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) keypoints.Rd:35-36: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) keypoints.Rd:37-39: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) keypoints.Rd:40-44: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) keypoints.Rd:45-48: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) keypoints.Rd:49-50: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) keypoints.Rd:63-65: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) keypoints.Rd:66-67: Lost braces in \enumerate; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘lmfor’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'MCMCglmm', 'ggplot2', 'distances', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'devtools', 'lintr', 'pkgdown', 'rhub', 'roxygen2',
  'spelling', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'SimMultiCorrData', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FD', 'ade4', 'geometry', 'ape'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spm', 'steprf'

Packages suggested but not available for checking: 'rmarkdown', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qpdf’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rsq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'Rfast'

Packages suggested but not available for checking:
  'rmarkdown', 'swCRTdesign', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'pROC', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'car', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spm', 'spm2'

Packages suggested but not available for checking: 'rmarkdown', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'lowpassFilter', 'R.cache', 'digest'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'SplitGLM', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'mvnfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'raster', 'future', 'future.apply', 'rasterVis'

Packages suggested but not available for checking:
  'testthat', 'fields', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'shiny', 'Rcpp', 'svgViewR'

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'redux', 'reticulate', 'rmarkdown', 'testthat'
checkRd: (-1) docker_config_collection.Rd:11: Lost braces; missing escapes or markup?
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("config")}
       | ^
checkRd: (-1) docker_container.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_container")}
       | ^
checkRd: (-1) docker_image_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("image")}
       | ^
checkRd: (-1) docker_plugin_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("plugin")}
       | ^
checkRd: (-1) docker_service_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("service")}
       | ^
checkRd: (-1) docker_task.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_task")}
       | ^
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'labelled', 'arm', 'dplyr', 'lme4', 'stringr',
  'rmarkdown', 'tidyr'

Packages suggested but not available for checking: 'RSQLite', 'dbplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'systemfonts'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'fda', 'raster', 'rasterVis'

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘e1071’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'kernlab'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'tidyr', 'xml2', 'xslt'

Packages suggested but not available for checking:
  'covr', 'learnr', 'readxl', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Ryacas’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘forecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'nnfor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat', 'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.linnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'yaImpute', 'Rcpp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'nnfor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stm', 'tm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stm', 'shinyjs', 'shinythemes', 'tm', 'shiny', 'shinyBS'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stm', 'tidygraph', 'ggraph', 'igraph', 'ggrepel', 'shiny',
  'shinyBS', 'shinydashboard', 'shinyjs', 'ggplot2', 'stringr',
  'dplyr', 'readr', 'huge', 'scales'

Packages suggested but not available for checking: 'quanteda', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'reshape2', 'fields'

Packages suggested but not available for checking: 'demography', 'MTS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RcppParallel', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'glmnet', 'quanteda', 'stringr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'geometry', 'huge', 'igraph', 'LDAvis', 'Rtsne', 'spelling',
  'testthat', 'tm', 'wordcloud'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggfittext', 'ggplot2', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fields', 'rARPACK'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'doRNG', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Argument items with no description in Rd file 'd.sum.of.mixtures.EXPLN.Rd':
  ‘p.vector’
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TMB', 'ggplot2', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'shiny', 'rmarkdown', 'stochvol'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dvmisc', 'Hmisc', 'lubridate', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'pander'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'permutations', 'partitions', 'disordR', 'spray'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fields', 'gmp', 'latex2exp', 'optimx', 'sparr', 'spatstat.explore',
  'spatstat.geom', 'spatstat.linnet', 'spatstat.random',
  'spatstat.model', 'stlnpp', 'stpp', 'etasFLP'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'smacof', 'rgl', 'cordillera', 'minerva', 'energy', 'DiceOptim',
  'tgp', 'pomp', 'nloptr'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'quanteda', 'spelling', 'testthat'
Running ‘lint.R’ [0s/1s]
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/lint.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘rjson’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rworldmap', 'sf', 'stringr', 'terra'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Packages suggested but not available for checking:
  'RSQLite', 'RPostgres', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rvest', 'stringr'

Packages suggested but not available for checking: 'imager', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'readr', 'stringr', 'tidyjson', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'urltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘scales’

Packages suggested but not available for checking:
  'R.rsp', 'UsingR', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lwgeom', 'nabor', 'od', 'Rcpp', 'sf', 'sfheaders'

Packages suggested but not available for checking:
  'cyclestreets', 'dodgr', 'igraph', 'leaflet', 'mapsapi',
  'opentripplanner', 'osrm', 'pct', 'rmarkdown', 'testthat', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'nloptr', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'interp', 'extraDistr', 'Rcpp', 'RcppArmadillo', 'RcppGSL'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'rgl', 'spatstat.explore', 'spatstat.geom',
  'spatstat.random'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'sf', 'ks', 'terra', 'raster', 'SiMRiv', 'stringr',
  'lubridate', 'spatstat.geom', 'sparr', 'ggplot2', 'geosphere',
  'leaflet', 'cowplot', 'gstat', 'otuSummary', 'progressr',
  'future.apply'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'reshape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) powderymildew.Rd:14-16: Lost braces
    14 | \code{$demographic.coord}{
       |                          ^
checkRd: (-1) powderymildew.Rd:18-20: Lost braces
    18 | \code{$genetic.coord}{
       |                      ^
checkRd: (-1) powderymildew.Rd:22-24: Lost braces
    22 | \code{$demographic.measures}{
       |                             ^
checkRd: (-1) powderymildew.Rd:26-28: Lost braces
    26 | \code{$genetic.frequencies}{
       |                            ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rglpk', 'dplyr', 'tidyr', 'arrow', 'lubridate', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'shiny', 'shinyFiles', 'shinyjs', 'DT',
  'Rsymphony', 'officer', 'flextable', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ape’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'Hmisc'

Packages suggested but not available for checking:
  'optmatch', 'rmarkdown', 'testthat', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gt’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rglpk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Auto-generated content requiring editing in Rd file 'strategicplayers-package.Rd':
  \details: ‘...o use the package, including the most important functions ~~’
  \references: ‘~~ Literature or other references for background information ~~’
Skipping checking math rendering: package 'V8' unavailable
Found the following files/directories:
  ‘myNewStrat.R’
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'DiagrammeR', 'DiagrammeRsvg', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'StrathE2E2examples', 'testthat'
checkRd: (-1) StrathE2E2-package.Rd:70: Lost braces; missing escapes or markup?
    70 | {Basic model operations:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:79: Lost braces; missing escapes or markup?
    79 | {Parameter estimation:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:88: Lost braces; missing escapes or markup?
    88 | {Sensitivity and Monte Carlo analyses:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:98: Lost braces; missing escapes or markup?
    98 | {Compare model runs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:105: Lost braces; missing escapes or markup?
   105 | {Fishery yield analysis:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:111: Lost braces; missing escapes or markup?
   111 | {Visualize model inputs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:117: Lost braces; missing escapes or markup?
   117 | {Visualize model outputs:} \cr
       | ^
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > #
  > # A few long running tests make use of the testthat::skip_on_cran() mechanism so that they don't run when on CRAN
  > #
  > # This skip function relies on devtools package setting an environment variable NOT_CRAN, so if you want to run the tests
  > # locally you must either use devtools or set this variable explicitly yourself:
  > #
  > # cd StrathE2E2
  > # R
  > # > library(StrathE2E2)
  > # > Sys.setenv(NOT_CRAN="true")
  > # > testthat::test_dir("tests")
  > #
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ranger', 'glmnet', 'ggplot2', 'ggparty'

Packages suggested but not available for checking:
  'rmarkdown', 'BART', 'pROC', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'C50', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'transport', 'Rglpk', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'BalancedSampling', 'testthat', 'StatMatch',
  'prettydoc', 'ggplot2', 'viridis', 'rgeos', 'geojsonio', 'sf',
  'rmapshaper'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mc2d’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'shiny', 'reshape'

Packages suggested but not available for checking:
  'astrochron', 'RFOC', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ape', 'phangorn', 'igraph', 'gmp', 'ggplot2', 'ggtree', 'RcppAlgos'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'partitions', 'MultAlloc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'ggplot2', 'pcaPP', 'ks'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘samr’
Packages required but not available: 'Ckmeans.1d.dp', 'Seurat', 'SPECK'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'igraph', 'asbio'

Packages suggested but not available for checking:
  'ggplot2', 'sf', 'rmarkdown', 'bookdown', 'devtools', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rmpfr', 'dplyr', 'sf'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'tidyr', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘suntools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stream’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dbscan', 'fpc', 'Rcpp'

Packages suggested but not available for checking:
  'animation', 'dplyr', 'RSQLite', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'ndjson'

Package suggested but not available for checking: ‘ROAuth’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘drc’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘latticeExtra’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'stringr', 'stringi'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'dplyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'
Documented arguments not in \usage in Rd file 'get_groups.Rd':
  ‘groups’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Running ‘test-all.R’ [0s/1s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking:
  'qs', 'rmarkdown', 'usethis', 'dplyr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/stringi.Rcheck/00install.out’ for details.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringi’

Packages suggested but not available for checking:
  'covr', 'dplyr', 'gt', 'htmltools', 'htmlwidgets', 'rmarkdown',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘stringi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'faraway', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'caret', 'e1071', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ShortRead', 'tidyr', 'dplyr', 'stringr'

Package suggested but not available for checking: ‘STRaitRazoR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'calendar', 'dplyr', 'ggplot2', 'gtsummary', 'lubridate',
  'rankinPlot', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'devtools', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'car', 'ggplot2', 'lme4', 'lmerTest', 'pbkrtest', 'phia',
  'survey'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘forecast’

Packages suggested but not available for checking:
  'testthat', 'demography', 'rmarkdown', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'car', 'dynlm', 'e1071'
efpFunctional: multiple local function definitions for ‘plotProcess’
  with different formal arguments
mefp.efp: multiple local function definitions for ‘computeEmpProc’ with
  different formal arguments
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'car', 'dynlm', 'e1071', 'bfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'raster', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ape’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'reshape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'penalized'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'gWidgets2', 'gWidgets2tcltk', 'plyr', 'scales', 'DT',
  'dplyr', 'plotly'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘MplusAutomation’
Packages required but not available:
  'readr', 'tidyr', 'dplyr', 'skimr', 'visdat', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'tidyverse', 'CCA', 'MatrixCorrelation', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'fields', 'ggmap', 'ggplot2', 'ggridges', 'gstat', 'lubridate',
  'spacetime', 'stars', 'tidyr'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'ncmeta', 'units', 'cubelyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘R.cache’

Packages suggested but not available for checking:
  'data.tree', 'digest', 'rmarkdown', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'e1071'

Packages suggested but not available for checking:
  'stringi', 'networkD3', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) subdetect-package.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) subdetect-package.Rd:12: Lost braces in \itemize; meant \describe ?
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'glmnet', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ade4', 'SIBER', 'polyclip', 'wordcloud'

Packages suggested but not available for checking:
  'adegraphics', 'ape', 'maptools', 'spdep'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'RBGL', 'BiasedUrn'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Documented arguments not in \usage in Rd file 'subsamp.Rd':
  ‘x:’ ‘y:’ ‘s:’ ‘m:’ ‘qnum:’ ‘wplot:’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘sirt’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plyr', 'shiny', 'DT', 'shinyjs', 'bsplus', 'colourpicker', 'dplyr',
  'ranger', 'shinyWidgets'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/subselect.Rcheck/00install.out’ for details.
Package required but not available: ‘SuperLearner’

Packages suggested but not available for checking:
  'arm', 'caret', 'cvAUC', 'e1071', 'gbm', 'glmnet', 'Hmisc', 'ipred',
  'SIS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggvis', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘copula’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'GSVA', 'igraph', 'pheatmap', 'rvest', 'xml2', 'ChemmineR'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plotly', 'Rfast', 'ggrepel'

Packages suggested but not available for checking:
  'rmarkdown', 'vlad', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'reticulate'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'ggplot2', 'readr', 'tidyr', 'ggrepel',
  'patchwork', 'naniar', 'scales'

Packages suggested but not available for checking:
  'haven', 'DT', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'dplyr', 'geosphere', 'rmapshaper', 'sf', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'pkgdown', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
checkRd: (-1) suggests.Rd:14: Lost braces; missing escapes or markup?
    14 | {suggests} aims to make that workflow as minimal and painless as possible,
       | ^
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'dplyr', 'lubridate'

Packages suggested but not available for checking:
  'covr', 'plotly', 'readr', 'rmarkdown', 'testthat', 'tidyr',
  'tsibble', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'seqminer', 'GBJ'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'htmltools', 'lubridate', 'magick', 'pander', 'pryr',
  'rapportools', 'tidyr'

Packages suggested but not available for checking:
  'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dreamerr', 'collapse'

Packages suggested but not available for checking:
  'ggplot2', 'latex2exp', 'fixest', 'haven', 'testthat', 'rmarkdown',
  'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'survey', 'spdep', 'ggplot2', 'scales', 'reshape2', 'viridis',
  'shadowtext', 'ggridges'

Packages suggested but not available for checking:
  'INLA', 'rmarkdown', 'readstata13', 'patchwork', 'rdhs', 'R.rsp',
  'fields', 'sae', 'dplyr', 'tidyr'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'pARI', 'ARIbrain', 'RNifti'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'd3r', 'dplyr', 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'tidyr', 'rmarkdown'

Package which this enhances but not available for checking: ‘treemap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'sf', 'dplyr', 'terra', 'raster', 'stringr', 'RANN', 'cartogram',
  'packcircles', 'rmapshaper', 'spdep', 'Rcpp', 'automap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ddiv', 'stringr', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Auto-generated content requiring editing in Rd file 'supcluster-package.Rd':
  \references: ‘~~ Literature or other references for background information ~~’
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
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checkRd: (-1) plot.Rd:42: Lost braces; missing escapes or markup?
    42 |  \item{color.off}{color code; specifying the color for set(s) which are "{absent}" for an intersection.}
       |                                                                          ^
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'e1071', 'extraTrees', 'gbm', 'genefilter', 'ggplot2', 'glmnet',
  'ipred', 'KernelKnn', 'kernlab', 'nloptr', 'prettydoc', 'ranger',
  'ROCR', 'rmarkdown', 'SIS', 'sva', 'testthat', 'xgboost'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Packages suggested but not available for checking:
  'arm', 'bartMachine', 'e1071', 'extraTrees', 'gbm', 'glmnet',
  'ipred', 'KernelKnn', 'kernlab', 'ranger', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
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  'xgboost', 'glmnet', 'e1071'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'stringr'

Packages suggested but not available for checking:
  'car', 'covr', 'lintr', 'lme4', 'testthat', 'tidyr', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'OpenImageR', 'RcppArmadillo', 'ClusterR'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'afex', 'ggplot2', 'reshape2', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'jmvcore', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SuppDists.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘DoE.base’
Skipping checking math rendering: package 'V8' unavailable
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Running examples in ‘support.BWS3-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bws3.dataset
> ### Title: Creating a dataset suitable for Case 3 best-worst scaling
> ###   analysis
> ### Aliases: bws3.dataset
> ### Keywords: manip
> 
> ### ** Examples
> 
> # The following lines of code construct choice sets for Case 3 BWS
> # using rotation.design() in the package support.CEs; create a dataset
> # for the analysis using bws3.dataset(); and then conduct a maxdiff model
> # analysis on the basis of a conditional logit model specification
> # using clogit() in the package survival.
> 
> # Load packages
> library(support.CEs)
Error in library(support.CEs) : there is no package called ‘support.CEs’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'scales', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘ape’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'cubature', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
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Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Packages required but not available:
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Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Package required but not available: ‘cubature’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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Packages suggested but not available for checking:
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  'hhh4contacts', 'memoise', 'polyclip', 'intervals', 'sf'

Package which this enhances but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rstantools', 'Rcpp', 'RcppParallel', 'rstan', 'tidybayes', 'dplyr',
  'tidyr', 'ggplot2', 'scales', 'ggdist', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nloptr', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
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  'parsnip', 'progressr', 'randomForestSRC', 'ranger', 'reticulate',
  'rmarkdown', 'rms', 'testthat', 'treeshap', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
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Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'candisc', 'survey'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

Packages suggested but not available for checking:
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
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Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggupset', 'gt', 'scales', 'stringr', 'tidyr'

Packages suggested but not available for checking:
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'huxtable', 'survey'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
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  'sf', 'nloptr', 'xgboost', 'plyr', 'scales', 'dplyr', 'RcppAlgos',
  'groupdata2', 'Rcpp', 'Rsymphony', 'RcppEigen', 'PoissonBinomial'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'rmarkdown', 'tidyr', 'ggplot2', 'viridis',
  'PoissonBinomial', 'gurobi', 'Rmpfr', 'runjags'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flexsurv', 'dplyr', 'ggplot2', 'rms'

Packages suggested but not available for checking:
  'survHEinla', 'survHEhmc', 'INLA', 'rstan', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readr', 'tidyverse', 'glmnet', 'factoextra', 'igraph', 'useful'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'np', 'doRNG', 'Rcpp', 'ggplot2', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'survminer', 'ggplot2'

Packages suggested but not available for checking: 'tidyverse', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'tidyr', 'ggplot2', 'scales', 'survminer',
  'cowplot', 'tidytidbits'

Packages suggested but not available for checking: 'rmarkdown', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'gridtext', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'distr6', 'keras', 'pseudo', 'reticulate', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'copula', 'splines2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
checkRd: (-1) hoel.Rd:14: Lost braces
    14 |     \item{\code{outcome}}{outcome: code{censor}, \code{thymic
       |                                        ^
checkRd: (-1) tmerge.Rd:42-67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tmerge.Rd:57: Lost braces
    57 |  \item{newname = cumtdc(y,x, init)}{ Similar to tdc, except that the event
       |       ^
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    57 |  \item{newname = cumtdc(y,x, init)}{ Similar to tdc, except that the event
       |                                    ^
checkRd: (-1) tmerge.Rd:62: Lost braces
    62 |  \item{newname = event(y,x)}{ Mark an event at time y.
       |       ^
checkRd: (-1) tmerge.Rd:62-65: Lost braces
    62 |  \item{newname = event(y,x)}{ Mark an event at time y.
       |                             ^
checkRd: (-1) tmerge.Rd:66: Lost braces
    66 |  \item{newname = cumevent(y,x)}{ Cumulative events}.
       |       ^
checkRd: (-1) tmerge.Rd:66: Lost braces
    66 |  \item{newname = cumevent(y,x)}{ Cumulative events}.
       |                                ^
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'Rcpp', 'glmnet', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kernlab', 'Hmisc'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tidyr', 'ggplot2', 'stringr', 'shiny', 'dplyr', 'readr',
  'shinycssloaders', 'lubridate', 'DT', 'shinyjs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Unknown package ‘survJamda’ in Rd xrefs
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'survminer', 'pec', 'randomForestSRC'

