Error(s) in re-building vignettes:
  ...
--- re-building ‘microPopTutorial.Rmd’ using rmarkdown
Data sets in package 'microPop':

Acetogens               Acetogens dataframe
Bacteroides             Bacteroides dataframe
ButyrateProducers1      ButyrateProducers1 dataframe
ButyrateProducers2      ButyrateProducers2 dataframe
ButyrateProducers3      ButyrateProducers3 dataframe
LactateProducers        LactateProducers dataframe
MFG                     Microbial Functional Group (MFG) dataframes
Methanogens             Methanogens dataframe
NoButyFibreDeg          NoButyFibreDeg dataframe
NoButyStarchDeg         NoButyStarchDeg dataframe
PropionateProducers     PropionateProducers dataframe
Xaa                     Xaa dataframe
Xh2                     Xh2 dataframe
Xsu                     Xsu dataframe
microbeSysInfo          microbeSysInfo
microbeSysInfoHuman     microbeSysInfoHuman dataframe
microbeSysInfoRumen     microbeSysInfoRumen dataframe
resourceSysInfo         resourceSysInfo
resourceSysInfoHuman    resourceSysInfoHuman dataframe
resourceSysInfoRumen    resourceSysInfoRumen dataframe
strainParams            strainParams dataframe
systemInfoMicrobesPhyto
                        systemInfoMicrobesPhyto dataframe
systemInfoMicrobesVirus
                        systemInfoMicrobesVirus dataframe
systemInfoResourcesPhyto
                        systemInfoResourcesPhyto dataframe
systemInfoResourcesVirus
                        systemInfoResourcesVirus dataframe

--- finished re-building ‘microPopTutorial.Rmd’

+-+microPopTutorial.html
Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
Assertion failure at kmp_runtime.cpp(6918): temp_reg_status_file_name.
OMP: Error #13: Assertion failure at kmp_runtime.cpp(6918).
OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://bugs.llvm.org/.
Killed
--- re-building ‘plottingNetworks.Rmd’ using rmarkdown
Data sets in package 'microPop':

Acetogens               Acetogens dataframe
Bacteroides             Bacteroides dataframe
ButyrateProducers1      ButyrateProducers1 dataframe
ButyrateProducers2      ButyrateProducers2 dataframe
ButyrateProducers3      ButyrateProducers3 dataframe
LactateProducers        LactateProducers dataframe
MFG                     Microbial Functional Group (MFG) dataframes
Methanogens             Methanogens dataframe
NoButyFibreDeg          NoButyFibreDeg dataframe
NoButyStarchDeg         NoButyStarchDeg dataframe
PropionateProducers     PropionateProducers dataframe
Xaa                     Xaa dataframe
Xh2                     Xh2 dataframe
Xsu                     Xsu dataframe
microbeSysInfo          microbeSysInfo
microbeSysInfoHuman     microbeSysInfoHuman dataframe
microbeSysInfoRumen     microbeSysInfoRumen dataframe
resourceSysInfo         resourceSysInfo
resourceSysInfoHuman    resourceSysInfoHuman dataframe
resourceSysInfoRumen    resourceSysInfoRumen dataframe
strainParams            strainParams dataframe
systemInfoMicrobesPhyto
                        systemInfoMicrobesPhyto dataframe
systemInfoMicrobesVirus
                        systemInfoMicrobesVirus dataframe
systemInfoResourcesPhyto
                        systemInfoResourcesPhyto dataframe
systemInfoResourcesVirus
                        systemInfoResourcesVirus dataframe

--- finished re-building ‘plottingNetworks.Rmd’

SUMMARY: processing the following file failed:
  ‘microPopTutorial.Rmd’

Error: Vignette re-building failed.
Execution halted