Error(s) in re-building vignettes:
  ...
--- re-building ‘germinar.Rmd’ using rmarkdown
* installing *source* package ‘bit’ ...
** package ‘bit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpazCcbw/R.INSTALL2f51c73f213cd/bit/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c attrutil.c -o attrutil.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c bit.c -o bit.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c chunkutil.c -o chunkutil.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c clone.c -o clone.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c integerutil.c -o integerutil.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c merge.c -o merge.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c rle.c -o rle.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c sort.c -o sort.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o bit.so attrutil.o bit.o chunkutil.o clone.o init.o integerutil.o merge.o rle.o sort.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpazCcbw/R.INSTALL2f51c73f213cd/bit/src'
make[1]: Entering directory '/tmp/RtmpazCcbw/R.INSTALL2f51c73f213cd/bit/src'
make[1]: Leaving directory '/tmp/RtmpazCcbw/R.INSTALL2f51c73f213cd/bit/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-bit/00new/bit/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bit)
* installing *source* package ‘clipr’ ...
** package ‘clipr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clipr)
* installing *source* package ‘tzdb’ ...
** package ‘tzdb’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpEIrbi6/R.INSTALL2fa2e035eeb246/tzdb/src'
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fpic  -g -O3 -Wall -pedantic -c api.cpp -o api.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fpic  -g -O3 -Wall -pedantic -c cpp11.cpp -o cpp11.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fpic  -g -O3 -Wall -pedantic -c names.cpp -o names.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fpic  -g -O3 -Wall -pedantic -c path.cpp -o path.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fpic  -g -O3 -Wall -pedantic -c tz.cpp -o tz.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -DINSTALL=dummy -DAUTO_DOWNLOAD=0 -DHAS_REMOTE_API=0 -DUSE_OS_TZDB=0 -DONLY_C_LOCALE=1 -fpic  -g -O3 -Wall -pedantic -c version.cpp -o version.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o tzdb.so api.o cpp11.o names.o path.o tz.o version.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpEIrbi6/R.INSTALL2fa2e035eeb246/tzdb/src'
make[1]: Entering directory '/tmp/RtmpEIrbi6/R.INSTALL2fa2e035eeb246/tzdb/src'
make[1]: Leaving directory '/tmp/RtmpEIrbi6/R.INSTALL2fa2e035eeb246/tzdb/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-tzdb/00new/tzdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tzdb)
* installing *source* package ‘prettyunits’ ...
** package ‘prettyunits’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prettyunits)
* installing *source* package ‘R.methodsS3’ ...
** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (R.methodsS3)
* installing *source* package ‘proxy’ ...
** package ‘proxy’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpVfwUtT/R.INSTALL2fea1d30a3f40/proxy/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c apply.c -o apply.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c arrayIndex.c -o arrayIndex.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c distance.c -o distance.o
distance.c:429:2: warning: add explicit braces to avoid dangling else [-Wdangling-else]
        else
        ^
distance.c:476:2: warning: add explicit braces to avoid dangling else [-Wdangling-else]
        else
        ^
2 warnings generated.
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dll.c -o dll.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c util.c -o util.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o proxy.so apply.o arrayIndex.o distance.o dll.o util.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpVfwUtT/R.INSTALL2fea1d30a3f40/proxy/src'
make[1]: Entering directory '/tmp/RtmpVfwUtT/R.INSTALL2fea1d30a3f40/proxy/src'
make[1]: Leaving directory '/tmp/RtmpVfwUtT/R.INSTALL2fea1d30a3f40/proxy/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-proxy/00new/proxy/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (proxy)
* installing *source* package ‘forcats’ ...
** package ‘forcats’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (forcats)
* installing *source* package ‘hms’ ...
** package ‘hms’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hms)
* installing *source* package ‘rprojroot’ ...
** package ‘rprojroot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rprojroot)
* installing *source* package ‘rematch2’ ...
** package ‘rematch2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rematch2)
* installing *source* package ‘backports’ ...
** package ‘backports’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpsgMzo9/R.INSTALL2feeb626fa3c65/backports/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dotsElt.c -o dotsElt.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dotsLength.c -o dotsLength.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dotsNames.c -o dotsNames.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o backports.so dotsElt.o dotsLength.o dotsNames.o init.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpsgMzo9/R.INSTALL2feeb626fa3c65/backports/src'
make[1]: Entering directory '/tmp/RtmpsgMzo9/R.INSTALL2feeb626fa3c65/backports/src'
make[1]: Leaving directory '/tmp/RtmpsgMzo9/R.INSTALL2feeb626fa3c65/backports/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-backports/00new/backports/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (backports)
* installing *source* package ‘brio’ ...
** package ‘brio’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmprBMS96/R.INSTALL2ff0cc3754e73d/brio/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c brio.c -o brio.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c file_line_endings.c -o file_line_endings.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c read_file.c -o read_file.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c read_file_raw.c -o read_file_raw.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c read_lines.c -o read_lines.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c write_file.c -o write_file.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c write_file_raw.c -o write_file_raw.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c write_lines.c -o write_lines.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_file_raw.o write_lines.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmprBMS96/R.INSTALL2ff0cc3754e73d/brio/src'
make[1]: Entering directory '/tmp/RtmprBMS96/R.INSTALL2ff0cc3754e73d/brio/src'
make[1]: Leaving directory '/tmp/RtmprBMS96/R.INSTALL2ff0cc3754e73d/brio/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-brio/00new/brio/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (brio)
* installing *source* package ‘praise’ ...
** package ‘praise’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (praise)
* installing *source* package ‘ps’ ...
** package ‘ps’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpIs1xd6/R.INSTALL2ff49768bd453a/ps/src'
clang-16 -g -O3 -Wall -pedantic -Wl,-O1 -Wall px.c -o px
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c api-common.c -o api-common.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c common.c -o common.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c extra.c -o extra.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dummy.c -o dummy.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c error-codes.c -o error-codes.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c posix.c -o posix.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c api-posix.c -o api-posix.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c linux.c -o linux.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c api-linux.c -o api-linux.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpIs1xd6/R.INSTALL2ff49768bd453a/ps/src'
make[1]: Entering directory '/tmp/RtmpIs1xd6/R.INSTALL2ff49768bd453a/ps/src'
make[1]: Leaving directory '/tmp/RtmpIs1xd6/R.INSTALL2ff49768bd453a/ps/src'
installing via 'install.libs.R' to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-ps/00new/ps
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ps)
* installing *source* package ‘rstudioapi’ ...
** package ‘rstudioapi’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rstudioapi)
* installing *source* package ‘SparseM’ ...
** package ‘SparseM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-4) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpp2SBfH/R.INSTALL2ffa915c42657c/SparseM/src'
gfortran  -fpic  -g -O2 -Wall -mtune=native -c bckslv.f -o bckslv.o
bckslv.f:55:5:

   55 |   100 continue
      |     1
Warning: Label 100 at (1) defined but not used [-Wunused-label]
bckslv.f:126:5:

  126 |   100 continue
      |     1
Warning: Label 100 at (1) defined but not used [-Wunused-label]
bckslv.f:185:5:

  185 |   100 continue
      |     1
Warning: Label 100 at (1) defined but not used [-Wunused-label]
bckslv.f:2:65:

    2 |      &                   xlnz,invp,perm,xsuper,newrhs,sol,b,timed)
      |                                                                 1
Warning: Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
bckslv.f:71:64:

   71 |      &                  xlnz,invp,perm,xsuper,newrhs,sol,b,timed)
      |                                                                1
Warning: Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
bckslv.f:134:64:

  134 |      &                  xlnz,invp,perm,xsuper,newrhs,sol,b,timed)
      |                                                                1
Warning: Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
gfortran  -fpic  -g -O2 -Wall -mtune=native -c chol.f -o chol.o
chol.f:4:52:

    4 |      &                tmpvec,cachsz,level,ierr,timed)
      |                                                    1
Warning: Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
gfortran  -fpic  -g -O2 -Wall -mtune=native -c chol2csr.f -o chol2csr.o
gfortran  -fpic  -g -O2 -Wall -mtune=native -c cholesky.f -o cholesky.o
f951: Warning: Nonconforming tab character in column 1 of line 560 [-Wtabs]
cholesky.f:2948:72:

 2948 |                          IF  ( NODE )  400, 900, 500
      |                                                                        1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
cholesky.f:2982:72:

 2982 |                  IF  ( RNODE )  1100, 1800, 1200
      |                                                                        1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
cholesky.f:3299:72:

 3299 |                      IF  ( ENODE )  400, 800, 500
      |                                                                        1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
cholesky.f:3356:72:

 3356 |                              IF  ( NODE )  1000, 2100, 1100
      |                                                                        1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
cholesky.f:3430:72:

 3430 |                                          IF  ( NODE )  1700, 2000, 1800
      |                                                                        1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
cholesky.f:1972:20:

 1972 |             CACHE = ( FLOAT(CACHSZ) * 1024. / 8. ) * 0.9
      |                    1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
cholesky.f:5590:34:

 5590 |      &                      NOFSUB, XLINDX, LINDX , XLNZ  , MRGLNK,
      |                                  1
Warning: Unused dummy argument ‘nofsub’ at (1) [-Wunused-dummy-argument]
cholesky.f:2271:49:

 2271 |       SUBROUTINE  FSUP2  (  NEQNS , NSUPER, ETPAR , SNODE , XSUPER  )
      |                                                 1
Warning: Unused dummy argument ‘etpar’ at (1) [-Wunused-dummy-argument]
cholesky.f:1198:50:

 1198 |       SUBROUTINE  CHORDR (  NEQNS , XADJ  , ADJNCY, PERM  , INVP  ,
      |                                                  1
Warning: Unused dummy argument ‘adjncy’ at (1) [-Wunused-dummy-argument]
cholesky.f:1198:40:

 1198 |       SUBROUTINE  CHORDR (  NEQNS , XADJ  , ADJNCY, PERM  , INVP  ,
      |                                        1
Warning: Unused dummy argument ‘xadj’ at (1) [-Wunused-dummy-argument]
cholesky.f:3078:46:

 3078 |       SUBROUTINE  MMDINT ( NEQNS, XADJ, ADJNCY, DHEAD, DFORW,
      |                                              1
Warning: Unused dummy argument ‘adjncy’ at (1) [-Wunused-dummy-argument]
cholesky.f:4810:62:

 4810 |       SUBROUTINE  PCHOL  ( M, N, XPNT, X, MXDIAG, NTINY, IFLAG, SMXPY )
      |                                                              1
Warning: Unused dummy argument ‘iflag’ at (1) [-Wunused-dummy-argument]
cholesky.f:2575:33:

 2575 |       SUBROUTINE  INPNV  (  NEQNS, XADJF, ADJF, ANZF, PERM, INVP,
      |                                 1
Warning: Unused dummy argument ‘neqns’ at (1) [-Wunused-dummy-argument]
cholesky.f:2777:57:

 2777 |       SUBROUTINE  LSTATS (  NSUPER, XSUPER, XLINDX, LINDX , XLNZ  ,
      |                                                         1
Warning: Unused dummy argument ‘lindx’ at (1) [-Wunused-dummy-argument]
cholesky.f:2778:42:

 2778 |      &                      TMPSIZ, OUTUNT                          )
      |                                          1
Warning: Unused dummy argument ‘outunt’ at (1) [-Wunused-dummy-argument]
cholesky.f:2778:34:

 2778 |      &                      TMPSIZ, OUTUNT                          )
      |                                  1
Warning: Unused dummy argument ‘tmpsiz’ at (1) [-Wunused-dummy-argument]
cholesky.f:72:72:

   72 |             YOFF1 = IY1 - ICOL
      |                                                                        ^
Warning: ‘iy1’ may be used uninitialized [-Wmaybe-uninitialized]
cholesky.f:55:55:

   55 |         INTEGER             ICOL  , IL1   , IR    , IY1   , LBOT1 ,
      |                                                       ^
note: ‘iy1’ was declared here
cholesky.f:511:72:

  511 |                     NXTSUP = SNODE(NXTCOL)
      |                                                                        ^
Warning: ‘nxtcol’ may be used uninitialized [-Wmaybe-uninitialized]
cholesky.f:306:42:

  306 |      &                      NXKSUP, NXTCOL, NXTSUP, STORE
      |                                          ^
note: ‘nxtcol’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c csr.f -o csr.o
csr.f:33:26:

   33 |       subroutine nzero (ra,ja,ia,nrow,ncol,nnz,nz,rao,jao,iao,colmn)
      |                          1
Warning: Unused dummy argument ‘ra’ at (1) [-Wunused-dummy-argument]
gfortran  -fpic  -g -O2 -Wall -mtune=native -c extract.f -o extract.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
gfortran  -fpic  -g -O2 -Wall -mtune=native -c sparskit.f -o sparskit.o
f951: Warning: Nonconforming tab character in column 1 of line 589 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 590 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 608 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 609 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 627 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 628 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 646 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 647 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 929 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 930 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 931 [-Wtabs]
f951: Warning: Nonconforming tab character in column 5 of line 946 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 949 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1038 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1131 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1592 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1687 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1808 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1815 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1818 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1819 [-Wtabs]
sparskit.f:93:19:

   93 |  200     continue
      |                         1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:98:16:

   98 |  100  continue
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:239:11:

  239 |       tmp       = ix(init)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:250:12:

  250 |       tmp1        = ix(ii)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:252:12:

  252 |       next        = perm(ii)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:271:11:

  271 |       tmp       = ix(init)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:272:10:

  272 |       ii        = perm(init)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:314:11:

  314 |       tmp       = x(init)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:325:12:

  325 |       tmp1        = x(ii)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:327:12:

  327 |       next        = perm(ii)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:346:11:

  346 |       tmp       = x(init)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:347:10:

  347 |       ii        = perm(init)
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:1820:19:

 1820 |  3       continue
      |                         1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:1873:19:

 1873 |  3       continue
      |                         1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:2014:16:

 2014 |  6    k = k+1
      |                 1       
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:2314:14:

 2314 |       return
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:2459:3:

 2459 |  72      iao(i) = kold+1
      |   1
Warning: Label 72 at (1) defined but not used [-Wunused-label]
sparskit.f:2022:72:

 2022 |       if (values) a(ipos)  = t
      |                                                                        ^
Warning: ‘t’ may be used uninitialized [-Wmaybe-uninitialized]
sparskit.f:1987:25:

