Running ‘testthat.R’ [477s/363s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(CRE)
  > 
  > test_check("CRE")
  2023-04-07 05:20:08.157841 gimli 1942146 CRE cre INFO:  Starting rules discovery...
  2023-04-07 05:20:08.20366 gimli 1942146 CRE cre INFO:  Starting rules discovery...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-07 05:20:55.078593 gimli 1942146 CRE cre INFO:  Done with rules discovery. (WC: 46.871 seconds.)
  2023-04-07 05:20:55.099804 gimli 1942146 CRE cre INFO:  Starting inference...
  2023-04-07 05:20:55.841702 gimli 1942146 CRE cre INFO:  Starting rules discovery...
  2023-04-07 05:21:40.490703 gimli 1942146 CRE cre INFO:  Done with rules discovery. (WC: 44.645 seconds.)
  2023-04-07 05:21:40.51142 gimli 1942146 CRE cre INFO:  Starting inference...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-07 05:21:48.293704 gimli 1942146 CRE cre INFO:  Done with inference. (WC: 7.778 seconds .)
  2023-04-07 05:21:48.297558 gimli 1942146 CRE cre INFO:  Done with running CRE function!(WC: 52.458 seconds.)
  2023-04-07 05:21:48.301068 gimli 1942146 CRE cre INFO:  Done!
  2023-04-07 05:21:48.326164 gimli 1942146 CRE cre INFO:  Starting rules discovery...
  2023-04-07 05:21:54.119906 gimli 1942146 CRE cre INFO:  Done with rules discovery. (WC: 5.791 seconds.)
  2023-04-07 05:21:54.123357 gimli 1942146 CRE cre INFO:  Starting inference...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-07 05:22:01.70938 gimli 1942146 CRE cre INFO:  Done with inference. (WC: 7.574 seconds .)
  2023-04-07 05:22:01.713382 gimli 1942146 CRE cre INFO:  Done with running CRE function!(WC: 13.389 seconds.)
  2023-04-07 05:22:01.717032 gimli 1942146 CRE cre INFO:  Done!
  2023-04-07 05:22:01.746523 gimli 1942146 CRE cre INFO:  Starting rules discovery...
  2023-04-07 05:22:07.08119 gimli 1942146 CRE cre INFO:  Done with rules discovery. (WC: 5.331 seconds.)
  2023-04-07 05:22:07.084725 gimli 1942146 CRE cre INFO:  Starting inference...
  2023-04-07 05:22:12.332649 gimli 1942146 CRE cre INFO:  Done with inference. (WC: 5.244 seconds .)
  2023-04-07 05:22:12.336214 gimli 1942146 CRE cre INFO:  Done with running CRE function!(WC: 10.592 seconds.)
  2023-04-07 05:22:12.339528 gimli 1942146 CRE cre INFO:  Done!
  2023-04-07 05:22:12.353014 gimli 1942146 CRE cre INFO:  Starting rules discovery...
  2023-04-07 05:22:12.356419 gimli 1942146 CRE cre INFO:  Using the provided ITE estimations...
  2023-04-07 05:22:13.162474 gimli 1942146 CRE cre INFO:  Done with rules discovery. (WC: 0.806 seconds.)
  2023-04-07 05:22:13.165635 gimli 1942146 CRE cre INFO:  Starting inference...
  2023-04-07 05:22:13.168748 gimli 1942146 CRE cre INFO:  Skipped generating ITE.The provided ITE will be used.
  2023-04-07 05:22:13.193298 gimli 1942146 CRE cre INFO:  Done with inference. (WC: 0.024 seconds .)
  2023-04-07 05:22:13.197 gimli 1942146 CRE cre INFO:  Done with running CRE function!(WC: 0.846 seconds.)
  2023-04-07 05:22:13.200469 gimli 1942146 CRE cre INFO:  Done!
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7ff5bcffc990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Using 11 control variables.
  Using 10 potential effect moderators.
  
  Beginning MCMC:
  iteration: 0 sigma: 1
  iteration: 100 sigma: 0.939757
  iteration: 200 sigma: 0.790513
  iteration: 300 sigma: 0.861269
  iteration: 400 sigma: 0.801012
  iteration: 500 sigma: 0.835339
  iteration: 600 sigma: 0.782724
  iteration: 700 sigma: 0.841266
  iteration: 800 sigma: 0.809863
  iteration: 900 sigma: 0.866562
  time for loop: 8
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Using 11 control variables.
  Using 10 potential effect moderators.
  
  Beginning MCMC:
  iteration: 0 sigma: 1
  iteration: 100 sigma: 0.833804
  iteration: 200 sigma: 0.818013
  iteration: 300 sigma: 0.773024
  iteration: 400 sigma: 0.817209
  iteration: 500 sigma: 0.827118
  iteration: 600 sigma: 0.795232
  iteration: 700 sigma: 0.798065
  iteration: 800 sigma: 0.920424
  iteration: 900 sigma: 0.808557
  time for loop: 12
  Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : 
    contrasts can be applied only to factors with 2 or more levels
  Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : 
    contrasts can be applied only to factors with 2 or more levels
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 243 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-discover_rules.R:53:3'): discover_rules works as expected! ─────
  Error in `value[[3L]](cond)`: Combination of `cutoff` and `pfer` not allowed. 
  Try to decrease the `cutoff` or increase the `pfer`. 
  See Stability Selection documentation for further details. 
  
  Original Error message: Error in run_stabsel(fitter = fit_model, args.fitter = args.fitfun, n = n, : 'fitfun' must return a list with a named element called 'selected', and an optional second element called 'path'
  
  Backtrace:
      ▆
   1. └─CRE:::discover_rules(X, ite, method_params, hyper_params) at test-discover_rules.R:53:2
   2.   └─CRE:::select_rules(...)
   3.     └─base::tryCatch(...)
   4.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   5.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   6.           └─value[[3L]](cond)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 243 ]
  Error: Test failures
  Execution halted