checkRd: (-1) fl.drFitModel.Rd:28: Lost braces; missing escapes or markup?
    28 | \item \code{yEC50}: {Response value related to EC50.}
       |                     ^
checkRd: (-1) fl.drFitModel.Rd:29: Lost braces; missing escapes or markup?
    29 | \item \code{y.min}: {Minimum fluorescence ('leakiness', if lowest concentration is 0).}
       |                     ^
checkRd: (-1) fl.drFitModel.Rd:30: Lost braces; missing escapes or markup?
    30 | \item \code{y.max}: {Maximum fluorescence.}
       |                     ^
checkRd: (-1) fl.drFitModel.Rd:31: Lost braces
    31 | \item \code{fc}: {Fold change (\code{y.max} divided by \code{y.min}).}
       |                  ^
checkRd: (-1) fl.drFitModel.Rd:32: Lost braces; missing escapes or markup?
    32 | \item \code{K}: {Concentration at half-maximal response ('sensitivity').}
       |                 ^
checkRd: (-1) fl.drFitModel.Rd:33: Lost braces; missing escapes or markup?
    33 | \item \code{n}: {Cooperativity.}
       |                 ^
checkRd: (-1) fl.drFitModel.Rd:34: Lost braces; missing escapes or markup?
    34 | \item \code{yEC50.orig}: {Response value for EC50 in original scale, if a transformation was applied.}
       |                          ^
checkRd: (-1) fl.drFitModel.Rd:35: Lost braces; missing escapes or markup?
    35 | \item \code{K.orig}: {K in original scale, if a transformation was applied.}
       |                      ^
checkRd: (-1) fl.drFitModel.Rd:36: Lost braces
    36 | \item \code{test.nm}: {Test identifier extracted from \code{test}.}
       |                       ^
checkRd: (-1) flFitLinear.Rd:45: Lost braces; missing escapes or markup?
    45 | \item \code{y0}: {Minimum fluorescence value considered for the heuristic linear method.}
       |                  ^
checkRd: (-1) flFitLinear.Rd:46: Lost braces; missing escapes or markup?
    46 | \item \code{dY}: {Difference in maximum fluorescence and minimum fluorescence}
       |                  ^
checkRd: (-1) flFitLinear.Rd:47: Lost braces; missing escapes or markup?
    47 | \item \code{A}: {Maximum fluorescence}
       |                 ^
checkRd: (-1) flFitLinear.Rd:48: Lost braces; missing escapes or markup?
    48 | \item \code{y0_lm}: {Intersection of the linear fit with the abscissa.}
       |                     ^
checkRd: (-1) flFitLinear.Rd:49: Lost braces; missing escapes or markup?
    49 | \item \code{max_slope}: {Maximum slope of the linear fit.}
       |                         ^
checkRd: (-1) flFitLinear.Rd:50: Lost braces; missing escapes or markup?
    50 | \item \code{tD}: {Doubling time.}
       |                  ^
checkRd: (-1) flFitLinear.Rd:51: Lost braces; missing escapes or markup?
    51 | \item \code{slope.se}: {Standard error of the maximum slope.}
       |                        ^
checkRd: (-1) flFitLinear.Rd:52: Lost braces; missing escapes or markup?
    52 | \item \code{lag}: {Lag X.}
       |                   ^
checkRd: (-1) flFitLinear.Rd:53: Lost braces; missing escapes or markup?
    53 | \item \code{x.max_start}: {X value of the first data point within the window used for the linear regression.}
       |                           ^
checkRd: (-1) flFitLinear.Rd:54: Lost braces; missing escapes or markup?
    54 | \item \code{x.max_end}: {X value of the last data point within the window used for the linear regression.}
       |                         ^
checkRd: (-1) flFitLinear.Rd:55: Lost braces; missing escapes or markup?
    55 | \item \code{x.turn}: {For biphasic: X at the inflection point that separates two phases.}
       |                      ^
checkRd: (-1) flFitLinear.Rd:56: Lost braces; missing escapes or markup?
    56 | \item \code{max.slope2}: {For biphasic: Slope of the second phase.}
       |                          ^
checkRd: (-1) flFitLinear.Rd:57: Lost braces; missing escapes or markup?
    57 | \item \code{tD2}: {Doubling time of the second phase.}
       |                   ^
checkRd: (-1) flFitLinear.Rd:58: Lost braces; missing escapes or markup?
