'LazyData' is specified without a 'data' directory
Note: found 467 marked UTF-8 strings
File ‘RSKC/libs/RSKC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘Vdgraph’
Unknown package ‘Vdgraph’ in Rd xrefs
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘h2o’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘MatrixExtra’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘magrittr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘bitops’ ‘httpuv’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘mc2d’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Found the following significant warnings:
  rsyslog.h:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rsyslog.c:50:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/rsyslog.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘readr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘RTextTools/libs/RTextTools.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following files/directories:
  ‘test_addPageBreak.doc’ ‘test_addPlot.doc’ ‘test_addSessionInfo.doc’
  ‘test_addTable.doc’
Namespaces in Imports field not imported from:
  ‘httr’ ‘logger’
  All declared Imports should be used.
GNU make is a SystemRequirements.
Namespaces in Imports field not imported from:
  ‘DescTools’ ‘MASS’ ‘gridExtra’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘RcppProgress’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘memoise’ ‘tidyr’
  All declared Imports should be used.
Note: found 37 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Namespace in Imports field not imported from: ‘curl’
  All declared Imports should be used.
Note: found 2023 marked Latin-1 strings
  Note: found 17 marked UTF-8 strings
Package suggested but not available for checking: ‘cmdstanr’
Specified C++14: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘lubridate’ ‘rstantools’
  All declared Imports should be used.
Unknown package ‘cmdstanr’ in Rd xrefs
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘RQuantLib’
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following files/directories:
  ‘Tsttwalk.dat’
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) tracker.Rd:70: Escaped LaTeX specials: \&
checkRd: (-1) tracker.Rd:73: Escaped LaTeX specials: \&
S3 methods shown with full name in documentation object 'printHTML.trackInfo':
  ‘printHTML.trackInfo’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Found the following files/directories:
  ‘results’
checkRd: (-1) run.jags.study.Rd:67: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package which this enhances but not available for checking: ‘glmmADMB’
Namespace in Imports field not imported from: ‘XML’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘cli’ ‘withr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘gpuR’
Problems with news in ‘NEWS.md’:
No news entries found.
File ‘RVowpalWabbit/libs/RVowpalWabbit.so’:
  Found ‘__sprintf_chk’, possibly from ‘sprintf’ (C)
    Object: ‘parse_args.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘rWCVPdata’
Note: found 16 marked UTF-8 strings
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
File ‘rwfec/libs/rwfec.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Note: found 4250 marked UTF-8 strings
Note: found 6 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) mapBubbles.Rd:62: Escaped LaTeX specials: \$
Malformed Title field: should not end in a period.
Note: found 426306 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
ggplot:
  function(data, mapping, ..., environment)
ggplot.qqnorm.spss:
  function(x, plottype, line, l.col, ...)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘R6’ ‘mgcv’
  All declared Imports should be used.
checkRd: (-1) BootsChapt.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) SemiparChangePoint.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) schapt.Rd:44: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Note: found 37 marked Latin-1 strings
  Note: found 172 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘CARBayesdata’ ‘MASS’ ‘nimble’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Note: found 63 marked Latin-1 strings
Note: found 4 marked UTF-8 strings
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Note: found 3 marked Latin-1 strings
Note: found 120 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘mvtnorm’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  Gen_fun.h:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gen_fun.c:121:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  IFscratch.h:64:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  load_IFscratch.c:64:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/samon.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Found the following significant warnings:
  init.h:28:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.h:29:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/SamplerCompare.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
* used Fortran compiler: ‘GNU Fortran (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) SAM.Rd:67: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:59: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:84: Escaped LaTeX specials: \# \$
checkRd: (-1) samr.Rd:88: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:92: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) samr.assess.samplesize.plot.Rd:12: Escaped LaTeX specials: \#
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘networkTomography’
Note: found 6 marked UTF-8 strings
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
File ‘sanitizers/libs/sanitizers.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘DT’ ‘gridExtra’
  All declared Imports should be used.
S3 methods shown with full name in documentation object 'santoku-cast':
  ‘santoku_cast_common.default’ ‘santoku_cast_common.double’
  ‘santoku_cast_common.Date’ ‘santoku_cast_common.POSIXct’
  ‘santoku_cast_common.ts’ ‘santoku_cast_common.zoo’
  ‘santoku_cast_common.integer64’ ‘santoku_cast_common.hexmode’
  ‘santoku_cast_common.octmode’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Note: found 4 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘FitARMA’
Specified C++11: please drop specification unless essential
checkRd: (-1) generef.Rd:29: Escaped LaTeX specials: \&
'library' or 'require' call to ‘progress’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘httr’ ‘jsonlite’
  All declared Imports should be used.
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘stringi’
  All declared Imports should be used.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
File ‘saturnin/libs/saturnin.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘crayon’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘network’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘sBIC/libs/sBIC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘sbioPN/libs/sbioPN.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
File ‘sbmSDP/libs/sbmSDP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Updated help pages with examples
    Updated conjugate model sampler
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Packages which this enhances but not available for checking:
  'gurobi', 'Rcplex', 'pogs'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘pvclust’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Note: found 1 marked UTF-8 string
Specified C++11: please drop specification unless essential
checkRd: (-1) x.oreo.Rd:48: Escaped LaTeX specials: \_ \_
Namespace in Imports field not imported from: ‘compiler’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘R6’ ‘cowplot’ ‘ggplot2’ ‘ggridges’ ‘ggstance’ ‘jmvcore’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘rJava’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘crayon’
  All declared Imports should be used.
Found the following significant warnings:
  error.h:33:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/scclust.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘SingleCellSignalR’
Namespaces in Imports field not imported from:
  ‘future’ ‘utils’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘DuoClustering2018’
Specified C++14: please drop specification unless essential
Namespace in Imports field not imported from: ‘cluster’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘devtools’ ‘mathjaxr’
  All declared Imports should be used.
File ‘SCEPtERbinary/libs/SCEPtERbinary.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘SCEPtER/libs/SCEPtER.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Note: found 464 marked UTF-8 strings
Note: found 2 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘markdown’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
GNU make is a SystemRequirements.
Packages suggested but not available for checking:
  'ssvd', 'conos', 'pagoda2'
Unexported object imported by a ':::' call: ‘simplifyEnrichment:::is_GO_id’
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘curl’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘speedglm’
S3 methods shown with full name in documentation object 'plot':
  ‘plot.discretization’

S3 methods shown with full name in documentation object 'predict':
  ‘predict.discretization’ ‘predict.reject_infered’

S3 methods shown with full name in documentation object 'summary':
  ‘summary.discretization’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘pracma’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘RhpcBLASctl’
  All declared Imports should be used.
File ‘scout/libs/scout.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘AUCell’
File ‘scquantum/libs/scquantum.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
checkRd: (-1) simulateSNPs.Rd:46: Escaped LaTeX specials: \& \& \&
checkRd: (-1) simulateSNPs.Rd:80: Escaped LaTeX specials: \& \& \&
Namespaces in Imports field not imported from:
  ‘BiocManager’ ‘crayon’ ‘knitr’ ‘methods’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘untitled_consensus_cluster’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Namespaces in Imports field not imported from:
  ‘methods’ ‘pbapply’ ‘utils’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘glmGamPoi’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Note: found 1 marked UTF-8 string
Note: found 51 marked UTF-8 strings
Note: found 2 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘MC p-value.ps’ ‘Output.csv’ ‘Rh.ps’ ‘Th.ps’ ‘dataratio .Rdata’
  ‘featuresRmax.csv’ ‘featuresT.csv’
Problems with news in ‘NEWS.md’:
No news entries found.
Specified C++11: please drop specification unless essential
Note: found 5 marked Latin-1 strings
  Note: found 51869 marked UTF-8 strings
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘rgdal’ ‘rgeos’ ‘tidyr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Packages suggested but not available for checking:
  'xbioc', 'MuSiC', 'seAMLessData'
Namespace in Imports field not imported from: ‘randomForest’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Note: found 3 marked UTF-8 strings
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘fansi’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Note: found 1 marked UTF-8 string
'LazyData' is specified without a 'data' directory
File ‘segmag/libs/segmag.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages suggested but not available for checking:
  'flowMerge', 'flowClust', 'flowCore'
Packages unavailable to check Rd xrefs: ‘flowClust’, ‘flowMerge’
Package suggested but not available for checking: ‘spgrass6’
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘cluster’ ‘factoextra’ ‘tidyr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘FD’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'min.abs':
  ‘min.abs’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘lavaan’ ‘psych’ ‘semPlot’ ‘semTools’ ‘shinyAce’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rmarkdown’ ‘webp’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘editData’ ‘miniUI’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
checkRd: (-1) escape.Rd:28: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
File ‘semver/libs/semver.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘reticulate’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fahst.rd:39: Escaped LaTeX specials: \^
checkRd: (-1) fahst.rd:36: Escaped LaTeX specials: \^
checkRd: (-1) fasnt.rd:46: Escaped LaTeX specials: \^
checkRd: (-1) fasnt.rd:42: Escaped LaTeX specials: \^
checkRd: (-1) fasnt.rd:43: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:49: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:44: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:45: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:46: Escaped LaTeX specials: \^
checkRd: (-1) hsortplot.rd:24: Escaped LaTeX specials: \^
checkRd: (-1) nappesortplot.Rd:30: Escaped LaTeX specials: \^
checkRd: (-1) nappesortplot.Rd:28: Escaped LaTeX specials: \^
checkRd: (-1) plot.fahst.rd:45: Escaped LaTeX specials: \^
checkRd: (-1) plot.fasnt.Rd:47: Escaped LaTeX specials: \^
checkRd: (-1) plot.fast.Rd:45: Escaped LaTeX specials: \^
checkRd: (-1) print.fahst.rd:22: Escaped LaTeX specials: \^
checkRd: (-1) print.fasnt.Rd:22: Escaped LaTeX specials: \^
checkRd: (-1) print.fast.Rd:22: Escaped LaTeX specials: \^
Specified C++11: please drop specification unless essential
Note: found 836 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Note: found 4436 marked UTF-8 strings
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Note: found 3128 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Note: found 52 marked UTF-8 strings
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘assocpointpair_result.csv’ ‘foundereffectfinder_result.csv’
  ‘getfreqs_result.csv’ ‘getfreqs_result.png’ ‘orPlot.pdf1_1.pdf’
  ‘orPlot.pdf2_1.pdf’ ‘orPlot.pdf3_1.pdf’ ‘orPlot.pdf4_1.pdf’
  ‘orPlot.pdf5_1.pdf’ ‘orPlot.pdf6_1.pdf’ ‘orPlot.pdf7_1.pdf’
  ‘orPlot.pdf8_1.pdf’ ‘q-values_result.csv’ ‘rewritetuple_result.csv’
  ‘tartan_plot.pdf’ ‘vispair_plot.pdf’ ‘vispairfeat_plot.pdf’
  ‘volcano_plot.pdf’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘sequences/libs/sequences.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) SEset_to_network.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) network_to_SEset.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) network_to_path.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) path_to_network.Rd:29: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘plyr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
File ‘sgeostat/libs/sgeostat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) gPLS.Rd:72: Escaped LaTeX specials: \^
checkRd: (-1) gPLS.Rd:74: Escaped LaTeX specials: \^
checkRd: (-1) sPLS.Rd:67: Escaped LaTeX specials: \^
checkRd: (-1) sPLS.Rd:69: Escaped LaTeX specials: \^
checkRd: (-1) sgPLS.Rd:75: Escaped LaTeX specials: \^
checkRd: (-1) sgPLS.Rd:77: Escaped LaTeX specials: \^
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Other ideas
Namespace in Imports field not imported from: ‘stats’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘MASS’ ‘kableExtra’ ‘tidyverse’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘rCOSA’
Namespaces in Imports field not imported from:
  ‘MASS’ ‘huge’
  All declared Imports should be used.
Package unavailable to check Rd xrefs: ‘rCOSA’
Package suggested but not available for checking: ‘hydromad’
Specified C++11: please drop specification unless essential
Note: found 14 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘shiny’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘stats’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cmdstanr’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘shiny’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘reactable’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘markdown’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘httr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘KGode’ ‘XML’ ‘ggplot2’ ‘gridExtra’ ‘mvtnorm’ ‘reshape2’ ‘shinyjs’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘R6’ ‘scales’ ‘websocket’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Note: found 2 marked UTF-8 strings
Namespace in Imports field not imported from: ‘purrr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Namespaces in Imports field not imported from:
  ‘shiny’ ‘shinyjs’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘e1071’ ‘knitr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘.shiny_run’ ‘shinyShortcut.desktop’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cmdstanr’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘R6’ ‘shiny’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  cairodev.h:86:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cairodev.c:11:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  outline.h:64:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  util.h:44:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  util.h:47:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  outline.c:169:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  register_routines.c:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  showtext.c:111:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  util.c:43:19: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  util.c:53:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/showtext.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘MM.csv’ ‘Simul.csv’ ‘catalytic.csv’
Specified C++11: please drop specification unless essential
Note: found 1231 marked UTF-8 strings
Note: found 28 marked UTF-8 strings
Specified C++11: please drop specification unless essential
File ‘signal/libs/signal.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following files/directories:
  ‘ExportFigtree1.tre’
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘ltmle’
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘MASS’ ‘grid’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘pedtools’ ‘readr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘database.csv’ ‘output.csv’ ‘output_clst.csv’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Found the following files/directories:
  ‘res_mutation.tsv’ ‘res_mutationCounts.txt’
  ‘res_processContribution.txt’ ‘res_processes.txt’
Note: found 1 marked UTF-8 string
Namespace in Imports field not imported from: ‘quadprog’
  All declared Imports should be used.
Found the following files/directories:
  ‘simu.pheno’ ‘usedpars.txt’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    simpleCache [0.0.1]
Namespace in Imports field not imported from: ‘DBI’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File ‘simplexreg/libs/simplexreg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘SimRAD-exampleRefSeq-Fasta.fa’ ‘SimRAD-exampleRefSeq.fa’
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘fg_step_tab_pp’
Running ‘test-all.R’ [54s/54s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > if(require(testthat)) {
  + 
  +     test_check("simr")
  + }
  Loading required package: testthat
  Loading required package: simr
  Loading required package: lme4
  Loading required package: Matrix
  
