checkRd: (-1) RGWAS.epistasis.Rd:46: Lost braces; missing escapes or markup?
    46 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                        ^
checkRd: (-1) RGWAS.epistasis.Rd:46: Lost braces; missing escapes or markup?
    46 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                     ^
checkRd: (-1) RGWAS.multisnp.Rd:59: Lost braces; missing escapes or markup?
    59 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                        ^
checkRd: (-1) RGWAS.multisnp.Rd:59: Lost braces; missing escapes or markup?
    59 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                     ^
checkRd: (-1) RGWAS.multisnp.interaction.Rd:62: Lost braces; missing escapes or markup?
    62 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                        ^
checkRd: (-1) RGWAS.multisnp.interaction.Rd:62: Lost braces; missing escapes or markup?
    62 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                     ^
checkRd: (-1) RGWAS.normal.Rd:47: Lost braces; missing escapes or markup?
    47 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                        ^
checkRd: (-1) RGWAS.normal.Rd:47: Lost braces; missing escapes or markup?
    47 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                     ^
checkRd: (-1) RGWAS.normal.interaction.Rd:55: Lost braces; missing escapes or markup?
    55 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                        ^
checkRd: (-1) RGWAS.normal.interaction.Rd:55: Lost braces; missing escapes or markup?
    55 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                     ^
checkRd: (-1) RGWAS.twostep.Rd:71: Lost braces; missing escapes or markup?
    71 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                        ^
checkRd: (-1) RGWAS.twostep.Rd:71: Lost braces; missing escapes or markup?
    71 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                     ^
checkRd: (-1) RGWAS.twostep.epi.Rd:63: Lost braces; missing escapes or markup?
    63 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                        ^
checkRd: (-1) RGWAS.twostep.epi.Rd:63: Lost braces; missing escapes or markup?
    63 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                     ^
checkRd: (-1) Rice_geno_score.Rd:17: Lost braces; missing escapes or markup?
    17 | A dataset containing the information of marker genotype (scored with {-1, 0, 1})
       |                                                                      ^
checkRd: (-1) SS_gwas.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{x}{A N (lines) x M (markers) marker genotype data (matrix), coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                            ^
checkRd: (-1) SS_gwas.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{x}{A N (lines) x M (markers) marker genotype data (matrix), coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                         ^
checkRd: (-1) estNetwork.Rd:86: Lost braces; missing escapes or markup?
    86 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                        ^
checkRd: (-1) estNetwork.Rd:86: Lost braces; missing escapes or markup?
    86 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                     ^
checkRd: (-1) estNetwork.Rd:139: Lost braces; missing escapes or markup?
   139 | complemented haplotype will consist of only homozygous sites ({-1, 1}).
       |                                                               ^
checkRd: (-1) estNetwork.Rd:140: Lost braces; missing escapes or markup?
   140 | If FALSE, complemented haplotype will consist of both homozygous & heterozygous sites ({-1, 0, 1}).}
       |                                                                                        ^
checkRd: (-1) estPhylo.Rd:78: Lost braces; missing escapes or markup?
    78 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                        ^
checkRd: (-1) estPhylo.Rd:78: Lost braces; missing escapes or markup?
    78 | Columns 4 and higher contain the marker scores for each line, coded as {-1, 0, 1} = {aa, Aa, AA}.}
       |                                                                                     ^