Running ‘testthat.R’ [325s/309s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(CRE)
  > 
  > test_check("CRE")
  2023-04-16 15:26:16.510071 gimli2 2406785 CRE cre INFO:  Starting rules discovery...
  2023-04-16 15:26:16.603319 gimli2 2406785 CRE cre INFO:  Starting rules discovery...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-16 15:26:50.919756 gimli2 2406785 CRE cre INFO:  Done with rules discovery. (WC: 34.313 seconds.)
  2023-04-16 15:26:50.939198 gimli2 2406785 CRE cre INFO:  Starting inference...
  2023-04-16 15:26:51.290139 gimli2 2406785 CRE cre INFO:  Starting rules discovery...
  2023-04-16 15:27:23.390899 gimli2 2406785 CRE cre INFO:  Done with rules discovery. (WC: 32.097 seconds.)
  2023-04-16 15:27:23.394197 gimli2 2406785 CRE cre INFO:  Starting inference...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-16 15:27:31.701674 gimli2 2406785 CRE cre INFO:  Done with inference. (WC: 8.305 seconds .)
  2023-04-16 15:27:31.704295 gimli2 2406785 CRE cre INFO:  Done with running CRE function!(WC: 40.415 seconds.)
  2023-04-16 15:27:31.706626 gimli2 2406785 CRE cre INFO:  Done!
  2023-04-16 15:27:31.726081 gimli2 2406785 CRE cre INFO:  Starting rules discovery...
  2023-04-16 15:27:38.075628 gimli2 2406785 CRE cre INFO:  Done with rules discovery. (WC: 6.346 seconds.)
  2023-04-16 15:27:38.07806 gimli2 2406785 CRE cre INFO:  Starting inference...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-16 15:27:43.975245 gimli2 2406785 CRE cre INFO:  Done with inference. (WC: 5.894 seconds .)
  2023-04-16 15:27:43.978557 gimli2 2406785 CRE cre INFO:  Done with running CRE function!(WC: 12.254 seconds.)
  2023-04-16 15:27:43.981068 gimli2 2406785 CRE cre INFO:  Done!
  2023-04-16 15:27:44.010822 gimli2 2406785 CRE cre INFO:  Starting rules discovery...
  2023-04-16 15:27:48.993467 gimli2 2406785 CRE cre INFO:  Done with rules discovery. (WC: 4.957 seconds.)
  2023-04-16 15:27:48.99613 gimli2 2406785 CRE cre INFO:  Starting inference...
  2023-04-16 15:27:54.840205 gimli2 2406785 CRE cre INFO:  Done with inference. (WC: 5.841 seconds .)
  2023-04-16 15:27:54.842691 gimli2 2406785 CRE cre INFO:  Done with running CRE function!(WC: 10.834 seconds.)
  2023-04-16 15:27:54.844904 gimli2 2406785 CRE cre INFO:  Done!
  2023-04-16 15:27:54.86026 gimli2 2406785 CRE cre INFO:  Starting rules discovery...
  2023-04-16 15:27:54.862428 gimli2 2406785 CRE cre INFO:  Using the provided ITE estimations...
  2023-04-16 15:27:55.434491 gimli2 2406785 CRE cre INFO:  Done with rules discovery. (WC: 0.567 seconds.)
  2023-04-16 15:27:55.440009 gimli2 2406785 CRE cre INFO:  Starting inference...
  2023-04-16 15:27:55.442176 gimli2 2406785 CRE cre INFO:  Skipped generating ITE.The provided ITE will be used.
  2023-04-16 15:27:55.47362 gimli2 2406785 CRE cre INFO:  Done with inference. (WC: 0.032 seconds .)
  2023-04-16 15:27:55.477875 gimli2 2406785 CRE cre INFO:  Done with running CRE function!(WC: 0.625 seconds.)
  2023-04-16 15:27:55.4801 gimli2 2406785 CRE cre INFO:  Done!
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fca4c1f7990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Using 11 control variables.
  Using 10 potential effect moderators.
  
  Beginning MCMC:
  iteration: 0 sigma: 1
  iteration: 100 sigma: 0.939757
  iteration: 200 sigma: 0.790513
  iteration: 300 sigma: 0.861269
  iteration: 400 sigma: 0.801012
  iteration: 500 sigma: 0.835339
  iteration: 600 sigma: 0.782724
  iteration: 700 sigma: 0.841266
  iteration: 800 sigma: 0.809863
  iteration: 900 sigma: 0.866562
  time for loop: 6
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Using 11 control variables.
  Using 10 potential effect moderators.
  
  Beginning MCMC:
  iteration: 0 sigma: 1
  iteration: 100 sigma: 0.833804
  iteration: 200 sigma: 0.818013
  iteration: 300 sigma: 0.773024
  iteration: 400 sigma: 0.817209
  iteration: 500 sigma: 0.827118
  iteration: 600 sigma: 0.795232
  iteration: 700 sigma: 0.798065
  iteration: 800 sigma: 0.920424
  iteration: 900 sigma: 0.808557
  time for loop: 11
  Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : 
    contrasts can be applied only to factors with 2 or more levels
  Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : 
    contrasts can be applied only to factors with 2 or more levels
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 243 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-discover_rules.R:53:3'): discover_rules works as expected! ─────
  Error in `value[[3L]](cond)`: Combination of `cutoff` and `pfer` not allowed. 
  Try to decrease the `cutoff` or increase the `pfer`. 
  See Stability Selection documentation for further details. 
  
  Original Error message: Error in run_stabsel(fitter = fit_model, args.fitter = args.fitfun, n = n, : 'fitfun' must return a list with a named element called 'selected', and an optional second element called 'path'
  
  Backtrace:
      ▆
   1. └─CRE:::discover_rules(X, ite, method_params, hyper_params) at test-discover_rules.R:53:2
   2.   └─CRE:::select_rules(...)
   3.     └─base::tryCatch(...)
   4.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   5.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   6.           └─value[[3L]](cond)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 243 ]
  Error: Test failures
  Execution halted