Packages suggested but not available for checking:
  'rmarkdown', 'caret', 'ggplot2', 'ggpubr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggpubr', 'scales', 'broom', 'dplyr', 'tidyr', 'survMisc',
  'ggtext'

Packages suggested but not available for checking:
  'flexsurv', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘SuperLearner’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'openxlsx'

Packages suggested but not available for checking:
  'covr', 'reshape2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'broom', 'dplyr', 'ggplot2', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'survminer', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
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'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘latticeExtra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'nloptr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'broom', 'doFuture', 'dplyr', 'extraDistr', 'future', 'ggplot2',
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'tidyr', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking:
  'GGally', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) coxDT.Rd:76: Lost braces; missing escapes or markup?
    76 | The estimation procedure here is performed using coxph {survival} and inserting these estimated
       |                                                        ^
Packages required but not available: 'mixsqp', 'reshape', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'Rfast', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'readr', 'stringr', 'lubridate'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reshape2', 'ggplot2', 'copula', 'steadyICA', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'tsDyn'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
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Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'spelling', 'covr', 'rmarkdown'
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Package required but not available: ‘systemfonts’

Packages suggested but not available for checking:
  'covr', 'htmltools', 'rmarkdown', 'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking: 'htmltools', 'svglite'

Package which this enhances but not available for checking: ‘xml2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'stringr', 'magick'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
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Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'rjson', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'spelling', 'covr', 'rmarkdown'
Packages required but not available:
  'rvinecopulib', 'Rcpp', 'univariateML', 'wdm', 'RcppEigen',
  'RcppThread'

Packages suggested but not available for checking:
  'testthat', 'ggraph', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'spelling', 'covr', 'rmarkdown'
checkRd: (-1) koInstall.Rd:24: Lost braces; missing escapes or markup?
    24 | set, svKomodo loads {svSocket}, starts the socket server listening to the
       |                     ^
checkRd: (-1) svKomodo-package.Rd:18: Lost braces; missing escapes or markup?
    18 | Komodo and (2) the present {svKomodo} R package that work hand in hand to
       |                            ^
checkRd: (-1) svKomodo-package.Rd:28: Lost braces; missing escapes or markup?
    28 | Nevertheless, the SciViews-K Komodo addin and the {svKomodo} R package
       |                                                   ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                          ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                                         ^
checkRd: (-1) svKomodo-package.Rd:37: Lost braces; missing escapes or markup?
    37 | Both SciViews-K and {svKomodo} should be considered archived items. I keep
       |                     ^
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'spelling'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘kernlab’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'memoise'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown', 'tidycensus', 'dplyr', 'srvyr',
  'prettydoc', 'RSQLite'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘svmpath’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'spelling', 'covr', 'rmarkdown'
checkRd: (-1) svSocket-package.Rd:12: Lost braces; missing escapes or markup?
    12 | The SciViews {svSocket} package provides a stateful, multi-client and
       |              ^
checkRd: (-1) svSocket-package.Rd:16: Lost braces; missing escapes or markup?
    16 | thus, it needs a working version of Tcl/Tk (>= 8.4) and of the {tcltk} R
       |                                                                ^
checkRd: (-1) svSocket-package.Rd:33: Lost braces; missing escapes or markup?
    33 | efficient as, say {Rserver} ({Rserver} exchanges R objects in binary format,
       |                   ^
checkRd: (-1) svSocket-package.Rd:33: Lost braces; missing escapes or markup?
    33 | efficient as, say {Rserver} ({Rserver} exchanges R objects in binary format,
       |                              ^
checkRd: (-1) svSocket-package.Rd:34: Lost braces; missing escapes or markup?
    34 | but {Rserver} is not stateful, clients do not share the same global workspace
       |     ^
'LazyData' is specified without a 'data' directory
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking:
  'covr', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'spelling'
Package required but not available: ‘survey’

Package suggested but not available for checking: ‘doBy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'rms', 'survey'

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survey’

Packages suggested but not available for checking:
  'dplyr', 'srvyr', 'testthat', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'plumber', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘caret’

Packages suggested but not available for checking:
  'e1071', 'ggplot2', 'glmnet', 'kernlab', 'ModelMetrics', 'plyr',
  'pROC', 'recipes', 'reshape2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'amap', 'gplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'broom.mixed', 'dplyr', 'lme4'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ROCR', 'reshape', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geosphere', 'lubridate'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'xml2'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lme4', 'lmerTest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'fields', 'nloptr', 'rmarkdown', 'devtools'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘spatstat.random’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'quanteda', 'LiblineaR'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'forecast', 'lubridate', 'tidyr', 'timetk',
  'tidyverse', 'tidyquant'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'readr', 'stringr', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lubridate', 'stringr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'swephRdata', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'readr', 'stringr', 'swfscDAS', 'swfscMisc',
  'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'readr', 'sf', 'swfscMisc', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggrepel', 'kknn', 'runjags', 'sf',
  'spatstat.geom', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'rvest', 'pdftools', 'xml2', 'readr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'dplyr', 'ggplot2'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'reshape2', 'plyr', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'rmarkdown', 'bookdown', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'htmlwidgets'

Packages suggested but not available for checking:
  'ggplot2', 'ggthemes', 'shiny', 'shinyWidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'swirl', 'stringr', 'rmarkdown', 'shiny', 'shinyAce', 'readr'

Packages suggested but not available for checking: 'testthat', 'digest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'testthat', 'digest'

Package suggested but not available for checking: ‘stringi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tidyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
'LazyData' is specified without a 'data' directory
Package required but not available: ‘RJSONIO’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'hpa', 'mnorm', 'gena', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'SWMPr', 'EnvStats', 'broom', 'dplyr', 'flextable', 'ggimage',
  'ggplot2', 'ggthemes', 'lubridate', 'officer', 'scales', 'sf',
  'tidyr'

Packages suggested but not available for checking: 'ggmap', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'oce', 'dplyr', 'openair', 'reshape2', 'suncalc', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggmap', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'readr', 'stringr', 'rmarkdown', 'reshape2',
  'ggplot2', 'ggmap', 'hydroTSM', 'sf', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) hyph.support.en.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hyph.support.en.Rd:20: Lost braces in \itemize; meant \describe ?
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'sylly.de', 'sylly.es'
checkRd: (-1) kRp.hyphen-methods.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:56: Lost braces in \itemize; meant \describe ?
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # the tests are realized using the "testthat" package
  > # and can be found in ./tests
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
checkRd: (-1) elliptical.ts.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{epsilon}{positive convergence tolerance \emph{e}; the iterations converge when |fit - fit_{old}|/|fit| < \emph{e}. Default is \emph{e=1e-04}.}
       |                                                                                                   ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'htmltools', 'shiny', 'nextGenShinyApps', 'r2symbols',
  'shinyStorePlus'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'clusterSim', 'shapes', 'e1071', 'ade4', 'RSDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'arrangements', 'fs'

Packages suggested but not available for checking: 'rmarkdown', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ff’

Package suggested but not available for checking: ‘BGData’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'odeintr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘cubature’

Packages suggested but not available for checking: 'ape', 'mpoly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'harmony', 'uwot', 'dplyr', 'ggplot2', 'tidyr', 'RANN',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggthemes', 'ggrastr', 'ggrepel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'ggpubr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caracas', 'OpenMx', 'metaSEM'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) coord2dist.Rd:14: Lost braces; missing escapes or markup?
    14 | \code{n} x 4 matrix of coordinates consisting of {lat or y, lon or x} pairs for each each site
       |                                                  ^
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Invalid package aliases in Rd file 'syncrng-package.Rd':
  ‘syncrng-package’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'FD', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mice', 'dplyr', 'StackImpute', 'arm', 'broom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'testthat', 'spelling'
'LazyData' is specified without a 'data' directory
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'dbscan'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'rmarkdown', 'tidyr', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'haven', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'acs', 'retry'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'qpdf', 'WASP', 'rmarkdown', 'testthat', 'devtools'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'ranger', 'classInt', 'stringr', 'broman'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kernlab', 'optimx', 'rgenoud'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'synthpop', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ape', 'dplyr', 'ggplot2', 'ggtree', 'patchwork', 'plyr', 'stringr',
  'tm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Packages suggested but not available for checking: 'plm', 'sem'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/systemfonts.Rcheck/00install.out’ for details.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘partitions’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'textshape', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'devtools', 'pander', 'readxl', 'rmarkdown', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'shiny', 'shinydashboardPlus', 'shinydashboard', 'shinycssloaders',
  'dplyr', 'highcharter', 'stringr', 'tables', 'tidyr', 'htmltools'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'Rdimtools', 'ADMM', 'fda', 'ggplot2', 'maotai',
  'mclustcomp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CVXR', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'janitor', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘openxlsx’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

Packages suggested but not available for checking:
  'MatchIt', 'rmarkdown', 'kableExtra', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Packages required but not available: 'MOTE', 'dplyr', 'mirt', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tableone’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'dplyr'
Documented arguments not in \usage in Rd file 'table_params_circle.Rd':
  ‘d’

Documented arguments not in \usage in Rd file 'table_params_rect.Rd':
  ‘d’ ‘scale_breaks’ ‘r_max’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘stringi’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'dplyr', 'tidyr', 'gt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) tmCtypes.Rd:22: Escaped LaTeX specials: \#
Packages required but not available: 'survey', 'e1071', 'labelled'

Packages suggested but not available for checking:
  'testthat', 'Matching', 'reshape2', 'ggplot2', 'geepack', 'lme4',
  'lmerTest', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools'

Packages suggested but not available for checking:
  'shinyWidgets', 'shinyEffects', 'echarts4r'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'future', 'jsonvalidate', 'lubridate', 'stringr', 'urltools'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'tables'

Packages suggested but not available for checking:
  'ggtext', 'gridtext', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmltools’

Packages suggested but not available for checking:
  'kableExtra', 'Hmisc', 'bookdown', 'rmarkdown', 'pkgdown',
  'formatters'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'yamlet', 'tidyr', 'kableExtra', 'spork', 'fs', 'reactable'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'shiny', 'shinyFiles', 'haven', 'sortable',
  'csv', 'shinyAce'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'openxlsx'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'torch', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'data.tree', 'modeldata', 'recipes', 'rsample',
  'parsnip', 'dials', 'rmarkdown', 'vip', 'tidyverse', 'ggplot2',
  'stringr', 'tune', 'workflows', 'yardstick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages required but not available: 'dplyr', 'kableExtra', 'survey'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Packages suggested but not available for checking:
  'htmltools', 'kableExtra', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'testthat', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'bookdown', 'readr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fasterize', 'raster', 'silicate', 'spatstat.geom'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'svglite', 'tinysnapshot'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggforce', 'ggplot2'

Packages suggested but not available for checking:
  'zipangu', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'emoji'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'lubridate', 'readr'
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |   ^
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |                      ^
'LazyData' is specified without a 'data' directory
Running examples in ‘tabulog-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: parse_logs
> ### Title: Parse Log Files
> ### Aliases: parse_logs parse_logs_file
> 
> ### ** Examples
> 
> # Template string with two fields
> template <- '{{ip ipAddress}} - [{{date accessDate}}] {{int status }}'
> 
> # Two simple log records
> logs <- c(
+   '192.168.1.10 - [26/Jul/2019:11:41:10 -0500] 200',
+   '192.168.1.11 - [26/Jul/2019:11:41:21 -0500] 404'
+ )
> 
> # A formatter for the date field
> myFormatters <- list(date = function(x) lubridate::as_datetime(x, format = '%d/%b/%Y:%H:%M:%S %z'))
> # A parser class for the date field
> date_parser <- parser(
+   '[0-3][0-9]\\/[A-Z][a-z]{2}\\/[0-9]{4}:[0-9]{2}:[0-9]{2}:[0-9]{2}[ ][\\+|\\-][0-9]{4}',
+   myFormatters$date,
+   'date'
+ )
> 
> # Parse the logs from raw data
> parse_logs(logs, template, list(date=date_parser))
Error in loadNamespace(x) : there is no package called ‘lubridate’
Calls: parse_logs ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available:
  'dplyr', 'stringr', 'tidyr', 'stringi', 'kableExtra', 'DescTools'

Packages suggested but not available for checking:
  'htmltools', 'openxlsx', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'vdiffr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘latticeExtra’

Packages suggested but not available for checking:
  'covr', 'forecast', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'FastGP', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'latex2exp', 'lubridate', 'plotly', 'readr', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'cowplot', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cubature', 'SpatialExtremes', 'copula'

Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘shiny’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tidyverse', 'ggplot2', 'shinydashboard'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'devEMF', 'broom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fuzzyjoin', 'Rfast', 'stringr', 'tidyr', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CDM', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'miceadds', 'plyr'

Package which this enhances but not available for checking: ‘LSAmitR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'terra', 'sf', 'mapiso'

Packages suggested but not available for checking: 'covr', 'lwgeom'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fastDummies', 'ggplot2', 'igraph', 'janitor', 'ranger'

Packages suggested but not available for checking:
  'R.rsp', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘jiebaR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringi', 'stringr', 'digest', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'rms', 'rmarkdown', 'Hmisc', 'dplyr', 'Matching'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'rgl', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'ape', 'bipartite', 'MPSEM', 'phytools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'dplyr', 'fs', 'targets'

Packages suggested but not available for checking:
  'quarto', 'rmarkdown', 'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringi', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lava', 'digest', 'future.apply', 'optimx', 'progressr', 'mets',
  'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'grf', 'testthat', 'rmarkdown', 'SuperLearner', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'igraph'

Packages suggested but not available for checking:
  'arrow', 'bs4Dash', 'clustermq', 'DT', 'dplyr', 'fst', 'future',
  'future.batchtools', 'future.callr', 'gargle', 'googleCloudStorageR',
  'gt', 'keras', 'rmarkdown', 'paws.common', 'paws.storage', 'pkgload',
  'qs', 'reprex', 'shiny', 'shinybusy', 'shinyWidgets', 'testthat',
  'torch', 'usethis', 'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'shiny', 'igraph', 'tm', 'dplyr', 'wordcloud2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'dplyr', 'plyr', 'reshape2'

Packages suggested but not available for checking: 'rmarkdown', 'tashudata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'scales', 'shadowtext', 'packcircles'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'patternplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'openxlsx', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘tm’
Package required but not available: ‘plyr’

Packages suggested but not available for checking:
  'covr', 'dplyr', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'duckdb', 'dplyr', 'dbplyr', 'stringi', 'contentid', 'memoise'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'covr', 'rmarkdown', 'RSQLite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'thor', 'contentid'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'microbiome', 'phyloseq', 'future', 'future.apply', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'GA', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'RSQLite', 'dplyr', 'readr', 'dbplyr', 'hoardr'

Packages suggested but not available for checking: 'testthat', 'taxize'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'crul', 'xml2', 'ape', 'bold', 'rredlist', 'rotl', 'ritis', 'worrms',
  'natserv', 'wikitaxa', 'phangorn'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'biblio', 'stringi', 'stringr', 'vegdata'

Packages suggested but not available for checking:
  'ape', 'rmarkdown', 'taxa', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'vroom', 'ggplot2', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RSQLite’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'taxize', 'wikitaxa', 'plyr', 'sqldf', 'stringr', 'rmarkdown',
  'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'shinyWidgets'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'
Running examples in ‘tayloRswift-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: scale_color_taylor
> ### Title: Color scale for Taylor Swift colors
> ### Aliases: scale_color_taylor
> 
> ### ** Examples
> 
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mlt', 'coneproj'

Packages suggested but not available for checking:
  'tram', 'latticeExtra', 'trtf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘kernlab’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'TreeDist', 'TreeTools', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'lubridate', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'covr', 'ggalt', 'ggplot2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nloptr’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘reshape2’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'ggplot2', 'ggpubr', 'golem', 'plotly', 'readr',
  'reshape2', 'rstatix', 'scales', 'shiny', 'shinyFeedback', 'shinyjs',
  'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'lme4', 'reshape2', 'cowplot', 'stringr'

Packages suggested but not available for checking:
  'dearseq', 'GEOquery', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'terra', 'geosphere', 'rasterVis', 'raster', 'latticeExtra'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'oro.dicom', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'reshape', 'reshape2', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'mrgsolve'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'scales', 'plotly', 'ggpubr', 'ICSNP',
  'rrcov', 'geometry', 'DT', 'forecast', 'fmri', 'extraDistr',
  'spatstat.explore', 'spatstat.geom', 'cubature', 'reshape2'

Packages suggested but not available for checking: 'oro.nifti', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tclust.Rcheck/00install.out’ for details.
Packages required but not available: 'Mcomp', 'forecast'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'rmarkdown', 'stringi', 'DT', 'tcpl', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RMariaDB', 'sqldf', 'dplyr', 'tidyr', 'plotly', 'tcplfit2',
  'ggplot2', 'stringr'