    58 | \item \code{y0_lm2}: {For biphasic: Intersection of the linear fit of the second phase with the abscissa.}
       |                      ^
checkRd: (-1) flFitLinear.Rd:59: Lost braces; missing escapes or markup?
    59 | \item \code{lag2}: {For biphasic: Lag time determined for the second phase..}
       |                    ^
checkRd: (-1) flFitLinear.Rd:60: Lost braces; missing escapes or markup?
    60 | \item \code{x.max2_start}: {For biphasic: X value of the first data point within the window used for the linear regression of the second phase.}
       |                            ^
checkRd: (-1) flFitLinear.Rd:61: Lost braces; missing escapes or markup?
    61 | \item \code{x.max2_end}: {For biphasic: X value of the last data point within the window used for the linear regression of the second phase.}
       |                          ^
checkRd: (-1) flFitSpline.Rd:55: Lost braces; missing escapes or markup?
    55 | \item \code{A}: {Maximum fluorescence.}
       |                 ^
checkRd: (-1) flFitSpline.Rd:56: Lost braces; missing escapes or markup?
    56 | \item \code{dY}: {Difference in maximum fluorescence and minimum fluorescence.}
       |                  ^
checkRd: (-1) flFitSpline.Rd:57: Lost braces; missing escapes or markup?
    57 | \item \code{max_slope}: {Maximum slope of fluorescence-vs.-x data (i.e., maximum in first derivative of the spline).}
       |                         ^
checkRd: (-1) flFitSpline.Rd:58: Lost braces; missing escapes or markup?
    58 | \item \code{x.max}: {Time at the maximum slope.}
       |                     ^
checkRd: (-1) flFitSpline.Rd:59: Lost braces; missing escapes or markup?
    59 | \item \code{lambda}: {Lag time.}
       |                      ^
checkRd: (-1) flFitSpline.Rd:60: Lost braces; missing escapes or markup?
    60 | \item \code{b.tangent}: {Intersection of the tangent at the maximum slope with the abscissa.}
       |                         ^
checkRd: (-1) flFitSpline.Rd:61: Lost braces; missing escapes or markup?
    61 | \item \code{max_slope2}: {For biphasic course of fluorescence: Maximum slope of fluorescence-vs.-x data of the second phase.}
       |                          ^
checkRd: (-1) flFitSpline.Rd:62: Lost braces; missing escapes or markup?
    62 | \item \code{lambda2}: {For biphasic course of fluorescence: Lag time determined for the second phase.}
       |                       ^
checkRd: (-1) flFitSpline.Rd:63: Lost braces; missing escapes or markup?
    63 | \item \code{x.max2}: {For biphasic course of fluorescence: Time at the maximum slope of the second phase.}
       |                      ^
checkRd: (-1) flFitSpline.Rd:64: Lost braces; missing escapes or markup?
    64 | \item \code{b.tangent2}: {For biphasic course of fluorescence: Intersection of the tangent at the maximum slope of the second phase with the abscissa.}
       |                          ^
checkRd: (-1) flFitSpline.Rd:65: Lost braces; missing escapes or markup?
    65 | \item \code{integral}: {Area under the curve of the spline fit.}
       |                        ^
checkRd: (-1) growth.drFitSpline.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{spline.low}{\code{x} and {y} values of \code{\link{lowess}} spline fit on raw data. Used to call \code{\link{smooth.spline}}.}
       |                                ^
checkRd: (-1) growth.drFitSpline.Rd:29: Lost braces; missing escapes or markup?
    29 | \item \code{EC50}: {Concentration at half-maximal response.}
       |                    ^
checkRd: (-1) growth.drFitSpline.Rd:30: Lost braces; missing escapes or markup?
    30 | \item \code{yEC50}: {Response value related to EC50.}
       |                     ^
checkRd: (-1) growth.drFitSpline.Rd:31: Lost braces; missing escapes or markup?
    31 | \item \code{EC50.orig}: {EC50 value in original scale, if a transformation was applied.}
       |                         ^
checkRd: (-1) growth.drFitSpline.Rd:32: Lost braces; missing escapes or markup?
    32 | \item \code{yEC50.orig}: {Response value for EC50 in original scale, if a transformation was applied.}
       |                          ^
checkRd: (-1) growth.gcFitLinear.Rd:65: Lost braces; missing escapes or markup?
    65 | \item \code{y0}: {Minimum growth value considered for the heuristic linear method.}
       |                  ^
checkRd: (-1) growth.gcFitLinear.Rd:66: Lost braces; missing escapes or markup?
