Running ‘testthat.R’ [5s/86s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(avidaR)
  > 
  > test_check("avidaR")
  [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_get_db_summary.R:5:3'): get_db_summary ─────────────────────────
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_db_summary.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_genome_id_from_genome_seq.R:5:3'): get_genome_id_from_genome_seq ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_genome_id_from_genome_seq.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_genome_id_from_logic_operation.R:5:3'): get_genome_id_from_logic_operation ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_genome_id_from_logic_operation.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_genome_id_from_phenotype_id.R:5:3'): get_genome_id_from_phenotype_id ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_genome_id_from_phenotype_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_genome_id_from_transcriptome_id.R:5:3'): get_genome_id_from_transcriptome_id ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_genome_id_from_transcriptome_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_genome_id_of_wild_type_organisms.R:5:3'): get_genome_id_of_wild_type_organisms ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_genome_id_of_wild_type_organisms.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_genome_seq_from_genome_id.R:5:3'): get_genome_seq_from_genome_id ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_genome_seq_from_genome_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_logic_operation_from_phenotype_id.R:5:3'): get_logic_operation_from_phenotype ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_logic_operation_from_phenotype_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_mutant_at_pos.R:5:3'): get_mutant_at_pos ───────────────────
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_mutant_at_pos.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_phenotype_id_from_genome_id.R:5:3'): get_phenotype_id_from_genome_id ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_phenotype_id_from_genome_seq.R:5:3'): get_phenotype_id_from_genome_seq ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_seq.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_phenotype_id_from_logic_operation.R:5:3'): get_phenotype_id_from_logic_operation ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_logic_operation.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_phenotype_id_from_transcriptome_id.R:5:3'): get_phenotype_id_from_transcriptome_id ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_transcriptome_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_tandem_id_from_genome_id.R:5:3'): get_tandem_id_from_genome_id ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_tandem_id_from_genome_seq.R:5:3'): get_tandem_id_from_genome_seq ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_seq.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_tandem_id_from_logic_operation.R:5:3'): get_tandem_id_from_logic_operation ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_logic_operation.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_tandem_id_from_phenotype_id.R:5:3'): get_tandem_id_from_phenotype ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_phenotype_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_tandem_seq_from_tandem_id.R:5:3'): get_tandem_seq_from_tandem_id ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_tandem_seq_from_tandem_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_transcriptome_id_from_genome_id.R:5:3'): get_transcriptome_id_from_genome_id ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_transcriptome_id_from_genome_seq.R:5:3'): get_transcriptome_id_from_genome_seq ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_seq.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_transcriptome_id_from_logic_operation.R:5:3'): get_transcriptome_id_from_logic_operation ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_logic_operation.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_transcriptome_id_from_phenotype_id.R:5:3'): get_transcriptome_id_from_phenotype ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_phenotype_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_get_transcriptome_seq_from_transcriptome_id.R:5:3'): get_transcriptome_seq_from_transcriptome_id ──
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_get_transcriptome_seq_from_transcriptome_id.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_ontology.R:5:3'): ongology ─────────────────────────────────────
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_ontology.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_plot_transcriptome.R:5:3'): plot_transcriptome ─────────────────
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_plot_transcriptome.R:5:2
   2.   └─avidaR:::server_api_get(...)
  ── Error ('test_set_access_options.R:7:3'): set_access_options ─────────────────
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      ▆
   1. └─triplestore$set_access_options(...) at test_set_access_options.R:7:2
   2.   └─avidaR:::server_api_get(...)
  
  [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]
  Error: Test failures
  Execution halted