Running ‘testthat.R’ [326s/311s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(CRE)
  > 
  > test_check("CRE")
  2023-04-11 15:26:33.111681 gimli2 1548258 CRE cre INFO:  Starting rules discovery...
  2023-04-11 15:26:33.147188 gimli2 1548258 CRE cre INFO:  Starting rules discovery...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-11 15:27:09.00071 gimli2 1548258 CRE cre INFO:  Done with rules discovery. (WC: 35.850 seconds.)
  2023-04-11 15:27:09.033749 gimli2 1548258 CRE cre INFO:  Starting inference...
  2023-04-11 15:27:09.497181 gimli2 1548258 CRE cre INFO:  Starting rules discovery...
  2023-04-11 15:27:42.456712 gimli2 1548258 CRE cre INFO:  Done with rules discovery. (WC: 32.956 seconds.)
  2023-04-11 15:27:42.460299 gimli2 1548258 CRE cre INFO:  Starting inference...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-11 15:27:50.638681 gimli2 1548258 CRE cre INFO:  Done with inference. (WC: 8.175 seconds .)
  2023-04-11 15:27:50.64122 gimli2 1548258 CRE cre INFO:  Done with running CRE function!(WC: 41.145 seconds.)
  2023-04-11 15:27:50.645082 gimli2 1548258 CRE cre INFO:  Done!
  2023-04-11 15:27:50.66696 gimli2 1548258 CRE cre INFO:  Starting rules discovery...
  2023-04-11 15:27:56.691843 gimli2 1548258 CRE cre INFO:  Done with rules discovery. (WC: 6.022 seconds.)
  2023-04-11 15:27:56.694888 gimli2 1548258 CRE cre INFO:  Starting inference...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-11 15:28:04.07288 gimli2 1548258 CRE cre INFO:  Done with inference. (WC: 7.375 seconds .)
  2023-04-11 15:28:04.075777 gimli2 1548258 CRE cre INFO:  Done with running CRE function!(WC: 13.410 seconds.)
  2023-04-11 15:28:04.078305 gimli2 1548258 CRE cre INFO:  Done!
  2023-04-11 15:28:04.104344 gimli2 1548258 CRE cre INFO:  Starting rules discovery...
  2023-04-11 15:28:09.533279 gimli2 1548258 CRE cre INFO:  Done with rules discovery. (WC: 5.425 seconds.)
  2023-04-11 15:28:09.536258 gimli2 1548258 CRE cre INFO:  Starting inference...
  2023-04-11 15:28:15.706309 gimli2 1548258 CRE cre INFO:  Done with inference. (WC: 6.166 seconds .)
  2023-04-11 15:28:15.72548 gimli2 1548258 CRE cre INFO:  Done with running CRE function!(WC: 11.639 seconds.)
  2023-04-11 15:28:15.728072 gimli2 1548258 CRE cre INFO:  Done!
  2023-04-11 15:28:15.754191 gimli2 1548258 CRE cre INFO:  Starting rules discovery...
  2023-04-11 15:28:15.756811 gimli2 1548258 CRE cre INFO:  Using the provided ITE estimations...
  2023-04-11 15:28:16.337411 gimli2 1548258 CRE cre INFO:  Done with rules discovery. (WC: 0.581 seconds.)
  2023-04-11 15:28:16.340162 gimli2 1548258 CRE cre INFO:  Starting inference...
  2023-04-11 15:28:16.342705 gimli2 1548258 CRE cre INFO:  Skipped generating ITE.The provided ITE will be used.
  2023-04-11 15:28:16.366178 gimli2 1548258 CRE cre INFO:  Done with inference. (WC: 0.021 seconds .)
  2023-04-11 15:28:16.369471 gimli2 1548258 CRE cre INFO:  Done with running CRE function!(WC: 0.631 seconds.)
  2023-04-11 15:28:16.374143 gimli2 1548258 CRE cre INFO:  Done!
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7f0809e7c990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Using 11 control variables.
  Using 10 potential effect moderators.
  
  Beginning MCMC:
  iteration: 0 sigma: 1
  iteration: 100 sigma: 0.939757
  iteration: 200 sigma: 0.790513
  iteration: 300 sigma: 0.861269
  iteration: 400 sigma: 0.801012
  iteration: 500 sigma: 0.835339
  iteration: 600 sigma: 0.782724
  iteration: 700 sigma: 0.841266
  iteration: 800 sigma: 0.809863
  iteration: 900 sigma: 0.866562
  time for loop: 7
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Using 11 control variables.
  Using 10 potential effect moderators.
  
  Beginning MCMC:
  iteration: 0 sigma: 1
  iteration: 100 sigma: 0.833804
  iteration: 200 sigma: 0.818013
  iteration: 300 sigma: 0.773024
  iteration: 400 sigma: 0.817209
  iteration: 500 sigma: 0.827118
  iteration: 600 sigma: 0.795232
  iteration: 700 sigma: 0.798065
  iteration: 800 sigma: 0.920424
  iteration: 900 sigma: 0.808557
  time for loop: 10
  Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : 
    contrasts can be applied only to factors with 2 or more levels
  Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : 
    contrasts can be applied only to factors with 2 or more levels
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 243 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-discover_rules.R:53:3'): discover_rules works as expected! ─────
  Error in `value[[3L]](cond)`: Combination of `cutoff` and `pfer` not allowed. 
  Try to decrease the `cutoff` or increase the `pfer`. 
  See Stability Selection documentation for further details. 
  
  Original Error message: Error in run_stabsel(fitter = fit_model, args.fitter = args.fitfun, n = n, : 'fitfun' must return a list with a named element called 'selected', and an optional second element called 'path'
  
  Backtrace:
      ▆
   1. └─CRE:::discover_rules(X, ite, method_params, hyper_params) at test-discover_rules.R:53:2
   2.   └─CRE:::select_rules(...)
   3.     └─base::tryCatch(...)
   4.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   5.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   6.           └─value[[3L]](cond)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 243 ]
  Error: Test failures
  Execution halted