    66 | \item \code{dY}: {Difference in maximum growth and minimum growth.}
       |                  ^
checkRd: (-1) growth.gcFitLinear.Rd:67: Lost braces; missing escapes or markup?
    67 | \item \code{A}: {Maximum growth.}
       |                 ^
checkRd: (-1) growth.gcFitLinear.Rd:68: Lost braces; missing escapes or markup?
    68 | \item \code{y0_lm}: {Intersection of the linear fit with the abscissa.}
       |                     ^
checkRd: (-1) growth.gcFitLinear.Rd:69: Lost braces; missing escapes or markup?
    69 | \item \code{mumax}: {Maximum growth rate (i.e., slope of the linear fit).}
       |                     ^
checkRd: (-1) growth.gcFitLinear.Rd:70: Lost braces; missing escapes or markup?
    70 | \item \code{tD}: {Doubling time.}
       |                  ^
checkRd: (-1) growth.gcFitLinear.Rd:71: Lost braces; missing escapes or markup?
    71 | \item \code{mu.se}: {Standard error of the maximum growth rate.}
       |                     ^
checkRd: (-1) growth.gcFitLinear.Rd:72: Lost braces; missing escapes or markup?
    72 | \item \code{lag}: {Lag time.}
       |                   ^
checkRd: (-1) growth.gcFitLinear.Rd:73: Lost braces; missing escapes or markup?
    73 | \item \code{tmax_start}: {Time value of the first data point within the window used for the linear regression.}
       |                          ^
checkRd: (-1) growth.gcFitLinear.Rd:74: Lost braces; missing escapes or markup?
    74 | \item \code{tmax_end}: {Time value of the last data point within the window used for the linear regression.}
       |                        ^
checkRd: (-1) growth.gcFitLinear.Rd:75: Lost braces; missing escapes or markup?
    75 | \item \code{t_turn}: {For biphasic growth: Time of the inflection point that separates two growth phases.}
       |                      ^
checkRd: (-1) growth.gcFitLinear.Rd:76: Lost braces; missing escapes or markup?
    76 | \item \code{mumax2}: {For biphasic growth: Growth rate of the second growth phase.}
       |                      ^
checkRd: (-1) growth.gcFitLinear.Rd:77: Lost braces; missing escapes or markup?
    77 | \item \code{tD2}: {Doubling time of the second growth phase.}
       |                   ^
checkRd: (-1) growth.gcFitLinear.Rd:78: Lost braces; missing escapes or markup?
    78 | \item \code{y0_lm2}: {For biphasic growth: Intersection of the linear fit of the second growth phase with the abscissa.}
       |                      ^
checkRd: (-1) growth.gcFitLinear.Rd:79: Lost braces; missing escapes or markup?
    79 | \item \code{lag2}: {For biphasic growth: Lag time determined for the second growth phase..}
       |                    ^
checkRd: (-1) growth.gcFitLinear.Rd:80: Lost braces; missing escapes or markup?
    80 | \item \code{tmax2_start}: {For biphasic growth: Time value of the first data point within the window used for the linear regression of the second growth phase.}
       |                           ^
checkRd: (-1) growth.gcFitLinear.Rd:81: Lost braces; missing escapes or markup?
    81 | \item \code{tmax2_end}: {For biphasic growth: Time value of the last data point within the window used for the linear regression of the second growth phase.}
       |                         ^
checkRd: (-1) growth.gcFitModel.Rd:27: Lost braces; missing escapes or markup?
    27 | \item \code{A}: {Maximum growth.}
       |                 ^
checkRd: (-1) growth.gcFitModel.Rd:28: Lost braces; missing escapes or markup?
    28 | \item \code{dY}: {Difference in maximum growth and minimum growth of the fitted model.}
       |                  ^
checkRd: (-1) growth.gcFitModel.Rd:29: Lost braces; missing escapes or markup?
    29 | \item \code{mu}: {Maximum growth rate (i.e., maximum in first derivative of the spline).}
       |                  ^
checkRd: (-1) growth.gcFitModel.Rd:30: Lost braces; missing escapes or markup?
    30 | \item \code{lambda}: {Lag time.}
       |                      ^
checkRd: (-1) growth.gcFitModel.Rd:31: Lost braces; missing escapes or markup?
    31 | \item \code{b.tangent}: {Intersection of the tangent at the maximum growth rate with the abscissa.}
       |                         ^
checkRd: (-1) growth.gcFitModel.Rd:32: Lost braces; missing escapes or markup?
