Running ‘testthat.R’ [20m/26m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(MRFcov)
  Loading required package: glmnet
  Loading required package: Matrix
  Loaded glmnet 4.1-8
  Welcome to MRFcov. If you use the package, please cite as: Clark, NJ, Wells, K and Lindberg, O. 2018. Unravelling changing interspecific interactions across environmental gradients using Markov random fields. Ecology doi: 10.1002/ecy.2221 
  > 
  > test_check("MRFcov")
  Leave-one-out cv used for the following low-occurrence (rare) nodes:
   Microfilaria ...
  Fitting MRF models in sequence using 1 core ...
  Leave-one-out cv used for the following low-occurrence (rare) nodes:
   Microfilaria ...
  Fitting MRF models in sequence using 1 core ...
  Fitting bootstrap_MRF models in sequence using 1 core... 
  Generating node-optimised Conditional Random Fields model
  Leave-one-out cv used for the following low-occurrence (rare) nodes:
   Microfilaria ...
  Fitting MRF models in sequence using 1 core ...
  
  Generating Markov Random Fields model (no covariates)
  Leave-one-out cv used for the following low-occurrence (rare) nodes:
   Microfilaria ...
  Fitting MRF models in sequence using 1 core ...
  Generating node-optimised Conditional Random Fields model
  Fitting MRF models in sequence using 1 core ...
  
  Generating Markov Random Fields model (no covariates)
  Fitting MRF models in sequence using 1 core ...
  Generating node-optimised Conditional Random Fields model
  Poisson variables will be transformed using a nonparanormal...
  Fitting MRF models in sequence using 1 core ...
  
  Generating Markov Random Fields model (no covariates)
  Poisson variables will be transformed using a nonparanormal...
  Fitting MRF models in sequence using 1 core ...
  [ FAIL 0 | WARN 9 | SKIP 0 | PASS 31 ]
  
  [ FAIL 0 | WARN 9 | SKIP 0 | PASS 31 ]
  > 
  > proc.time()
     user  system elapsed 
   25.335   0.848  33.058 
  Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
  OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
  OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
  Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
  OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
  OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
  Killed