Error(s) in re-building vignettes:
--- re-building ‘applications.Rmd’ using rmarkdown
Quitting from lines 57-64 (applications.Rmd) 
Error: processing vignette 'applications.Rmd' failed with diagnostics:
polygon edge not found
--- failed re-building ‘applications.Rmd’

--- re-building ‘data.tree.Rmd’ using rmarkdown
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  no font could be found for family "Arial"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  font "Times-Roman" could not be found for family "serif"
--- finished re-building ‘data.tree.Rmd’

SUMMARY: processing the following file failed:
  ‘applications.Rmd’

Error: Vignette re-building failed.
Execution halted