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--- re-building ‘microbial.Rmd’ using knitr
Warning in file.info(x, extra_cols = FALSE) :
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<p><em>microbial</em> is a R package for microbial community analysis with dada2 (<a href="https://benjjneb.github.io/dada2/">https://benjjneb.github.io/dada2/</a>) and phyloseq (<a href="https://joey711.github.io/phyloseq/">https://joey711.github.io/phyloseq/</a>).
<em>microbial</em> package is developed to enhance the available statistical analysis procedures in R by providing simple functions to analysis and visualize the 16S rRNA data.Here we present a tutorial with minimum working examples to demonstrate usage and dependencies.</p>
<h2 id="1-data-format-requirement">1. Data format/ requirement</h2>
<p>To use the package user can start with the raw fastq files with sample information ready or user can start with a phyloseq object (phloseq-class) comprising taxa abundance information, taxonomy assignment, sample data which is a combination of the measured environmental variables and any categorical variables present in the sample.</p> [... truncated]
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Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
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