Running 'testthat.R' [187s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(SCpubr)
  ---------------------------------------------------------------
  SCpubr
  
  If you use SCpubr in your research, please cite it accordingly: 
  Blanco-Carmona, E. Generating publication ready visualizations for Single Cell transcriptomics using SCpubr. bioRxiv (2022) doi:10.1101/2022.02.28.482303.
  
  If the package is useful to you, consider leaving a Star in the GitHub repo: https://github.com/enblacar/SCpubr/stargazers 
  
  Keep track of the package updates on Twitter (@Enblacar) or in https://github.com/enblacar/SCpubr/blob/main/NEWS.md 
  
  To suppress this startup message, use: 
  suppressPackageStartupMessages(library('SCpubr'))
  ---------------------------------------------------------------
  > test_check("SCpubr")
  The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
  which was just loaded, will retire in October 2023.
  Please refer to R-spatial evolution reports for details, especially
  https://r-spatial.org/r/2023/05/15/evolution4.html.
  It may be desirable to make the sf package available;
  package maintainers should consider adding sf to Suggests:.
  The sp package is now running under evolution status 2
       (status 2 uses the sf package in place of rgdal)
  
  
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  ! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
  [ FAIL 1 | WARN 2 | SKIP 440 | PASS 90 ]
  
  ══ Skipped tests (440) ═════════════════════════════════════════════════════════
  • On CRAN (440): 'test-do_AlluvialPlot.R:14:5',
    'test-do_AzimuthAnalysisPlot.R:12:5', 'test-do_BarPlot.R:30:5',
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    'test-do_BarPlot.R:209:5', 'test-do_BarPlot.R:219:5',
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    'test-do_BarPlot.R:257:5', 'test-do_BarPlot.R:270:5',
    'test-do_BeeSwarmPlot.R:18:5', 'test-do_BeeSwarmPlot.R:40:5',
    'test-do_BeeSwarmPlot.R:49:5', 'test-do_BeeSwarmPlot.R:59:5',
    'test-do_BeeSwarmPlot.R:70:5', 'test-do_BeeSwarmPlot.R:79:5',
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    'test-do_BeeSwarmPlot.R:108:5', 'test-do_BeeSwarmPlot.R:118:5',
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    'test-do_BoxPlot.R:103:5', 'test-do_BoxPlot.R:112:5',
    'test-do_CellularStatesPlot.R:50:5', 'test-do_CellularStatesPlot.R:78:5',
    'test-do_CellularStatesPlot.R:152:5', 'test-do_CellularStatesPlot.R:284:5',
    'test-do_CellularStatesPlot.R:305:5', 'test-do_CellularStatesPlot.R:327:5',
    'test-do_CellularStatesPlot.R:349:5', 'test-do_CellularStatesPlot.R:415:5',
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    'test-do_CellularStatesPlot.R:478:5', 'test-do_CellularStatesPlot.R:499:5',
    'test-do_CellularStatesPlot.R:519:5', 'test-do_CellularStatesPlot.R:539:5',
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    'test-utils.R:242:5', 'test-utils.R:256:5', 'test-utils.R:268:5',
    'test-utils.R:279:5', 'test-utils.R:289:5', 'test-utils.R:301:5',
    'test-utils.R:310:5', 'test-utils.R:319:5', 'test-utils.R:328:5',
    'test-utils.R:339:5', 'test-utils.R:350:5', 'test-utils.R:364:5',
    'test-utils.R:372:5', 'test-utils.R:381:5', 'test-utils.R:390:5',
    'test-utils.R:403:5', 'test-utils.R:410:5', 'test-utils.R:420:5',
    'test-utils.R:431:5', 'test-utils.R:437:5', 'test-utils.R:446:5',
    'test-utils.R:455:5', 'test-utils.R:469:5', 'test-utils.R:476:5',
    'test-utils.R:483:5', 'test-utils.R:490:5', 'test-utils.R:500:5',
    'test-utils.R:508:5', 'test-utils.R:516:5', 'test-utils.R:526:5',
    'test-utils.R:533:5', 'test-utils.R:543:5', 'test-utils.R:550:5',
    'test-utils.R:558:5', 'test-utils.R:566:5', 'test-utils.R:578:5',
    'test-utils.R:586:5', 'test-utils.R:593:5', 'test-utils.R:601:5',
    'test-utils.R:608:5', 'test-utils.R:616:5', 'test-utils.R:623:5',
    'test-utils.R:631:5', 'test-utils.R:638:5', 'test-utils.R:649:5',
    'test-utils.R:654:5', 'test-utils.R:666:5', 'test-utils.R:674:5',
    'test-utils.R:681:5', 'test-utils.R:691:5', 'test-utils.R:698:5',
    'test-utils.R:754:5', 'test-utils.R:759:5', 'test-utils.R:767:5',
    'test-utils.R:779:5', 'test-utils.R:793:5', 'test-utils.R:827:5',
    'test-utils.R:1112:5', 'test-utils.R:1121:5', 'test-utils.R:1148:5',
    'test-utils.R:1166:5', 'test-utils.R:1173:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-do_FunctionalAnnotationPlot.R:5:5'): do_FunctionalAnnotationPlot: CRAN essential tests ──
  Error in `offspring.tbl_tree_item(.data = .data, .node = .node, tiponly = tiponly, 
      self_include = self_include, ...)`: could not find function "offspring.tbl_tree_item"
  Backtrace:
       ▆
    1. └─SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
    2.   └─SCpubr:::do_EnrichedTermTreePlot(...)
    3.     ├─enrichplot::treeplot(...)
    4.     └─enrichplot::treeplot(...)
    5.       └─enrichplot:::treeplot.enrichResult(x, ...)
    6.         └─enrichplot:::group_tree(...)
    7.           └─enrichplot:::add_cladelab(...)
    8.             └─ggplot2:::`+.gg`(...)
    9.               └─ggplot2:::add_ggplot(e1, e2, e2name)
   10.                 ├─ggplot2::ggplot_add(object, p, objectname)
   11.                 └─ggtree:::ggplot_add.cladelab(object, p, objectname)
   12.                   └─ggtree:::build_cladelabel_df(...)
   13.                     └─base::mapply(...)
   14.                       └─ggtree (local) `<fn>`(...)
   15.                         └─ggtree:::get_cladelabel_position(...)
   16.                           └─ggtree:::get_cladelabel_position_(...)
   17.                             └─tidytree:::offspring.tbl_tree(data, node, self_include = TRUE)
  
  [ FAIL 1 | WARN 2 | SKIP 440 | PASS 90 ]
  Error: Test failures
  Execution halted