Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > 
  > test_check("scoper")
  Loading required package: scoper
  Loading required package: ggplot2
  As of v1.0.0 the AIRR Rearrangement schema is now the default file format.
  A description of the standard is available at https://docs.airr-community.org.
  The legacy Change-O format is supported through arguments to each function
  that allow the input column names to be explicitly defined.
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_clone.R:29:5'): Test identicalClones ───────────────────────────
  Error in `groupGenes(db, v_call = v_call, j_call = j_call, junc_len = NULL, 
      cell_id = cell_id, locus = locus, only_heavy = only_heavy, 
      first = first)`: The column locus was not found
  Backtrace:
      ▆
   1. └─scoper::identicalClones(...) at test_clone.R:29:4
   2.   └─scoper:::defineClonesScoper(...)
   3.     └─scoper:::prepare_db(...)
   4.       └─alakazam::groupGenes(...)
  ── Error ('test_clone.R:53:5'): Test hierarchicalClones ────────────────────────
  Error in `groupGenes(db, v_call = v_call, j_call = j_call, junc_len = NULL, 
      cell_id = cell_id, locus = locus, only_heavy = only_heavy, 
      first = first)`: The column locus was not found
  Backtrace:
      ▆
   1. └─scoper::hierarchicalClones(...) at test_clone.R:53:4
   2.   └─scoper:::defineClonesScoper(...)
   3.     └─scoper:::prepare_db(...)
   4.       └─alakazam::groupGenes(...)
  ── Error ('test_clone.R:82:5'): Test spectralClones - novj ─────────────────────
  Error in `groupGenes(db, v_call = v_call, j_call = j_call, junc_len = NULL, 
      cell_id = cell_id, locus = locus, only_heavy = only_heavy, 
      first = first)`: The column locus was not found
  Backtrace:
      ▆
   1. └─scoper::spectralClones(...) at test_clone.R:82:4
   2.   └─scoper:::defineClonesScoper(...)
   3.     └─scoper:::prepare_db(...)
   4.       └─alakazam::groupGenes(...)
  ── Error ('test_clone.R:110:5'): Test spectralClones - vj ──────────────────────
  Error in `groupGenes(db, v_call = v_call, j_call = j_call, junc_len = NULL, 
      cell_id = cell_id, locus = locus, only_heavy = only_heavy, 
      first = first)`: The column locus was not found
  Backtrace:
      ▆
   1. └─scoper::spectralClones(...) at test_clone.R:110:4
   2.   └─scoper:::defineClonesScoper(...)
   3.     └─scoper:::prepare_db(...)
   4.       └─alakazam::groupGenes(...)
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted