Running ‘AAAtest-all.R’ [65s/70s]
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  Running ‘lmer-0.R’ [4s/5s]
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  Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ... OK
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  Running ‘nlmer-conv.R’ [3s/3s]
  Running ‘nlmer.R’ [3s/4s]
  Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ... OK
  Running ‘offset.R’ [5s/6s]
  Running ‘optimizer.R’ [7s/9s]
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  Running ‘prLogistic.R’ [3s/4s]
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Running the tests in ‘tests/bootMer.R’ failed.
Complete output:
  > if (.Platform$OS.type != "windows") {
  + 
  +     library(lme4)
  + 
  +     mySumm <- function(.) {
  +         s <- sigma(.)
  +         c(beta =getME(., "beta"),
  +           sigma = s,
  +           sig01 = unname(s * getME(., "theta")))
  +     }
  + 
  +     fm1 <- lmer(Yield ~ 1|Batch, Dyestuff)
  +     boo01 <- bootMer(fm1, mySumm, nsim = 10)
  +     boo02 <- bootMer(fm1, mySumm, nsim = 10, use.u = TRUE)
  + 
  +     ## boo02 <- bootMer(fm1, mySumm, nsim = 500, use.u = TRUE)
  +     if (require(boot)) {
  +         boot.ci(boo02,index=2,type="perc")
  +     }
  + 
  +     fm2 <- lmer(angle ~ recipe * temperature + (1|recipe:replicate), cake)
  +     boo03 <- bootMer(fm2, mySumm, nsim = 10)
  +     boo04 <- bootMer(fm2, mySumm, nsim = 10, use.u = TRUE)
  + 
  +     if (lme4:::testLevel() > 1) {
  +         gm1 <- glmer(cbind(incidence, size - incidence) ~ period + (1 | herd),
  +                      data = cbpp, family = binomial)
  +         boo05 <- bootMer(gm1, mySumm, nsim = 10)
  +         boo06 <- bootMer(gm1, mySumm, nsim = 10, use.u = TRUE)
  + 
  +         cbpp$obs <- factor(seq(nrow(cbpp)))
  +         gm2 <- glmer(cbind(incidence, size - incidence) ~ period +
  +                          (1 | herd) +  (1|obs),
  +                      family = binomial, data = cbpp)
  +         boo03 <- bootMer(gm2, mySumm, nsim = 10)
  +         boo04 <- bootMer(gm2, mySumm, nsim = 10, use.u = TRUE)
  +     }
  +     load(system.file("testdata","culcita_dat.RData",package="lme4"))
  +     cmod <- glmer(predation~ttt+(1|block),family=binomial,data=culcita_dat)
  +     set.seed(101)
  +     ## FIXME: sensitive to step-halving PIRLS tests
  +     ## expect_warning(cc <- confint(cmod,method="boot",nsim=10,quiet=TRUE,
  +     ##              .progress="txt",PBargs=list(style=3)),"some bootstrap runs failed")
  + 
  + 
  +     library(parallel)
  +     if (detectCores()>1) {
  +         ## http://stackoverflow.com/questions/12983137/how-do-detect-if-travis-ci-or-not
  +         travis <- nchar(Sys.getenv("TRAVIS"))>0
  +         if(.Platform$OS.type != "windows" && !travis) {
  +             boo01P <- bootMer(fm1, mySumm, nsim = 10, parallel="multicore", ncpus=2)
  +         }
  + 
  +         ## works in Solaris from an interactive console but not ???
  +         ##   via R CMD BATCH
  +         if (Sys.info()["sysname"] != "SunOS")
  +             boo01P.snow <- bootMer(fm1, mySumm, nsim = 10, parallel="snow", ncpus=2)
  +     }
  + 
  +     set.seed(101)
  +     dd <- data.frame(x=runif(200),
  +                      f=rep(1:20,each=10),
  +                      o=rnorm(200,mean=2))
  +     dd$y <- suppressMessages(simulate(~x+(1|f)+offset(o),
  +                                       family="poisson",
  +                                       newdata=dd,
  +                                       newparams=list(theta=1,beta=c(0,2)))[[1]])
  + 
  +     ## fails under flexLambda
  +     dd$y2 <- suppressMessages(simulate(~x+(1|f)+offset(o),
  +                                        family="gaussian",
  +                                        newdata=dd,
  +                                        newparams=list(theta=1,beta=c(0,2),sigma=1))[[1]])
  + 
  +     fm3 <- glmer(y~x+(1|f)+offset(o),
  +                  data=dd,family="poisson")
  + 
  +     fm4 <- lmer(y2~x+(1|f)+offset(o),
  +                 data=dd)
  + 
  +     mySumm2 <- function(fit) return(c(fixef(fit),getME(fit,'theta')))
  +     ## still some issues to fix here
  +     bb <- bootMer(fm3,mySumm2,nsim=10)
  +     attr(bb,"boot.fail.msgs")
  +     bb2 <- bootMer(fm4,mySumm2,nsim=10)
  + 
  + } ## skip on windows (for speed)
  Loading required package: Matrix
  Loading required package: boot
  Warning message:
  In norm.inter(t, alpha) : extreme order statistics used as endpoints
  > 
  > proc.time()
     user  system elapsed 
    8.617   0.685  21.044 
  Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
  OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
  OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
  Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
  OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
  OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
  Killed