Packages suggested but not available for checking:
  'roxygen2', 'prettydoc', 'rmarkdown', 'htmlTable', 'testthat',
  'reshape2', 'viridis', 'kableExtra', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'TDAstats', 'T4cluster', 'energy', 'ggplot2', 'maotai',
  'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rdist', 'kernlab', 'Rcpp'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'TDAstats', 'reticulate', 'igraph'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FNN', 'Rcpp', 'igraph', 'scales', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'TDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TDboost.Rcheck/00install.out’ for details.
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'readr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling'
Running ‘spelling.R’ [0s/1s]
  Running ‘test-all.R’ [0s/1s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Ecume', 'readr', 'rmarkdown', 'sf'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RcppSimdJson’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘latticeExtra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'covr', 'testthat', 'devtools', 'GA', 'sonicscrewdriver'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinythemes', 'shinydashboard', 'dplyr', 'DT', 'Rcpp',
  'devtools', 'scales', 'ggplot2', 'RcppNumerical', 'miniUI',
  'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'radarchart', 'networkD3', 'DiagrammeR',
  'visNetwork', 'metricsgraphics', 'leaflet', 'shinyAce', 'plotly',
  'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rgl', 'ggplot2', 'maptools', 'R2wd'
checkRd: (-1) R2txt.Rd:164: Escaped LaTeX specials: \#
checkRd: (-1) bct.Rd:18: Escaped LaTeX specials: \^
checkRd: (-1) bct.Rd:19: Escaped LaTeX specials: \^
checkRd: (-1) ineq.Rd:10: Escaped LaTeX specials: \&
checkRd: (-1) put.points.demo.Rd:39: Escaped LaTeX specials: \^
checkRd: (-1) run.cor.examp.Rd:10: Escaped LaTeX specials: \^
checkRd: (-1) run.cor.examp.Rd:31: Escaped LaTeX specials: \^
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) crossEntropy.Rd:32: Lost braces
    32 | link{squaredError}
       |     ^
Packages suggested but not available for checking:
  'rmarkdown', 'shiny', 'testthat'
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > pkg_name <- "teal.code"
  > library(pkg_name, character.only = TRUE)
  > testthat::test_check(pkg_name)
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > pkg_name <- "teal.data"
  > library(pkg_name, character.only = TRUE)
  Loading required package: teal.code
  > testthat::test_check(pkg_name)
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available:
  'units', 'dplyr', 'furrr', 'future', 'stringr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘shiny’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bslib', 'htmltools', 'rmarkdown', 'shiny', 'shinyWidgets'

Packages suggested but not available for checking:
  'DT', 'ggplot2', 'rtables', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bslib', 'ggplot2', 'htmltools', 'rtables', 'shiny', 'shinyjs',
  'shinyWidgets', 'styler'

Packages suggested but not available for checking:
  'DT', 'shinytest2', 'shinyvalidate', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Packages suggested but not available for checking: 'Lahman', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plyr', 'ggplot2', 'ks'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggplot2', 'sf', 'smoothr', 'spatstat.explore',
  'spatstat.geom', 'terra', 'tidyr', 'viridis'

Packages suggested but not available for checking:
  'ggforce', 'rmarkdown', 'roxygen2', 'testthat', 'tidyterra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'glmnet', 'stringr', 'SuperLearner', 'randomForestSRC'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘roxygen2’
Packages required but not available:
  'cowplot', 'dplyr', 'fields', 'raster', 'scoringRules', 'stringr',
  'ggplot2', 'reshape2', 'scales', 'Rcpp', 'RcppArmadillo', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘httpuv’

Packages suggested but not available for checking:
  'covr', 'devtools', 'promises', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'fs', 'gstat', 'raster', 'Rcpp', 'sf', 'stringr', 'tidyr',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'rgdal', 'rmarkdown', 'stars', 'terrainmeshr', 'tidyverse',
  'testthat', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'lubridate', 'ggplot2'

Packages suggested but not available for checking: 'rerddap', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tm', 'wordcloud', 'arulesViz', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'tsbox', 'testthat', 'rmarkdown', 'covr'
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > # These tests are more extensive and only need to run on GHA, not on CRAN.
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'broom', 'dplyr', 'AICcmodavg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'excursions', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'ciftiTools', 'RNifti', 'oro.nifti', 'gifti', 'covr', 'rmarkdown',
  'INLA', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'dat'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

Packages suggested but not available for checking: 'testthat', 'future'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) tcata.line.plot.Rd:72: Lost braces; missing escapes or markup?
    72 | \item{las}{numeric in {0,1,2,3}; the style of the axis labels. See \code{\link[graphics]{par}}.}
       |                       ^
checkRd: (-1) tds.plot.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{las}{numeric in {0,1,2,3}; the style of the axis labels. See: \code{\link[graphics]{par}}}
       |                       ^
Packages required but not available: 'copula', 'StableEstim'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'np', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'plyr', 'reshape2', 'scales', 'plotly'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'JADE', 'fICA', 'Rcpp', 'tsBSS', 'ICtest', 'ggplot2', 'RcppArmadillo'

Package suggested but not available for checking: ‘stochvol’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TRES', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'reshape2'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'reticulate', 'tfruns', 'tfautograph'

Packages suggested but not available for checking: 'testthat', 'keras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'glmnet', 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > require(testthat)
  Loading required package: testthat
  Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
    there is no package called 'testthat'
  > library("TensorTest2D")
  > test_check("TensorTest2D")
  Error in test_check("TensorTest2D") : 
    could not find function "test_check"
  Execution halted
checkRd: (-1) tenFM.rank.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{penalty}{takes value in {1,2,3,4,5}, decides which penalty function to use for each tesnor mode \eqn{k}. Here \eqn{\nu} is a tuning parameter defined in the argument "\code{delta1}", and \eqn{d=\prod_{i=1}^{K} d_k }.
       |                               ^
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘rainbow’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ergm', 'tergm', 'networkDynamic', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'EpiModel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ergm', 'networkDynamic', 'ergm.multi'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'networkLite'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'discretefit', 'Rcpp'

Packages suggested but not available for checking:
  'dplyr', 'gt', 'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'RcppHungarian', 'shiny'

Packages suggested but not available for checking:
  'colourpicker', 'readxl', 'rmarkdown', 'shinyjs', 'spelling',
  'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tern', 'formatters', 'geeasy', 'geepack', 'rtables'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tern', 'cowplot', 'dplyr', 'formatters', 'ggplot2', 'mmrm',
  'rtables', 'tidyr'

Packages suggested but not available for checking:
  'broom', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rtables', 'broom', 'car', 'cowplot', 'dplyr', 'formatters',
  'ggplot2', 'scales', 'tidyr'

Packages suggested but not available for checking:
  'lubridate', 'nestcolor', 'rmarkdown', 'stringr', 'svglite',
  'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'magick', 'sf', 'terra', 'units'

Packages suggested but not available for checking:
  'covr', 'progressr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'sf', 'leaflet', 'htmlwidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nloptr', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cxhull', 'rgl', 'Rvcg', 'scales'

Packages suggested but not available for checking:
  'paletteer', 'rmarkdown', 'uniformly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘kairos’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'pdftools', 'digest'

Packages suggested but not available for checking:
  'magick', 'spelling', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'mirt', 'shinydashboard', 'EstCRM', 'tidySEM', 'DT',
  'golem', 'shiny', 'officedown', 'stringr', 'dplyr', 'bruceR',
  'officer', 'openxlsx', 'rmarkdown', 'cowplot', 'flextable',
  'shinycssloaders', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'plyr', 'dplyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'
checkRd: (-1) lognormConstCVCI.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lognormConstCVCI.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lognormConstCVCI.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales', 'reshape2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mice', 'Amelia'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'testthat', 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'covr', 'labelled', 'lubridate', 'openxlsx', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'Rsymphony', 'gurobi', 'Rglpk', 'mirt', 'mirtCAT', 'shiny',
  'shinythemes', 'shinyWidgets', 'shinyjs', 'DT', 'rmarkdown',
  'kableExtra', 'testthat', 'pkgdown', 'pkgload'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'Morpho', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Package vignette with \VignetteEngine{} not specifying an engine package:
  ‘tester_introduction.Rnw’
Engines should be specified as \VignetteEngine{PKG::ENG}.
Packages required but not available: 'minerva', 'Hmisc', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'ggplot2', 'lhs', 'testthat'
Running examples in ‘TestFunctions-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: funcprofile
> ### Title: Profile a function
> ### Aliases: funcprofile
> 
> ### ** Examples
> 
> funcprofile(ackley, 2)
Error in loadNamespace(x) : there is no package called ‘lhs’
Calls: funcprofile ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'fda', 'rgl', 'ggplot2', 'plotly', 'dplyr', 'ggpubr', 'stringr',
  'tidyr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'fs', 'readxl', 'usethis', 'CDMConnector', 'dplyr', 'duckdb'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DoseFinding’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘covr’
Packages required but not available: 'digest', 'pkgload'

Packages suggested but not available for checking:
  'covr', 'diffviewer', 'rmarkdown', 'shiny', 'usethis', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'devtools', 'fs', 'pkgload', 'stringi', 'testthat', 'usethis'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'tidyr', 'FactoMineR', 'ggrepel', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'readr', 'stringr', 'lubridate', 'narray', 'imputeTS',
  'scales', 'greybox', 'dqrng', 'Rfast', 'philentropy', 'fastDummies'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fractional’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘hunspell’

Packages suggested but not available for checking:
  'devtools', 'readr', 'stringi', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'tidyr', 'testthat', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rmarkdown', 'pdftools', 'stringr', 'rjtools', 'rebib'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'details', 'fs', 'htmltools', 'magick', 'svgPanZoom', 'xml2'

Packages suggested but not available for checking:
  'covr', 'kableExtra', 'pdftools', 'rmarkdown', 'shiny', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'broom', 'ggplot2', 'huxtable', 'rmarkdown', 'systemfit', 'testthat'

Packages which this enhances but not available for checking:
  'AER', 'alpaca', 'Bergm', 'bife', 'brms', 'btergm', 'dynlm', 'erer',
  'ergm', 'feisr', 'fixest', 'forecast', 'glmmTMB', 'latentnet',
  'lme4', 'logitr', 'maxLik', 'metaSEM', 'mhurdle', 'miceadds',
  'mlogit', 'mnlogit', 'oglmx', 'pglm', 'plm', 'rms', 'robust',
  'spatialreg', 'spdep', 'truncreg', 'Zelig'
Running examples in ‘texreg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: createTexreg
> ### Title: Constructor for texreg objects
> ### Aliases: createTexreg
> 
> ### ** Examples
> 
> library("nlme")  # load library for fitting linear mixed effects models
Error in library("nlme") : there is no package called ‘nlme’
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'text2vec', 'stringi', 'dplyr', 'qgraph', 'igraph', 'ClusterR'

Packages suggested but not available for checking:
  'testthat', 'quanteda', 'tm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'corpustools', 'tidyr', 'stringr', 'ggplot2', 'ranger'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'aws.signature', 'dplyr', 'googleAuthR', 'googleLanguageR', 'tidyr'

Packages suggested but not available for checking:
  'aws.polly', 'covr', 'patrick', 'rmarkdown', 'stringi', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'rsparse', 'stringi', 'digest'

Packages suggested but not available for checking:
  'udpipe', 'glmnet', 'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'lexicon', 'qdapRegex', 'stringi', 'textshape'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'readr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'plyr', 'ggplot2', 'stringr', 'textdata', 'tidytext',
  'tidyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'forecast', 'tidyr', 'tidytext', 'tm', 'wordcloud', 'dplyr', 'plyr',
  'udpipe', 'ggplot2', 'glmnet', 'pdftools'

Packages suggested but not available for checking: 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'text2vec', 'stringr', 'Rcpp', 'RSpectra', 'RcppArmadillo'

Packages suggested but not available for checking:
  'spelling', 'digest', 'dplyr', 'igraph', 'rmarkdown', 'stringi',
  'testthat', 'tidyr', 'tidytext', 'topicmodels', 'wordcloud'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'syuzhet', 'dplyr', 'tidyr', 'tidytext', 'tm', 'ggplot2',
  'ggwordcloud'

Packages suggested but not available for checking:
  'readxl', 'ggrepel', 'ggpubr', 'igraph', 'ggraph', 'ape',
  'topicmodels', 'corrr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'udpipe', 'BTM', 'igraph', 'qgraph', 'ggplot2', 'ggraph', 'ggforce',
  'concaveman', 'ggrepel', 'ggalt', 'uwot'
Packages required but not available: 'igraph', 'digest'

Packages suggested but not available for checking:
  'textreuse', 'rmarkdown', 'udpipe'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringi', 'tidyr', 'ggplot2', 'ggrepel', 'cowplot',
  'parsnip', 'recipes', 'rsample', 'reticulate', 'tune', 'workflows',
  'yardstick', 'future', 'furrr', 'overlapping'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'rio', 'glmnet', 'covr', 'xml2', 'ranger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'recipes', 'dplyr', 'tokenizers'

Packages suggested but not available for checking:
  'covr', 'dials', 'janitor', 'modeldata', 'rmarkdown',
  'sentencepiece', 'spacyr', 'stringi', 'testthat', 'text2vec',
  'tokenizers.bpe', 'udpipe', 'wordpiece'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tm', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'plyr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'dplyr', 'Rcpp', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringi’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘systemfonts’

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'hunspell', 'lexicon', 'quanteda', 'stringi', 'textclean',
  'textshape'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘qvalue’

Packages suggested but not available for checking:
  'BiocStyle', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'tensorflow', 'keras'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

Packages suggested but not available for checking: 'tensorflow', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'tensorflow'

Packages suggested but not available for checking:
  'testthat', 'keras', 'rsample', 'rmarkdown', 'dplyr', 'tfestimators'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'httpuv', 'reticulate', 'tensorflow'

Packages suggested but not available for checking:
  'cloudml', 'pixels', 'testthat', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reticulate', 'tensorflow', 'tfruns', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'modelr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'fs', 'digest'

Packages suggested but not available for checking:
  'testthat', 'tidyr', 'reticulate', 'rmarkdown', 'ggplot2',
  'tensorflow', 'wav'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'reticulate', 'tensorflow'

Packages suggested but not available for checking:
  'testthat', 'tfestimators', 'keras', 'rmarkdown', 'recipes', 'fs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reticulate', 'tensorflow', 'tfdatasets'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tensorflow', 'keras', 'reticulate'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tensorflow', 'reticulate', 'keras'

Packages suggested but not available for checking:
  'tfdatasets', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Objects in \usage without \alias in Rd file 'timeSeries.Rd':
  ‘tbind.timeSeries’

Objects in \usage without \alias in Rd file 'tis.Rd':
  ‘tfstart.tis’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Packages required but not available: 'Rcpp', 'RcppParallel', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tfrmt', 'shiny', 'shinyjs', 'dplyr', 'tidyr', 'stringr', 'DT', 'gt',
  'sortable', 'bslib', 'shinyWidgets', 'rio', 'shinycssloaders',
  'webshot2', 'shinyAce', 'shinyFeedback', 'fontawesome'

Packages suggested but not available for checking:
  'pkgload', 'shinytest2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'stringi', 'tidyr', 'gt', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown', 'patchwork', 'ggfortify'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda.usc', 'tclust', 'stringr', 'fda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'doFuture', 'dplyr', 'future', 'ggplot2', 'plyr', 'Rcpp',
  'RcppParallel', 'tgstat'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tgp.Rcheck/00install.out’ for details.
Packages required but not available: 'rjson', 'bnstruct', 'ggm', 'minet'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tgstat.Rcheck/00install.out’ for details.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plumber', 'geojsonsf'

Packages suggested but not available for checking:
  'igraph', 'covr', 'devtools', 'rmarkdown', 'testthat', 'edgebundle',
  'ggplot2', 'sf', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'rmarkdown'

Packages suggested but not available for checking:
  'testthat', 'bookdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘uniformly’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
checkRd: (-1) shoulders.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) shoulders.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) shoulders.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'trtf', 'tram', 'rms'
Note: skipping ‘blood_loss_report.Rnw’ due to unavailable dependencies:
  'trtf', 'tram', 'rms'
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'ggplot2', 'tidyr', 'reshape2', 'scales', 'broom',
  'tsibble', 'fabletools', 'tsfeatures', 'feasts', 'Rcatch22',
  'reticulate', 'Rtsne', 'e1071', 'janitor'

Packages suggested but not available for checking:
  'cachem', 'bslib', 'rmarkdown', 'pkgdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

Packages suggested but not available for checking: 'rmarkdown', 'gdalcubes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'farver', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'bslib', 'gganimate', 'ggiraph', 'htmltools', 'httpgd', 'ragg',
  'rmarkdown', 'shiny', 'svglite', 'systemfonts', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'recipes', 'dplyr', 'RANN'

Packages suggested but not available for checking:
  'covr', 'dials', 'ggplot2', 'modeldata', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reticulate', 'stringr', 'stringi', 'xml2'

Packages suggested but not available for checking:
  'readr', 'tidyr', 'dplyr', 'lubridate', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘fields’
Running examples in ‘Thermimage-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: diffFrame
> ### Title: A frame difference function for subtracting adjacent frames from
> ###   an imported thermal image sequence.
> ### Aliases: diffFrame
> 
> ### ** Examples
> 
> 
> # set w to 640 and h to 480
> w<-640
> h<-480
> f<-system.file("extdata", "SampleSEQ.seq", package = "Thermimage")
> x<-frameLocates(f, w=w, h=h)
> suppressWarnings(templookup<-raw2temp(1:65535))
> alldata<-unlist(lapply(x$f.start, getFrames, vidfile=f, w=w, h=h))
> alldata<-matrix(alldata, nrow=w*h, byrow=FALSE)
> alltemperature<-templookup[alldata]
> alltemperature<-unname(matrix(alltemperature, nrow=w*h, byrow=FALSE))
> 
> dalltemperature<-as.matrix(diffFrame(alltemperature, absolute=TRUE), nrow=w)
> 
> # Plot 
> plotTherm(dalltemperature[,1], templookup=NULL, w=w, h=h,  minrangeset=min(dalltemperature),
+           maxrangeset=max(dalltemperature), trans="mirror.matrix")
Error in loadNamespace(x) : there is no package called ‘fields’
Calls: plotTherm ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyverse', 'usethis', 'readr'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/thgenetics.Rcheck/00install.out’ for details.
Packages required but not available: 'forecast', 'hts', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'devtools', 'dplyr', 'ggplot2', 'lubridate', 'officer', 'rvg',
  'stringi', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages which this enhances but not available for checking:
  'IRkernel', 'plumber', 'shiny', 'targets', 'testthat'
Package required but not available: ‘lubridate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking: 'shiny', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘storr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Documented arguments not in \usage in Rd file 'poisson_likelihood.Rd':
  ‘rate_exp’ ‘rate_ref’ ‘rate_pla’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dipsaus', 'ravetools', 'xml2', 'servr', 'shiny', 'digest',
  'freesurferformats', 'stringr', 'htmlwidgets', 'gifti', 'oro.nifti'

Packages suggested but not available for checking:
  'rmarkdown', 'DT', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'igraph', 'htmlwidgets', 'crosstalk'

Package which this enhances but not available for checking: ‘shiny’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'readxl', 'readr', 'janitor', 'tidyr', 'anytime'

