Error(s) in re-building vignettes:
--- re-building ‘mpathsenser.Rmd’ using rmarkdown

 *** caught segfault ***
address 0x4, cause 'memory not mapped'
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
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*** recursive gc invocation
*** recursive gc invocation
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*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
*** recursive gc invocation
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*** recursive gc invocation
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Traceback:
 1: guessColName(df, row.names)
 2: sqlColumnToRownames(ret, row.names)
 3: .local(res, n, ...)
 4: dbFetch(rs, n = n, ...)
 5: dbFetch(rs, n = n, ...)
 6: .local(conn, statement, ...)
 7: DBI::dbGetQuery(conn = tmp_db, statement = paste0("SELECT COUNT(*) AS `n` FROM `ProcessedFiles` ",     "WHERE (`file_name` = :file_name ", "AND `participant_id` = :participant_id ",     "AND `study_id` = :study_id)"), params = list(file_name = meta_data$file_name,     participant_id = meta_data$participant_id, study_id = meta_data$study_id))
 8: DBI::dbGetQuery(conn = tmp_db, statement = paste0("SELECT COUNT(*) AS `n` FROM `ProcessedFiles` ",     "WHERE (`file_name` = :file_name ", "AND `participant_id` = :participant_id ",     "AND `study_id` = :study_id)"), params = list(file_name = meta_data$file_name,     participant_id = meta_data$participant_id, study_id = meta_data$study_id))
 9: .import_is_duplicate(db_name = db@dbname, meta_data)
10: import(path = tempdir, db = db, batch_size = 12)
11: eval(expr, envir, enclos)
12: eval(expr, envir, enclos)
13: eval_with_user_handlers(expr, envir, enclos, user_handlers)
14: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers))
15: withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)
16: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler))
17: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)))
18: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,     debug = debug, last = i == length(out), use_try = stop_on_error !=         2L, keep_warning = keep_warning, keep_message = keep_message,     log_echo = log_echo, log_warning = log_warning, output_handler = output_handler,     include_timing = include_timing)
19: evaluate::evaluate(...)
20: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options))
21: in_dir(input_dir(), expr)
22: in_input_dir(evaluate(code, envir = env, new_device = FALSE,     keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options)))
23: eng_r(options)
24: block_exec(params)
25: call_block(x)
26: process_group.block(group)
27: process_group(group)
28: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0") &&         !xfun::check_old_package("learnr", "0.11.3")) rlang::entrace(e))
29: withCallingHandlers(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0") &&         !xfun::check_old_package("learnr", "0.11.3")) rlang::entrace(e)),     error = function(e) {        setwd(wd)        write_utf8(res, output %n% stdout())        message("\nQuitting from lines ", paste(current_lines(i),             collapse = "-"), if (labels[i] != "")             sprintf(" [%s]", labels[i]), sprintf(" (%s)", knit_concord$get("infile")))    })
30: process_file(text, output)
31: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
32: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     output_dir = getwd(), ...)
33: vweave_rmarkdown(...)
34: engine$weave(file, quiet = quiet, encoding = enc)
35: doTryCatch(return(expr), name, parentenv, handler)
36: tryCatchOne(expr, names, parentenv, handlers[[1L]])
37: tryCatchList(expr, classes, parentenv, handlers)
38: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
39: tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/mpathsenser.Rcheck/vign_test/mpathsenser",     skip = TRUE, ser_elibs = "/tmp/Rtmp3qd65X/fileed5e84e41a5b6.rds")
An irrecoverable exception occurred. R is aborting now ...