    32 | \item \code{fitpar}: {For some models: list of additional parameters used in the equations describing the growth curve.}
       |                      ^
checkRd: (-1) growth.gcFitModel.Rd:33: Lost braces; missing escapes or markup?
    33 | \item \code{integral}: {Area under the curve of the parametric fit.}
       |                        ^
checkRd: (-1) growth.gcFitSpline.Rd:42: Lost braces; missing escapes or markup?
    42 | \item \code{A}: {Maximum growth.}
       |                 ^
checkRd: (-1) growth.gcFitSpline.Rd:43: Lost braces; missing escapes or markup?
    43 | \item \code{dY}: {Difference in maximum growth and minimum growth.}
       |                  ^
checkRd: (-1) growth.gcFitSpline.Rd:44: Lost braces; missing escapes or markup?
    44 | \item \code{mu}: {Maximum growth rate (i.e., maximum in first derivative of the spline).}
       |                  ^
checkRd: (-1) growth.gcFitSpline.Rd:45: Lost braces; missing escapes or markup?
    45 | \item \code{tD}: {Doubling time.}
       |                  ^
checkRd: (-1) growth.gcFitSpline.Rd:46: Lost braces; missing escapes or markup?
    46 | \item \code{t.max}: {Time at the maximum growth rate.}
       |                     ^
checkRd: (-1) growth.gcFitSpline.Rd:47: Lost braces; missing escapes or markup?
    47 | \item \code{lambda}: {Lag time.}
       |                      ^
checkRd: (-1) growth.gcFitSpline.Rd:48: Lost braces; missing escapes or markup?
    48 | \item \code{b.tangent}: {Intersection of the tangent at the maximum growth rate with the abscissa.}
       |                         ^
checkRd: (-1) growth.gcFitSpline.Rd:49: Lost braces; missing escapes or markup?
    49 | \item \code{mu2}: {For biphasic growth: Growth rate of the second growth phase.}
       |                   ^
checkRd: (-1) growth.gcFitSpline.Rd:50: Lost braces; missing escapes or markup?
    50 | \item \code{tD2}: {Doubling time of the second growth phase.}
       |                   ^
checkRd: (-1) growth.gcFitSpline.Rd:51: Lost braces; missing escapes or markup?
    51 | \item \code{lambda2}: {For biphasic growth: Lag time determined for the second growth phase.}
       |                       ^
checkRd: (-1) growth.gcFitSpline.Rd:52: Lost braces; missing escapes or markup?
    52 | \item \code{t.max2}: {For biphasic growth: Time at the maximum growth rate of the second growth phase.}
       |                      ^
checkRd: (-1) growth.gcFitSpline.Rd:53: Lost braces; missing escapes or markup?
    53 | \item \code{b.tangent2}: {For biphasic growth: Intersection of the tangent at the maximum growth rate of the second growth phase with the abscissa.}
       |                          ^
checkRd: (-1) growth.gcFitSpline.Rd:54: Lost braces; missing escapes or markup?
    54 | \item \code{integral}: {Area under the curve of the spline fit.}
       |                        ^
checkRd: (-1) plot.drFit.Rd:84: Lost braces
    84 | code{plot.drFit} calls code{plot.drFitSpline} for each group used in a dose-response analysis
       |     ^
checkRd: (-1) plot.drFit.Rd:84: Lost braces
    84 | code{plot.drFit} calls code{plot.drFitSpline} for each group used in a dose-response analysis
       |                            ^
checkRd: (-1) plot.drFitSpline.Rd:78: Lost braces
    78 | code{plot.drFitSpline} generates the spline fit plot for response-parameter vs. concentration data
       |     ^
checkRd: (-1) plot.drFitfl.Rd:81: Lost braces
    81 | code{drFitfl} calls \code{\link{plot.drFitFLModel}} for each group used in a dose-response analysis with \code{dr.method = "model"}
       |     ^
checkRd: (-1) plot.gcFitSpline.Rd:93: Lost braces
    93 | code{plot.gcFitSpline} generates the spline fit plot for a single sample.
       |     ^
checkRd: (-1) plot.grid.Rd:47: Lost braces
    47 | \item{x}{A \code{grofit} or \code{flFitRes} object created with \code{\link{growth.workflow}} or code{\link{fl.workflow}} containing spline fits.}
       |                                                                                                      ^