checkRd: (-1) bilat.symmetry.Rd:40: Lost braces; missing escapes or markup?
    40 | symmetry {=TRUE} or matching symmetry {=FALSE}}
       |          ^
checkRd: (-1) bilat.symmetry.Rd:40: Lost braces; missing escapes or markup?
    40 | symmetry {=TRUE} or matching symmetry {=FALSE}}
       |                                       ^
checkRd: (-1) bilat.symmetry.Rd:128: Lost braces; missing escapes or markup?
   128 | Analyses of symmetry for matched pairs of objects is implemented when {object.sym=FALSE}. Here, 
       |                                                                       ^
checkRd: (-1) bilat.symmetry.Rd:139: Lost braces; missing escapes or markup?
   139 | Analyses of object symmetry is implemented when {object.sym=TRUE}. Here, a 3D array [p x k x n] 
       |                                                 ^
checkRd: (-1) compare.evol.rates.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{phy}{A phylogenetic tree of {class phylo} - see \code{\link[ape]{read.tree}} in library ape}
       |                                   ^
checkRd: (-1) compare.multi.evol.rates.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{phy}{A phylogenetic tree of {class phylo} - see \code{\link[ape]{read.tree}} in library ape}
       |                                   ^
checkRd: (-1) gm.prcomp.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:59-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:61-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:65-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:77-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:91-92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:93-95: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:96-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:101-104: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gm.prcomp.Rd:197: Lost braces
   197 | \code{\link{ordinate}}{ A more bare-bones ordination function on which gm.prcomp depends.}
       |                       ^
checkRd: (-1) integration.Vrel.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{phy}{A phylogenetic tree of {class phylo} - see \code{\link[ape]{read.tree}} in library ape}
       |                                   ^
checkRd: (-1) phylo.integration.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{phy}{A phylogenetic tree of {class phylo} - see \code{\link[ape]{read.tree}} in library ape}
       |                                   ^
checkRd: (-1) phylo.modularity.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{phy}{A phylogenetic tree of {class phylo} - see \code{\link[ape]{read.tree}} in library ape}
       |                                   ^
checkRd: (-1) physignal.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{phy}{A phylogenetic tree of {class phylo} - see \code{\link[ape]{read.tree}} in library ape}
       |                                   ^
checkRd: (-1) physignal.z.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{phy}{A phylogenetic tree of {class phylo} - see \code{\link[ape]{read.tree}} in library ape}
       |                                   ^
checkRd: (-1) physignal.z.Rd:113-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) physignal.z.Rd:119-122: Lost braces in \itemize; meant \describe ?
checkRd: (-1) physignal.z.Rd:123-129: Lost braces in \itemize; meant \describe ?
checkRd: (-1) physignal.z.Rd:130-132: Lost braces in \itemize; meant \describe ?
checkRd: (-1) physignal.z.Rd:133-135: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotRefToTarget.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{mesh}{A mesh3d object for use with {method="surface"}}
       |                                          ^
checkRd: (-1) plotRefToTarget.Rd:43: Lost braces; missing escapes or markup?
    43 | \item{useRefPts}{An option (logical value) to use reference configuration points rather than target configuration points (when {method = "TPS"})}
       |                                                                                                                                ^
checkRd: (-1) plotRefToTarget.Rd:55: Lost braces; missing escapes or markup?
    55 |  specimen. The option {mag} allows the user to indicates the degree of magnification to be used when 
       |                       ^
checkRd: (-1) plotRefToTarget.Rd:78: Lost braces; missing escapes or markup?
    78 |  Requires mesh3d object in option {mesh}, made using \code{\link{warpRefMesh}}. 
       |                                   ^
checkRd: (-1) plotRefToTarget.Rd:48: Lost braces; missing escapes or markup?
    48 | If using {method="surface"}, function will return the warped mesh3d object.
       |          ^
checkRd: (-1) plotspec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{fixed}{Numeric The number of fixed template landmarks (listed first in {digitspec})}
       |                                                                              ^
checkRd: (-1) plotspec.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{centered}{Logical Whether the data matrix is in the surface mesh coordinate system ({centered = FALSE}) or
       |                                                                                           ^
checkRd: (-1) plotspec.Rd:32: Lost braces; missing escapes or markup?
    32 | if the data were collected after the mesh was centered ({centered = TRUE})- see details.}
       |                                                         ^
checkRd: (-1) plotspec.Rd:45: Lost braces; missing escapes or markup?
    45 | Therefore use this function with {centered=TRUE}. Data collected outside geomorph should be read using
       |                                  ^
checkRd: (-1) plotspec.Rd:46: Lost braces; missing escapes or markup?
    46 | {centered=FALSE}. The function assumes the fixed landmarks are listed at the beginning of
       | ^
checkRd: (-1) plotspec.Rd:47: Lost braces; missing escapes or markup?
    47 | the coordinate matrix ({digitspec}).
       |                        ^
checkRd: (-1) procD.pgls.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{phy}{A phylogenetic tree of {class phylo} - see \code{\link[ape]{read.tree}} in library ape}
       |                                   ^