checkRd: (-1) covar.plot.Rd:63: Lost braces
    63 |      \item code{"intercept"} for using the estimated posterior intercept for each sample.
       |                ^
checkRd: (-1) crown.stem.Rd:10: Lost braces
    10 | \item{tree}{a code{"phylo"} object}
       |                   ^
checkRd: (-1) dispRity.metric.Rd:46: Lost braces
    46 | \item{...}{Optional arguments to be passed to the function. Usual optional arguments are \code{method} for specifying the method for calculating distance passed to \code{\link[vegan]{vegdist}} (e.g. \code{method = "euclidean"} - default - or \code{method = "manhattan"}) or \code{k.root} to scale the result using the eqn{kth} root. See details below for available optional arguments for each function.}
       |                                                                                                                                                                                                                                                                                                                                  ^
checkRd: (-1) dispRity.metric.Rd:79: Lost braces; missing escapes or markup?
    79 |   \item \code{func.div}: The functional divergence (Vill'{e}ger et al. 2008): the ratio of deviation from the centroid (this is similar to \code{FD::dbFD()$FDiv}).
       |                                                          ^
checkRd: (-1) dispRity.metric.Rd:81: Lost braces; missing escapes or markup?
    81 |   \item \code{func.eve}: The functional evenness (Vill'{e}ger et al. 2008): the minimal spanning tree distances evenness (this is similar to \code{FD::dbFD()$FEve}). If the matrix used is not a distance matrix, the distance method can be passed using, for example \code{method = "euclidean"} (default).
       |                                                        ^
checkRd: (-1) dispRity.metric.Rd:97: Lost braces; missing escapes or markup?
    97 |   \item \code{centroids}: calculates the distance between each row and the centroid of the matrix (Lalibert'{e} 2010). This function can take an optional arguments \code{centroid} for defining the centroid (if missing (default), the centroid of the matrix is used). This argument can be either a subset of coordinates matching the matrix's dimensions (e.g. \code{c(0, 1, 2)} for a matrix with three columns) or a single value to be the coordinates of the centroid (e.g. \code{centroid = 0} will set the centroid coordinates to \code{c(0, 0, 0)} for a three dimensional matrix). NOTE: distance is calculated as \code{"euclidean"} by default, this can be changed using the \code{method} argument.
       |                                                                                                             ^
checkRd: (-1) dispRity.metric.Rd:119: Lost braces
   119 | Other options include the centering of the projections on 0.5 (code{centre = TRUE}; default) ranging the projection onto the vector (\code{point1}, \code{point2}) between -1 and 1 (higher or lower values project beyond the vector); and whether to output the projection values as absolute values (\code{abs = TRUE}; default). These two last options only affect the results from \code{measure = "position"}.
       |                                                                    ^
checkRd: (-1) dtt.dispRity.Rd:33: Lost braces
    33 | \item{...}{Any other arguments to be passed to \\code{geiger::dtt}.}
       |                                                      ^
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checkRd: (-1) model.test.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model.test.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) model.test.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly