Error(s) in re-building vignettes:
  ...
--- re-building ‘GenomeAdapt_introduction.Rmd’ using rmarkdown

 *** caught segfault ***
address 0x7f916d62a990, cause 'memory not mapped'

Traceback:
 1: SNPRelate::snpgdsGRM(genf, sample.id = sample.id, snp.id = snp.id,     autosome.only = autosome.only, remove.monosnp = remove.monosnp,     maf = maf, missing.rate = missing.rate, method = method,     num.thread = num.thread, out.fn = out.fn, out.prec = out.prec,     out.compress = out.compress, with.id = with.id, verbose = verbose)
 2: GenomeAdapt.gds(genfile = SNPRelate::snpgdsExampleFileName(),     method = "EIGMIX", num.thread = 6, autosome.only = TRUE,     remove.monosnp = TRUE, maf = 0.01, missing.rate = 0.1)
 3: eval(expr, envir, enclos)
 4: eval(expr, envir, enclos)
 5: eval_with_user_handlers(expr, envir, enclos, user_handlers)
 6: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers))
 7: withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)
 8: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler))
 9: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)))
10: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,     debug = debug, last = i == length(out), use_try = stop_on_error !=         2L, keep_warning = keep_warning, keep_message = keep_message,     log_echo = log_echo, log_warning = log_warning, output_handler = output_handler,     include_timing = include_timing)
11: evaluate::evaluate(...)
12: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options))
13: in_dir(input_dir(), expr)
14: in_input_dir(evaluate(code, envir = env, new_device = FALSE,     keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options)))
15: eng_r(options)
16: block_exec(params)
17: call_block(x)
18: process_group.block(group)
19: process_group(group)
20: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
21: withCallingHandlers(expr, error = function(e) {    loc = paste0(current_lines(), label, sprintf(" (%s)", knit_concord$get("infile")))    message(one_string(handler(e, loc)))})
22: handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)),     function(e, loc) {        setwd(wd)        write_utf8(res, output %n% stdout())        paste0("\nQuitting from lines ", loc)    }, if (labels[i] != "") sprintf(" [%s]", labels[i]))
23: process_file(text, output)
24: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
25: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     output_dir = getwd(), ...)
26: vweave_rmarkdown(...)
27: engine$weave(file, quiet = quiet, encoding = enc)
28: doTryCatch(return(expr), name, parentenv, handler)
29: tryCatchOne(expr, names, parentenv, handlers[[1L]])
30: tryCatchList(expr, classes, parentenv, handlers)
31: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
32: tools::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GenomeAdapt.Rcheck/vign_test/GenomeAdapt",     skip = TRUE, ser_elibs = "/home/hornik/tmp/scratch/RtmpYvPKcA/file23fe9c7d18a819.rds")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault