Running ‘testthat.R’ [20m/30m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(phacking)
  > 
  > test_check("phacking")
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000302 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.02 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 1: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 1: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 1: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 1: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 1: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 1: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 1: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 1: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 1: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 1: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 1: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 1.218 seconds (Warm-up)
  Chain 1:                0.969 seconds (Sampling)
  Chain 1:                2.187 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 0.000187 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.87 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 2: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 2: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 2: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 2: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 2: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 2: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 2: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 2: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 2: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 2: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 2: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 1.58 seconds (Warm-up)
  Chain 2:                1.46 seconds (Sampling)
  Chain 2:                3.04 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 0.000179 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 1.79 seconds.
  Chain 3: Adjust your expectations accordingly!
  Chain 3: 
  Chain 3: 
  Chain 3: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 3: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 3: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 3: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 3: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 3: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 3: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 3: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 3: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 3: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 3: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 3: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 3: 
  Chain 3:  Elapsed Time: 1.181 seconds (Warm-up)
  Chain 3:                0.883 seconds (Sampling)
  Chain 3:                2.064 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 0.000158 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 1.58 seconds.
  Chain 4: Adjust your expectations accordingly!
  Chain 4: 
  Chain 4: 
  Chain 4: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 4: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 4: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 4: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 4: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 4: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 4: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 4: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 4: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 4: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 4: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 4: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 4: 
  Chain 4:  Elapsed Time: 1.146 seconds (Warm-up)
  Chain 4:                1.298 seconds (Sampling)
  Chain 4:                2.444 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.00021 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.1 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 1: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 1: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 1: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 1: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 1: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 1: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 1: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 1: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 1: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 1: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 1: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 2.378 seconds (Warm-up)
  Chain 1:                2.181 seconds (Sampling)
  Chain 1:                4.559 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 0.00018 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.8 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 2: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 2: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 2: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 2: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 2: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 2: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 2: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 2: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 2: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 2: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 2: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 1.893 seconds (Warm-up)
  Chain 2:                2.119 seconds (Sampling)
  Chain 2:                4.012 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 0.000174 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 1.74 seconds.
  Chain 3: Adjust your expectations accordingly!
  Chain 3: 
  Chain 3: 
  Chain 3: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 3: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 3: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 3: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 3: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 3: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 3: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 3: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 3: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 3: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 3: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 3: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 3: 
  Chain 3:  Elapsed Time: 1.835 seconds (Warm-up)
  Chain 3:                1.54 seconds (Sampling)
  Chain 3:                3.375 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 0.000172 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 1.72 seconds.
  Chain 4: Adjust your expectations accordingly!
  Chain 4: 
  Chain 4: 
  Chain 4: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 4: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 4: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 4: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 4: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 4: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 4: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 4: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 4: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 4: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 4: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 4: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 4: 
  Chain 4:  Elapsed Time: 2.734 seconds (Warm-up)
  Chain 4:                1.934 seconds (Sampling)
  Chain 4:                4.668 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.4 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 1: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 1: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 1: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 1: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 1: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 1: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 1: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 1: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 1: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 1: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 1: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.267 seconds (Warm-up)
  Chain 1:                0.098 seconds (Sampling)
  Chain 1:                0.365 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 2: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 2: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 2: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 2: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 2: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 2: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 2: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 2: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 2: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 2: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 2: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 415.725 seconds (Warm-up)
  Chain 2:                1.292 seconds (Sampling)
  Chain 2:                417.017 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.3e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
  Chain 3: Adjust your expectations accordingly!
  Chain 3: 
  Chain 3: 
  Chain 3: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 3: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 3: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 3: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 3: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Chain 3: Iteration: 1000 / 2000 [ 50%]  (Warmup)
  Chain 3: Iteration: 1001 / 2000 [ 50%]  (Sampling)
  Chain 3: Iteration: 1200 / 2000 [ 60%]  (Sampling)
  Chain 3: Iteration: 1400 / 2000 [ 70%]  (Sampling)
  Chain 3: Iteration: 1600 / 2000 [ 80%]  (Sampling)
  Chain 3: Iteration: 1800 / 2000 [ 90%]  (Sampling)
  Chain 3: Iteration: 2000 / 2000 [100%]  (Sampling)
  Chain 3: 
  Chain 3:  Elapsed Time: 0.333 seconds (Warm-up)
  Chain 3:                0.205 seconds (Sampling)
  Chain 3:                0.538 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1.2e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
  Chain 4: Adjust your expectations accordingly!
  Chain 4: 
  Chain 4: 
  Chain 4: Iteration:    1 / 2000 [  0%]  (Warmup)
  Chain 4: Iteration:  200 / 2000 [ 10%]  (Warmup)
  Chain 4: Iteration:  400 / 2000 [ 20%]  (Warmup)
  Chain 4: Iteration:  600 / 2000 [ 30%]  (Warmup)
  Chain 4: Iteration:  800 / 2000 [ 40%]  (Warmup)
  Killed