 1987 |       double precision  t,tnext
      |                         ^
note: ‘t’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c subscr.f -o subscr.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o SparseM.so bckslv.o chol.o chol2csr.o cholesky.o csr.o extract.o init.o sparskit.o subscr.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpp2SBfH/R.INSTALL2ffa915c42657c/SparseM/src'
make[1]: Entering directory '/tmp/Rtmpp2SBfH/R.INSTALL2ffa915c42657c/SparseM/src'
make[1]: Leaving directory '/tmp/Rtmpp2SBfH/R.INSTALL2ffa915c42657c/SparseM/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-SparseM/00new/SparseM/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘diag’ from package ‘base’ in package ‘SparseM’
Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘SparseM’
Creating a generic function for ‘norm’ from package ‘base’ in package ‘SparseM’
Creating a new generic function for ‘backsolve’ in package ‘SparseM’
Creating a generic function for ‘forwardsolve’ from package ‘base’ in package ‘SparseM’
Creating a generic function for ‘model.response’ from package ‘stats’ in package ‘SparseM’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SparseM)
* installing *source* package ‘MatrixModels’ ...
** package ‘MatrixModels’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MatrixModels)
* installing *source* package ‘combinat’ ...
** package ‘combinat’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (combinat)
* installing *source* package ‘carData’ ...
** package ‘carData’ successfully unpacked and MD5 sums checked
** using staged installation
** data
*** moving datasets to lazyload DB
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (carData)
* installing *source* package ‘abind’ ...
** package ‘abind’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (abind)
* installing *source* package ‘lazyeval’ ...
** package ‘lazyeval’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/Rtmpc92FTi/R.INSTALL30065620ecbdaa/lazyeval/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c expr.c -o expr.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c interp.c -o interp.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c lazy.c -o lazy.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c name.c -o name.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c utils.c -o utils.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpc92FTi/R.INSTALL30065620ecbdaa/lazyeval/src'
make[1]: Entering directory '/tmp/Rtmpc92FTi/R.INSTALL30065620ecbdaa/lazyeval/src'
make[1]: Leaving directory '/tmp/Rtmpc92FTi/R.INSTALL30065620ecbdaa/lazyeval/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-lazyeval/00new/lazyeval/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lazyeval)
* installing *source* package ‘xtable’ ...
** package ‘xtable’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xtable)
* installing *source* package ‘sourcetools’ ...
** package ‘sourcetools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/Rtmp6NwhsC/R.INSTALL300cae7abc7d7e/sourcetools/src'
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Reader.cpp -o Reader.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Tokenizer.cpp -o Tokenizer.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c sourcetools-init.c -o sourcetools-init.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp6NwhsC/R.INSTALL300cae7abc7d7e/sourcetools/src'
make[1]: Entering directory '/tmp/Rtmp6NwhsC/R.INSTALL300cae7abc7d7e/sourcetools/src'
make[1]: Leaving directory '/tmp/Rtmp6NwhsC/R.INSTALL300cae7abc7d7e/sourcetools/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-sourcetools/00new/sourcetools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sourcetools)
* installing *source* package ‘later’ ...
** package ‘later’ successfully unpacked and MD5 sums checked
** using staged installation
Running configure script
-latomic linker flag not needed.
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmphK4Ein/R.INSTALL3011ca7b0f8718/later/src'
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c callback_registry.cpp -o callback_registry.o
In file included from callback_registry.cpp:6:
In file included from ./callback_registry.h:10:
In file included from ./threadutils.h:8:
In file included from ./tinycthread.h:32:
./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
#define thread_local        THREADS_H_ERROR
        ^
1 warning generated.
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c debug.cpp -o debug.o
debug.cpp:31:11: warning: variable 'res' set but not used [-Wunused-but-set-variable]
  ssize_t res = write(STDERR_FILENO, buf, n);
          ^
1 warning generated.
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c later.cpp -o later.o
In file included from later.cpp:1:
In file included from ./later.h:6:
In file included from ./callback_registry.h:10:
In file included from ./threadutils.h:8:
In file included from ./tinycthread.h:32:
./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
#define thread_local        THREADS_H_ERROR
        ^
1 warning generated.
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c later_posix.cpp -o later_posix.o
In file included from later_posix.cpp:9:
In file included from ./later.h:6:
In file included from ./callback_registry.h:10:
In file included from ./threadutils.h:8:
In file included from ./tinycthread.h:32:
./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
#define thread_local        THREADS_H_ERROR
        ^
later_posix.cpp:247:13: warning: unused variable 'ret' [-Wunused-variable]
    ssize_t ret = write(dummy_pipe_in, "a", 1);
            ^
2 warnings generated.
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c later_win32.cpp -o later_win32.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c timer_posix.cpp -o timer_posix.o
In file included from timer_posix.cpp:6:
In file included from ./timer_posix.h:8:
In file included from ./threadutils.h:8:
In file included from ./tinycthread.h:32:
./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
#define thread_local        THREADS_H_ERROR
        ^
1 warning generated.
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c timestamp_unix.cpp -o timestamp_unix.o
In file included from timestamp_unix.cpp:5:
In file included from ./timeconv.h:9:
In file included from ./tinycthread.h:32:
./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
#define thread_local        THREADS_H_ERROR
        ^
1 warning generated.
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c timestamp_win32.cpp -o timestamp_win32.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c tinycthread.c -o tinycthread.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o later.so RcppExports.o callback_registry.o debug.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o -pthread -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmphK4Ein/R.INSTALL3011ca7b0f8718/later/src'
make[1]: Entering directory '/tmp/RtmphK4Ein/R.INSTALL3011ca7b0f8718/later/src'
make[1]: Leaving directory '/tmp/RtmphK4Ein/R.INSTALL3011ca7b0f8718/later/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-later/00new/later/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (later)
* installing *source* package ‘crayon’ ...
** package ‘crayon’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (crayon)
* installing *source* package ‘commonmark’ ...
** package ‘commonmark’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpVjyfVL/R.INSTALL304ba774f1bbce/commonmark/src'
rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c extensions.c -o extensions.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c wrapper.c -o wrapper.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/cmark.c -o cmark/cmark.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/node.c -o cmark/node.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/iterator.c -o cmark/iterator.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/blocks.c -o cmark/blocks.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/inlines.c -o cmark/inlines.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/scanners.c -o cmark/scanners.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/utf8.c -o cmark/utf8.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/buffer.c -o cmark/buffer.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/references.c -o cmark/references.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/render.c -o cmark/render.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/man.c -o cmark/man.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/xml.c -o cmark/xml.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/html.c -o cmark/html.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/commonmark.c -o cmark/commonmark.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/latex.c -o cmark/latex.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/arena.c -o cmark/arena.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/linked_list.c -o cmark/linked_list.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/plugin.c -o cmark/plugin.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/registry.c -o cmark/registry.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/syntax_extension.c -o cmark/syntax_extension.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/plaintext.c -o cmark/plaintext.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/footnotes.c -o cmark/footnotes.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c cmark/map.c -o cmark/map.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c extensions/autolink.c -o extensions/autolink.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c extensions/core-extensions.c -o extensions/core-extensions.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c extensions/ext_scanners.c -o extensions/ext_scanners.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c extensions/strikethrough.c -o extensions/strikethrough.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c extensions/table.c -o extensions/table.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c extensions/tagfilter.c -o extensions/tagfilter.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c extensions/tasklist.c -o extensions/tasklist.o
ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpVjyfVL/R.INSTALL304ba774f1bbce/commonmark/src'
make[1]: Entering directory '/tmp/RtmpVjyfVL/R.INSTALL304ba774f1bbce/commonmark/src'
make[1]: Leaving directory '/tmp/RtmpVjyfVL/R.INSTALL304ba774f1bbce/commonmark/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-commonmark/00new/commonmark/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (commonmark)
* installing *source* package ‘minqa’ ...
** package ‘minqa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-4) 13.2.0’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpBrAagl/R.INSTALL3062284cdb65f0/minqa/src'
gfortran  -fpic  -g -O2 -Wall -mtune=native -c altmov.f -o altmov.o
altmov.f:42:72:

   42 |    10 HCOL(K)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
altmov.f:45:72:

   45 |       DO 20 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
altmov.f:46:72:

   46 |    20 HCOL(K)=HCOL(K)+TEMP*ZMAT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
altmov.f:53:72:

   53 |    30 GLAG(I)=BMAT(KNEW,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
altmov.f:57:72:

   57 |    40 TEMP=TEMP+XPT(K,J)*XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
altmov.f:59:72:

   59 |       DO 50 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1)
altmov.f:60:72:

   60 |    50 GLAG(I)=GLAG(I)+TEMP*XPT(K,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
altmov.f:76:72:

   76 |    60 DISTSQ=DISTSQ+TEMP*TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
altmov.f:173:72:

  173 |    90 XNEW(I)=DMAX1(SL(I),DMIN1(SU(I),TEMP))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1)
altmov.f:238:72:

  238 |   140 GW=GW+GLAG(I)*W(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1)
altmov.f:249:72:

  249 |   150 TEMP=TEMP+XPT(K,J)*W(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
altmov.f:250:72:

  250 |   160 CURV=CURV+HCOL(K)*TEMP*TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1)
altmov.f:256:72:

  256 |   170     XALT(I)=DMAX1(SL(I),DMIN1(SU(I),TEMP))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1)
altmov.f:269:72:

  269 |   180     W(N+I)=XALT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
altmov.f:276:72:

  276 |   190     XALT(I)=W(N+I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1)
altmov.f:162:14:

  162 |           KSAV=K
      |              ^
Warning: ‘ksav’ may be used uninitialized [-Wmaybe-uninitialized]
altmov.f:172:72:

  172 |       TEMP=XOPT(I)+STPSAV*(XPT(KSAV,I)-XOPT(I))
      |                                                                        ^
Warning: ‘stpsav’ may be used uninitialized [-Wmaybe-uninitialized]
altmov.f:163:16:

  163 |           STPSAV=STEP
      |                ^
note: ‘stpsav’ was declared here
altmov.f:229:72:

  229 |           W(I)=-STEP*GLAG(I)
      |                                                                        ^
Warning: ‘step’ may be used uninitialized [-Wmaybe-uninitialized]
altmov.f:113:14:

  113 |           STEP=SLBD
      |              ^
note: ‘step’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c bigden.f -o bigden.o
bigden.f:45:72:

   45 |    10 W(N+K)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
bigden.f:49:72:

   49 |       DO 20 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
bigden.f:50:72:

   50 |    20 W(N+K)=W(N+K)+TEMP*ZMAT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
bigden.f:67:72:

   67 |    30 XOPTSQ=XOPTSQ+XOPT(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
bigden.f:78:72:

   78 |    40         SSTEMP=SSTEMP+DIFF*DIFF
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
bigden.f:88:72:

   88 |    60     S(I)=XPT(KSAV,I)-XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
bigden.f:104:72:

  104 |    80 XOPTS=XOPTS+XOPT(I)*S(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1)
bigden.f:116:72:

  116 |    90 DEN(I)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1)
bigden.f:127:72:

  127 |   100 TEMPC=TEMPC+XPT(K,I)*XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1)
bigden.f:132:72:

  132 |   110 WVEC(K,5)=HALF*TEMPA*TEMPB
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1)
bigden.f:139:72:

  139 |   120 WVEC(IP,5)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1)
bigden.f:147:72:

  147 |   130 PROD(K,JC)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1)
bigden.f:151:72:

  151 |   140 SUM=SUM+ZMAT(K,J)*WVEC(K,JC)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1)
bigden.f:153:72:

  153 |       DO 150 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 150 at (1)
bigden.f:154:72:

  154 |   150 PROD(K,JC)=PROD(K,JC)+SUM*ZMAT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
bigden.f:159:72:

  159 |   160     SUM=SUM+BMAT(K,J)*WVEC(NPT+J,JC)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1)
bigden.f:160:72:

  160 |   170     PROD(K,JC)=PROD(K,JC)+SUM
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1)
bigden.f:162:72:

  162 |       DO 190 J=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 190 at (1)
bigden.f:165:72:

  165 |   180 SUM=SUM+BMAT(I,J)*WVEC(I,JC)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
bigden.f:166:72:

  166 |   190 PROD(NPT+J,JC)=SUM
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1)
bigden.f:174:72:

  174 |   200 SUM=SUM+PAR(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1)
bigden.f:193:72:

  193 |   210 DEN(9)=DEN(9)-HALF*TEMPA
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1)
bigden.f:200:72:

  200 |   220 SUM=SUM+PAR(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1)
bigden.f:234:72:

  234 |   230 PAR(J+1)=PAR(2)*PAR(J-1)+PAR(3)*PAR(J-2)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 230 at (1)
bigden.f:238:72:

  238 |   240 SUM=SUM+DENEX(J)*PAR(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1)
bigden.f:264:72:

  264 |   260 PAR(J+1)=PAR(2)*PAR(J-1)+PAR(3)*PAR(J-2)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1)
bigden.f:269:72:

  269 |   270 DENMAX=DENMAX+DENEX(J)*PAR(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1)
bigden.f:272:72:

  272 |       DO 280 J=1,5
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 280 at (1)
bigden.f:273:72:

  273 |   280 VLAG(K)=VLAG(K)+PROD(K,J)*PAR(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1)
bigden.f:283:72:

  283 |   290 TEMPB=TEMPB+W(I)*W(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 290 at (1)
bigden.f:294:72:

  294 |   300 S(I)=TAU*BMAT(KNEW,I)+ALPHA*TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1)
bigden.f:298:72:

  298 |   310 SUM=SUM+XPT(K,J)*W(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1)
bigden.f:300:72:

  300 |       DO 320 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 320 at (1)
bigden.f:301:72:

  301 |   320 S(I)=S(I)+TEMP*XPT(K,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 320 at (1)
bigden.f:306:72:

  306 |   330 DS=DS+D(I)*S(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 330 at (1)
bigden.f:314:72:

  314 |       DO 350 J=1,5
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 350 at (1)
bigden.f:315:72:

  315 |   350 W(K)=W(K)+WVEC(K,J)*PAR(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 350 at (1)
gfortran  -fpic  -g -O2 -Wall -mtune=native -c biglag.f -o biglag.o
biglag.f:38:72:

   38 |    10 HCOL(K)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
biglag.f:42:72:

   42 |       DO 20 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
biglag.f:43:72:

   43 |    20 HCOL(K)=HCOL(K)+TEMP*ZMAT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
biglag.f:54:72:

   54 |    30 DD=DD+D(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
biglag.f:60:72:

   60 |    40 SUM=SUM+XPT(K,J)*D(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
biglag.f:63:72:

   63 |       DO 50 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1)
biglag.f:65:72:

   65 |    50 GD(I)=GD(I)+SUM*XPT(K,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
biglag.f:76:72:

   76 |    60 DHD=DHD+D(I)*GD(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
biglag.f:86:72:

   86 |    70 S(I)=GC(I)+TEMP*GD(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1)
biglag.f:99:72:

   99 |    90 SS=SS+S(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1)
biglag.f:105:72:

  105 |   100 W(I)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1)
biglag.f:113:72:

  113 |   110 SUM=SUM+XPT(K,J)*S(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1)
biglag.f:115:72:

  115 |       DO 120 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 120 at (1)
biglag.f:116:72:

  116 |   120 W(I)=W(I)+SUM*XPT(K,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1)
biglag.f:127:72:

