Running 'testthat.R' [117s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(crosstalkr)
  > 
  > test_check("crosstalkr")
  [ FAIL 1 | WARN 0 | SKIP 12 | PASS 84 ]
  
  ══ Skipped tests (12) ══════════════════════════════════════════════════════════
  • On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
    'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
    'test-utils.R:17:3'
  • relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
  • relies on system file (2): 'test-calc_np.R:1:1',
    'test-node_suppression.R:1:1'
  • skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
    'test-ppi_ingest.R:9:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
  Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x00000000000001dc>), 
      "rb")`: Timeout was reached: [stringdb-static.org] Connection timeout after 10002 ms
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:2
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
    5. │ └─crosstalkr::supported_species()
    6. │   └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
    7. │     └─vroom::vroom(...)
    8. │       └─vroom:::vroom_(...)
    9. ├─base (local) `<fn>`(`<curl>`, "rb")
   10. └─base::open.connection(`<curl>`, "rb")
  
  [ FAIL 1 | WARN 0 | SKIP 12 | PASS 84 ]
  Error: Test failures
  In addition: Warning messages:
  1: In for (nme in names(lhs)) { :
    closing unused connection 7 (https://stringdb-static.org/download/species.v11.5.txt)
  2: In for (nme in names(lhs)) { :
    closing unused connection 6 (https://stringdb-static.org/download/species.v11.5.txt)
  3: In for (nme in names(lhs)) { :
    closing unused connection 5 (https://stringdb-static.org/download/species.v11.5.txt)
  Execution halted