Running ‘testthat.R’ [30m/52m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(dynamicSDM)
  > 
  > test_check("dynamicSDM")
  block.col not specified. Model will be fit on all occ.data.
  weights.col not specified. All records equally weighted.
  weights.col not specified. All records equally weighted.
  block.col not specified. Model will be fit on all occ.data.
  weights.col not specified. All records equally weighted.
  interaction.depth not set. Optimisation taking place.
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  block.col not specified. Model will be fit on all occ.data.
  weights.col not specified. All records equally weighted.
  block.col not specified. Model will be fit on all occ.data.
  weights.col not specified. All records equally weighted.
  weights.col not specified. All records equally weighted.
  interaction.depth not set. Optimisation taking place.
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  block.col not specified. Model will be fit on all occ.data.
  weights.col not specified. All records equally weighted.
  interaction.depth not set. Optimisation taking place.
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  Using 5000 trees...
  
  weights.col not specified. All records equally weighted.
  interaction.depth not set. Optimisation taking place.
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  No sdm.thresh. Default 0.5
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  Using 1 trees...
  
  spatial.layer is missing. No blocking by spatial features.
  spatial.layer is missing. No blocking by spatial features.
  temporal.block is missing. No blocking by temporal features.
  omitting any duplicate records
  omitting any species records with coordinates containing NA
  omitting any species records with dates containing NA
  any records with invalid dates excluded
  any records with invalid co-ordinates excluded
  any records with invalid co-ordinates excluded
  omitting any species records with coordinates containing NA
  omitting any species records with dates containing NA
  omitting any duplicate records
  any records with invalid co-ordinates excluded
  any records with invalid dates excluded
  omitting any species records with coordinates containing NA
  omitting any species records with dates containing NA
  omitting any duplicate records
  any records with invalid co-ordinates excluded
  any records with invalid dates excluded
  spatial.ext could not be used as a mask.
  spatial.ext could not be used as a mask.
  spatial.ext could not be used as a mask.
  spatial.ext could not be used as a mask.
  spatial.ext could not be used as a mask.
  spatial.ext could not be used as a mask.
  ********************************************** 
   Beginning Spatial Thinning.
   Script Started at: Sun Jun 11 02:46:25 2023
  lat.long.thin.count
  124 
    1 
  [1] "Maximum number of records after thinning: 124"
  [1] "Number of data.frames with max records: 1"
  [1] "No files written for this run."
  ********************************************** 
   Beginning Spatial Thinning.
   Script Started at: Sun Jun 11 02:46:27 2023
  lat.long.thin.count
  123 
    1 
  [1] "Maximum number of records after thinning: 123"
  [1] "Number of data.frames with max records: 1"
  [1] "No files written for this run."
  ********************************************** 
   Beginning Spatial Thinning.
   Script Started at: Sun Jun 11 02:46:29 2023
  lat.long.thin.count
  125 
    1 
  [1] "Maximum number of records after thinning: 125"
  [1] "Number of data.frames with max records: 1"
  [1] "No files written for this run."
  ********************************************** 
   Beginning Spatial Thinning.
   Script Started at: Sun Jun 11 02:46:30 2023
  lat.long.thin.count
  123 
    1 
  [1] "Maximum number of records after thinning: 123"
  [1] "Number of data.frames with max records: 1"
  [1] "No files written for this run."
  ********************************************** 
   Beginning Spatial Thinning.
   Script Started at: Sun Jun 11 02:46:32 2023
  lat.long.thin.count
  124 
    1 
  [1] "Maximum number of records after thinning: 124"
  [1] "Number of data.frames with max records: 1"
  [1] "No files written for this run."
  ********************************************** 
   Beginning Spatial Thinning.
   Script Started at: Sun Jun 11 02:46:35 2023
  lat.long.thin.count
  124 
    1 
  [1] "Maximum number of records after thinning: 124"
  [1] "Number of data.frames with max records: 1"
  [1] "No files written for this run."
  ********************************************** 
   Beginning Spatial Thinning.
   Script Started at: Sun Jun 11 02:46:37 2023
  lat.long.thin.count
  64 
   1 
  [1] "Maximum number of records after thinning: 64"
  [1] "Number of data.frames with max records: 1"
  [1] "No files written for this run."
  ********************************************** 
   Beginning Spatial Thinning.
   Script Started at: Sun Jun 11 02:46:38 2023
  lat.long.thin.count
  62 
   1 
  [1] "Maximum number of records after thinning: 62"
  [1] "Number of data.frames with max records: 1"
  [1] "No files written for this run."