  127 |   130 CF5=CF5+S(I)*GD(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1)
biglag.f:151:72:

  151 |   140 TAUOLD=TAU
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1)
biglag.f:170:72:

  170 |   150 S(I)=GC(I)+GD(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
gfortran  -fpic  -g -O2 -Wall -mtune=native -c bobyqa.f -o bobyqa.o
gfortran  -fpic  -g -O2 -Wall -mtune=native -c bobyqb.f -o bobyqb.o
bobyqb.f:68:72:

   68 |    10 XOPTSQ=XOPTSQ+XOPT(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
bobyqb.f:97:72:

   97 |           DO 30 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1)
bobyqb.f:100:72:

  100 |    30     GOPT(I)=GOPT(I)+HQ(IH)*XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
bobyqb.f:105:72:

  105 |    40         TEMP=TEMP+XPT(K,J)*XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
bobyqb.f:107:72:

  107 |               DO 50 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1)
bobyqb.f:108:72:

  108 |    50         GOPT(I)=GOPT(I)+TEMP*XPT(K,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
bobyqb.f:145:72:

  145 |    70         CURV=CURV+PQ(K)*XPT(K,J)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1)
bobyqb.f:167:72:

  167 |   100     SUM=SUM+XPT(K,I)*XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1)
bobyqb.f:170:72:

  170 |           DO 110 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 110 at (1)
bobyqb.f:174:72:

  174 |           DO 110 J=1,I
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 110 at (1)
bobyqb.f:175:72:

  175 |   110     BMAT(IP,J)=BMAT(IP,J)+W(I)*VLAG(J)+VLAG(I)*W(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1)
bobyqb.f:185:72:

  185 |   120     SUMW=SUMW+VLAG(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1)
bobyqb.f:189:72:

  189 |   130     SUM=SUM+VLAG(K)*XPT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1)
bobyqb.f:191:72:

  191 |           DO 140 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 140 at (1)
bobyqb.f:192:72:

  192 |   140     BMAT(K,J)=BMAT(K,J)+SUM*ZMAT(K,JJ)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1)
bobyqb.f:193:72:

  193 |           DO 150 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 150 at (1)
bobyqb.f:196:72:

  196 |           DO 150 J=1,I
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 150 at (1)
bobyqb.f:197:72:

  197 |   150     BMAT(IP,J)=BMAT(IP,J)+TEMP*W(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
bobyqb.f:207:72:

  207 |   160     XPT(K,J)=XPT(K,J)-XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1)
bobyqb.f:208:72:

  208 |           DO 170 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 170 at (1)
bobyqb.f:211:72:

  211 |   170     BMAT(NPT+I,J)=BMAT(NPT+J,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1)
bobyqb.f:217:72:

  217 |   180     XOPT(I)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
bobyqb.f:246:72:

  246 |   200     XOPTSQ=XOPTSQ+XOPT(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1)
bobyqb.f:278:72:

  278 |   220 D(I)=XNEW(I)-XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1)
bobyqb.f:291:72:

  291 |   240 SUM=SUM+BMAT(K,J)*D(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1)
bobyqb.f:294:72:

  294 |   250 W(NPT+K)=SUMA
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1)
bobyqb.f:299:72:

  299 |   260 SUM=SUM+ZMAT(K,JJ)*W(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1)
bobyqb.f:301:72:

  301 |       DO 270 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 270 at (1)
bobyqb.f:302:72:

  302 |   270 VLAG(K)=VLAG(K)+SUM*ZMAT(K,JJ)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1)
bobyqb.f:310:72:

  310 |   280 SUM=SUM+W(K)*BMAT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1)
bobyqb.f:314:72:

  314 |   290 SUM=SUM+BMAT(JP,I)*D(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 290 at (1)
bobyqb.f:317:72:

  317 |   300 DX=DX+D(J)*XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1)
bobyqb.f:330:72:

  330 |   310         D(I)=XNEW(I)-XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1)
bobyqb.f:361:72:

  361 |   330     HDIAG=HDIAG+ZMAT(K,JJ)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 330 at (1)
bobyqb.f:365:72:

  365 |   340     DISTSQ=DISTSQ+(XPT(K,J)-XOPT(J))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 340 at (1)
bobyqb.f:428:72:

  428 |       DO 410 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 410 at (1)
bobyqb.f:432:72:

  432 |   410 VQUAD=VQUAD+HQ(IH)*TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 410 at (1)
bobyqb.f:434:72:

  434 |   420 VQUAD=VQUAD+HALF*PQ(K)*W(NPT+K)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 420 at (1)
bobyqb.f:476:72:

  476 |   440         HDIAG=HDIAG+ZMAT(K,JJ)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 440 at (1)
bobyqb.f:480:72:

  480 |   450         DISTSQ=DISTSQ+(XPT(K,J)-XNEW(J))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 450 at (1)
bobyqb.f:487:72:

  487 |   460         BIGLSQ=DMAX1(BIGLSQ,TEMP*VLAG(K)**2)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 460 at (1)
bobyqb.f:504:72:

  504 |       DO 470 J=1,I
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 470 at (1)
bobyqb.f:506:72:

  506 |   470 HQ(IH)=HQ(IH)+TEMP*XPT(KNEW,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 470 at (1)
bobyqb.f:509:72:

  509 |       DO 480 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 480 at (1)
bobyqb.f:510:72:

  510 |   480 PQ(K)=PQ(K)+TEMP*ZMAT(K,JJ)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 480 at (1)
bobyqb.f:518:72:

  518 |   490 W(I)=BMAT(KNEW,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 490 at (1)
bobyqb.f:522:72:

  522 |   500 SUMA=SUMA+ZMAT(KNEW,JJ)*ZMAT(K,JJ)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 500 at (1)
bobyqb.f:525:72:

  525 |   510 SUMB=SUMB+XPT(K,J)*XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 510 at (1)
bobyqb.f:527:72:

  527 |       DO 520 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 520 at (1)
bobyqb.f:528:72:

  528 |   520 W(I)=W(I)+TEMP*XPT(K,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 520 at (1)
bobyqb.f:530:72:

  530 |   530 GOPT(I)=GOPT(I)+DIFF*W(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 530 at (1)
bobyqb.f:541:72:

  541 |           DO 540 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 540 at (1)
bobyqb.f:544:72:

  544 |   540     GOPT(I)=GOPT(I)+HQ(IH)*D(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 540 at (1)
bobyqb.f:548:72:

  548 |   550     TEMP=TEMP+XPT(K,J)*D(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 550 at (1)
bobyqb.f:550:72:

  550 |           DO 560 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 560 at (1)
bobyqb.f:551:72:

  551 |   560     GOPT(I)=GOPT(I)+TEMP*XPT(K,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 560 at (1)
bobyqb.f:561:72:

  561 |   570     W(K)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 570 at (1)
bobyqb.f:565:72:

  565 |   580     SUM=SUM+ZMAT(K,J)*VLAG(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 580 at (1)
bobyqb.f:566:72:

  566 |           DO 590 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 590 at (1)
bobyqb.f:567:72:

  567 |   590     W(K)=W(K)+SUM*ZMAT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 590 at (1)
bobyqb.f:571:72:

  571 |   600     SUM=SUM+XPT(K,J)*XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 600 at (1)
bobyqb.f:573:72:

  573 |   610     W(K)=SUM*W(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 610 at (1)
bobyqb.f:579:72:

  579 |   620     SUM=SUM+BMAT(K,I)*VLAG(K)+XPT(K,I)*W(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 620 at (1)
bobyqb.f:590:72:

  590 |   630     VLAG(NPT+I)=SUM
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 630 at (1)
bobyqb.f:622:72:

  622 |   660 SUM=SUM+(XPT(K,J)-XOPT(J))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 660 at (1)
bobyqb.f:133:72:

  133 |           ERRBIG=DMAX1(DIFFA,DIFFB,DIFFC)
      |                                                                        ^
Warning: ‘diffc’ may be used uninitialized [-Wmaybe-uninitialized]
bobyqb.f:133:40:

  133 |           ERRBIG=DMAX1(DIFFA,DIFFB,DIFFC)
      |                                        ^
note: ‘diffc’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c lagmax.f -o lagmax.o
lagmax.f:36:72:

   36 |    10 SUM=SUM+H(I,J)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
lagmax.f:43:72:

   43 |    30 V(J)=H(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
lagmax.f:56:72:

   56 |    40 D(I)=D(I)+H(I,J)*V(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
lagmax.f:58:72:

   58 |    50 DSQ=DSQ+D(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
lagmax.f:64:72:

   64 |    60     WSQ=WSQ+D(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
lagmax.f:70:72:

   70 |    70     TEMP=TEMP+H(I,J)*D(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1)
lagmax.f:72:72:

   72 |    80     V(I)=RATIO*V(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1)
lagmax.f:78:72:

   78 |    90     D(I)=VHW*V(I)+TEMP*D(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1)
lagmax.f:94:72:

   94 |   100 SUM=SUM+H(I,J)*D(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1)
lagmax.f:95:72:

   95 |   110 DHD=DHD+SUM*D(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1)
lagmax.f:102:72:

  102 |   120 D(I)=SCALE*D(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1)
lagmax.f:122:72:

  122 |   130 SUMV=SUMV+H(I,J)*V(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1)
lagmax.f:125:72:

  125 |   140 VHV=VHV+SUMV*V(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1)
lagmax.f:147:72:

  147 |   150 V(I)=TEMPC*V(I)-TEMPD*G(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
lagmax.f:168:72:

  168 |   160 D(I)=TEMPD*D(I)+TEMPV*V(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1)
lagmax.f:39:11:

   39 |           K=I
      |           ^
Warning: ‘k’ may be used uninitialized [-Wmaybe-uninitialized]
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c minqa.cpp -o minqa.o
gfortran  -fpic  -g -O2 -Wall -mtune=native -c newuoa.f -o newuoa.o
gfortran  -fpic  -g -O2 -Wall -mtune=native -c newuob.f -o newuob.o
newuob.f:49:72:

   49 |    10 XPT(K,J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
newuob.f:50:72:

   50 |       DO 20 I=1,NDIM
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
newuob.f:51:72:

   51 |    20 BMAT(I,J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
newuob.f:53:72:

   53 |    30 HQ(IH)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
newuob.f:56:72:

   56 |       DO 40 J=1,NPTM
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1)
newuob.f:57:72:

   57 |    40 ZMAT(K,J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
newuob.f:98:72:

   98 |    60 X(J)=XPT(NF,J)+XBASE(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
newuob.f:159:72:

  159 |    80 XOPTSQ=XOPTSQ+XOPT(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1)
newuob.f:170:72:

  170 |   110 DSQ=DSQ+D(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1)
newuob.f:191:72:

  191 |   130     SUM=SUM+XPT(K,I)*XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1)
newuob.f:195:72:

  195 |           DO 140 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 140 at (1)
newuob.f:201:72:

  201 |           DO 140 J=1,I
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 140 at (1)
newuob.f:202:72:

  202 |   140     BMAT(IP,J)=BMAT(IP,J)+VLAG(I)*W(J)+W(I)*VLAG(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1)
newuob.f:210:72:

  210 |   150     W(I)=W(NPT+I)*ZMAT(I,K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
newuob.f:214:72:

  214 |   160     SUM=SUM+W(I)*XPT(I,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1)
newuob.f:217:72:

  217 |           DO 170 I=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 170 at (1)
newuob.f:218:72:

  218 |   170     BMAT(I,J)=BMAT(I,J)+SUM*ZMAT(I,K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1)
newuob.f:219:72:

  219 |           DO 180 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 180 at (1)
newuob.f:223:72:

  223 |           DO 180 J=1,I
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 180 at (1)
newuob.f:224:72:

  224 |   180     BMAT(IP,J)=BMAT(IP,J)+TEMP*VLAG(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
newuob.f:234:72:

  234 |   190     XPT(K,J)=XPT(K,J)-HALF*XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1)
newuob.f:235:72:

  235 |           DO 200 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 200 at (1)
newuob.f:240:72:

  240 |   200     BMAT(NPT+I,J)=BMAT(NPT+J,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1)
newuob.f:243:72:

  243 |   210     XOPT(J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1)
newuob.f:266:72:

  266 |   220 SUM=SUM+BMAT(K,J)*D(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1)
newuob.f:268:72:

  268 |   230 VLAG(K)=SUM
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 230 at (1)
newuob.f:273:72:

  273 |   240 SUM=SUM+ZMAT(I,K)*W(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1)
newuob.f:280:72:

  280 |       DO 250 I=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 250 at (1)
newuob.f:281:72:

  281 |   250 VLAG(I)=VLAG(I)+SUM*ZMAT(I,K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1)
newuob.f:287:72:

  287 |   260 SUM=SUM+W(I)*BMAT(I,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1)
newuob.f:291:72:

  291 |   270 SUM=SUM+BMAT(JP,K)*D(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1)
newuob.f:294:72:

  294 |   280 DX=DX+D(J)*XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1)
newuob.f:314:72:

  314 |   300 X(I)=XBASE(I)+XNEW(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1)
newuob.f:343:72:

  343 |       DO 340 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 340 at (1)
newuob.f:347:72:

  347 |   340 VQUAD=VQUAD+TEMP*HQ(IH)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 340 at (1)
newuob.f:349:72:

  349 |   350 VQUAD=VQUAD+PQ(K)*W(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 350 at (1)
newuob.f:366:72:

  366 |   360     XOPTSQ=XOPTSQ+XOPT(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 360 at (1)
newuob.f:405:72:

  405 |   380 HDIAG=HDIAG+TEMP*ZMAT(K,J)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 380 at (1)
newuob.f:409:72:

  409 |   390 DISTSQ=DISTSQ+(XPT(K,J)-XOPT(J))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 390 at (1)
newuob.f:427:72:

  427 |       DO 420 J=1,I
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 420 at (1)
newuob.f:429:72:

  429 |   420 HQ(IH)=HQ(IH)+TEMP*XPT(KNEW,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 420 at (1)
newuob.f:438:72:

  438 |       DO 440 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 440 at (1)
newuob.f:439:72:

  439 |   440 PQ(K)=PQ(K)+TEMP*ZMAT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 440 at (1)
newuob.f:444:72:

  444 |   450 XPT(KNEW,I)=XNEW(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 450 at (1)
newuob.f:455:72:

  455 |   700         VLAG(K)=FVAL(K)-FVAL(KOPT)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 700 at (1)
newuob.f:460:72:

  460 |   710         SUM=SUM+BMAT(K,I)*VLAG(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 710 at (1)
newuob.f:462:72:

  462 |   720         W(I)=SUM
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 720 at (1)
newuob.f:471:72:

  471 |   730             GQ(I)=W(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 730 at (1)
newuob.f:473:72:

  473 |   740             HQ(IH)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 740 at (1)
newuob.f:477:72:

  477 |   750             W(J)=W(J)+VLAG(K)*ZMAT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 750 at (1)
newuob.f:478:72:

  478 |   760             IF (J .LT. IDZ) W(J)=-W(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 760 at (1)
newuob.f:481:72:

  481 |                   DO 770 J=1,NPTM
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 770 at (1)
newuob.f:482:72:

  482 |   770             PQ(K)=PQ(K)+ZMAT(K,J)*W(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 770 at (1)
newuob.f:504:72:

  504 |   470 SUM=SUM+(XPT(K,J)-XOPT(J))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 470 at (1)
newuob.f:556:72:

  556 |   540     X(I)=XBASE(I)+XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 540 at (1)
newuob.f:138:14:

  138 |           IF (XIPT .LT. ZERO) IPT=IPT+N
      |              ^
Warning: ‘xipt’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:85:14:

   85 |           XIPT=RHOBEG
      |              ^
note: ‘xipt’ was declared here
newuob.f:139:14:

  139 |           IF (XJPT .LT. ZERO) JPT=JPT+N
      |              ^
Warning: ‘xjpt’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:87:14:

   87 |           XJPT=RHOBEG
      |              ^
note: ‘xjpt’ was declared here
newuob.f:354:10:

  354 |       IF (DNORM .GT. RHO) NFSAV=NF
      |          ^
Warning: ‘dnorm’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:171:11:

  171 |       DNORM=DMIN1(DELTA,DSQRT(DSQ))
      |           ^
note: ‘dnorm’ was declared here
newuob.f:137:72:

  137 |           IH=(IPT*(IPT-1))/2+JPT
      |                                                                        ^
Warning: ‘ipt’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:79:13:

   79 |           IPT=JPT+ITEMP
      |             ^
note: ‘ipt’ was declared here
newuob.f:467:72:

  467 |               ITEST=ITEST+1
      |                                                                        ^
Warning: ‘itest’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:155:11:

  155 |       ITEST=0
      |           ^
note: ‘itest’ was declared here
newuob.f:137:72:

  137 |           IH=(IPT*(IPT-1))/2+JPT
      |                                                                        ^
Warning: ‘jpt’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:78:13:

   78 |           JPT=NFM-ITEMP*N-N
      |             ^
note: ‘jpt’ was declared here
newuob.f:451:14:

  451 |           IF (DABS(RATIO) .GT. 1.0D-2) THEN
      |              ^
Warning: ‘ratio’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:175:15:

  175 |           RATIO=-1.0D0
      |               ^
note: ‘ratio’ was declared here
newuob.f:144:72:

  144 |           HQ(IH)=(FBEG-FVAL(IPT+1)-FVAL(JPT+1)+F)/(XIPT*XJPT)
      |                                                                        ^
Warning: ‘fbeg’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:102:14:

  102 |           FBEG=F
      |              ^
note: ‘fbeg’ was declared here
newuob.f:179:14:

  179 |           IF (TEMP .LE. DMAX1(DIFFA,DIFFB,DIFFC)) GOTO 460
      |              ^
Warning: ‘diffa’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:153:11:

  153 |       DIFFA=ZERO
      |           ^
note: ‘diffa’ was declared here
newuob.f:179:14:

  179 |           IF (TEMP .LE. DMAX1(DIFFA,DIFFB,DIFFC)) GOTO 460
      |              ^
Warning: ‘diffc’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:179:47:

  179 |           IF (TEMP .LE. DMAX1(DIFFA,DIFFB,DIFFC)) GOTO 460
      |                                               ^
note: ‘diffc’ was declared here
newuob.f:177:14:

  177 |           IF (NF .LE. NFSAV+2) GOTO 460
      |              ^
Warning: ‘nfsav’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:160:11:

  160 |    90 NFSAV=NF
      |           ^
note: ‘nfsav’ was declared here
newuob.f:186:10:

  186 |   120 IF (DSQ .LE. 1.0D-3*XOPTSQ) THEN
      |          ^
Warning: ‘xoptsq’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:156:12:

  156 |       XOPTSQ=ZERO
      |            ^
note: ‘xoptsq’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c prelim.f -o prelim.o
prelim.f:39:72:

   39 |    10 XPT(K,J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
prelim.f:40:72:

   40 |       DO 20 I=1,NDIM
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
prelim.f:41:72:

   41 |    20 BMAT(I,J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
prelim.f:43:72:

   43 |    30 HQ(IH)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
prelim.f:46:72:

   46 |       DO 40 J=1,NPT-NP
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1)
prelim.f:47:72:

   47 |    40 ZMAT(K,J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
prelim.f:121:72:

  121 |               TEMP=(F-FBEG)/STEPB
      |                                                                        ^
Warning: ‘fbeg’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:99:14:

   99 |           FBEG=F
      |              ^
note: ‘fbeg’ was declared here
prelim.f:146:72:

  146 |           IH=(IPT*(IPT-1))/2+JPT
      |                                                                        ^
Warning: ‘ipt’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:72:13:

   72 |           IPT=JPT+ITEMP
      |             ^
note: ‘ipt’ was declared here
prelim.f:151:72:

  151 |           TEMP=XPT(NF,IPT)*XPT(NF,JPT)
      |                                                                        ^
Warning: ‘jpt’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:71:13:

   71 |           JPT=NFM-ITEMP*N-N
      |             ^
note: ‘jpt’ was declared here
prelim.f:125:18:

  125 |               IF (STEPA*STEPB .LT. ZERO) THEN
      |                  ^
Warning: ‘stepa’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:59:19:

   59 |               STEPA=RHOBEG
      |                   ^
note: ‘stepa’ was declared here
prelim.f:125:18:

  125 |               IF (STEPA*STEPB .LT. ZERO) THEN
      |                  ^
Warning: ‘stepb’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:64:19:

   64 |               STEPB=-RHOBEG
      |                   ^
note: ‘stepb’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c rescue.f -o rescue.o
rescue.f:66:72:

   66 |    10 DISTSQ=DISTSQ+XPT(K,J)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
rescue.f:70:72:

   70 |       DO 20 J=1,NPTM
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
rescue.f:71:72:

   71 |    20 ZMAT(K,J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
rescue.f:80:72:

   80 |    30 W(J)=W(J)+PQ(K)*XPT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
rescue.f:81:72:

   81 |       DO 40 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1)
rescue.f:83:72:

   83 |    40 HQ(IH)=HQ(IH)+W(I)*XOPT(J)+W(J)*XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
rescue.f:103:72:

  103 |       DO 50 I=1,NDIM
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1)
rescue.f:104:72:

  104 |    50 BMAT(I,J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
rescue.f:145:72:

  145 |    70     ZMAT(K,K-NP)=TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1)
rescue.f:157:72:

  157 |    90 BMAT(KNEW,J)=TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1)
rescue.f:161:72:

  161 |   100 ZMAT(KNEW,J)=TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1)
rescue.f:180:72:

  180 |  110         W(NDIM+K)=DABS(W(NDIM+K))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1)
rescue.f:201:72:

  201 |   140 W(NPT+J)=XPT(KNEW,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1)
rescue.f:208:72:

  208 |   150     SUM=SUM+W(NPT+J)*XPT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
rescue.f:219:72:

  219 |   160 W(K)=HALF*SUM*SUM
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1)
rescue.f:227:72:

  227 |   170 SUM=SUM+BMAT(K,J)*W(NPT+J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1)
rescue.f:228:72:

  228 |   180 VLAG(K)=SUM
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
rescue.f:233:72:

  233 |   190 SUM=SUM+ZMAT(K,J)*W(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1)
rescue.f:235:72:

  235 |       DO 200 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 200 at (1)
rescue.f:236:72:

  236 |   200 VLAG(K)=VLAG(K)+SUM*ZMAT(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1)
rescue.f:242:72:

  242 |   210 SUM=SUM+BMAT(K,J)*W(K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1)
rescue.f:246:72:

  246 |   220 SUM=SUM+BMAT(IP,J)*W(IP)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1)
rescue.f:249:72:

  249 |   230 DISTSQ=DISTSQ+XPT(KNEW,J)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 230 at (1)
rescue.f:264:72:

  264 |   240     HDIAG=HDIAG+ZMAT(K,J)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1)
rescue.f:271:72:

  271 |   250 VLMXSQ=DMAX1(VLMXSQ,VLAG(K)**2)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1)
rescue.f:297:72:

  297 |       DO 270 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 270 at (1)
rescue.f:299:72:

  299 |   270 HQ(IH)=HQ(IH)+TEMP*W(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1)
rescue.f:332:72:

  332 |   280 VQUAD=VQUAD+HALF*PQ(K)*TEMP*TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1)
rescue.f:359:72:

  359 |   310 GOPT(I)=GOPT(I)+DIFF*BMAT(KPT,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1)
rescue.f:363:72:

  363 |   320 SUM=SUM+ZMAT(K,J)*ZMAT(KPT,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 320 at (1)
rescue.f:136:13:

  136 |           IW=(DBLE(K-NP)-HALF)/DBLE(N)
      |             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:210:13:

  210 |           IP=PTSID(K)
      |             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:212:13:

  212 |           IQ=DBLE(NP)*PTSID(K)-DBLE(IP*NP)
      |             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:301:9:

  301 |       IP=PTSID(KPT)
      |         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:302:9:

  302 |       IQ=DBLE(NP)*PTSID(KPT)-DBLE(IP*NP)
      |         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:368:13:

  368 |           IP=PTSID(K)
      |             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:369:13:

  369 |           IQ=DBLE(NP)*PTSID(K)-DBLE(IP*NP)
      |             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
gfortran  -fpic  -g -O2 -Wall -mtune=native -c trsapp.f -o trsapp.o
trsapp.f:33:72:

   33 |    10 D(I)=XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
trsapp.f:45:72:

   45 |    30 DD=DD+D(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
trsapp.f:61:72:

   61 |    60 DHD=DHD+D(J)*HD(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
trsapp.f:82:72:

   82 |    70 GG=GG+(G(I)+HS(I))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1)
trsapp.f:98:72:

   98 |    80     SS=SS+STEP(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1)
trsapp.f:112:72:

  112 |   100 SHS=SHS+STEP(I)*HS(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1)
trsapp.f:125:72:

  125 |   110 D(I)=TEMPA*(G(I)+HS(I))-TEMPB*STEP(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1)
trsapp.f:133:72:

  133 |   130 DHS=DHS+HD(I)*STEP(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1)
trsapp.f:156:72:

  156 |   140 QSAV=QNEW
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1)
trsapp.f:176:72:

  176 |   150 GG=GG+(G(I)+HS(I))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
trsapp.f:188:72:

  188 |   180 HD(I)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
trsapp.f:192:72:

  192 |   190 TEMP=TEMP+XPT(K,J)*D(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1)
trsapp.f:194:72:

  194 |       DO 200 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 200 at (1)
trsapp.f:195:72:

  195 |   200 HD(I)=HD(I)+TEMP*XPT(K,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1)
trsapp.f:198:72:

  198 |       DO 210 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 210 at (1)
trsapp.f:201:72:

  201 |   210 HD(I)=HD(I)+HQ(IH)*D(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1)
trsapp.f:70:72:

   70 |           ALPHA=DMIN1(ALPHA,GG/DHD)
      |                                                                        ^
Warning: ‘bstep’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:57:11:

   57 |       BSTEP=TEMP/(DS+DSQRT(DS*DS+DD*TEMP))
      |           ^
note: ‘bstep’ was declared here
trsapp.f:67:72:

   67 |           TEMP=DHD/DD
      |                                                                        ^
Warning: ‘dd’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:39:8:

   39 |       DD=ZERO
      |        ^
note: ‘dd’ was declared here
trsapp.f:70:72:

   70 |           ALPHA=DMIN1(ALPHA,GG/DHD)
      |                                                                        ^
Warning: ‘gg’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:50:8:

   50 |       GG=DD
      |        ^
note: ‘gg’ was declared here
trsapp.f:88:14:

   88 |           IF (GG .LE. 1.0D-4*GGBEG) GOTO 160
      |              ^
Warning: ‘ggbeg’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:51:11:

   51 |       GGBEG=GG
      |           ^
note: ‘ggbeg’ was declared here
trsapp.f:73:72:

   73 |       QRED=QRED+QADD
      |                                                                        ^
Warning: ‘qred’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:38:10:

   38 |    20 QRED=ZERO
      |          ^
note: ‘qred’ was declared here
trsapp.f:138:72:

  138 |       QBEG=SG+CF
      |                                                                        ^
Warning: ‘sg’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:108:8:

  108 |       SG=ZERO
      |        ^
note: ‘sg’ was declared here
trsapp.f:137:72:

  137 |       CF=HALF*(SHS-DHD)
      |                                                                        ^
Warning: ‘shs’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:109:9:

  109 |       SHS=ZERO
      |         ^
note: ‘shs’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c trsbox.f -o trsbox.o
trsbox.f:71:72:

   71 |    10 GNEW(I)=GOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
trsbox.f:92:72:

   92 |    40 STEPSQ=STEPSQ+S(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
trsbox.f:163:72:

  163 |    80     D(I)=D(I)+STPLEN*S(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1)
trsbox.f:304:72:

  304 |   170 REDSAV=REDNEW
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1)
trsbox.f:333:72:

  333 |   180 HRED(I)=CTH*HRED(I)+STH*HS(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
trsbox.f:351:72:

  351 |   200 DSQ=DSQ+D(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1)
trsbox.f:362:72:

  362 |       DO 220 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 220 at (1)
trsbox.f:365:72:

  365 |   220 HS(I)=HS(I)+HQ(IH)*S(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1)
trsbox.f:370:72:

  370 |   230     TEMP=TEMP+XPT(K,J)*S(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 230 at (1)
trsbox.f:373:72:

  373 |   240     HS(I)=HS(I)+TEMP*XPT(K,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1)
trsbox.f:379:72:

  379 |   260 HRED(I)=HS(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1)
trsbox.f:291:9:

  291 |       IU=17.0D0*ANGBD+3.1D0
      |         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
trsbox.f:291:72:

  291 |       IU=17.0D0*ANGBD+3.1D0
      |                                                                        ^
Warning: ‘angbd’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:232:11:

  232 |       ANGBD=ONE
      |           ^
note: ‘angbd’ was declared here
trsbox.f:296:72:

  296 |       REDNEW=STH*(ANGT*DREDG-SREDG-HALF*STH*TEMP)
      |                                                                        ^
Warning: ‘dredg’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:196:11:

  196 |       DREDG=ZERO
      |           ^
note: ‘dredg’ was declared here
trsbox.f:215:72:

  215 |       TEMP=GREDSQ*DREDSQ-DREDG*DREDG
      |                                                                        ^
Warning: ‘dredsq’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:195:12:

  195 |       DREDSQ=ZERO
      |            ^
note: ‘dredsq’ was declared here
trsbox.f:335:27:

  335 |       IF (IACT .GT. 0 .AND. ISAV .EQ. IU) THEN
      |                           ^
Warning: ‘iact’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:132:10:

  132 |       IACT=0
      |          ^
note: ‘iact’ was declared here
trsbox.f:377:10:

  377 |       IF (ITERC .GT. ITCSAV) GOTO 150
      |          ^
Warning: ‘itcsav’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:208:12:

  208 |       ITCSAV=ITERC
      |            ^
note: ‘itcsav’ was declared here
trsbox.f:296:72:

  296 |       REDNEW=STH*(ANGT*DREDG-SREDG-HALF*STH*TEMP)
      |                                                                        ^
Warning: ‘sredg’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:225:11:

  225 |       SREDG=-TEMP
      |           ^
note: ‘sredg’ was declared here
trsbox.f:337:72:

  337 |           XBDI(IACT)=XSAV
      |                                                                        ^
Warning: ‘xsav’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:255:22:

  255 |                   XSAV=ONEMIN
      |                      ^
note: ‘xsav’ was declared here
trsbox.f:185:72:

  185 |           BETA=GREDSQ/GGSAV
      |                                                                        ^
Warning: ‘ggsav’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:158:15:

  158 |           GGSAV=GREDSQ
      |               ^
note: ‘ggsav’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c trstep.f -o trstep.o
trstep.f:41:72:

   41 |       DO 10 J=1,I
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1)
trstep.f:42:72:

   42 |    10 H(I,J)=H(J,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
trstep.f:55:72:

   55 |    20     SUM=SUM+H(I,K)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
trstep.f:68:72:

   68 |    30     Z(I)=TD(I)*W(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
trstep.f:74:72:

   74 |    40     Z(J)=Z(J)+H(I,J)*W(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
trstep.f:75:72:

   75 |    50     WZ=WZ+W(J)*Z(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
trstep.f:82:72:

   82 |    60         H(I,J)=H(I,J)-W(I)*Z(J)-W(J)*(Z(I)-WZ*W(I))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
trstep.f:93:72:

   93 |    90 GSQ=GSQ+G(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1)
trstep.f:99:72:

   99 |   100 SUM=SUM+GG(I)*H(I,K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1)
trstep.f:100:72:

  100 |       DO 110 I=KP,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 110 at (1)
trstep.f:101:72:

  101 |   110 GG(I)=GG(I)-SUM*H(I,K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1)
trstep.f:112:72:

  112 |   120 TDMIN=DMIN1(TDMIN,TD(I))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1)
trstep.f:117:72:

  117 |   130     D(I)=-SCALE*GG(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1)
trstep.f:187:72:

  187 |   180     D(I)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
trstep.f:200:72:

  200 |   200     DTG=DTG+D(I)*GG(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1)
trstep.f:203:72:

  203 |   210     D(I)=SCALE*D(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1)
trstep.f:222:72:

  222 |   240 W(I)=(-GG(I)-TN(I-1)*W(I-1))/PIV(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1)
trstep.f:225:72:

  225 |   250 D(I)=W(I)-TN(I)*D(I+1)/PIV(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1)
trstep.f:233:72:

  233 |   260 WSQ=WSQ+PIV(I)*W(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1)
trstep.f:244:72:

  244 |   270     D(I)=SCALE*D(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1)
trstep.f:276:72:

  276 |   280     W(I)=(DSIGN(ONE,TEMP)+TEMP)/PIV(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1)
trstep.f:279:72:

  279 |   290     Z(I)=W(I)-TN(I)*Z(I+1)/PIV(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 290 at (1)
trstep.f:286:72:

  286 |   300     DTZ=DTZ+D(I)*Z(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1)
trstep.f:296:72:

  296 |   310         D(I)=D(I)+GAM*Z(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1)
trstep.f:327:72:

  327 |   330 SHFMAX=DMIN1(SHFMAX,PIVOT)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 330 at (1)
trstep.f:371:72:

  371 |   380 SUM=SUM+D(I)*H(I,K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 380 at (1)
trstep.f:372:72:

  372 |       DO 390 I=KP,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 390 at (1)
trstep.f:373:72:

  373 |   390 D(I)=D(I)-SUM*H(I,K)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 390 at (1)
trstep.f:255:18:

  255 |               IF (PHI .LE. PHIL) GOTO 370
      |                  ^
Warning: ‘phil’ may be used uninitialized [-Wmaybe-uninitialized]
trstep.f:255:31:

  255 |               IF (PHI .LE. PHIL) GOTO 370
      |                               ^
note: ‘phil’ was declared here
trstep.f:306:14:

  306 |           IF (PHI .GE. PHIU) GOTO 370
      |              ^
Warning: ‘phiu’ may be used uninitialized [-Wmaybe-uninitialized]
trstep.f:260:41:

  260 |           IF (PARU .GT. ZERO) SLOPE=(PHIU-PHI)/(PARU-PAR)
      |                                         ^
note: ‘phiu’ was declared here
trstep.f:347:18:

  347 |               IF (PIVKSV .EQ. ZERO) GOTO 360
      |                  ^
Warning: ‘pivksv’ may be used uninitialized [-Wmaybe-uninitialized]
trstep.f:347:24:

  347 |               IF (PIVKSV .EQ. ZERO) GOTO 360
      |                        ^
note: ‘pivksv’ was declared here
trstep.f:201:72:

  201 |           SCALE=-DSIGN(DELTA/DSQRT(DSQ),DTG)
      |                                                                        ^
Warning: ‘dsq’ may be used uninitialized [-Wmaybe-uninitialized]
trstep.f:166:13:

  166 |           DSQ=ONE
      |             ^
note: ‘dsq’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c uobyqa.f -o uobyqa.o
gfortran  -fpic  -g -O2 -Wall -mtune=native -c uobyqb.f -o uobyqb.o
uobyqb.f:49:72:

   49 |       DO 10 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1)
uobyqb.f:50:72:

   50 |    10 XPT(K,I)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
uobyqb.f:52:72:

   52 |       DO 20 J=1,NPTM
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
uobyqb.f:53:72:

   53 |    20 PL(K,J)=ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
uobyqb.f:61:72:

   61 |    40 X(I)=XBASE(I)+XPT(NF+1,I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
uobyqb.f:173:72:

  173 |       DO 80 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1)
uobyqb.f:177:72:

  177 |    80 H(I,J)=PQ(IH)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1)
uobyqb.f:187:72:

  187 |    90 TEMP=TEMP+D(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1)
uobyqb.f:201:72:

  201 |  110     X(I)=XBASE(I)+XNEW(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1)
uobyqb.f:230:72:

  230 |       DO 150 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 150 at (1)
uobyqb.f:234:72:

  234 |   150 VQUAD=VQUAD+W(IH)*PQ(IH)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
uobyqb.f:238:72:

  238 |   160 TEMP=TEMP+W(J)*PL(K,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1)
uobyqb.f:239:72:

  239 |   170 VLAG(K)=TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1)
uobyqb.f:250:72:

  250 |   180 TEMP=TEMP+(XPT(K,I)-XNEW(I))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
uobyqb.f:252:72:

  252 |   190 SUM=SUM+DABS(TEMP*TEMP*TEMP*VLAG(K))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1)
uobyqb.f:262:72:

  262 |   200     XOPT(I)=XNEW(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1)
uobyqb.f:298:72:

  298 |   220 SUM=SUM+(XPT(K,I)-XOPT(I))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1)
uobyqb.f:313:72:

  313 |   250 XPT(KNEW,I)=XNEW(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1)
uobyqb.f:317:72:

  317 |   260 PQ(J)=PQ(J)+DIFF*PL(KNEW,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1)
uobyqb.f:322:72:

  322 |   270     PL(K,J)=PL(K,J)-TEMP*PL(KNEW,J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1)
uobyqb.f:343:72:

  343 |       DO 300 I=1,N
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 300 at (1)
uobyqb.f:344:72:

  344 |   300 W(K)=W(K)+(XPT(K,I)-XOPT(I))**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1)
uobyqb.f:371:72:

  371 |   330     H(I,J)=TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 330 at (1)
uobyqb.f:372:72:

  372 |   340     SUMH=SUMH+HALF*TEMP*TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 340 at (1)
uobyqb.f:382:72:

  382 |   350         SUMG=SUMG+G(I)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 350 at (1)
uobyqb.f:409:72:

  409 |   360     XPT(K,J)=XPT(K,J)-XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 360 at (1)
uobyqb.f:410:72:

  410 |           DO 380 I=1,J
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 380 at (1)
uobyqb.f:416:72:

  416 |   370         PL(K,J)=PL(K,J)+PL(K,IH)*XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 370 at (1)
uobyqb.f:418:72:

  418 |           DO 380 K=1,NPT
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 380 at (1)
uobyqb.f:419:72:

  419 |   380     PL(K,I)=PL(K,I)+PL(K,IH)*XOPT(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 380 at (1)
uobyqb.f:453:72:

  453 |   430     X(I)=XBASE(I)+XOPT(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 430 at (1)
uobyqb.f:283:72:

  283 |           DELTA=DMAX1(DELTA,1.25D0*DNORM,DNORM+RHO)
      |                                                                        ^
Warning: ‘dnorm’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:188:11:

  188 |       DNORM=DMIN1(DELTA,DSQRT(TEMP))
      |           ^
note: ‘dnorm’ was declared here
uobyqb.f:113:18:

  113 |               IF (F .LT. FBASE) THEN
      |                  ^
Warning: ‘fbase’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:66:15:

   66 |           FBASE=F
      |               ^
note: ‘fbase’ was declared here
uobyqb.f:93:72:

   93 |                       D(J)=(FBASE+F-TWO*FSAVE)/RHOSQ
      |                                                                        ^
Warning: ‘fsave’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:86:33:

   86 |                       D(J)=(FSAVE+F-TWO*FBASE)/RHOSQ
      |                                 ^
note: ‘fsave’ was declared here
uobyqb.f:129:72:

  129 |       IH=IH+1
      |                                                                        ^
Warning: ‘ih’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:69:12:

   69 |           IH=N
      |            ^
note: ‘ih’ was declared here
uobyqb.f:81:72:

   81 |           JSWITCH=-JSWITCH
      |                                                                        ^
Warning: ‘jswitch’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:68:17:

   68 |           JSWITCH=-1
      |                 ^
note: ‘jswitch’ was declared here
uobyqb.f:220:10:

  220 |       IF (KNEW .EQ. -1) GOTO 420
      |          ^
Warning: ‘knew’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:168:10:

  168 |    70 KNEW=0
      |          ^
note: ‘knew’ was declared here
uobyqb.f:240:72:

  240 |       VLAG(KOPT)=VLAG(KOPT)+ONE
      |                                                                        ^
Warning: ‘kopt’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:65:14:

   65 |           KOPT=NF
      |              ^
note: ‘kopt’ was declared here
uobyqb.f:253:72:

  253 |       SIXTHM=DMAX1(SIXTHM,DABS(DIFF)/SUM)
      |                                                                        ^
Warning: ‘sixthm’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:161:12:

  161 |       SIXTHM=ZERO
      |            ^
note: ‘sixthm’ was declared here
uobyqb.f:336:10:

  336 |       IF (DDKNEW .GT. TWORSQ) GOTO 70
      |          ^
Warning: ‘tworsq’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:163:12:

  163 |    60 TWORSQ=(TWO*RHO)**2
      |            ^
note: ‘tworsq’ was declared here
uobyqb.f:336:10:

  336 |       IF (DDKNEW .GT. TWORSQ) GOTO 70
      |          ^
Warning: ‘ddknew’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:303:16:

  303 |           DDKNEW=SUM
      |                ^
note: ‘ddknew’ was declared here
uobyqb.f:131:72:

  131 |           TEMP=ONE/(W(IP)*W(IQ))
      |                                                                        ^
Warning: ‘ip’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:126:12:

  126 |           IP=1
      |            ^
note: ‘ip’ was declared here
uobyqb.f:131:72:

  131 |           TEMP=ONE/(W(IP)*W(IQ))
      |                                                                        ^
Warning: ‘iq’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:127:12:

  127 |           IQ=2
      |            ^
note: ‘iq’ was declared here
uobyqb.f:378:14:

  378 |           IF (ERRTOL .GT. ZERO) THEN
      |              ^
Warning: ‘errtol’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:189:12:

  189 |       ERRTOL=-ONE
      |            ^
note: ‘errtol’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c update.f -o update.o
update.f:30:72:

   30 |    10     ZMAT(I,JL)=TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
update.f:61:72:

   61 |    40     ZMAT(I,1)=TEMPA*ZMAT(I,1)-TEMPB*VLAG(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
update.f:79:72:

   79 |    50     ZMAT(I,JB)=SCALB*(ZMAT(I,JB)-TEMPA*W(I)-TEMPB*VLAG(I))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
update.f:94:72:

   94 |    60     ZMAT(I,IDZ)=TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
update.f:104:72:

  104 |       DO 70 I=1,JP
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 70 at (1)
update.f:43:72:

   43 |       IF (JL .GT. 1) W(I)=W(I)+TEMPB*ZMAT(I,JL)
      |                                                                        ^
Warning: ‘tempb’ may be used uninitialized [-Wmaybe-uninitialized]
update.f:26:15:

   26 |           TEMPB=ZMAT(KNEW,J)/TEMP
      |               ^
note: ‘tempb’ was declared here
gfortran  -fpic  -g -O2 -Wall -mtune=native -c updatebobyqa.f -o updatebobyqa.o
updatebobyqa.f:22:72:

   22 |       DO 10 J=1,NPTM
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1)
updatebobyqa.f:23:72:

   23 |    10 ZTEST=DMAX1(ZTEST,DABS(ZMAT(K,J)))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
updatebobyqa.f:37:72:

   37 |    20     ZMAT(I,1)=TEMP
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
updatebobyqa.f:58:72:

   58 |    50 ZMAT(I,1)=TEMPA*ZMAT(I,1)-TEMPB*VLAG(I)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
updatebobyqa.f:67:72:

   67 |       DO 60 I=1,JP
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 60 at (1)
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o minqa.so altmov.o bigden.o biglag.o bobyqa.o bobyqb.o lagmax.o minqa.o newuoa.o newuob.o prelim.o rescue.o trsapp.o trsbox.o trstep.o uobyqa.o uobyqb.o update.o updatebobyqa.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpBrAagl/R.INSTALL3062284cdb65f0/minqa/src'
make[1]: Entering directory '/tmp/RtmpBrAagl/R.INSTALL3062284cdb65f0/minqa/src'
make[1]: Leaving directory '/tmp/RtmpBrAagl/R.INSTALL3062284cdb65f0/minqa/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-minqa/00new/minqa/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (minqa)
* installing *source* package ‘RcppEigen’ ...
** package ‘RcppEigen’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmppsXbcb/R.INSTALL3083fa7cb35603/RcppEigen/src'
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c RcppEigen.cpp -o RcppEigen.o
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:1:
In file included from ../inst/include/Eigen/Core:540:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:2:
In file included from ../inst/include/Eigen/LU:47:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:3:
In file included from ../inst/include/Eigen/Cholesky:12:
In file included from ../inst/include/Eigen/Jacobi:29:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:3:
In file included from ../inst/include/Eigen/Cholesky:43:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:4:
In file included from ../inst/include/Eigen/QR:15:
In file included from ../inst/include/Eigen/Householder:27:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:4:
In file included from ../inst/include/Eigen/QR:48:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:5:
In file included from ../inst/include/Eigen/SVD:48:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:6:
In file included from ../inst/include/Eigen/Geometry:58:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:7:
In file included from ../inst/include/Eigen/Eigenvalues:58:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:26:
In file included from ../inst/include/Eigen/SparseCore:61:
../inst/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:26:
In file included from ../inst/include/Eigen/SparseCore:66:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:27:
In file included from ../inst/include/Eigen/OrderingMethods:71:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:29:
In file included from ../inst/include/Eigen/SparseCholesky:43:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:31:
In file included from ../inst/include/Eigen/SparseLU:33:
../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:32:
In file included from ../inst/include/Eigen/SparseQR:34:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:33:
In file included from ../inst/include/Eigen/IterativeLinearSolvers:46:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:32:
In file included from ../inst/include/Eigen/CholmodSupport:45:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:35:
In file included from ../inst/include/unsupported/Eigen/KroneckerProduct:34:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:39:
In file included from ../inst/include/unsupported/Eigen/Polynomials:135:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:40:
In file included from ../inst/include/unsupported/Eigen/SparseExtra:44:
../inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from RcppEigen.cpp:22:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:40:
In file included from ../inst/include/unsupported/Eigen/SparseExtra:51:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
22 warnings generated.
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:1:
In file included from ../inst/include/Eigen/Core:540:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:2:
In file included from ../inst/include/Eigen/LU:47:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:3:
In file included from ../inst/include/Eigen/Cholesky:12:
In file included from ../inst/include/Eigen/Jacobi:29:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:3:
In file included from ../inst/include/Eigen/Cholesky:43:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:4:
In file included from ../inst/include/Eigen/QR:15:
In file included from ../inst/include/Eigen/Householder:27:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:4:
In file included from ../inst/include/Eigen/QR:48:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:5:
In file included from ../inst/include/Eigen/SVD:48:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:6:
In file included from ../inst/include/Eigen/Geometry:58:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:7:
In file included from ../inst/include/Eigen/Eigenvalues:58:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:26:
In file included from ../inst/include/Eigen/SparseCore:61:
../inst/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:26:
In file included from ../inst/include/Eigen/SparseCore:66:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:27:
In file included from ../inst/include/Eigen/OrderingMethods:71:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:29:
In file included from ../inst/include/Eigen/SparseCholesky:43:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:31:
In file included from ../inst/include/Eigen/SparseLU:33:
../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:32:
In file included from ../inst/include/Eigen/SparseQR:34:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:33:
In file included from ../inst/include/Eigen/IterativeLinearSolvers:46:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:32:
In file included from ../inst/include/Eigen/CholmodSupport:45:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:35:
In file included from ../inst/include/unsupported/Eigen/KroneckerProduct:34:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:39:
In file included from ../inst/include/unsupported/Eigen/Polynomials:135:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:40:
In file included from ../inst/include/unsupported/Eigen/SparseExtra:44:
../inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:40:
In file included from ../inst/include/unsupported/Eigen/SparseExtra:51:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
22 warnings generated.
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c fastLm.cpp -o fastLm.o
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:1:
In file included from ../inst/include/Eigen/Core:540:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:2:
In file included from ../inst/include/Eigen/LU:47:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:3:
In file included from ../inst/include/Eigen/Cholesky:12:
In file included from ../inst/include/Eigen/Jacobi:29:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:3:
In file included from ../inst/include/Eigen/Cholesky:43:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:4:
In file included from ../inst/include/Eigen/QR:15:
In file included from ../inst/include/Eigen/Householder:27:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:4:
In file included from ../inst/include/Eigen/QR:48:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:5:
In file included from ../inst/include/Eigen/SVD:48:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:6:
In file included from ../inst/include/Eigen/Geometry:58:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:30:
In file included from ../inst/include/Eigen/Dense:7:
In file included from ../inst/include/Eigen/Eigenvalues:58:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:26:
In file included from ../inst/include/Eigen/SparseCore:61:
../inst/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:26:
In file included from ../inst/include/Eigen/SparseCore:66:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:27:
In file included from ../inst/include/Eigen/OrderingMethods:71:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:29:
In file included from ../inst/include/Eigen/SparseCholesky:43:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:31:
In file included from ../inst/include/Eigen/SparseLU:33:
../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:32:
In file included from ../inst/include/Eigen/SparseQR:34:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:31:
In file included from ../inst/include/Eigen/Sparse:33:
In file included from ../inst/include/Eigen/IterativeLinearSolvers:46:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:32:
In file included from ../inst/include/Eigen/CholmodSupport:45:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:35:
In file included from ../inst/include/unsupported/Eigen/KroneckerProduct:34:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:39:
In file included from ../inst/include/unsupported/Eigen/Polynomials:135:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:40:
In file included from ../inst/include/unsupported/Eigen/SparseExtra:44:
../inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from fastLm.cpp:23:
In file included from ./fastLm.h:25:
In file included from ../inst/include/RcppEigen.h:25:
In file included from ../inst/include/RcppEigenForward.h:40:
In file included from ../inst/include/unsupported/Eigen/SparseExtra:51:
../inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
22 warnings generated.
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o init.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmppsXbcb/R.INSTALL3083fa7cb35603/RcppEigen/src'
make[1]: Entering directory '/tmp/RtmppsXbcb/R.INSTALL3083fa7cb35603/RcppEigen/src'
make[1]: Leaving directory '/tmp/RtmppsXbcb/R.INSTALL3083fa7cb35603/RcppEigen/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-RcppEigen/00new/RcppEigen/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppEigen)
* installing *source* package ‘AlgDesign’ ...
** package ‘AlgDesign’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/Rtmp41UICN/R.INSTALL314ef072b51053/AlgDesign/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c FederovOpt.c -o FederovOpt.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c OptBlock.c -o OptBlock.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Utility.c -o Utility.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o AlgDesign.so FederovOpt.o OptBlock.o Utility.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp41UICN/R.INSTALL314ef072b51053/AlgDesign/src'
make[1]: Entering directory '/tmp/Rtmp41UICN/R.INSTALL314ef072b51053/AlgDesign/src'
make[1]: Leaving directory '/tmp/Rtmp41UICN/R.INSTALL314ef072b51053/AlgDesign/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-AlgDesign/00new/AlgDesign/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AlgDesign)
* installing *source* package ‘ellipse’ ...
** package ‘ellipse’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ellipse)
* installing *source* package ‘flashClust’ ...
** package ‘flashClust’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-4) 13.2.0’
make[1]: Entering directory '/tmp/RtmpZEmkjt/R.INSTALL31760679574d21/flashClust/src'
gfortran  -fpic  -g -O2 -Wall -mtune=native -c hc.f -o hc.o
gfortran  -fpic  -g -O2 -Wall -mtune=native -c hcass2.f -o hcass2.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o flashClust.so hc.o hcass2.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpZEmkjt/R.INSTALL31760679574d21/flashClust/src'
make[1]: Entering directory '/tmp/RtmpZEmkjt/R.INSTALL31760679574d21/flashClust/src'
make[1]: Leaving directory '/tmp/RtmpZEmkjt/R.INSTALL31760679574d21/flashClust/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-flashClust/00new/flashClust/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flashClust)
* installing *source* package ‘leaps’ ...
** package ‘leaps’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-4) 13.2.0’
make[1]: Entering directory '/tmp/RtmpqjyPzj/R.INSTALL317e5220b1e5fe/leaps/src'
gfortran  -fpic  -g -O2 -Wall -mtune=native -c leaps.f -o leaps.o
leaps.f:218:72:

  218 |    20 RBAR(I) = ZERO
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
leaps.f:412:72:

  412 |      *            IL, VORDER)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
leaps.f:533:72:

  533 |    10 WK(J) = SS(J)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
leaps.f:723:72:

  723 |         DO 100 K = 1, POS
      |                                                                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1)
leaps.f:889:72:

  889 |    20 IWK(I) = LAST
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
leaps.f:917:72:

  917 |      *             VORDER)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
leaps.f:922:72:

  922 |    60 IWK(I) = NEWPOS - 1
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
leaps.f:1043:72:

 1043 |      *        IL, VORDER)
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
leaps.f:1126:72:

 1126 |    10 WORK(COL) = SQRT(D(COL))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
leaps.f:1229:72:

 1229 |    10 WORK(ROW) = SQRT(D(ROW))
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
leaps.f:1316:72:

 1316 |    10 SUMY = SUMY + D(ROW) * THETAB(ROW)**2
      |                                                                        1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
gfortran  -fpic  -g -O2 -Wall -mtune=native -c leapshdr.f -o leapshdr.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o leaps.so leaps.o leapshdr.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpqjyPzj/R.INSTALL317e5220b1e5fe/leaps/src'
make[1]: Entering directory '/tmp/RtmpqjyPzj/R.INSTALL317e5220b1e5fe/leaps/src'
make[1]: Leaving directory '/tmp/RtmpqjyPzj/R.INSTALL317e5220b1e5fe/leaps/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-leaps/00new/leaps/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (leaps)
* installing *source* package ‘multcompView’ ...
** package ‘multcompView’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (multcompView)
* installing *source* package ‘scatterplot3d’ ...
** package ‘scatterplot3d’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scatterplot3d)
* installing *source* package ‘ggrepel’ ...
** package ‘ggrepel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpkGbdEt/R.INSTALL3190e238ab400f/ggrepel/src'
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c repel_boxes.cpp -o repel_boxes.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o ggrepel.so RcppExports.o repel_boxes.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpkGbdEt/R.INSTALL3190e238ab400f/ggrepel/src'
make[1]: Entering directory '/tmp/RtmpkGbdEt/R.INSTALL3190e238ab400f/ggrepel/src'
make[1]: Leaving directory '/tmp/RtmpkGbdEt/R.INSTALL3190e238ab400f/ggrepel/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-ggrepel/00new/ggrepel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggrepel)
* installing *source* package ‘estimability’ ...
** package ‘estimability’ successfully unpacked and MD5 sums checked
** using staged installation
** R
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** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (estimability)
* installing *source* package ‘numDeriv’ ...
** package ‘numDeriv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
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** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (numDeriv)
* installing *source* package ‘mvtnorm’ ...
** package ‘mvtnorm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-4) 13.2.0’
make[1]: Entering directory '/tmp/RtmpQbPQd8/R.INSTALL31cf3b596d0b/mvtnorm/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c C_FORTRAN_interface.c -o C_FORTRAN_interface.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c lpmvnorm.c -o lpmvnorm.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c ltMatrices.c -o ltMatrices.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c miwa.c -o miwa.o
gfortran  -fpic  -g -O2 -Wall -mtune=native -c mvt.f -o mvt.o
mvt.f:868:11:

  868 |       hs = sign( one, dh - r*dk )
      |           1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
mvt.f:869:11:

  869 |       ks = sign( one, dk - r*dh )
      |           1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
mvt.f:1164:16:

 1164 |             K = MOD( C(NP, MIN(NDIM-1,KLIM-1))*DBLE(K), DBLE(P(NP)) )
      |                1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
mvt.f:1224:17:

 1224 |             JP = 1 + J*R(J)
      |                 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c mvtnorm-init.c -o mvtnorm-init.o
gfortran  -fpic  -g -O2 -Wall -mtune=native -c tvpack.f -o tvpack.o
tvpack.f:395:14:

  395 |          HS = SIGN( ONE, DH - R*DK )
      |              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
tvpack.f:396:14:

  396 |          KS = SIGN( ONE, DK - R*DH )
      |              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
tvpack.f:220:72:

  220 |       END
      |                                                                        ^
Warning: ‘fin’ may be used uninitialized [-Wmaybe-uninitialized]
tvpack.f:196:58:

  196 |       DOUBLE PRECISION EI(NL), AI(NL), BI(NL), FI(NL), FIN, ERR, KRNRDT
      |                                                          ^
note: ‘fin’ was declared here
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o mvtnorm.so C_FORTRAN_interface.o lpmvnorm.o ltMatrices.o miwa.o mvt.o mvtnorm-init.o tvpack.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpQbPQd8/R.INSTALL31cf3b596d0b/mvtnorm/src'
make[1]: Entering directory '/tmp/RtmpQbPQd8/R.INSTALL31cf3b596d0b/mvtnorm/src'
make[1]: Leaving directory '/tmp/RtmpQbPQd8/R.INSTALL31cf3b596d0b/mvtnorm/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-mvtnorm/00new/mvtnorm/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mvtnorm)
* installing *source* package ‘htmlwidgets’ ...
** package ‘htmlwidgets’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
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** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (htmlwidgets)
* installing *source* package ‘bit64’ ...
** package ‘bit64’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpEImoTK/R.INSTALL31e3a3587bd942/bit64/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c bsearch.c -o bsearch.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cache.c -o cache.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c hash64.c -o hash64.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c integer64.c -o integer64.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c sort64.c -o sort64.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c sortuse64.c -o sortuse64.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o bit64.so bsearch.o cache.o hash64.o init.o integer64.o sort64.o sortuse64.o -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpEImoTK/R.INSTALL31e3a3587bd942/bit64/src'
make[1]: Entering directory '/tmp/RtmpEImoTK/R.INSTALL31e3a3587bd942/bit64/src'
make[1]: Leaving directory '/tmp/RtmpEImoTK/R.INSTALL31e3a3587bd942/bit64/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-bit64/00new/bit64/libs
** R
** data
** exec
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** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bit64)
* installing *source* package ‘progress’ ...
** package ‘progress’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
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** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (progress)
* installing *source* package ‘R.oo’ ...
** package ‘R.oo’ successfully unpacked and MD5 sums checked
** using staged installation
** R
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Warning in setGenericS3.default(name, export = exportGeneric, envir = envir,  :
  Renamed the preexisting function getMethods to getMethods.default, which was defined in environment R.oo.
Warning in setGenericS3.default(name, export = exportGeneric, envir = envir,  :
  Renamed the preexisting function getClasses to getClasses.default, which was defined in environment R.oo.
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (R.oo)
* installing *source* package ‘diffobj’ ...
** package ‘diffobj’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpSOZknG/R.INSTALL3244bc471e222/diffobj/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c diff.c -o diff.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c diffobj.c -o diffobj.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o diffobj.so diff.o diffobj.o init.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpSOZknG/R.INSTALL3244bc471e222/diffobj/src'
make[1]: Entering directory '/tmp/RtmpSOZknG/R.INSTALL3244bc471e222/diffobj/src'
make[1]: Leaving directory '/tmp/RtmpSOZknG/R.INSTALL3244bc471e222/diffobj/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-diffobj/00new/diffobj/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (diffobj)
ERROR: dependency ‘class’ is not available for package ‘e1071’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/e1071’
* installing *source* package ‘desc’ ...
** package ‘desc’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (desc)
* installing *source* package ‘processx’ ...
** package ‘processx’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpkVFOt4/R.INSTALL327aae57bb9b31/processx/src'
clang-16 -g -O3 -Wall -pedantic -Wl,-O1 -Wall tools/px.c -o tools/px
clang-16 -g -O3 -Wall -pedantic -Wl,-O1 -I../inst/include -Wall tools/sock.c -o tools/sock
clang-16 -g -O3 -Wall -pedantic -Wl,-O1 supervisor/supervisor.c \
      supervisor/utils.c -o supervisor/supervisor
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c base64.c -o base64.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c client.c -o client.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c errors.c -o errors.o
clang-16 -shared -L"/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib" -Wl,-O1 -o client.so base64.o client.o errors.o  \
	 -L"/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib" -lR
if [ -n "" ]; then \
    echo Removing libR.so dependency from client.so; \
    patchelf --remove-needed libR.so client.so; \
fi
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c poll.c -o poll.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c processx-connection.c -o processx-connection.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c processx-vector.c -o processx-vector.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c create-time.c -o create-time.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c unix/childlist.c -o unix/childlist.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c unix/connection.c -o unix/connection.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c unix/processx.c -o unix/processx.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c unix/sigchld.c -o unix/sigchld.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c unix/utils.c -o unix/utils.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c unix/named_pipe.c -o unix/named_pipe.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o
clang-16 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpkVFOt4/R.INSTALL327aae57bb9b31/processx/src'
make[1]: Entering directory '/tmp/RtmpkVFOt4/R.INSTALL327aae57bb9b31/processx/src'
make[1]: Leaving directory '/tmp/RtmpkVFOt4/R.INSTALL327aae57bb9b31/processx/src'
installing via 'install.libs.R' to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-processx/00new/processx
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (processx)
* installing *source* package ‘broom’ ...
** package ‘broom’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (broom)
ERROR: dependency ‘survival’ is not available for package ‘quantreg’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/quantreg’
* installing *source* package ‘promises’ ...
** package ‘promises’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpDQKFFr/R.INSTALL32ade82d3d133e/promises/src'
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c promise_task.cpp -o promise_task.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o promises.so RcppExports.o promise_task.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpDQKFFr/R.INSTALL32ade82d3d133e/promises/src'
make[1]: Entering directory '/tmp/RtmpDQKFFr/R.INSTALL32ade82d3d133e/promises/src'
make[1]: Leaving directory '/tmp/RtmpDQKFFr/R.INSTALL32ade82d3d133e/promises/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-promises/00new/promises/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (promises)
* installing *source* package ‘crosstalk’ ...
** package ‘crosstalk’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (crosstalk)
* installing *source* package ‘emmeans’ ...
** package ‘emmeans’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (emmeans)
* installing *source* package ‘vroom’ ...
** package ‘vroom’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/Rtmp2i2RBA/R.INSTALL3302b95273b1b1/vroom/src'
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Iconv.cpp -o Iconv.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c LocaleInfo.cpp -o LocaleInfo.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c altrep.cc -o altrep.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cpp11.cpp -o cpp11.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c delimited_index.cc -o delimited_index.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c delimited_index_connection.cc -o delimited_index_connection.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fixed_width_index_connection.cc -o fixed_width_index_connection.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c gen.cc -o gen.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c grisu3.c -o grisu3.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c guess_type.cc -o guess_type.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c iconv_file.cc -o iconv_file.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c index_collection.cc -o index_collection.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom.cc -o vroom.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_big_int.cc -o vroom_big_int.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_chr.cc -o vroom_chr.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_date.cc -o vroom_date.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_dbl.cc -o vroom_dbl.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_dttm.cc -o vroom_dttm.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_errors.cpp -o vroom_errors.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_fct.cc -o vroom_fct.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_fwf.cc -o vroom_fwf.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_int.cc -o vroom_int.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_num.cc -o vroom_num.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_rle.cc -o vroom_rle.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_time.cc -o vroom_time.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Imio/include -DWIN32_LEAN_AND_MEAN -Ispdlog/include -DFMT_HEADER_ONLY -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/progress/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c vroom_write.cc -o vroom_write.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o vroom.so Iconv.o LocaleInfo.o altrep.o cpp11.o delimited_index.o delimited_index_connection.o fixed_width_index_connection.o gen.o grisu3.o guess_type.o iconv_file.o index_collection.o vroom.o vroom_big_int.o vroom_chr.o vroom_date.o vroom_dbl.o vroom_dttm.o vroom_errors.o vroom_fct.o vroom_fwf.o vroom_int.o vroom_num.o vroom_rle.o vroom_time.o vroom_write.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp2i2RBA/R.INSTALL3302b95273b1b1/vroom/src'
make[1]: Entering directory '/tmp/Rtmp2i2RBA/R.INSTALL3302b95273b1b1/vroom/src'
make[1]: Leaving directory '/tmp/Rtmp2i2RBA/R.INSTALL3302b95273b1b1/vroom/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-vroom/00new/vroom/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vroom)
* installing *source* package ‘R.utils’ ...
** package ‘R.utils’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in setGenericS3.default(name, export = exportGeneric, envir = envir,  :
  Renamed the preexisting function warnings to warnings.default, which was defined in environment R.utils.
Error in setGenericS3.default(name, export = exportGeneric, envir = envir,  : 
  Could not create generic function. There is already a non-generic function named use() in ‘R.utils’ with the same name as an existing default function use.default() in ‘R.utils’.
Error: unable to load R code in package ‘R.utils’
Execution halted
ERROR: lazy loading failed for package ‘R.utils’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/R.utils’
* installing *source* package ‘callr’ ...
** package ‘callr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (callr)
* installing *source* package ‘waldo’ ...
** package ‘waldo’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (waldo)
ERROR: dependencies ‘e1071’, ‘class’, ‘KernSmooth’ are not available for package ‘classInt’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/classInt’
* installing *source* package ‘httpuv’ ...
** package ‘httpuv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmpIG1HgK/R.INSTALL3439633bced633/httpuv/src'
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c RcppExports-legacy.cpp -o RcppExports-legacy.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c callback.cpp -o callback.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c callbackqueue.cpp -o callbackqueue.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c filedatasource-unix.cpp -o filedatasource-unix.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c filedatasource-win.cpp -o filedatasource-win.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c fs.cpp -o fs.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c gzipdatasource.cpp -o gzipdatasource.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c http.cpp -o http.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c httprequest.cpp -o httprequest.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c httpresponse.cpp -o httpresponse.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c httpuv.cpp -o httpuv.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c md5.c -o md5.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c mime.cpp -o mime.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c socket.cpp -o socket.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c staticpath.cpp -o staticpath.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c thread.cpp -o thread.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c timegm.cpp -o timegm.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c utils.cpp -o utils.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c uvutil.cpp -o uvutil.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c webapplication.cpp -o webapplication.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c websockets-base.cpp -o websockets-base.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c websockets-hixie76.cpp -o websockets-hixie76.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c websockets-hybi03.cpp -o websockets-hybi03.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c websockets-ietf.cpp -o websockets-ietf.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c websockets.cpp -o websockets.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c winutils.cpp -o winutils.o
cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
cd libuv; \
if ! command -v automake >/dev/null 2>&1 ; then \
	echo "automake not found. Touching files so configure will not try to run automake."; \
	touch aclocal.m4; \
	touch -r aclocal.m4 configure Makefile.in; \
else \
	echo "automake found. Running autoupdate and autogen.sh."; \
	autoupdate; \
	sh autogen.sh; \
fi; \
chmod +x configure; \
CC="clang-16" CFLAGS="-g -O3 -Wall -pedantic -fpic -fvisibility=hidden -DNDEBUG" CPPFLAGS="-I/usr/local/include" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-O1" ./configure "--quiet"
automake found. Running autoupdate and autogen.sh.
+ libtoolize --copy
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltversion.m4'
+ aclocal -I m4
+ autoconf
configure.ac:46: warning: $as_echo is obsolete; use AS_ECHO(["message"]) instead
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
m4/ax_pthread.m4:88: AX_PTHREAD is expanded from...
configure.ac:46: the top level
+ automake --add-missing --copy
make --directory=libuv \
	HAVE_DTRACE=0
make[2]: Entering directory '/tmp/RtmpIG1HgK/R.INSTALL3439633bced633/httpuv/src/libuv'
  CC       src/libuv_la-fs-poll.lo
  CC       src/libuv_la-idna.lo
  CC       src/libuv_la-inet.lo
  CC       src/libuv_la-random.lo
  CC       src/libuv_la-strscpy.lo
  CC       src/libuv_la-threadpool.lo
  CC       src/libuv_la-timer.lo
  CC       src/libuv_la-uv-data-getter-setters.lo
  CC       src/libuv_la-uv-common.lo
  CC       src/libuv_la-version.lo
  CC       src/unix/libuv_la-async.lo
  CC       src/unix/libuv_la-core.lo
  CC       src/unix/libuv_la-dl.lo
  CC       src/unix/libuv_la-fs.lo
  CC       src/unix/libuv_la-getaddrinfo.lo
  CC       src/unix/libuv_la-getnameinfo.lo
  CC       src/unix/libuv_la-loop-watcher.lo
  CC       src/unix/libuv_la-loop.lo
  CC       src/unix/libuv_la-pipe.lo
  CC       src/unix/libuv_la-poll.lo
  CC       src/unix/libuv_la-process.lo
  CC       src/unix/libuv_la-random-devurandom.lo
  CC       src/unix/libuv_la-signal.lo
  CC       src/unix/libuv_la-stream.lo
  CC       src/unix/libuv_la-tcp.lo
  CC       src/unix/libuv_la-thread.lo
src/unix/thread.c:195:24: warning: comparison of integers of different signs: 'rlim_t' (aka 'unsigned long') and 'long' [-Wsign-compare]
      if (lim.rlim_cur >= PTHREAD_STACK_MIN)
          ~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~
src/unix/thread.c:243:20: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'long' [-Wsign-compare]
    if (stack_size < PTHREAD_STACK_MIN)
        ~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
2 warnings generated.
  CC       src/unix/libuv_la-tty.lo
  CC       src/unix/libuv_la-udp.lo
  CC       src/unix/libuv_la-linux-core.lo
  CC       src/unix/libuv_la-linux-inotify.lo
  CC       src/unix/libuv_la-linux-syscalls.lo
  CC       src/unix/libuv_la-procfs-exepath.lo
  CC       src/unix/libuv_la-proctitle.lo
  CC       src/unix/libuv_la-random-getrandom.lo
  CC       src/unix/libuv_la-random-sysctl-linux.lo
  CC       src/unix/libuv_la-epoll.lo
  CCLD     libuv.la
make[2]: Leaving directory '/tmp/RtmpIG1HgK/R.INSTALL3439633bced633/httpuv/src/libuv'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c http-parser/http_parser.c -o http-parser/http_parser.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c sha1/sha1.c -o sha1/sha1.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/Rcpp/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/later/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fvisibility=hidden -DSTRICT_R_HEADERS -fpic  -g -O3 -Wall -pedantic -c base64/base64.cpp -o base64/base64.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o httpuv.so RcppExports-legacy.o RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o ./libuv/.libs/libuv.a ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpIG1HgK/R.INSTALL3439633bced633/httpuv/src'
make[1]: Entering directory '/tmp/RtmpIG1HgK/R.INSTALL3439633bced633/httpuv/src'
make[1]: Leaving directory '/tmp/RtmpIG1HgK/R.INSTALL3439633bced633/httpuv/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-httpuv/00new/httpuv/libs
** R
** demo
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (httpuv)
* installing *source* package ‘readr’ ...
** package ‘readr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/RtmphS1BTv/R.INSTALL3825736816b27e/readr/src'
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Collector.cpp -o Collector.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c CollectorGuess.cpp -o CollectorGuess.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Iconv.cpp -o Iconv.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c LocaleInfo.cpp -o LocaleInfo.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Reader.cpp -o Reader.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Source.cpp -o Source.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c Tokenizer.cpp -o Tokenizer.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c TokenizerDelim.cpp -o TokenizerDelim.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c TokenizerFwf.cpp -o TokenizerFwf.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c TokenizerWs.cpp -o TokenizerWs.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c connection.cpp -o connection.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cpp11.cpp -o cpp11.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c datetime.cpp -o datetime.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c grisu3.c -o grisu3.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c parse.cpp -o parse.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c read.cpp -o read.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c type_convert.cpp -o type_convert.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c write.cpp -o write.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/tzdb/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c write_delim.cpp -o write_delim.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o readr.so Collector.o CollectorGuess.o Iconv.o LocaleInfo.o Reader.o Source.o Tokenizer.o TokenizerDelim.o TokenizerFwf.o TokenizerWs.o connection.o cpp11.o datetime.o grisu3.o init.o parse.o read.o type_convert.o write.o write_delim.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmphS1BTv/R.INSTALL3825736816b27e/readr/src'
make[1]: Entering directory '/tmp/RtmphS1BTv/R.INSTALL3825736816b27e/readr/src'
make[1]: Leaving directory '/tmp/RtmphS1BTv/R.INSTALL3825736816b27e/readr/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-readr/00new/readr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (readr)
* installing *source* package ‘pkgbuild’ ...
** package ‘pkgbuild’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgbuild)
ERROR: dependency ‘R.utils’ is not available for package ‘R.cache’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/R.cache’
* installing *source* package ‘shiny’ ...
** package ‘shiny’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shiny)
* installing *source* package ‘DT’ ...
** package ‘DT’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DT)
* installing *source* package ‘haven’ ...
** package ‘haven’ successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=
Using PKG_LIBS=-lz 
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/Rtmp136UIp/R.INSTALL39f7294f902879/haven/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c tagged_na.c -o tagged_na.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/CKHashTable.c -o readstat/CKHashTable.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_bits.c -o readstat/readstat_bits.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_convert.c -o readstat/readstat_convert.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_error.c -o readstat/readstat_error.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_io_unistd.c -o readstat/readstat_io_unistd.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_malloc.c -o readstat/readstat_malloc.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_metadata.c -o readstat/readstat_metadata.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_parser.c -o readstat/readstat_parser.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_value.c -o readstat/readstat_value.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_variable.c -o readstat/readstat_variable.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/readstat_writer.c -o readstat/readstat_writer.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/ieee.c -o readstat/sas/ieee.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_sas.c -o readstat/sas/readstat_sas.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_sas7bcat_read.c -o readstat/sas/readstat_sas7bcat_read.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_sas7bcat_write.c -o readstat/sas/readstat_sas7bcat_write.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_sas7bdat_read.c -o readstat/sas/readstat_sas7bdat_read.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_sas7bdat_write.c -o readstat/sas/readstat_sas7bdat_write.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_sas_rle.c -o readstat/sas/readstat_sas_rle.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_xport.c -o readstat/sas/readstat_xport.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_xport_parse_format.c -o readstat/sas/readstat_xport_parse_format.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_xport_read.c -o readstat/sas/readstat_xport_read.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/sas/readstat_xport_write.c -o readstat/sas/readstat_xport_write.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_por.c -o readstat/spss/readstat_por.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_por_parse.c -o readstat/spss/readstat_por_parse.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_por_read.c -o readstat/spss/readstat_por_read.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_por_write.c -o readstat/spss/readstat_por_write.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_sav.c -o readstat/spss/readstat_sav.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_sav_compress.c -o readstat/spss/readstat_sav_compress.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_sav_parse.c -o readstat/spss/readstat_sav_parse.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_sav_parse_timestamp.c -o readstat/spss/readstat_sav_parse_timestamp.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_sav_read.c -o readstat/spss/readstat_sav_read.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_sav_write.c -o readstat/spss/readstat_sav_write.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_spss.c -o readstat/spss/readstat_spss.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_spss_parse.c -o readstat/spss/readstat_spss_parse.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_zsav_compress.c -o readstat/spss/readstat_zsav_compress.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_zsav_read.c -o readstat/spss/readstat_zsav_read.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/spss/readstat_zsav_write.c -o readstat/spss/readstat_zsav_write.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/stata/readstat_dta.c -o readstat/stata/readstat_dta.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/stata/readstat_dta_parse_timestamp.c -o readstat/stata/readstat_dta_parse_timestamp.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/stata/readstat_dta_read.c -o readstat/stata/readstat_dta_read.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c readstat/stata/readstat_dta_write.c -o readstat/stata/readstat_dta_write.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c DfReader.cpp -o DfReader.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c DfWriter.cpp -o DfWriter.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c cpp11.cpp -o cpp11.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Ireadstat -DHAVE_ZLIB -fpic  -g -O3 -Wall -pedantic -c haven_types.cpp -o haven_types.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o haven.so tagged_na.o readstat/CKHashTable.o readstat/readstat_bits.o readstat/readstat_convert.o readstat/readstat_error.o readstat/readstat_io_unistd.o readstat/readstat_malloc.o readstat/readstat_metadata.o readstat/readstat_parser.o readstat/readstat_value.o readstat/readstat_variable.o readstat/readstat_writer.o readstat/sas/ieee.o readstat/sas/readstat_sas.o readstat/sas/readstat_sas7bcat_read.o readstat/sas/readstat_sas7bcat_write.o readstat/sas/readstat_sas7bdat_read.o readstat/sas/readstat_sas7bdat_write.o readstat/sas/readstat_sas_rle.o readstat/sas/readstat_xport.o readstat/sas/readstat_xport_parse_format.o readstat/sas/readstat_xport_read.o readstat/sas/readstat_xport_write.o readstat/spss/readstat_por.o readstat/spss/readstat_por_parse.o readstat/spss/readstat_por_read.o readstat/spss/readstat_por_write.o readstat/spss/readstat_sav.o readstat/spss/readstat_sav_compress.o readstat/spss/readstat_sav_parse.o readstat/spss/readstat_sav_parse_timestamp.o readstat/spss/readstat_sav_read.o readstat/spss/readstat_sav_write.o readstat/spss/readstat_spss.o readstat/spss/readstat_spss_parse.o readstat/spss/readstat_zsav_compress.o readstat/spss/readstat_zsav_read.o readstat/spss/readstat_zsav_write.o readstat/stata/readstat_dta.o readstat/stata/readstat_dta_parse_timestamp.o readstat/stata/readstat_dta_read.o readstat/stata/readstat_dta_write.o DfReader.o DfWriter.o cpp11.o haven_types.o -lz -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp136UIp/R.INSTALL39f7294f902879/haven/src'
make[1]: Entering directory '/tmp/Rtmp136UIp/R.INSTALL39f7294f902879/haven/src'
make[1]: Leaving directory '/tmp/Rtmp136UIp/R.INSTALL39f7294f902879/haven/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-haven/00new/haven/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (haven)
* installing *source* package ‘pkgload’ ...
** package ‘pkgload’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgload)
* installing *source* package ‘miniUI’ ...
** package ‘miniUI’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miniUI)
ERROR: dependency ‘R.cache’ is not available for package ‘styler’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/styler’
* installing *source* package ‘labelled’ ...
** package ‘labelled’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (labelled)
* installing *source* package ‘testthat’ ...
** package ‘testthat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
make[1]: Entering directory '/tmp/Rtmpv6Mmbe/R.INSTALL3a990e1b912f67/testthat/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c reassign.c -o reassign.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c test-catch.cpp -o test-catch.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c test-example.cpp -o test-example.o
clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c test-runner.cpp -o test-runner.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpv6Mmbe/R.INSTALL3a990e1b912f67/testthat/src'
make[1]: Entering directory '/tmp/Rtmpv6Mmbe/R.INSTALL3a990e1b912f67/testthat/src'
make[1]: Leaving directory '/tmp/Rtmpv6Mmbe/R.INSTALL3a990e1b912f67/testthat/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-testthat/00new/testthat/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (testthat)
ERROR: dependencies ‘styler’, ‘classInt’ are not available for package ‘questionr’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/questionr’
* installing *source* package ‘nloptr’ ...
** package ‘nloptr’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++-16 -std=gnu++17 accepts -g... yes
checking for clang++-16 -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... clang++-16 -std=gnu++17 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether clang++-16 -std=gnu++17 accepts -g... (cached) yes
checking for clang++-16 -std=gnu++17 option to enable C++11 features... (cached) none needed
checking for pkg-config... /usr/bin/pkg-config
checking if pkg-config knows NLopt... yes
checking for pkg-config checking NLopt version... >= 2.7.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
using C++11
make[1]: Entering directory '/tmp/RtmpDrEX5c/R.INSTALL3af8926070c0db/nloptr/src'
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init_nloptr.c -o init_nloptr.o
clang-16 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c nloptr.c -o nloptr.o
clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-C-API.cpp -o test-C-API.o
clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include  -I'/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/testthat/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-runner.cpp -o test-runner.o
clang++-16 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o nloptr.so init_nloptr.o nloptr.o test-C-API.o test-runner.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lnlopt -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpDrEX5c/R.INSTALL3af8926070c0db/nloptr/src'
make[1]: Entering directory '/tmp/RtmpDrEX5c/R.INSTALL3af8926070c0db/nloptr/src'
make[1]: Leaving directory '/tmp/RtmpDrEX5c/R.INSTALL3af8926070c0db/nloptr/src'
installing to /tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/00LOCK-nloptr/00new/nloptr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nloptr)
ERROR: dependency ‘questionr’ is not available for package ‘klaR’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/klaR’
ERROR: dependency ‘boot’ is not available for package ‘lme4’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/lme4’
ERROR: dependency ‘lme4’ is not available for package ‘pbkrtest’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/pbkrtest’
ERROR: dependencies ‘klaR’, ‘cluster’ are not available for package ‘agricolae’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/agricolae’
ERROR: dependencies ‘nnet’, ‘pbkrtest’, ‘quantreg’, ‘lme4’ are not available for package ‘car’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/car’
ERROR: dependencies ‘car’, ‘cluster’ are not available for package ‘FactoMineR’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/FactoMineR’
ERROR: dependencies ‘lme4’, ‘agricolae’, ‘FactoMineR’ are not available for package ‘inti’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/inti’

