Running ‘testthat.R’ [20m/25m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(MOCHA)
  > 
  > test_check("MOCHA")
  
  'select()' returned 1:1 mapping between keys and columns
  
  
  Attaching package: 'Biostrings'
  
  The following object is masked from 'package:base':
  
      strsplit
  
  harmonizing input:
    removing 1 sampleMap rows not in names(experiments)
  harmonizing input:
    removing 3 sampleMap rows not in names(experiments)
  [ FAIL 0 | WARN 11 | SKIP 28 | PASS 27 ]
  
  ══ Skipped tests (28) ══════════════════════════════════════════════════════════
  • On CRAN (28): 'test_COVID_data_pipeline.R:1:1', 'test_MotifEnrichment.R:1:1',
    'test_MotifSetEnrichmentAnalysis.R:1:1', 'test_addMotifSet.R:1:1',
    'test_annotateTiles.R:21:5', 'test_annotateTiles.R:44:5',
    'test_annotateTiles.R:70:5', 'test_callOpenTiles.R:3:1',
    'test_combineSampleTileMatrix.R:14:5', 'test_combineSampleTileMatrix.R:32:5',
    'test_dimensionalityReduction.R:35:5', 'test_extractRegion.R:1:1',
    'test_getCoAccessibleLinks.R:22:3', 'test_getCoAccessibleLinks.R:53:3',
    'test_getCoverage.R:1:1', 'test_getDifferentialAccessibleTiles.R:1:1',
    'test_getPopFrags.R:13:1', 'test_getSampleTileMatrix.R:18:3',
    'test_subsetMOCHAObject.R:13:3', 'test_subsetMOCHAObject.R:25:3',
    'test_subsetMOCHAObject.R:67:3', 'test_subsetMOCHAObject.R:97:3',
    'test_subsetMOCHAObject.R:127:3', 'test_testCoAccessibilityChromVar.R:36:3',
    'test_testCoAccessibilityChromVar.R:78:3',
    'test_testCoAccessibilityChromVar.R:120:3',
    'test_testCoAccessibilityRandom.R:35:3',
    'test_testCoAccessibilityRandom.R:76:3'
  
  [ FAIL 0 | WARN 11 | SKIP 28 | PASS 27 ]
  > 
  > proc.time()
     user  system elapsed 
  212.887  18.652 331.817 
  Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
  OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
  OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
  Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
  OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
  OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
  Killed