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown', 'ggplot2', 'scales', 'stringi',
  'ggrepel', 'fixerapi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) CPdimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) CPdimensionalityplot.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) T2func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T2funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3dimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:26: Escaped LaTeX specials: \& \& \&
checkRd: (-1) TV.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) pcamean.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) threewayanova.Rd:24: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'PCDimension', 'ade4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pROC', 'ks'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'InformativeCensoring', 'pROC', 'ThresholdROC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'revdbayes', 'rust'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringi’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'dplyr', 'RcppParallel', 'rstan', 'rstantools', 'tidyr',
  'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'MplusAutomation', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'DiagrammeR', 'dplyr', 'formattable', 'ggplot2', 'htmltools',
  'lubridate', 'pkgload', 'rmarkdown', 'stringi', 'testthat', 'tidyr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'lubridate', 'Rcpp'

Packages suggested but not available for checking:
  'broom', 'covr', 'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'memoise', 'rmarkdown', 'spelling', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tibblify.Rcheck/00install.out’ for details.
Packages suggested but not available for checking:
  'testthat', 'combiter', 'dplyr', 'tidyr', 'reshape2', 'ggplot2'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘fields’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'tidyr', 'slider', 'furrr', 'dbplyr'

Packages suggested but not available for checking:
  'lubridate', 'stringr', 'testthat', 'RSQLite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'parsnip', 'dplyr', 'rsample', 'workflows', 'workflowsets', 'tidyr',
  'broom'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'stringr', 'recipes', 'multilevelmod',
  'rules', 'poissonreg', 'censored', 'baguette', 'bonsai', 'brulee',
  'rstanarm', 'dbarts', 'kknn', 'ranger', 'LiblineaR', 'flexsurv',
  'glmnet', 'discrim', 'kernlab', 'klaR', 'sparsediscrim'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggdist', 'dplyr', 'tidyr', 'ggplot2', 'posterior'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'svglite', 'rstan', 'rstantools', 'runjags',
  'rjags', 'jagsUI', 'rstanarm', 'broom', 'dotwhisker', 'MCMCglmm',
  'bayesplot', 'modelr', 'brms', 'cowplot', 'covr', 'rmarkdown',
  'ggrepel', 'bindrcpp', 'gganimate', 'pkgdown', 'distributional',
  'transformr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'readr', 'scales', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'janitor', 'lubridate', 'scales', 'ggplot2',
  'strex', 'ClusterR', 'framecleaner', 'xgboost', 'badger'

Packages suggested but not available for checking:
  'rmarkdown', 'arulesCBA', 'embed', 'recipes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'modelr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'broom', 'ggplot2', 'ggforce', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cicerone', 'dplyr', 'DT', 'GGally', 'ggcorrplot', 'ggplot2',
  'golem', 'gt', 'haven', 'IDEAFilter', 'plotly', 'rmarkdown', 'shiny',
  'shinyjs', 'shinyWidgets', 'stringr', 'tidyr', 'timevis', 'tippy'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'dplyr', 'tigris', 'stringr', 'rvest', 'tidyr', 'readr',
  'xml2', 'units'

Packages suggested but not available for checking:
  'ggplot2', 'survey', 'srvyr', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'magick', 'testthat', 'htmlwidgets', 'lubridate', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'tidyverse', 'dplyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dials', 'dplyr', 'parsnip', 'Rfast', 'rsample', 'tidyr', 'tune'

Packages suggested but not available for checking:
  'ClusterR', 'clustMixType', 'covr', 'klaR', 'modeldata',
  'RcppHungarian', 'recipes', 'rmarkdown', 'testthat', 'workflows'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'ggplot2', 'gtsummary', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggsurvfit', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pryr', 'matahari'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'dplyr', 'MBESS', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'Rcpp', 'RcppSpdlog', 'simplermarkdown'

VignetteBuilder package required for checking but not installed: ‘simplermarkdown’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'dplyr', 'visNetwork', 'htmlwidgets'

Packages suggested but not available for checking: 'rmarkdown', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dials', 'parsnip'

Packages suggested but not available for checking:
  'testthat', 'dann', 'recipes', 'modeldata', 'workflows', 'rsample',
  'dplyr', 'tune', 'scales', 'yardstick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'janitor', 'readxl', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'learnr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'plotly', 'tidyr', 'patchwork', 'nloptr', 'broom'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'EnvStats'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'explore', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggfun', 'ggplot2'

Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'EdSurvey', 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'emoji', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ggplot2', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggrepel', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'dplyr', 'spelling', 'testthat', 'tidyr'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyfast.Rcheck/00install.out’ for details.
Packages required but not available:
  'broom', 'dials', 'dplyr', 'furrr', 'progressr', 'rsample', 'tidyr',
  'yardstick'

Packages suggested but not available for checking:
  'arm', 'bestglm', 'BoomSpikeSlab', 'CORElearn', 'e1071', 'gaselect',
  'ggplot2', 'glmnet', 'hfr', 'kableExtra', 'lme4', 'lubridate',
  'monomvn', 'mRMRe', 'shrinkTVP', 'stringr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fst', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'pryr', 'tidyr', 'ggplot2', 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'fst'

Packages suggested but not available for checking:
  'rmarkdown', 'profvis', 'dplyr', 'dtplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'readxl', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'scales', 'dplyr', 'tidyr', 'viridis', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'fuzzyjoin', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'ggrepel', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xml2', 'anytime', 'dplyr', 'tidyRSS', 'strex', 'stringr', 'sf'

Packages suggested but not available for checking:
  'httptest', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'igraph', 'tidyr'

Packages suggested but not available for checking:
  'ape', 'covr', 'data.tree', 'influenceR', 'netrankr', 'NetSwan',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ComplexHeatmap', 'viridis', 'dendextend',
  'patchwork'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'vdiffr', 'rmarkdown', 'qpdf', 'covr',
  'roxygen2', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'SuperLearner'

Packages suggested but not available for checking:
  'covr', 'devtools', 'estimatr', 'ggplot2', 'glmnet', 'nprobust',
  'quickblock', 'rmarkdown', 'testthat', 'vimp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dbplyr', 'dplyr', 'lubridate', 'readr', 'RSQLite', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr', 'tsibble'

Packages suggested but not available for checking:
  'covr', 'lmomco', 'lubridate', 'rmarkdown', 'slider', 'SPEI',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'igraph', 'listviewer', 'lubridate', 'rmarkdown',
  'testthat', 'viridis', 'wordcloud'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'mvrsquared', 'Rcpp', 'stringr', 'tidyr', 'tidytext',
  'RcppArmadillo', 'RcppThread'

Packages suggested but not available for checking:
  'ggplot2', 'quanteda', 'testthat', 'tm', 'spelling', 'covr',
  'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'stringr', 'testthat', 'tidytext'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'MplusAutomation'

Packages suggested but not available for checking:
  'lme4', 'missForest', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'furrr', 'future', 'ggplot2', 'kableExtra', 'stringr',
  'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'conflicted', 'dials', 'dplyr', 'ggplot2', 'infer',
  'modeldata', 'parsnip', 'recipes', 'rsample', 'tidyr', 'tune',
  'workflows', 'workflowsets', 'yardstick'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'tidyr', 'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ncmeta', 'tidyr'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat', 'covr', 'cubelyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'scales', 'ggplot2', 'styler', 'ggstance', 'stringr',
  'tidyr', 'digest', 'rioja'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'patchwork', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'janitor', 'readr', 'readxl', 'tidyr', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringi', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'readr', 'sf', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xml2', 'tokenizers', 'stringr', 'dplyr', 'readr'

Packages suggested but not available for checking:
  'europepmc', 'tidytext', 'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'rsample', 'rstanarm', 'tidyr', 'tune',
  'workflowsets'

Packages suggested but not available for checking:
  'covr', 'parsnip', 'rmarkdown', 'testthat', 'yardstick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'Cubist', 'dbplyr', 'modeldata', 'parsnip', 'ranger',
  'rmarkdown', 'RSQLite', 'testthat', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lubridate', 'dplyr', 'ggplot2', 'readr', 'readxl', 'alphavantager',
  'stringr', 'tidyr', 'timetk', 'tidyverse'

Packages suggested but not available for checking:
  'tibbletime', 'broom', 'rmarkdown', 'testthat', 'scales', 'Rblpapi',
  'covr', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'lubridate', 'stringr'

Packages suggested but not available for checking:
  'covr', 'dbplyr', 'dtplyr', 'arrow', 'RSQLite', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'future', 'dplyr', 'xml2', 'stringr', 'tidyr', 'labelled', 'furrr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'janitor', 'REDCapR', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'redcapAPI', 'rmarkdown', 'skimr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'readr', 'reticulate', 'rgee', 'sf', 'stringr',
  'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'covr', 'readr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xml2', 'dplyr', 'anytime'

Packages suggested but not available for checking:
  'httptest', 'rmarkdown', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking:
  'AmesHousing', 'dplyr', 'C50', 'Cubist', 'modeldata', 'testthat',
  'rmarkdown', 'pander'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tidymodels', 'spatialsample', 'dials', 'DALEX', 'DALEXtra', 'dplyr',
  'ggplot2', 'lubridate', 'maxnet', 'parsnip', 'patchwork', 'recipes',
  'rsample', 'sf', 'terra', 'tune', 'workflows', 'workflowsets',
  'yardstick'

Packages suggested but not available for checking:
  'blockCV', 'kernlab', 'overlapping', 'pastclim', 'ranger',
  'rmarkdown', 'spelling', 'stacks', 'testthat', 'tidyterra',
  'xgboost', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'dplyr', 'rmarkdown', 'stringr', 'testthat'
Documented arguments not in \usage in Rd file 'vars_select.Rd':
  ‘args’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'OpenMx', 'ggplot2', 'blavaan', 'MplusAutomation', 'igraph',
  'dbscan', 'RANN', 'car', 'future.apply', 'progressr', 'nonnest2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'stringr', 'covr', 'tidyLPA',
  'umx', 'scales', 'dagitty'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ttservice', 'SeuratObject', 'Seurat', 'dplyr', 'tidyr', 'ggplot2',
  'plotly', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'GGally', 'SingleR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'MatchIt', 'spelling', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'Rcpp', 'testthat'

Packages suggested but not available for checking:
  'ape', 'bioseq', 'covr', 'seqinr', 'spelling', 'rmarkdown',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'stringr', 'readr'

Packages suggested but not available for checking:
  'BayesFactor', 'lme4', 'lmerTest', 'rmarkdown', 'Hmisc', 'afex',
  'testthat', 'MEMSS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'ggplot2', 'tidyr', 'kernlab', 'rgenoud', 'optimx'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'ggplot2', 'scales', 'sf', 'terra', 'tidyr'

Packages suggested but not available for checking:
  'isoband', 'maptiles', 'rmarkdown', 's2', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tokenizers'

Packages suggested but not available for checking:
  'broom', 'covr', 'ggplot2', 'hunspell', 'quanteda', 'readr',
  'reshape2', 'rmarkdown', 'scales', 'stm', 'testthat', 'textdata',
  'tidyr', 'tm', 'topicmodels', 'vdiffr', 'wordcloud'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'stringr', 'huxtable', 'usethis', 'readxl',
  'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'shiny', 'kableExtra', 'haven', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'sf', 'digest'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2', 'scales', 'lubridate', 'leaflet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidybayes', 'tidyr', 'dplyr', 'readr'

Packages suggested but not available for checking:
  'rmarkdown', 'BART', 'ggplot2', 'testthat'

Package which this enhances but not available for checking: ‘bartMachine’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'dplyr', 'tidyr', 'yulab.utils'

Packages suggested but not available for checking:
  'rmarkdown', 'prettydoc', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readxl', 'rvest', 'lubridate', 'readr', 'xml2', 'usethis'

Packages suggested but not available for checking:
  'testthat', 'covr', 'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'fuzzyjoin', 'ggplot2', 'sf', 'tigris'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'stringi', 'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom', 'conflicted', 'dbplyr', 'dplyr', 'dtplyr', 'ggplot2',
  'googledrive', 'googlesheets4', 'haven', 'lubridate', 'modelr',
  'ragg', 'readr', 'readxl', 'reprex', 'rvest', 'stringr', 'tidyr',
  'xml2'

Packages suggested but not available for checking:
  'covr', 'feather', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'classInt', 'ggplot2', 'fastDummies', 'egg'

Packages suggested but not available for checking:
  'dplyr', 'nlmixr2', 'shiny', 'vpc', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'WikidataR', 'stringr', 'RSQLite', 'usethis',
  'WikidataQueryServiceR', 'fs', 'pool'

Packages suggested but not available for checking:
  'spelling', 'roxygen2', 'testthat', 'rmarkdown', 'odbc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'piton'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'readxl', 'dplyr', 'tidyr', 'ggplot2',
  'openxlsx'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'openxlsx', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'abd', 'mosaic', 'ggplot2'

Packages suggested but not available for checking: 'shiny', 'shinyjs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'alakazam', 'dplyr', 'stringi', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rcbalance’

Package suggested but not available for checking: ‘rrelaxiv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RSQLite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'sf', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'ggthemes', 'leaflet', 'tidycensus'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Package required but not available: ‘filehash’

Packages suggested but not available for checking:
  'ggplot2', 'scales', 'stringr', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'nanotime', 'spdl', 'RcppInt64'

Packages suggested but not available for checking:
  'simplermarkdown', 'arrow'

VignetteBuilder package required for checking but not installed: ‘simplermarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'dplyr', 'tidyr', 'rmarkdown', 'leaflet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'igraph', 'lwgeom', 'sf', 'smoothr'

Packages suggested but not available for checking: 'dplyr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘raster’

Packages suggested but not available for checking:
  'leaflet', 'rmarkdown', 'sf', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'cowplot', 'tidyr', 'miniUI', 'shiny'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'memoise', 'tidygraph'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/timechange.Rcheck/00install.out’ for details.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'magick', 'pdftools'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'lubridate', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'collapse', 'cppdoubles', 'dplyr', 'ggplot2', 'lubridate', 'stringr',
  'timechange'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lava’

Package suggested but not available for checking: ‘mets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pec’

Package suggested but not available for checking: ‘timereg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pheatmap', 'reshape'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RPostgres’

Packages suggested but not available for checking:
  'openxlsx', 'dygraphs', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggfittext', 'ggplot2', 'lubridate', 'scales'

Packages suggested but not available for checking: 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'recipes', 'rsample', 'dplyr', 'ggplot2', 'stringr', 'plotly',
  'lubridate', 'padr', 'readr', 'stringi', 'tidyr', 'slider',
  'anytime', 'forecast', 'tsfeatures'

Packages suggested but not available for checking:
  'modeltime', 'glmnet', 'workflows', 'parsnip', 'tune', 'rmarkdown',
  'broom', 'scales', 'testthat', 'trelliscopejs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) POSIXst-class.Rd:247: Lost braces
   247 |   do any conversion on the POSIX{l,c}t objects).
       |                                 ^
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'htmltools', 'htmlwidgets', 'rmarkdown', 'shiny'

Packages suggested but not available for checking:
  'lubridate', 'testthat', 'shinydisconnect'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) alcohol.Rd:16-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) alcohol.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) alcohol.Rd:22-26: Lost braces in \itemize; meant \describe ?
Packages required but not available: 'fields', 'gplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'xml2', 'xslt'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'htmltools', 'rmarkdown'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'clusterProfiler', 'dplyr', 'stringr', 'pheatmap', 'ggplot2',
  'survminer', 'patchwork'

Packages suggested but not available for checking:
  'testthat', 'AnnoProbe', 'GEOquery', 'FactoMineR', 'factoextra',
  'rmarkdown', 'cowplot', 'ggpubr', 'ggplotify', 'tidyr', 'Rtsne',
  'ComplexHeatmap', 'org.Hs.eg.db', 'org.Rn.eg.db', 'org.Mm.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stringi'

Packages suggested but not available for checking:
  'rmarkdown', 'roxygen2', 'collapse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'dplyr', 'ggplot2', 'rmarkdown'
Running examples in ‘tinylabels-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: label_variable
> ### Title: Label Variables Using Pipes
> ### Aliases: label_variable label_variables
> 
> ### ** Examples
> 
>   library(dplyr)
Error in library(dplyr) : there is no package called ‘dplyr’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'ggplot2', 'gt', 'rvest', 'stringr', 'xml2'

Packages suggested but not available for checking: 'rmarkdown', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘magick’

Packages suggested but not available for checking:
  'ggplot2', 'ragg', 'svglite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'altdoc', 'ggplot2', 'htmltools', 'pandoc', 'rmarkdown',
  'tinysnapshot', 'webshot2'
Running ‘tinytest.R’ [1s/1s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   tinytest::test_package("tinytable")
  + }
  
  test-docx.R...................    0 tests    Error: Package tinysnapshot could not be loaded
  Execution halted
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘hrbrthemes’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘optimx’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'dplyr', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'RBesT', 'furrr', 'future'

Packages suggested but not available for checking:
  'rmarkdown', 'tidyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'htmltools', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'ggplot2', 'GGally', 'mniw'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'broom', 'dplyr'
Running examples in ‘tipr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: adjust_hr
> ### Title: Adjust an observed hazard ratio for a normally distributed
> ###   confounder
> ### Aliases: adjust_hr adjust_hr_with_continuous
> 
> ### ** Examples
> 
> adjust_hr(0.9, -0.9, 1.3)
Error in eval(call("force", as.symbol(paste0("..", x)))) : 
  argument "..8" is missing, with no default
Calls: adjust_hr ... glue_data -> lapply -> FUN -> %||% -> eval -> eval -> force
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'shiny', 'Rcpp', 'rstan', 'ggplot2', 'ggpubr', 'RcppEigen',
  'RcppParallel', 'StanHeaders'

Packages suggested but not available for checking:
  'rstantools', 'RcppParallel', 'sf', 'dplyr', 'leaflet', 'tmap',
  'spam', 'spdep', 'R.rsp', 'shinythemes', 'shinyFeedback',
  'shinybusy', 'shinyWidgets', 'shinyjs', 'bayesplot'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'ape', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'reshape', 'scales'

Package which this enhances but not available for checking: ‘ggplot2’
checkRd: (-1) tierChart.Rd:332: Lost braces
   332 |   If the input argument code{boxes} is \code{F}, the \code{lBox},
       |                             ^
Packages required but not available:
  'dplyr', 'ggplot2', 'cowplot', 'ggridges'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘dplyr’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ReDaMoR', 'dplyr', 'ClickHouseHTTP', 'visNetwork', 'shiny',
  'shinydashboard', 'DT', 'htmltools', 'readr', 'jsonvalidate',
  'promises', 'future', 'xml2'