Quitting from lines 14-16 [setup] (germinar.Rmd)
Error: processing vignette 'germinar.Rmd' failed with diagnostics:
there is no package called 'inti'
--- failed re-building ‘germinar.Rmd’

--- re-building ‘huito.Rmd’ using rmarkdown
* installing *source* package ‘R.utils’ ...
** package ‘R.utils’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in setGenericS3.default(name, export = exportGeneric, envir = envir,  :
  Renamed the preexisting function warnings to warnings.default, which was defined in environment R.utils.
Error in setGenericS3.default(name, export = exportGeneric, envir = envir,  : 
  Could not create generic function. There is already a non-generic function named use() in ‘R.utils’ with the same name as an existing default function use.default() in ‘R.utils’.
Error: unable to load R code in package ‘R.utils’
Execution halted
ERROR: lazy loading failed for package ‘R.utils’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/R.utils’
ERROR: dependency ‘class’ is not available for package ‘e1071’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/e1071’
ERROR: dependency ‘survival’ is not available for package ‘quantreg’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/quantreg’
ERROR: dependency ‘boot’ is not available for package ‘lme4’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/lme4’
ERROR: dependency ‘R.utils’ is not available for package ‘R.cache’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/R.cache’
ERROR: dependencies ‘e1071’, ‘class’, ‘KernSmooth’ are not available for package ‘classInt’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/classInt’
ERROR: dependency ‘lme4’ is not available for package ‘pbkrtest’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/pbkrtest’
ERROR: dependency ‘R.cache’ is not available for package ‘styler’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/styler’
ERROR: dependencies ‘nnet’, ‘pbkrtest’, ‘quantreg’, ‘lme4’ are not available for package ‘car’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/car’
ERROR: dependencies ‘styler’, ‘classInt’ are not available for package ‘questionr’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/questionr’
ERROR: dependencies ‘car’, ‘cluster’ are not available for package ‘FactoMineR’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/FactoMineR’
ERROR: dependency ‘questionr’ is not available for package ‘klaR’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/klaR’
ERROR: dependencies ‘klaR’, ‘cluster’ are not available for package ‘agricolae’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/agricolae’
ERROR: dependencies ‘lme4’, ‘agricolae’, ‘FactoMineR’ are not available for package ‘inti’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/inti’

Quitting from lines 21-23 [setup] (huito.Rmd)
Error: processing vignette 'huito.Rmd' failed with diagnostics:
there is no package called 'inti'
--- failed re-building ‘huito.Rmd’

--- re-building ‘labels.Rmd’ using rmarkdown
* installing *source* package ‘R.utils’ ...
** package ‘R.utils’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in setGenericS3.default(name, export = exportGeneric, envir = envir,  :
  Renamed the preexisting function warnings to warnings.default, which was defined in environment R.utils.
Error in setGenericS3.default(name, export = exportGeneric, envir = envir,  : 
  Could not create generic function. There is already a non-generic function named use() in ‘R.utils’ with the same name as an existing default function use.default() in ‘R.utils’.
Error: unable to load R code in package ‘R.utils’
Execution halted
ERROR: lazy loading failed for package ‘R.utils’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/R.utils’
ERROR: dependency ‘class’ is not available for package ‘e1071’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/e1071’
ERROR: dependency ‘survival’ is not available for package ‘quantreg’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/quantreg’
ERROR: dependency ‘boot’ is not available for package ‘lme4’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/lme4’
ERROR: dependency ‘R.utils’ is not available for package ‘R.cache’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/R.cache’
ERROR: dependencies ‘e1071’, ‘class’, ‘KernSmooth’ are not available for package ‘classInt’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/classInt’
ERROR: dependency ‘lme4’ is not available for package ‘pbkrtest’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/pbkrtest’
ERROR: dependency ‘R.cache’ is not available for package ‘styler’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/styler’
ERROR: dependencies ‘nnet’, ‘pbkrtest’, ‘quantreg’, ‘lme4’ are not available for package ‘car’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/car’
ERROR: dependencies ‘styler’, ‘classInt’ are not available for package ‘questionr’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/questionr’
ERROR: dependencies ‘car’, ‘cluster’ are not available for package ‘FactoMineR’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/FactoMineR’
ERROR: dependency ‘questionr’ is not available for package ‘klaR’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/klaR’
ERROR: dependencies ‘klaR’, ‘cluster’ are not available for package ‘agricolae’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/agricolae’
ERROR: dependencies ‘lme4’, ‘agricolae’, ‘FactoMineR’ are not available for package ‘inti’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/inti’

Quitting from lines 14-15 [setup] (labels.Rmd)
Error: processing vignette 'labels.Rmd' failed with diagnostics:
there is no package called 'inti'
--- failed re-building ‘labels.Rmd’

--- re-building ‘stickers.Rmd’ using rmarkdown
* installing *source* package ‘R.utils’ ...
** package ‘R.utils’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in setGenericS3.default(name, export = exportGeneric, envir = envir,  :
  Renamed the preexisting function warnings to warnings.default, which was defined in environment R.utils.
Error in setGenericS3.default(name, export = exportGeneric, envir = envir,  : 
  Could not create generic function. There is already a non-generic function named use() in ‘R.utils’ with the same name as an existing default function use.default() in ‘R.utils’.
Error: unable to load R code in package ‘R.utils’
Execution halted
ERROR: lazy loading failed for package ‘R.utils’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/R.utils’
ERROR: dependency ‘class’ is not available for package ‘e1071’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/e1071’
ERROR: dependency ‘survival’ is not available for package ‘quantreg’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/quantreg’
ERROR: dependency ‘boot’ is not available for package ‘lme4’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/lme4’
ERROR: dependency ‘R.utils’ is not available for package ‘R.cache’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/R.cache’
ERROR: dependencies ‘e1071’, ‘class’, ‘KernSmooth’ are not available for package ‘classInt’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/classInt’
ERROR: dependency ‘lme4’ is not available for package ‘pbkrtest’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/pbkrtest’
ERROR: dependency ‘R.cache’ is not available for package ‘styler’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/styler’
ERROR: dependencies ‘nnet’, ‘pbkrtest’, ‘quantreg’, ‘lme4’ are not available for package ‘car’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/car’
ERROR: dependencies ‘styler’, ‘classInt’ are not available for package ‘questionr’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/questionr’
ERROR: dependencies ‘car’, ‘cluster’ are not available for package ‘FactoMineR’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/FactoMineR’
ERROR: dependency ‘questionr’ is not available for package ‘klaR’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/klaR’
ERROR: dependencies ‘klaR’, ‘cluster’ are not available for package ‘agricolae’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/agricolae’
ERROR: dependencies ‘lme4’, ‘agricolae’, ‘FactoMineR’ are not available for package ‘inti’
* removing ‘/tmp/Rtmp1yBfbS/RLIBS_2edc0769ad5da8/inti’

Quitting from lines 14-15 [setup] (stickers.Rmd)
Error: processing vignette 'stickers.Rmd' failed with diagnostics:
there is no package called 'inti'
--- failed re-building ‘stickers.Rmd’

SUMMARY: processing the following files failed:
  ‘germinar.Rmd’ ‘huito.Rmd’ ‘labels.Rmd’ ‘stickers.Rmd’

Error: Vignette re-building failed.
Execution halted