Running ‘testthat.R’ [11s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(seeker)
  > 
  > test_check('seeker')
  qs 0.25.5
  reading in files with read_tsv
  1 2 
  transcripts missing from tx2gene: 116471
  summarizing abundance
  summarizing counts
  summarizing length
  [ FAIL 2 | WARN 1 | SKIP 15 | PASS 29 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (15)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-fetch.R:12:3'): fetchMetadata ────────────────────────────────
  `metadataObs` (`actual`) not equal to `metadataExp` (`expected`).
  
       names(actual)                | names(expected)                  
   [1] "run_accession"              - "study_accession"            [1] 
   [2] "sample_accession"           | "sample_accession"           [2] 
   [3] "secondary_sample_accession" | "secondary_sample_accession" [3] 
   [4] "sample_alias"               | "sample_alias"               [4] 
   [5] "sample_title"               | "sample_title"               [5] 
   [6] "experiment_accession"       | "experiment_accession"       [6] 
   [7] "study_accession"            - "run_accession"              [7] 
   [8] "fastq_md5"                  | "fastq_md5"                  [8] 
   [9] "fastq_ftp"                  | "fastq_ftp"                  [9] 
  [10] "fastq_aspera"               | "fastq_aspera"               [10]
  ── Failure ('test-fetch.R:23:3'): fetchMetadata ────────────────────────────────
  `metadataObs2` (`actual`) not equal to `metadataExp2` (`expected`).
  
       names(actual)                | names(expected)                  
   [1] "run_accession"              - "study_accession"            [1] 
   [2] "sample_accession"           | "sample_accession"           [2] 
   [3] "secondary_sample_accession" | "secondary_sample_accession" [3] 
   [4] "sample_alias"               | "sample_alias"               [4] 
   [5] "sample_title"               | "sample_title"               [5] 
   [6] "experiment_accession"       | "experiment_accession"       [6] 
   [7] "study_accession"            - "run_accession"              [7] 
   [8] "fastq_md5"                  | "fastq_md5"                  [8] 
   [9] "fastq_ftp"                  | "fastq_ftp"                  [9] 
  [10] "fastq_aspera"               | "fastq_aspera"               [10]
  
  [ FAIL 2 | WARN 1 | SKIP 15 | PASS 29 ]
  Error: Test failures
  Execution halted