Packages suggested but not available for checking:
  'rmarkdown', 'stringr', 'RClickhouse', 'data.tree', 'BED'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running examples in ‘tkImgR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tkImShow
> ### Title: Open and Display Image in a Tk Canvas
> ### Aliases: tkImShow
> 
> ### ** Examples
> 
> ## Don't show: 
> library(testthat)
Error in library(testthat) : there is no package called ‘testthat’
Execution halted
Found an obsolete/platform-specific call in the following function:
  ‘.my.tkdev’
Found the platform-specific device:
  ‘X11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'patchwork', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'huge', 'igraph'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tableone', 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'lmomco'

Packages suggested but not available for checking: 'Lmoments', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'tmaptools', 'sf', 'stars', 'units', 'classInt', 'htmltools',
  'htmlwidgets', 'widgetframe', 'leaflet', 'leafsync', 'leafem'

Packages suggested but not available for checking:
  'rmapshaper', 'rmarkdown', 'cartogram', 'osmdata', 'ggplot2',
  'dplyr', 'tidyr', 'shiny', 'testthat', 'covr', 'av', 's2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'lwgeom', 'stars', 'units'

Packages suggested but not available for checking:
  'tmap', 'rmapshaper', 'osmdata', 'OpenStreetMap', 'raster', 'shiny',
  'shinyjs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RcppEigen’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rstan', 'Rcpp', 'TMB', 'StanHeaders', 'RcppEigen', 'RcppParallel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘tm’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tmcn.Rcheck/00install.out’ for details.
Package required but not available: ‘stringi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'SuperLearner'

Packages suggested but not available for checking: 'dbarts', 'ROCR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'RcppAlgos', 'Rfast', 'magick', 'miscTools', 'phangorn', 'rgl',
  'ape', 'phytools', 'ROCR', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tagcloud', 'gplots', 'pheatmap', 'ggplot2', 'tidyr', 'ggrepel'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'dplyr', 'pander', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘tm’

Package suggested but not available for checking: ‘stringi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tm', 'xml2', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tm’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tm', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reshape2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'xml2'

Packages suggested but not available for checking:
  'filehash', 'pdftools', 'Rcampdf', 'Rpoppler', 'testthat',
  'tm.lexicon.GeneralInquirer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking:
  'roxygen2', 'prettydoc', 'testthat', 'rmarkdown', 'dexterMST'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'igraph', 'testthat'
'LazyData' is specified without a 'data' directory
Running examples in ‘TNC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tbc
> ### Title: Temporal betweenness centrality
> ### Aliases: tbc
> 
> ### ** Examples
> 
> # Create a list of adjacency matrices, plot the corresponding graphs
> # (using the igraph package) and calculate tbc
> 
> A1 <- matrix(c(0,1,0,0,0,0,
+                1,0,1,0,0,0,
+                0,1,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> A2 <- matrix(c(0,0,0,0,0,0,
+                0,0,1,0,0,0,
+                0,1,0,1,1,0,
+                0,0,1,0,0,0,
+                0,0,1,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> A3 <- matrix(c(0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> A4 <- matrix(c(0,1,0,0,0,0,
+                1,0,0,1,0,0,
+                0,0,0,0,0,0,
+                0,1,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> library(igraph)
Error in library(igraph) : there is no package called ‘igraph’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'partitions', 'plyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vcr', 'devtools'
Documented arguments not in \usage in Rd file 'TNRS_core.Rd':
  ‘...’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'htmlwidgets', 'htmltools', 'phosphoricons', 'shiny', 'shinyWidgets'

Packages suggested but not available for checking:
  'apexcharter', 'rmarkdown', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'lubridate', 'memoise'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'igraph', 'nloptr', 'Rmpfr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'stringi'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringi', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'hfhub'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'e1071', 'ggplot2', 'ggsci', 'reshape2', 'ggpubr', 'ggcorrplot',
  'ggforce', 'UpSetR', 'randomcoloR', 'ComplexHeatmap',
  'EnhancedVolcano', 'GGally', 'survminer', 'Rtsne', 'umap', 'dplyr',
  'tidyr', 'clusterProfiler', 'enrichplot', 'ggnewscale', 'igraph',
  'WGCNA', 'stringr', 'pheatmap', 'ggpolypath', 'factoextra',
  'ggrepel', 'cowplot', 'ggplotify', 'Mfuzz', 'shiny'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'sf', 'stringr', 'readr'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'geojsonsf', 'cancensus', 'tidycensus',
  'spelling', 'readxl', 'scales'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) jsonStr.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Format data as a JSON object (like this: {"x": "120"}).}
       |                                                 ^
checkRd: (-1) jsonStr.Rd:18: Lost braces; missing escapes or markup?
    18 | Format data as a JSON object (like this: {"x": "120"}).
       |                                          ^
Packages required but not available: 'plyr', 'dplyr', 'reshape2', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BiasedUrn', 'dplyr', 'glmnet', 'latticeExtra', 'lhs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘HardyWeinberg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'rmarkdown', 'pkgdown', 'pander', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'imager', 'ggplot2', 'cowplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘testthat’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyr', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'gt', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking: 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘topicmodels’

Packages suggested but not available for checking:
  'rmarkdown', 'stm', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘torch’

Packages suggested but not available for checking:
  'udpipe', 'word2vec', 'uwot', 'ggrepel', 'ggalt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tm’

Package suggested but not available for checking: ‘OAIHarvester’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RSpectra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'gplots'

Packages suggested but not available for checking:
  'RGtk2', 'gWidgets2', 'gWidgets2RGtk2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nloptr', 'ggplot2', 'reshape2'

Packages suggested but not available for checking: 'rmarkdown', 'gurobi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gdistance', 'plotly', 'raster', 'scales'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gRbase', 'qpgraph', 'fields', 'igraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Packages required but not available:
  'ggplot2', 'dplyr', 'stringr', 'scales', 'ggrepel', 'egg', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'torch', 'av', 'fs'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'stringr', 'scales', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'torch', 'fs', 'pins', 'torchvision', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'readr', 'tokenizers'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘torch’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'katex'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'torch'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'torch', 'fs'

Packages suggested but not available for checking: 'magick', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'testthat', 'caret', 'glmnet', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fs', 'readr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tm', 'quanteda', 'lubridate', 'htmltools', 'stringr'

Packages suggested but not available for checking:
  'toscaData', 'testthat', 'devtools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Package required but not available: ‘languageserver’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'hdi', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bibliometrix', 'igraph', 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'jmvcore', 'ggplot2', 'ggdist', 'distributional', 'cowplot', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'broom', 'car', 'afex', 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘TreeTools’

Packages suggested but not available for checking: 'ape', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'energy', 'testthat', 'ggplot2', 'rmarkdown', 'tidyr', 'covr',
  'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'regtools', 'rmarkdown', 'FNN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'DT', 'leaflet', 'ggplot2', 'shiny',
  'shinydashboard', 'readxl', 'shinyAce', 'shinycssloaders'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'tcpl', 'openxlsx', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pryr', 'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pROC’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pcalg’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'ks'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'MESS', 'igraph'

Package suggested but not available for checking: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘readxl’

Packages suggested but not available for checking: 'rmarkdown', 'openxlsx'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'haven', 'rmarkdown', 'huxtable', 'tidyverse', 'readr',
  'kableExtra', 'pharmaRTF'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'metR', 'rgl', 'e1071'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package which this enhances but not available for checking: ‘etm’
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tpr.Rcheck/00install.out’ for details.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'testthat', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'plyr', 'reshape', 'readxl', 'shiny', 'taxize'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'keras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'NMdata', 'ggplot2', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'ape', 'ggplot2', 'hunspell', 'phangorn', 'reshape2', 'rmarkdown',
  'spelling', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'adehabitatHR', 'dplyr', 'geosphere', 'ggplot2', 'lubridate',
  'Matching', 'move', 'raster', 'sf', 'tidyr'

Packages suggested but not available for checking:
  'adehabitatLT', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'raster', 'Rcpp', 'shiny', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'lubridate', 'dplyr'

Packages suggested but not available for checking:
  'readr', 'ggplot2', 'rmarkdown', 'adehabitatLT', 'move', 'ctmm',
  'moveHMM', 'terra', 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'googledrive', 'rmarkdown'

Packages suggested but not available for checking:
  'covr', 'devtools', 'gargle', 'pagedown', 'testthat', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'trackeR', 'plotly', 'DT', 'shiny', 'shinyjs', 'shinydashboard',
  'shinyWidgets', 'sf', 'mapdeck', 'V8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'ggridges', 'xml2', 'RSQLite', 'raster', 'fda', 'leaflet',
  'ggmap'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RNifti’

Packages suggested but not available for checking:
  'mmand', 'divest', 'testthat'

Package which this enhances but not available for checking: ‘oro.nifti’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'competitiontoolbox', 'rmarkdown', 'bookdown'
checkRd: (-1) Sim-Functions.Rd:99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:100-102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:108: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:109-110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:111-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:114-116: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘dplR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'crul', 'digest', 'memoise'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reticulate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'DescriptiveStats.OBeu', 'dplyr', 'lubridate'

Packages suggested but not available for checking: 'devtools', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FNN', 'pryr'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xgboost', 'e1071', 'kknn', 'dplyr', 'stringr', 'adabag', 'glmnet',
  'ROCR', 'gbm', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'tidyr', 'usethis', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geosphere’

Packages suggested but not available for checking:
  'covr', 'testthat', 'dplyr', 'tidyr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'crul', 'readr', 'taxize', 'xml2', 'rvest', 'hoardr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'dplyr', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'e1071', 'ggplot2', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'FD', 'TPD'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spacetime’

Packages suggested but not available for checking:
  'OpenStreetMap', 'rjson', 'adehabitatLT', 'rgl', 'forecast',
  'spatstat', 'spatstat.explore', 'spatstat.geom', 'taxidata', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'readr', 'covr'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'tram', 'mlt', 'cotram', 'dHSIC', 'ranger'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘TraMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘TraMineRextras’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TraMineR.Rcheck/00install.out’ for details.
Packages required but not available:
  'tram', 'mlt', 'lme4', 'TMB', 'coneproj', 'RcppEigen'

Packages suggested but not available for checking: 'gamm4', 'glmmTMB'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tram', 'CVXR', 'mlrMBO', 'mlt', 'lhs', 'mlr', 'smoof'

Packages suggested but not available for checking:
  'penalized', 'glmnet', 'trtf', 'kableExtra', 'tbm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fastmap’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘mlt’

Packages suggested but not available for checking:
  'trtf', 'lme4', 'merDeriv', 'latticeExtra', 'mlt.docreg', 'asht'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tram', 'cotram'

Packages suggested but not available for checking:
  'abess', 'tramnet', 'mlt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reticulate', 'googledrive', 'LSAfun', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'timereg', 'rmarkdown'
Running examples in ‘transform.hazards-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pluginEstimate
> ### Title: SDE plugin estimator solver
> ### Aliases: pluginEstimate
> 
> ### ** Examples
> 
> ###############################################################
> #########################  Survival  ##########################
> ###############################################################
> library(timereg)
Error in library(timereg) : there is no package called ‘timereg’
Execution halted
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'tweenr', 'sf'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stars', 'sf', 'units'

Packages suggested but not available for checking: 'rmarkdown', 'elevatr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Tlasso', 'HeteroGGM', 'dcov', 'huge'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
checkRd: (-1) trans.Rd:46: Lost braces; missing escapes or markup?
    46 | "Found {trans("file", .n = n_files)} in {trans("directory", .n = n_dirs)}".
       |        ^
checkRd: (-1) trans.Rd:46: Lost braces; missing escapes or markup?
    46 | "Found {trans("file", .n = n_files)} in {trans("directory", .n = n_dirs)}".
       |                                         ^
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggformula', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ape'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'stringr', 'rmarkdown', 'testthat', 'spelling'
Running examples in ‘transplantr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: chi2dob
> ### Title: Convert CHI number to date of birth
> ### Aliases: chi2dob
> 
> ### ** Examples
> 
> # as a single numeric
> chi2dob(1503541234)
Error: The stringr package is needed for this function to work. Please install it.
Execution halted
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'tidyverse', 'cowplot', 'dplyr', 'ggplot2', 'ggarchery',
  'geomtextpath'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'animation', 'ks', 'testthat', 'WSGeometry'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'starnet', 'joinet'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

Packages which this enhances but not available for checking:
  'glmtrans', 'xrnet', 'ecpc', 'fwelnet', 'palasso', 'devtools', 'CVXR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Tlasso’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘truncSP’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'testthat', 'DescTools', 'rmarkdown', 'covr'
'LazyData' is specified without a 'data' directory
Running examples in ‘transx-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: filter_hamilton
> ### Title: Hamilton Filter
> ### Aliases: filter_hamilton
> 
> ### ** Examples
> 
> unemp <- ggplot2::economics$unemploy
Error in loadNamespace(x) : there is no package called ‘ggplot2’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'ggplot2', 'plyr'
Error(s) in re-building vignettes:
  ...
--- re-building ‘trapezoid.Rnw’ using Sweave
Loading required package: trapezoid
Loading required package: plyr
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘plyr’
Loading required package: ggplot2
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘ggplot2’

Error: processing vignette 'trapezoid.Rnw' failed with diagnostics:
 chunk 2 (label = trapezoid) 
Error in ggplot(data = data.frame(x, density), aes(x = x, y = density)) : 
  could not find function "ggplot"

--- failed re-building ‘trapezoid.Rnw’

SUMMARY: processing the following file failed:
  ‘trapezoid.Rnw’

Error: Vignette re-building failed.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'terra', 'sf', 'elevatr', 'fs'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘RProtoBuf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggpubr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'stringi', 'rjson', 'Andromeda', 'tidyr',
  'sunburstR', 'networkD3', 'htmlwidgets', 'shiny', 'shinydashboard'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'usethis', 'Eunomia', 'CDMConnector',
  'DatabaseConnector', 'CohortGenerator', 'webshot2', 'CirceR',
  'duckdb', 'plotly', 'ggplot2', 'Capr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'dispRity', 'rgl'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rayvertex’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'memoise', 'gmp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ape’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'runjags', 'rjags', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'plyr', 'ggplot2', 'np', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reshape2', 'phyloseq', 'ggplot2', 'ape'

Packages suggested but not available for checking:
  'adaptiveGPCA', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'geiger'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ape’

Packages suggested but not available for checking:
  'lubridate', 'ggplot2', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lubridate', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ape', 'cowplot', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'adjclust', 'csaw', 'dplyr', 'InteractionSet', 'reshape2',
  'testthat', 'HiCDOC'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mlpack', 'igraph', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'memoise', 'phangorn', 'shiny', 'shinyjs', 'TreeTools', 'Rcpp'

Packages suggested but not available for checking:
  'bookdown', 'ggplot2', 'hypervolume', 'kdensity', 'plotly',
  'Quartet', 'readxl', 'rmarkdown', 'Rcpp', 'rgl', 'Rogue', 'spelling',
  'testthat', 'Ternary', 'TreeDistData', 'TreeSearch', 'Umatrix',
  'uwot', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'igraph', 'patchwork'

Packages suggested but not available for checking:
  'Seurat', 'plotly', 'qpdf', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggparty', 'ggplot2', 'dplyr', 'ggnewscale', 'tidyr', 'yardstick'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ranger', 'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggfittext'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'igraph', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'AmesHousing', 'gbm', 'glmnet', 'ranger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ape', 'RcppArmadillo', 'RcppThread'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'pkgload', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ape', 'fs', 'future', 'promises', 'Rcpp', 'Rogue', 'shiny',
  'shinyjs', 'TreeDist', 'TreeTools'

Packages suggested but not available for checking:
  'phangorn', 'Quartet', 'readxl', 'rmarkdown', 'shinytest',
  'spelling', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking:
  'gbm', 'lightgbm', 'ranger', 'scales', 'testthat', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'TreeSim', 'ape'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'geiger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'ggplot2', 'sf'

Packages suggested but not available for checking:
  'devtools', 'ggpubr', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ape', 'ade4', 'adegenet', 'adegraphics', 'distory', 'fields',
  'htmlwidgets', 'phangorn', 'phytools', 'Rcpp', 'rgl', 'RLumShiny',
  'scatterD3', 'shiny', 'shinyBS'

Packages suggested but not available for checking:
  'ggplot2', 'igraph', 'pander', 'reshape2', 'rmarkdown', 'sf',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'phytools', 'ape'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'ape', 'nloptr', 'RSpectra'

Packages suggested but not available for checking:
  'phyloTop', 'testthat', 'DDD', 'geiger', 'nodeSub', 'nLTT', 'castor',
  'adephylo', 'ggplot2', 'picante', 'treebalance', 'RPANDA', 'lintr',
  'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'Rcpp'

Packages suggested but not available for checking: 'ggtree', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'R.cache', 'Rcpp'

Packages suggested but not available for checking:
  'spelling', 'phangorn', 'Rcpp', 'rmarkdown', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'htmltools', 'digest', 'ggplot2', 'htmlwidgets', 'autocogs',
  'tidyr'

Packages suggested but not available for checking:
  'plotly', 'testthat', 'covr', 'rmarkdown', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘crul’

Packages suggested but not available for checking:
  'testthat', 'vcr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'trending', 'yardstick', 'rsample'

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ciTools’

Packages suggested but not available for checking:
  'brms', 'RcppEigen', 'rmarkdown', 'dplyr', 'testthat', 'ggplot2',
  'patchwork', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pROC', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘extraDistr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'plyr', 'Rssa', 'imputeTS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘usethis’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gtrendsR', 'dplyr', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ManifoldOptim’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tlars', 'doRNG', 'glmnet'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'patchwork', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'broom', 'parglm', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'dplyr', 'stringr', 'ggplot2',
  'tidybayes', 'StanHeaders', 'RcppEigen', 'RcppParallel'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'tidyr', 'ggridges', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TrialSize.Rcheck/00install.out’ for details.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Skipping checking math rendering: package 'V8' unavailable
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/triangulr.Rcheck/00install.out’ for details.
Packages required but not available:
  'Rcpp', 'rstan', 'dplyr', 'future', 'tidyr', 'bayesplot',
  'RcppEigen', 'RcppParallel', 'StanHeaders'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'caret', 'dplyr', 'DT', 'factoextra', 'ggcorrplot', 'ggplot2',
  'ggpubr', 'ggridges', 'patchwork', 'readxl', 'shiny',
  'shinydashboardPlus', 'shinydashboard', 'shinyWidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales', 'reshape2', 'ez'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘fpc’
Package required but not available: ‘pryr’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'rgl'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'reshape'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TrioSGL.Rcheck/00install.out’ for details.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'reshape2', 'plyr'

Packages suggested but not available for checking: 'lme4', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rcbalance', 'rlemon', 'optmatch'

Packages suggested but not available for checking:
  'rrelaxiv', 'testthat', 'gurobi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'DALEX', 'glmnet', 'ggdendro', 'patchwork'

Packages suggested but not available for checking:
  'testthat', 'ranger', 'gbm', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'raster', 'spatstat.geom', 'spatstat.explore', 'viridis', 'traipse',
  'dplyr'

Packages suggested but not available for checking:
  'adehabitatLT', 'testthat', 'covr', 'rmarkdown', 'lubridate',
  'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ggplot2', 'patchwork', 'pROC', 'tidyr', 'dplyr', 'scales',
  'geomtextpath', 'ggrepel'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘data.tree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'spelling', 'rmarkdown', 'viridis', 'ggplot2', 'tidyr',
  'stringr', 'readstata13', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Package required but not available: ‘lme4’

Packages suggested but not available for checking: 'ggplot2', 'minqa'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘terra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mlt', 'tram'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘hdrcde’

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rfast', 'fpc'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survPen’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > testthat::test_check("TruncExpFam")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'RcppEigen',
  'StanHeaders'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Package required but not available: ‘maxLik’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘truncreg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘log2console’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘forecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘hdm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) summary.armasubsets.Rd:16: Lost braces
    16 | \item{matrix.logical}{With matrix=TRUE, the matrix is logical TRUE/FALSE or string "*"/code{" "}}
       |                                                                                            ^
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘anytime’

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'tidyr', 'forecast', 'dygraphs', 'ggplot2',
  'scales', 'rmarkdown', 'tsibble', 'tsibbledata', 'tibbletime',
  'units', 'imputeTS', 'spelling', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ICtest', 'JADE', 'BSSprep', 'Rcpp', 'forecast', 'RcppArmadillo'

Packages suggested but not available for checking:
  'stochvol', 'MTS', 'tsbox'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xgboost', 'Rfast', 'ranger', 'fastDummies'

Packages suggested but not available for checking: 'fda', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'longitudinalData', 'forecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rvinecopulib', 'kdensity'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘surveillance’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'ggplot2', 'rgl'

Packages suggested but not available for checking: 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'keras', 'tensorflow', 'reticulate', 'tsutils'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'latex2exp', 'Rcpp', 'RcppEigen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) disaggregate.Rd:56: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'longitudinalData', 'TSclust'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) binary_transform.Rd:16: Lost braces; missing escapes or markup?
    16 | Converts any variable with two possible values to a {0,1} binary
       |                                                     ^
checkRd: (-1) binary_transform.Rd:13: Lost braces; missing escapes or markup?
    13 | A vector with values in {0,1}.
       |                         ^
Package required but not available: ‘forecast’

Packages suggested but not available for checking:
  'rgl', 'tidyverse', 'rugarch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'RcppRoll', 'ranger', 'glmnet', 'kernlab', 'Cubist', 'gbm', 'monmlp',
  'xgboost'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'reshape2', 'wordcloud', 'ggplot2', 'syuzhet', 'tidytext', 'dplyr',
  'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'cubature', 'ks'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'lbfgsb3c', 'rugarch'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'forecast', 'RcppRoll', 'future', 'furrr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2', 'tidyr', 'dplyr', 'Mcomp',
  'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘forecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'edgeR', 'kernlab', 'e1071'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tsibble’

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'anytime', 'dplyr', 'lubridate'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'nanotime', 'rmarkdown', 'scales', 'spelling',
  'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'crosstalk', 'dendextend', 'dplyr', 'lubridate', 'plotly', 'shiny',
  'tsibble'

Packages suggested but not available for checking: 'fabletools', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MAPA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'kernlab', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'keras', 'tensorflow', 'tsutils'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'keras', 'tensorflow', 'tsutils'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tensorflow', 'keras', 'reticulate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppParallel', 'RJSONIO'

Packages suggested but not available for checking:
  'covr', 'gdtools', 'rmarkdown', 'raster', 'spelling', 'testthat',
  'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘networkDynamic’

Packages suggested but not available for checking:
  'networkDynamicData', 'testthat', 'rmarkdown', 'ergm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘forecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘test-all.R’ [0s/1s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'fpc', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'glmnet', 'smotefamily', 'FSelector', 'forecast',
  'DescTools', 'doBy', 'daltoolbox'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'forecast', 'EMD', 'ModelMetrics', 'RSNNS', 'Rlibeemd', 'e1071',
  'elmNNRcpp', 'plyr', 'dplyr', 'keras', 'tfdatasets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'glmnet', 'textTinyR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘forecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dsa', 'tsbox'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bfast', 'broom', 'ggplot2', 'RcppRoll'

Packages suggested but not available for checking: 'rgl', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'forecast', 'forecastHybrid', 'lubridate', 'plotly',
  'reshape2', 'scales', 'tidyr', 'tsibble', 'viridis'

Packages suggested but not available for checking:
  'devtools', 'DT', 'rmarkdown', 'UKgrid'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'forecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'openxlsx', 'reshape2', 'rmarkdown', 'testthat'
Packages required but not available: 'forecast', 'MAPA'

Package suggested but not available for checking: ‘thief’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘AER’
Running examples in ‘TSVC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: TSVC
> ### Title: Tree-Structured Modelling of Varying Coefficients
> ### Aliases: TSVC print.TSVC
> 
> ### ** Examples
> 
> # Swiss Labour Market 
> library(AER)
Error in library(AER) : there is no package called ‘AER’
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'lubridate', 'plotly', 'shiny', 'miniUI', 'forecast',
  'ggplot2', 'shinyhelper'

Packages suggested but not available for checking: 'testthat', 'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Errors in running code in vignettes:
when running code in ‘tsvrvignette.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘tsvrvignette.Rmd’ using ‘UTF-8’... failed to complete the test
Packages required but not available:
  'PolynomF', 'tidyverse', 'dplyr', 'ggplot2', 'nnfor', 'forecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tsxtreme.Rcheck/00install.out’ for details.
Packages required but not available: 'reshape', 'e1071', 'stlplus', 'wql'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'spatstat', 'spatstat.geom', 'spatstat.explore', 'spatstat.model',
  'spatstat.random', 'spatstat.linnet', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RISmed’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘latticeExtra’

Packages suggested but not available for checking: 'rmarkdown', 'bookdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'dplyr', 'data.tree', 'htmlwidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘sva’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘htmltools’

Packages suggested but not available for checking: 'rmarkdown', 'table1'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'xml2'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'plyr', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'xml2', 'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'raster', 'readr', 'tidyr', 'stringr', 'sf', 'dplyr', 'gstat',
  'lubridate', 'ggplot2'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'rmarkdown'

Packages suggested but not available for checking: 'covr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking: 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘doBy’

Packages suggested but not available for checking: 'pbkrtest', 'lme4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rgl', 'ddalpha', 'bfp', 'Rglpk', 'Rcpp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pbkrtest', 'lme4'

Packages suggested but not available for checking: 'reshape2', 'CorrBin'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'igraph', 'e1071', 'klaR'
Running examples in ‘TunePareto-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: predict.TuneParetoModel
> ### Title: Prediction method for TuneParetoClassifier objects
> ### Aliases: predict.TuneParetoModel
> ### Keywords: prediction
> 
> ### ** Examples
> 
> # train an SVM classifier
> cl <- tunePareto.svm()
Loading required package: e1071
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘e1071’
> tr <- trainTuneParetoClassifier(cl, 
+                                 iris[,-ncol(iris)], 
+                                 iris[,ncol(iris)], 
+                                 cost=0.001)
Error in svm(x = list(Sepal.Length = c(5.1, 4.9, 4.7, 4.6, 5, 5.4, 4.6,  : 
  could not find function "svm"
Calls: trainTuneParetoClassifier -> do.call
Execution halted
Packages required but not available:
  'ranger', 'mlrMBO', 'lubridate', 'lhs', 'mlr', 'smoof'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dials', 'dplyr', 'ggplot2', 'GPfit', 'parsnip', 'recipes',
  'rsample', 'tidyr', 'workflows', 'yardstick'

Packages suggested but not available for checking:
  'C50', 'covr', 'kernlab', 'kknn', 'modeldata', 'spelling',
  'testthat', 'xgboost', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'ggplot2', 'ggparliament', 'stringr', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'roxygen2', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Package vignette with \VignetteEngine{} not specifying an engine package:
  ‘turner_introduction.Rnw’
Engines should be specified as \VignetteEngine{PKG::ENG}.
Package suggested but not available for checking: ‘digest’
Packages required but not available: 'tidyverse', 'forecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'learnr', 'parsermd', 'readr', 'rmarkdown', 'shiny',
  'stringr'

Packages suggested but not available for checking:
  'roxygen2', 'rsconnect', 'rvest', 'testthat', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages suggested but not available for checking:
  'ggthemes', 'ggplot2', 'dplyr', 'tidyr', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'DescToolsAddIns'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'scales'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'lubridate', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'systemfit', 'bvarsv', 'plm'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'scales', 'magick'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'cowplot', 'stringr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'gbm', 'survey'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'twang', 'gbm', 'latticeExtra', 'survey'

Package suggested but not available for checking: ‘xgboost’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gbm', 'survey', 'latticeExtra', 'ggplot2', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xgboost', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) tweedie-internal.Rd:74: Lost braces
    74 | 	doi{10.1093/biomet/74.2.221}
       |            ^
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘farver’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘V8’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
'LazyData' is specified without a 'data' directory
Package required but not available: ‘lubridate’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plyr', 'stringr', 'dplyr', 'readr', 'quanteda',
  'quanteda.textstats', 'topicmodels', 'stm', 'tidyr', 'LDAvis',
  'leaflet', 'ldatuning', 'stringi', 'tm'

Packages suggested but not available for checking:
  'rmarkdown', 'tidytext', 'servr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'ggplot2', 'tidyr'
Packages required but not available:
  'dplyr', 'lubridate', 'plyr', 'twitteR', 'naptime', 'tidytext'

Packages suggested but not available for checking: 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rjson’

Package suggested but not available for checking: ‘RSQLite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'MCMCpack', 'Rfast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'tidyr', 'readr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/twosamples.Rcheck/00install.out’ for details.
Package required but not available: ‘glmmTMB’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) threshold_estimate_ir.Rd:30: Lost braces; missing escapes or markup?
    30 | \item{threshold_estimate_explanatory}{Point estimate of d_{0}}
       |                                                           ^
checkRd: (-1) threshold_estimate_ir.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{threshold_estimate_response}{Estimate of f(d_{0}), which may not be 
       |                                                    ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'fixest', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) twoway.Rd:66: Lost braces
    66 | code{\link{twoway.formula}}, code{\link[stats]{medpolish}}
       |     ^
checkRd: (-1) twoway.Rd:66: Lost braces
    66 | code{\link{twoway.formula}}, code{\link[stats]{medpolish}}
       |                                  ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'onewaytests', 'ggplot2', 'car'

Package suggested but not available for checking: ‘WRS2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'hal9001', 'haldensify', 'ggplot2', 'scales', 'latex2exp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'future', 'future.apply', 'origami',
  'ranger'

Package which this enhances but not available for checking: ‘sl3’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library (testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'covr', 'testthat'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tzdb.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘rmarkdown’
checkRd: (-1) cambodia.Rd:47: Lost braces
    47 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
checkRd: (-1) microdata.Rd:33: Lost braces
    33 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
checkRd: (-1) u5mr_cohort.Rd:111: Lost braces
   111 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘V8’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'geosphere', 'exifr', 'link2GI'

Packages suggested but not available for checking:
  'rmarkdown', 'mapview', 'stringr', 'htmltools', 'htmlwidgets',
  'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DirichletReg', 'GA', 'ggplot2', 'hyper2', 'mRMRe', 'Rdimtools',
  'shiny'

Packages suggested but not available for checking:
  'caret', 'dplyr', 'DT', 'glmnet', 'GSelection', 'plyr', 'rmarkdown',
  'shinyalert', 'shinyBS', 'shinyjs', 'shinyWidgets', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Lp.Rd:35-39: Lost braces
    35 | Lp<- function(a, data, sgl){
       |                            ^
checkRd: (-1) Lp.Rd:38: Lost braces
    38 | sapply(a,FUN=function(a){prod((psip(sgl,a)^ndlt)*((1-psip(sgl,a))^(npt-ndlt)))})
       |                         ^
checkRd: (-1) Lp.Rd:42-46: Lost braces
    42 | Lt<- function(a, data, sgl){
       |                            ^
checkRd: (-1) Lp.Rd:45: Lost braces
    45 | sapply(a,FUN=function(a){prod((psit(sgl,a)^ndlt)*((1-psit(sgl,a))^(npt-ndlt)))})
       |                         ^
checkRd: (-1) Lp.Rd:49-53: Lost braces
    49 | Ll<- function(a, data, sgl){
       |                            ^
checkRd: (-1) Lp.Rd:52: Lost braces
    52 | sapply(a,FUN=function(a){prod((psil(sgl,a)^ndlt)*((1-psil(sgl,a))^(npt-ndlt)))})
       |                         ^
Packages required but not available:
  'dplyr', 'digest', 'flextable', 'ggplot2', 'onbrand', 'optimx',
  'PKNCA', 'readxl', 'rmarkdown', 'rhandsontable', 'scales', 'stringr',
  'shiny'

Packages suggested but not available for checking:
  'GA', 'GGally', 'officer', 'ggrepel', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'MBA', 'gstat', 'automap'

Packages suggested but not available for checking:
  'testthat', 'DMwR2', 'ggplot2', 'e1071'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'unmarked', 'ggplot2', 'lme4', 'Rcpp', 'RSpectra', 'rstan',
  'rstantools', 'RcppArmadillo', 'RcppEigen', 'StanHeaders',
  'RcppParallel'

Packages suggested but not available for checking:
  'covr', 'devtools', 'pkgdown', 'raster', 'rmarkdown', 'roxygen2',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'geometry', 'ptinpoly', 'rgl'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cppRouting', 'furrr', 'future', 'fields', 'sf', 'spdep'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dendextend’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Rcpp', 'ggplot2', 'tsibble', 'tsoutliers', 'ggforce',
  'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ezcox', 'ggplot2', 'ggpubr', 'shiny', 'stringr', 'tidyr',
  'UCSCXenaTools'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'DT', 'furrr', 'future', 'ggrepel', 'ggstatsplot',
  'plotly', 'plyr', 'rmarkdown', 'scales', 'survminer', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'digest', 'dplyr', 'readr'

Packages suggested but not available for checking:
  'covr', 'DT', 'prettydoc', 'rmarkdown', 'shiny', 'shinydashboard',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'rmarkdown', 'topicmodels'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'esemifar', 'rugarch', 'smoots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'digest', 'dplyr', 'ggplot2', 'ggrepel', 'ggridges', 'htmltools',
  'kableExtra', 'pander', 'plyr', 'rmdpartials', 'scales', 'SuppDists'

Packages suggested but not available for checking:
  'car', 'GGally', 'jmvcore', 'MBESS', 'rio', 'rmarkdown', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘collapse’

Package suggested but not available for checking: ‘dygraphs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'testthat', 'rmarkdown'
checkRd: (-1) alt_gsmar.Rd:50: Lost braces; missing escapes or markup?
    50 |   In addition to the S3 methods listed under the topic "Methods (by generic)", the \code{predict} and {simulate} methods
       |                                                                                                       ^
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘maxLik’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rmarkdown', 'xaringan'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'dplyr', 'spelling'
Running examples in ‘ukbabynames-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ewbabynames
> ### Title: England & Wales baby names
> ### Aliases: ewbabynames
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'questionr', 'tidyverse', 'dplyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'roxygen2'
Packages required but not available:
  'dplyr', 'readr', 'ggplot2', 'tidyr', 'scales', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xml2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ggplot2', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'lubridate', 'tsibble'

Packages suggested but not available for checking:
  'devtools', 'rmarkdown', 'TSstudio', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘snakecase’

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'ggplot2', 'dplyr', 'leaflet',
  'htmltools', 'scales', 'sf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'tidyr', 'clusterSim'

Packages suggested but not available for checking:
  'rmarkdown', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'reticulate', 'Rcpp', 'RSpectra'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'shiny', 'shinyjs', 'reshape2', 'fields', 'plyr',
  'geometry', 'AdaptGauss', 'DataVisualizations'

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'DT', 'ggplot2', 'pheatmap', 'plotly', 'readr', 'Rsamtools',
  'scales', 'shiny', 'shinydashboard', 'shinyFiles', 'shinyWidgets',
  'stringr', 'tidyr', 'viridis'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘mc2d’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'OpenMx', 'cowplot', 'DiagrammeR', 'ggplot2', 'kableExtra', 'scales',
  'hrbrthemes', 'openxlsx', 'rmarkdown'

Packages suggested but not available for checking:
  'devtools', 'rhub', 'spelling', 'testthat'

Package which this enhances but not available for checking: ‘DiagrammeRsvg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘kohonen’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'spelling', 'covr', 'testthat'
Documented arguments not in \usage in Rd file 'sqrtm.Rd':
  ‘A’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'mvnfast', 'igraph', 'memoise', 'GGally', 'ggplot2', 'ggpubr',
  'scales', 'cachem', 'ggnewscale'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'Rcpp', 'devtools', 'usethis'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'MortalityLaws', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'scales', 'ggtext', 'ggrepel', 'systemfonts'

Packages suggested but not available for checking:
  'rmarkdown', 'ragg', 'tidyverse', 'treemapify', 'ggstream', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'stringr', 'tidyr', 'tidyxl', 'readxl'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘unikn’

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gmp’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'rstan'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'terrainr', 'covr', 'lintr', 'pkgdown', 'rmarkdown', 'styler',
  'testthat', 'terra', 'sf'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘rgl’

Packages suggested but not available for checking: 'geometry', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘systemfonts’

Packages suggested but not available for checking:
  'testthat', 'xml2', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking: 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'testthat', 'covr', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plyr', 'dplyr', 'scales', 'magick', 'data.tree', 'ggplot2',
  'tidyverse', 'ggpubr', 'networkD3', 'stringr', 'qdapRegex',
  'htmlwidgets', 'alakazam', 'gprofiler2', 'ggsci'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘DoseFinding’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘vroom’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'tidyverse', 'devtools', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  >  library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'lubridate', 'dplyr', 'tidyr', 'scales', 'ggplot2', 'ghql',
  'reticulate', 'patchwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'Rcpp', 'optimx'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking:
  'xml2', 'dplyr', 'ggplot2', 'testthat', 'vdiffr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘extraDistr’

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'copula', 'dplyr', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘e1071’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'tidyr', 'testthat', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'lme4', 'Rcpp', 'TMB', 'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'rmarkdown', 'raster', 'shiny', 'testthat', 'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjags', 'janitor'

Packages suggested but not available for checking:
  'bayesplot', 'posterior', 'ggplot2', 'dplyr', 'tidyr', 'rmarkdown',
  'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'roxygen2', 'testthat', 'tidyr'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/unnest.Rcheck/00install.out’ for details.
Package required but not available: ‘huge’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'rmarkdown', 'readr', 'tidyxl', 'readxl', 'stringr', 'htmltools',
  'rvest', 'selectr', 'DT', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'lubridate', 'stringr', 'tidyr', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘partitions’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggnormalviolin', 'ggplot2', 'tidyr'

Packages suggested but not available for checking:
  'bookdown', 'covr', 'kableExtra', 'patchwork', 'ragg', 'rmarkdown',
  'roxygen2', 'scales', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'readxl', 'tidyr', 'lubridate', 'devtools', 'rmarkdown',
  'ggplot2'
Running examples in ‘unvotes-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: un_roll_calls
> ### Title: Data on each roll call of the United Nations General Assembly
> ### Aliases: un_roll_calls
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> library(dplyr)
Error in library(dplyr) : there is no package called ‘dplyr’
Execution halted
Packages required but not available: 'forecast', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'cubature', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'RcppArmadillo', 'ggplot2', 'reshape2', 'future', 'doFuture',
  'doRNG'

Packages suggested but not available for checking:
  'covr', 'testthat', 'SuppDists', 'rmarkdown', 'VariantAnnotation'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mixtools', 'dplyr', 'ggplot2', 'reshape2', 'shiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'pgdraw', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RSQLite', 'dimRed'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'crosstalk', 'rmarkdown', 'testthat', 'styler', 'lintr', 'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rdacca.hp', 'ggplot2', 'patchwork'

Package suggested but not available for checking: ‘adespatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'readxl', 'readr', 'ggplot2', 'dplyr', 'openxlsx',
  'beepr', 'tidytext', 'scales', 'rmarkdown', 'textclean', 'sf',
  'tgamtheme'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘stringr’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rjson', 'plyr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'roxygen2', 'stringr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'sampleSelection', 'maxLik', 'mlogit', 'mvProbit'
Error(s) in re-building vignettes:
  ...
--- re-building ‘ExtendedAppendix.Rnw’ using knitr
--- finished re-building ‘ExtendedAppendix.Rnw’

--- re-building ‘Manuscript.Rnw’ using knitr

Quitting from lines 159-160 [dataLoad] (Manuscript.Rnw)
Error: processing vignette 'Manuscript.Rnw' failed with diagnostics:
there is no package called 'sampleSelection'
--- failed re-building ‘Manuscript.Rnw’

SUMMARY: processing the following file failed:
  ‘Manuscript.Rnw’

Error: Vignette re-building failed.
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘xml2’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'lubridate', 'shiny', 'miniUI'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'rmarkdown', 'httpuv', 'stringi', 'covr',
  'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'triebeard'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'raster', 'rmarkdown', 'fasterize', 'IRdisplay', 'caTools', 'shiny',
  'htmlwidgets', 'htmltools', 'leaflet', 'leafem', 'leafpop', 'ragg',
  'widgetframe', 'geojsonsf', 'leaflet.providers', 'magick', 'terra',
  'stars', 'vapour', 'gdalraster', 'RSQLite'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'spelling', 'sf', 'USA.state.boundaries.data', 'ggplot2'
Skipping vignette re-building
Package suggested but not available for checking: ‘R.rsp’

VignetteBuilder package required for checking but not installed: ‘R.rsp’
'LazyData' is specified without a 'data' directory
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'stringr', 'openxlsx', 'readxl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘readr’

Packages suggested but not available for checking:
  'rmarkdown', 'tidyverse', 'dplyr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'testthat'
Running examples in ‘usdata-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: county
> ### Title: United States Counties
> ### Aliases: county
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'terra', 'raster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'dplyr', 'tidyr'
'LazyData' is specified without a 'data' directory
Running examples in ‘usedist-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pivot_to_numeric_matrix
> ### Title: Convert a data frame in long format to a numeric matrix
> ### Aliases: pivot_to_numeric_matrix
> 
> ### ** Examples
> 
> longdata <- data.frame(
+   SampleID = paste0("Sample", c(1, 1, 1, 2, 2, 3, 3)),
+   FeatureID = paste0("Feature", c(1, 2, 3, 1, 2, 2, 3)),
+   Value = c(132, 41, 7, 56, 11, 929, 83))
> longdata
  SampleID FeatureID Value
1  Sample1  Feature1   132
2  Sample1  Feature2    41
3  Sample1  Feature3     7
4  Sample2  Feature1    56
5  Sample2  Feature2    11
6  Sample3  Feature2   929
7  Sample3  Feature3    83
> pivot_to_numeric_matrix(longdata, SampleID, FeatureID, Value)
Error: Packages "dplyr", "tidyr" are not installed, but are needed by "usedist::pivot_to_numeric_matrix".  Please install the missing packages to use this function.
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'conflicted', 'dplyr', 'kableExtra', 'readr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat', 'tsibble', 'rvest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr', 'dplyr', 'scales'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'covr', 'readr', 'mlr3misc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'recipes', 'tidyr', 'tune'

Packages suggested but not available for checking:
  'covr', 'modeldata', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fs’

Packages suggested but not available for checking:
  'covr', 'magick', 'pkgload', 'rmarkdown', 'roxygen2', 'spelling',
  'styler', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'plotly'
Running examples in ‘USgas-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: usgas
> ### Title: US Monthly Consumption of Natural Gas by End Use
> ### Aliases: usgas
> ### Keywords: datasets gas natural state timeseries us
> 
> ### ** Examples
> 
> 
> library(plotly)
Error in library(plotly) : there is no package called ‘plotly’
Execution halted
Package required but not available: ‘tsibble’

Packages suggested but not available for checking:
  'lubridate', 'rmarkdown', 'devtools', 'plotly', 'tidyr', 'testthat',
  'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2'

Packages suggested but not available for checking:
  'GGally', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'vroom', 'V8'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'scales', 'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'ggplot2', 'lubridate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MCMCpack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nlsr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'covr', 'dplyr', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘usmapdata’

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'ggrepel', 'rmarkdown', 'scales', 'sf',
  'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'lubridate', 'readr', 'stringr', 'snakecase'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’
Errors in running code in vignettes:
when running code in ‘utf8.Rmd’
  ...
Error in loadVignetteBuilder(pkgdir) : 
  vignette builder 'rmarkdown' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  ‘utf8.Rmd’ using ‘UTF-8’... failed to complete the test
Packages required but not available: 'dplyr', 'utile.tools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lubridate’

Packages suggested but not available for checking: 'dplyr', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Package suggested but not available for checking: ‘broom’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'bindata', 'Phase123', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatstat.geom’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'stringr', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mldr', 'ROCR'

Packages suggested but not available for checking:
  'C50', 'e1071', 'infotheo', 'kknn', 'rmarkdown', 'testthat',
  'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'readr', 'stringr', 'biomaRt', 'vcfR', 'dplyr', 'tidyr', 'keras',
  'AnnotationHub', 'ensembldb', 'GenomicFeatures', 'rtracklayer',
  'xml2'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'FNN', 'RcppAnnoy', 'dqrng'

Packages suggested but not available for checking:
  'testthat', 'covr', 'bigstatsr', 'RSpectra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'huxtable', 'scales', 'stringr', 'tidyr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggpubr', 'SuperLearner', 'survML', 'e1071',
  'glmnet'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'tidyr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tm’

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'vaers', 'vaersND', 'dplyr', 'rpivotTable'
Packages suggested but not available for checking:
  'vaers', 'vaersND', 'dplyr', 'pivottabler', 'rmarkdown'
Packages required but not available: 'stringr', 'dplyr'

Packages suggested but not available for checking: 'ggplot2', 'tm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gamm4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'SimSurvNMarker', 'psqn', 'lme4', 'RcppArmadillo',
  'RcppEigen', 'testthat'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'xml2', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'testthat', 'stringr', 'rmarkdown'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'GenomicAlignments', 'Rsamtools', 'plyr', 'ggplot2', 'pheatmap',
  'ggplotify', 'ggpubr', 'scales'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'sf', 'leaflet', 'ggplot2', 'htmltools', 'stringr',
  'ggspatial', 'geojsonio'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Skipping checking math rendering: package 'V8' unavailable
Found the following files/directories:
  ‘PredValidationPlots.pdf’ ‘RepStructValidationPlots.pdf’
Packages required but not available:
  'dplyr', 'stringr', 'janitor', 'tidyr', 'listviewer', 'scales',
  'framecleaner', 'badger'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pyMTurkR', 'tm'

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rsdmx', 'bookdown', 'rmarkdown'
Documented arguments not in \usage in Rd file 'validate_extend.Rd':
  ‘varlist:’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘reshape2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages suggested but not available for checking: 'testthat', 'covr'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘roxygen2’
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'broom', 'dplyr', 'ggplot2', 'Rcpp', 'readr', 'rtracklayer',
  'stringr'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'dbplyr', 'devtools', 'DT', 'RMariaDB',
  'rmarkdown', 'testthat', 'vdiffr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cowplot', 'ggplot2', 'reshape2'

Package suggested but not available for checking: ‘roxygen2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘testthat’

Packages suggested but not available for checking: 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'leaflet', 'htmltools', 'dplyr', 'devtools', 'h3jsr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'EFA.MRFA', 'fungible', 'semPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'Seurat', 'SeuratObject', 'sctransform'
Packages required but not available:
  'dplyr', 'urltools', 'readr', 'digest', 'sf'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'lwgeom', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ROCR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plm', 'dplyr', 'ggplot2', 'gplots', 'rstatix', 'stringr', 'ggrepel',
  'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'e1071', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nanoarrow', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'latticeExtra', 'Rcpp'

Packages suggested but not available for checking:
  'glmnet', 'qtl', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RcppEigen', 'doRNG'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'MTS', 'igraph', 'sparsevar', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) betaburr.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Burr distribution due to Parana\'{i}ba et al. (2011) given by
       |                                                                                                                        ^
checkRd: (-1) betafrechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Fr\'{e}chet distribution due to Barreto-Souza et al. (2011) given by
       |                                                                                           ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                      ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                                                      ^
checkRd: (-1) kumburr7.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Kumaraswamy Burr XII distribution due to Parana\'{i}ba et al. (2013) given by
       |                                                                                                                                   ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'SAM', 'caret', 'glmnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'XML2R', 'stringr', 'stringi', 'RISmed'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘energy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'rstan', 'ggplot2'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'testthat', 'ranger'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'gstat', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'stringr', 'dplyr', 'openxlsx', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘jmcm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pROC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FNN’

Packages suggested but not available for checking:
  'Boruta', 'FSelector', 'caret', 'e1071', 'gplots', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'shiny', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'htmltools', 'scales', 'plyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) randomVarImpsRFplot.Rd:97: Escaped LaTeX specials: \&
checkRd: (-1) varSelImpSpecRF.Rd:83: Escaped LaTeX specials: \&
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'dplyr', 'tidyr', 'stringr', 'DT', 'rio'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ars’

Packages suggested but not available for checking:
  'rmarkdown', 'rticles', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'lmeresampler', 'merDeriv', 'lme4', 'saemix'

Packages suggested but not available for checking: 'rmarkdown', 'EnvStats'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmnet', 'lhs', 'mlr', 'mlrMBO', 'smoof', 'spam'

Packages suggested but not available for checking:
  'latticeExtra', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'mockery', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'RcppArmadillo', 'RcppEnsmallen'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
checkRd: (-1) decomposition.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |      ^
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |          ^
checkRd: (-1) moving.estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Package required but not available: ‘copula’

Packages suggested but not available for checking: 'testthat', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lme4’

Packages suggested but not available for checking:
  'VFP', 'STB', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mosum’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'readxl', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'effects', 'plyr', 'ggplot2', 'car', 'rgl', 'AER', 'Hmisc',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘kernlab’
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘Rcpp’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ape', 'dplyr', 'Rcpp', 'stringr'

Packages suggested but not available for checking:
  'adegenet', 'ggplot2', 'poppr', 'reshape2', 'rmarkdown', 'scales',
  'testthat', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'crul', 'webmockr', 'urltools'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'dplyr', 'pkgdown', 'rmarkdown', 'testthat', 'xml2'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'shiny'

Packages suggested but not available for checking:
  'forecast', 'Mcomp', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'geomorph'
Packages required but not available:
  'stringr', 'drc', 'ggplot2', 'reshape2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘compositions’

Packages suggested but not available for checking:
  'ggplot2', 'ggthemes', 'ggtern'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘lhs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'testthat', 'xml2'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'dplyr', 'gghalves', 'ggplot2', 'ggpubr', 'ggtext', 'plyr',
  'tidyr', 'stringr', 'readr', 'scales'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ape’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'plyr', 'dplyr', 'viridis'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pander', 'reshape2', 'qgraph'

Packages suggested but not available for checking: 'devtools', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'GpGp', 'GPvecchia', 'TruncatedNormal', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'lhs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'spelling', 'testthat'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'readxl', 'tidyverse', 'ggplot2', 'tidyr', 'dplyr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'biwavelet', 'spam', 'fields', 'Rcpp'

Packages suggested but not available for checking: 'rmarkdown', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘swephR’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'qpdf', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'htmltools', 'digest'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'htmlwidgets', 'htmltools', 'digest'

Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'listviewer', 'testthat', 'fs', 'usethis',
  'readr', 'lubridate', 'V8', 'learnr', 'dplyr', 'conflicted', 'shiny',
  'rsconnect'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available:
  'RSQLite', 'dplyr', 'dbplyr', 'hoardr', 'xml2', 'stringr', 'plyr'

Packages suggested but not available for checking: 'labdsv', 'interp'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'taxlist', 'qdapRegex', 'stringi', 'vegdata'

Packages suggested but not available for checking:
  'biblio', 'rmarkdown', 'sf', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sf', 'units'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmltools', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr', 'fs', 'conflicted', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat);
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'stringr', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'QCA', 'ggplot2', 'ggpolypath'
Package required but not available: ‘stringr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'dplyr'
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘memoise’

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'spelling', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'haven', 'sf', 'terra'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'collapse'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘igraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘oro.nifti’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'butcher', 'fs', 'pins', 'readr'

Packages suggested but not available for checking:
  'arrow', 'caret', 'clustMixType', 'covr', 'dplyr', 'flexdashboard',
  'ggplot2', 'httpuv', 'keras', 'LiblineaR', 'luz', 'mlr3',
  'mlr3learners', 'mockery', 'modeldata', 'parsnip',
  'paws.machine.learning', 'plotly', 'plumber', 'ranger', 'recipes',
  'reticulate', 'rmarkdown', 'rsconnect', 'slider', 'smdocker',
  'stacks', 'tensorflow', 'testthat', 'torch', 'vdiffr', 'workflows',
  'xgboost', 'yardstick'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'lme4', 'lmerTest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'copula', 'extraDistr', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmltools', 'scales'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘VCA’

Packages suggested but not available for checking: 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘e1071’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Skipping checking math rendering: package 'V8' unavailable
Found the following significant warnings:
  Warning: 'is.R' is deprecated.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/VGAM.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 17.0.6 (5)’
* used Fortran compiler: ‘Debian flang-new version 17.0.6 (5)’
checkRd: (-1) CommonVGAMffArguments.Rd:597: Lost braces
   597 |   Changes relating to the code{lss} argument have very important
       |                               ^
checkRd: (-1) ucberk.Rd:20: Lost braces
    20 |                 called \code{A}, code{B}, \dots, code{F}.
       |                                      ^
checkRd: (-1) ucberk.Rd:20: Lost braces
    20 |                 called \code{A}, code{B}, \dots, code{F}.
       |                                                      ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'Rcpp', 'lme4', 'RcppEigen'

Packages suggested but not available for checking:
  'SuperLearner', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'coRdon', 'ggplot2', 'seqinr', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘e1071’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'ape', 'seqinr'
Running examples in ‘vhica-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CUB
> ### Title: Computes the Codon Usage Bias of DNA sequences
> ### Aliases: CUB
> 
> ### ** Examples
> 
> 	seq.file <- system.file("extdata/Genes", "Amd.fas", package="vhica")
> 	CUB(seq.file)
Error in CUB(seq.file) : Reading FASTA files require package seqinr
Execution halted
Packages required but not available: 'crul', 'stringr', 'tidyr', 'dplyr'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'rmarkdown', 'terra', 'sf'
checkRd: (-1) VirtualArray-single-bracket-method.Rd:6: Lost braces
     6 | \title{Indexing to extract subsets of a 'code{\link[via:XArray-class]{VirtualArray}}'-class object}
       |                                              ^
checkRd: (-1) subset.Rd:20: Lost braces
    20 | \item{drop}{\code{logical} in case the result of subsetting is a single element, should the \\code{\link[via:XArray-class]{VirtualArray}} wrapper be dropped?}
       |                                                                                                   ^
Running examples in ‘via-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: RasterArray-class
> ### Title: Array of "SpatRaster"-class objects
> ### Aliases: RasterArray-class RasterArray
> 
> ### ** Examples
> 
> # example data
>   ex <- rastex()
Error in rastex() : This function requires the 'terra' package.
Execution halted
Running ‘tinytest.R’ [1s/1s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > if (requireNamespace("tinytest", quietly=TRUE)){
  + 	tinytest::test_package("via")
  + }
  
  test_RasterArray_base.R.......    0 tests    Error in library(terra) : there is no package called 'terra'
  Calls: <Anonymous> ... eval -> source -> withVisible -> eval -> eval -> library
  Execution halted
Packages required but not available: 'lubridate', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'rjags'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'cowplot', 'DT', 'ggplot2', 'ggpubr', 'shiny', 'tidyr', 'stringr',
  'scales', 'shinyWidgets'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'sf', 'dplyr', 'xml2', 'dbplyr', 'rvest', 'lubridate', 'kableExtra',
  'mapview', 'leaflet', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RANN', 'RSpectra'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'htmlwidgets'

Packages suggested but not available for checking:
  'rmarkdown', 'shinytest2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) vietnamcode.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:16: Lost braces in \itemize; meant \describe ?
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘sf’

Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'DT'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyjs', 'shinythemes', 'shinyWidgets', 'shinydashboard',
  'golem', 'JBrowseR', 'dplyr', 'tidyr', 'DT', 'ggplot2', 'ggpubr',
  'plotly', 'vroom', 'reshape2'

Packages suggested but not available for checking:
  'testthat', 'shinytest', 'pkgload', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'sf', 'terra', 'ForestTools'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘readr’

Packages suggested but not available for checking:
  'covr', 'dplyr', 'leaflet', 'plotly', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'SuperLearner', 'dplyr', 'ROCR'

Packages suggested but not available for checking:
  'rmarkdown', 'xgboost', 'glmnet', 'ranger', 'covr', 'testthat',
  'ggplot2', 'cowplot', 'cvAUC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'e1071', 'Rcpp', 'ranger'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'reactable', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘stringr’
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'shiny', 'testthat', 'kdecopula'
checkRd: (-1) RVineMatrix.Rd:90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RVineMatrix.Rd:91: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RVineMatrix.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in ‘VineCopula-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BiCopKDE
> ### Title: Kernel estimate of a Bivariate Copula Density
> ### Aliases: BiCopKDE
> 
> ### ** Examples
> 
> # simulate data from Joe copula
> cop <- BiCop(3, tau = 0.3)
> u <- BiCopSim(1000, cop)
> contour(cop)  # true contours
> 
> # kernel contours with standard normal margins
> BiCopKDE(u[, 1], u[, 2])
Error in BiCopKDE(u[, 1], u[, 2]) : 
  The 'kdecopula' package must be installed.
Execution halted
Running ‘additonalExampleRuns.R’ [0s/1s]
  Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'rvinecopulib', 'kde1d', 'Rcpp', 'RcppEigen', 'wdm', 'RcppThread'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'AppliedPredictiveModeling', 'tidyr',
  'dplyr', 'scales', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'copula', 'cubature'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'
Running examples in ‘vioplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: histoplot
> ### Title: histoplot
> ### Aliases: histoplot histoplot.matrix histogram.matrix histoplot.list
> ###   histoplot.data.frame histoplot.formula histoplot.default
> ### Keywords: graphics histogram plot
> 
> ### ** Examples
> 
> 
> # box- vs histogram-plot
> par(mfrow=c(2,1))
> mu<-2
> si<-0.6
> bimodal<-c(rnorm(1000,-mu,si),rnorm(1000,mu,si))
> uniform<-runif(2000,-4,4)
> normal<-rnorm(2000,0,3)
> histoplot(bimodal,uniform,normal)
> boxplot(bimodal,uniform,normal)
> 
> # add to an existing plot
> x <- rnorm(100)
> y <- rnorm(100)
> plot(x, y, xlim=c(-5,5), ylim=c(-5,5))
> histoplot(x, col="tomato", horizontal=TRUE, at=-4, add=TRUE,lty=2, rectCol="gray")
> histoplot(y, col="cyan", horizontal=FALSE, at=-4, add=TRUE,lty=2)
> 
> # formula input
> data("iris")
> histoplot(Sepal.Length~Species, data = iris, main = "Sepal Length",
+         col=c("lightgreen", "lightblue", "palevioletred"))
> legend("topleft", legend=c("setosa", "versicolor", "virginica"),
+        fill=c("lightgreen", "lightblue", "palevioletred"), cex = 0.5)
> 
> data("diamonds", package = "ggplot2")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘ggplot2’
Calls: data -> find.package
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'ggbeeswarm'
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Error(s) in re-building vignettes:
  ...
Note: skipping ‘methodComparison.Rnw’ due to unavailable dependencies:
  'ggplot2'

--- re-building ‘usageExamples.Rnw’ using Sweave

Error: processing vignette 'usageExamples.Rnw' failed with diagnostics:
 chunk 18 (label = showGg) 
Error in library(ggbeeswarm) : there is no package called ‘ggbeeswarm’

--- failed re-building ‘usageExamples.Rnw’

SUMMARY: processing the following file failed:
  ‘usageExamples.Rnw’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'ggplot2', 'yardstick'

Packages suggested but not available for checking:
  'bookdown', 'DT', 'covr', 'dplyr', 'fastshap', 'modeldata',
  'NeuralNetTools', 'pdp', 'rmarkdown'

Packages which this enhances but not available for checking:
  'C50', 'caret', 'Cubist', 'gbm', 'glmnet', 'lightgbm', 'mixOmics',
  'mlr', 'mlr3', 'parsnip', 'ranger', 'RSNNS', 'sparklyr',
  'tidymodels', 'workflows', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'applicable', 'dplyr', 'ggplot2', 'kknn', 'parsnip', 'recipes',
  'vdiffr', 'workflows'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'kknn', 'parsnip', 'recipes', 'rsample', 'tune', 'vdiffr',
  'workflows', 'workflowsets'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DALEX', 'DALEXtra', 'dplyr', 'kknn', 'parsnip', 'recipes',
  'rsample', 'vdiffr', 'workflows'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rmgarch', 'BigVAR', 'ks', 'matlib'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'covr'
checkRd: (-1) viridis.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:24-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:31-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:45: Lost braces in \itemize; meant \describe ?
Running examples in ‘viridisLite-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: viridis
> ### Title: Viridis Color Palettes
> ### Aliases: viridis viridisMap magma inferno plasma cividis rocket mako
> ###   turbo
> 
> ### ** Examples
> 
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'scales', 'vdiffr', 'svglite', 'testthat', 'covr', 'rmarkdown',
  'terra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'cowplot', 'viridis', 'plyr', 'tidyr'

Packages suggested but not available for checking:
  'devtools', 'kableExtra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘HMDHFDplus’

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'lubridate', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'terra', 'ade4', 'rnaturalearth', 'raster', 'viridis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'odbc', 'fs', 'digest'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr', 'jsonld', 'dplyr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dials', 'dplyr', 'parsnip', 'recipes', 'rsample', 'stacks', 'tune',
  'workflows', 'workflowsets', 'yardstick'

Packages suggested but not available for checking:
  'baguette', 'kernlab', 'kknn', 'ranger', 'rmarkdown', 'rules',
  'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking: 'dplyr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'dplyr', 'ggplot2', 'shinyjs', 'tidyr', 'ggrepel', 'DT'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rglpk', 'e1071', 'kernlab', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'ggpmisc', 'reshape2'

Packages suggested but not available for checking:
  'devtools', 'testthat', 'flux', 'rmarkdown', 'stringi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'car', 'dplyr', 'tidyr'
Running examples in ‘VisCollin-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: biomass
> ### Title: Biomass Production in the Cape Fear Estuary
> ### Aliases: biomass
> ### Keywords: dataset
> 
> ### ** Examples
> 
> data(biomass)
> str(biomass)
'data.frame':	45 obs. of  17 variables:
 $ loc    : Factor w/ 3 levels "OI","SI","SM": 1 1 1 1 1 1 1 1 1 1 ...
 $ type   : Factor w/ 3 levels "DVEG","SHRT",..: 1 1 1 1 1 2 2 2 2 2 ...
 $ biomass: int  676 516 1052 868 1008 436 544 680 640 492 ...
 $ H2S    : int  -610 -570 -610 -560 -610 -620 -590 -610 -580 -610 ...
 $ sal    : int  33 35 32 30 33 33 36 30 38 30 ...
 $ Eh7    : int  -290 -268 -282 -232 -318 -308 -264 -340 -252 -288 ...
 $ pH     : num  5 4.75 4.2 4.4 5.55 5.05 4.25 4.45 4.75 4.6 ...
 $ buf    : num  2.34 2.66 4.18 3.6 1.9 3.22 4.5 3.5 2.62 3.04 ...
 $ P      : num  20.2 15.6 18.7 22.8 37.8 ...
 $ K      : num  1442 1299 1154 1045 522 ...
 $ Ca     : num  2150 1845 1750 1674 3360 ...
 $ Mg     : num  5169 4358 4041 3966 4609 ...
 $ Na     : num  35184 28170 26455 25073 31664 ...
 $ Mn     : num  14.29 7.73 17.81 49.15 30.52 ...
 $ Zn     : num  16.5 14 15.3 17.3 22.3 ...
 $ Cu     : num  5.02 4.19 4.79 4.09 4.6 ...
 $ NH4    : num  59.5 51.4 68.8 82.3 70.9 ...
> biomass.mod <- lm (biomass ~ H2S + sal + Eh7 + pH + buf + P + K + Ca + Mg + Na +
+                            Mn + Zn + Cu + NH4,
+                  data=biomass)
> car::vif(biomass.mod)
Error in loadNamespace(x) : there is no package called ‘car’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'scales', 'Rcpp'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggExtra', 'ggnewscale', 'ggplot2', 'Hmisc', 'netmeta',
  'plyr', 'qgraph', 'reshape2', 'tidyr'

Packages suggested but not available for checking: 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'tidyr', 'dplyr', 'readr', 'scales'

Packages suggested but not available for checking:
  'testthat', 'plotly', 'rmarkdown', 'vdiffr', 'spelling', 'covr',
  'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'stringr', 'ggplot2', 'reshape2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rssa’

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rstan', 'Rcpp', 'sqldf', 'rstantools', 'RcppParallel', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking:
  'shiny', 'rmarkdown', 'pander'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'usethis', 'testthat', 'RSQLite', 'rmarkdown'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'rmarkdown', 'igraph', 'shiny', 'shinyWidgets', 'colourpicker',
  'sparkline', 'ggraph', 'tidygraph'

VignetteBuilder package required for checking but not installed: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rgl', 'ggplot2'
Packages required but not available:
  'broom', 'cowplot', 'dplyr', 'DT', 'ggplot2', 'gt', 'kableExtra',
  'tidycmprsk', 'tidyr'

Packages suggested but not available for checking:
  'ggpubr', 'learnr', 'rmarkdown', 'spelling', 'testthat', 'vdiffr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'plotly', 'ggplot2', 'ggrepel'

Packages suggested but not available for checking:
  'prettydoc', 'rmarkdown', 'testthat', 'covr', 'highcharter'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: ‘ggplot2’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'testthat', 'vdiffr', 'xplorerr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available:
  'Hmisc', 'dplyr', 'polyclip', 'oro.dicom', 'shiny', 'shinyjs', 'DT',
  'htmlTable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'htmlwidgets'

Packages suggested but not available for checking:
  'devtools', 'roxygen2', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gbm', 'e1071', 'FactoMineR', 'ggplot2', 'dplyr', 'MBA', 'pROC',
  'ggrepel'

Package suggested but not available for checking: ‘egg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyBS', 'tidyr', 'PBSmapping', 'plyr', 'dplyr',
  'formattable', 'ggplot2', 'ggdendro', 'ggrepel', 'readxl', 'DT',
  'Rtsne', 'svglite', 'tikzDevice', 'shinybusy'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'shiny', 'shinyhelper', 'shinycssloaders', 'bsplus', 'DT', 'ggplot2',
  'dplyr', 'readr', 'tidyr', 'fastcluster', 'dendextend',
  'ComplexHeatmap', 'patchwork', 'kableExtra'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'rmarkdown'

Packages suggested but not available for checking:
  'covr', 'testthat', 'stringr', 'htmltools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'reshape2', 'scales', 'ggrepel',
  'htmltools', 'networkD3', 'rmarkdown', 'wpa', 'ggraph', 'igraph',
  'tidytext', 'ggwordcloud'

Packages suggested but not available for checking:
  'flexdashboard', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'plotly', 'seqinr', 'tidyr', 'vcfR'

Packages suggested but not available for checking:
  'kableExtra', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'condvis2', 'ggplot2', 'GGally', 'ggalt', 'dplyr', 'igraph',
  'flashlight', 'ggnewscale'

Packages suggested but not available for checking:
  'intergraph', 'mlr', 'tidymodels', 'e1071', 'lemon', 'mlr3',
  'mlr3learners', 'scales', 'ranger', 'vip', 'rmarkdown', 'testthat',
  'covr', 'xgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'DALEX'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'ingredients'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'htmlwidgets', 'stringr'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'stringr', 'tm', 'plyr', 'dplyr', 'reshape2', 'igraph', 'rgexf',
  'httpuv'
Packages required but not available:
  'Rcpp', 'dplyr', 'tidyr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggplot2', 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'ggrepel', 'ggplot2', 'ggiraph', 'ggsci'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) aminoAcidFun.Rd:37: Lost braces
    37 | \item{ownVLFreduced}{ownVLFMatrix}{A matrix containing only those specimen that have VLFs as well as the amino acids at the positions that contain VLFs and NAs in all other positions of the sequence.  Only appears if own is not NULL.}
       |                                   ^
checkRd: (-1) vlfFun.Rd:36: Lost braces
    36 | \item{ownVLFreduced}{ownVLFMatrix}{A matrix containing only those specimen that have VLFs as well as the nucleotides at the positions that contain VLFs and NAs in all other positions of the sequence.  Only appears if own is not NULL.}
       |                                   ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'RTransferEntropy', 'ggplot2'

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'OpenImageR', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'VMDecomp', 'forecast', 'e1071', 'nnfor'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'forecast', 'nnfor', 'VMDecomp'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'readr', 'stringr', 'tidyr', 'ggpubr', 'imager', 'av',
  'dplyr', 'pdftools', 'doFuture', 'progressr', 'future', 'scales'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'ddpcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘testthat’
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: ‘igraph’
checkRd: (-1) getTurnType.Rd:38: Lost braces; missing escapes or markup?
    38 | Return one of {Vocalisation, GrpVocalisation, ...} or identifier.
       |               ^
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'dplyr', 'reticulate'

Package suggested but not available for checking: ‘gm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'FSA', 'ggplot2', 'ggpubr', 'ggthemes', 'kableExtra', 'phia',
  'plotly', 'soundgen', 'rcompanion', 'rmarkdown', 'shiny',
  'shinyFiles', 'shinyjs', 'stringr'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dbarts', 'posterior', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'BCEA', 'INLA', 'sf', 'rmarkdown', 'rjags', 'scales',
  'dplyr', 'heemod'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppGSL'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'plotly', 'ggplot2', 'ggpubr', 'htmlwidgets', 'Rfast'

Packages suggested but not available for checking:
  'DESeq2', 'edgeR', 'qvalue', 'rmarkdown', 'kableExtra', 'usethis',
  'easylabel'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'DT', 'ggplot2', 'tidyr', 'shiny'

Package suggested but not available for checking: ‘safetyGraphics’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'dplyr', 'tidyr', 'rmarkdown', 'ggplot2', 'diverse', 'geosphere'
Packages required but not available:
  'dplyr', 'fields', 'ggplot2', 'ggtext', 'modEvA', 'rangeBuilder',
  'terra', 'sf'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'rnaturalearth'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'data.tree', 'htmlwidgets', 'shiny', 'shinyjs', 'DT'

Packages suggested but not available for checking:
  'rmarkdown', 'scales', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'httpuv', 'igraph', 'shiny', 'systemfonts', 'syuzhet', 'tm',
  'vosonSML', 'wordcloud'

Packages suggested but not available for checking:
  'dplyr', 'DT', 'htmlwidgets', 'shinydashboard', 'shinyjs',
  'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'httpuv', 'igraph', 'readr', 'rmarkdown', 'robotstxt', 'rvest',
  'testthat', 'tidytext', 'urltools', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fields’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'scales'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'formattable', 'fields'

Package suggested but not available for checking: ‘ggplot2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘extraDistr’

Package suggested but not available for checking: ‘testthat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'snakecase', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'conflicted', 'covr', 'rmarkdown', 'spelling', 'testthat', 'vcr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'shiny', 'htmltools'

Packages suggested but not available for checking: 'testthat', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) compute.means.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) norm.wattfabricius.Rd:5: Escaped LaTeX specials: \&
Packages required but not available:
  'lmerTest', 'gamm4', 'oro.nifti', 'ggplot2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'FNN', 'Rfast', 'dplyr', 'fastcluster', 'geometry', 'raster', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'classInt', 'dplyr', 'ggplot2', 'readr', 'stringr', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/VPdtw.Rcheck/00install.out’ for details.
Packages required but not available:
  'ggplot2', 'oce', 'dplyr', 'interp', 'magick', 'tidyr', 'stringr',
  'metR', 'lubridate', 'usethis'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'rmarkdown', 'testthat'
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(vrnmf)
  > 
  > testthat::test_check("vrnmf")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package required but not available: ‘tzdb’

Packages suggested but not available for checking:
  'archive', 'covr', 'dplyr', 'fs', 'ggplot2', 'patchwork',
  'rmarkdown', 'scales', 'spelling', 'testthat', 'tidyr', 'xml2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MixGHD’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'survminer', 'flexsurv', 'ggpubr'

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcpp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmnet', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'rmdformats', 'qpdf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggplot2', 'invertiforms', 'RSpectra'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'GGally', 'igraph', 'rmarkdown', 'scales',
  'testthat', 'tidygraph', 'tidyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) Data-Examples.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aquaporin.Rd:10: Lost braces in \itemize; meant \describe ?
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Package suggested but not available for checking: ‘testthat’
checkRd: (-1) vsts_create_release.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vsts_create_release.Rd:34: Lost braces in \itemize; meant \describe ?
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'ranger', 'Rborist'
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping checking math rendering: package 'V8' unavailable
Packages required but not available: 'kableExtra', 'haven'

Packages suggested but not available for checking: 'rmarkdown', 'survey'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘digest’

Packages suggested but not available for checking:
  'lme4', 'rmarkdown', 'RSQLite', 'R.rsp'

VignetteBuilder package required for checking but not installed: ‘R.rsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DiagrammeR', 'DiagrammeRsvg', 'htmlwidgets', 'shiny'

Packages suggested but not available for checking:
  'rmarkdown', 'ggplot2', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shiny', 'rmarkdown', 'EnvStats'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘rmarkdown’
Packages required but not available: 'htmltools', 'htmlwidgets'

Packages suggested but not available for checking:
  'rmarkdown', 'shiny', 'testthat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plyr’

Packages suggested but not available for checking:
  'covr', 'testthat', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dplyr', 'findR', 'stringr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.