  Attaching package: 'simr'
  
  The following object is masked from 'package:lme4':
  
      getData
  
  The following object is masked from 'package:testthat':
  
      compare
  
  boundary (singular) fit: see help('isSingular')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 113 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_modify.R:12:5'): errors are thrown ───────────────────────────
  `sigma(fglm) <- 8` did not throw an error.
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 113 ]
  Error: Test failures
  Execution halted
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Version (Date)
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘metafor’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘crqa’ ‘plot3D’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘pracma’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘magrittr’ ‘psych’ ‘stringr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘stringi’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘data.table’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘data.table’ ‘dplyr’ ‘rmarkdown’ ‘yaml’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Crashpad’
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘methods’
  All declared Imports should be used.
Note: found 2 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘kmndirs’
Unavailable namespace imported from by a ':::' call: ‘kmndirs’
  See the note in ?`:::` about the use of this operator.
GNU make is a SystemRequirements.
File ‘skm/libs/skm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘maps’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘numDeriv’ ‘png’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘RcppArmadillo’
  All declared Imports should be used.
Note: found 23 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) ex0723.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ex0915.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) ex1515.Rd:4: Escaped LaTeX specials: \&
File ‘SLHD/libs/SLHD.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘checkmate’ ‘glmnet’ ‘mice’
  All declared Imports should be used.
Note: found 2 marked Latin-1 strings
checkRd: (-1) slp-package.Rd:38: Escaped LaTeX specials: \&
File ‘slp/libs/slp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Note: found 15 marked Latin-1 strings
  Note: found 2 marked UTF-8 strings
Package suggested but not available for checking: ‘gurobi’
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘qpdf’
  All declared Imports should be used.
Unknown package ‘InformationValue’ in Rd xrefs
Note: found 1122 marked UTF-8 strings
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘covr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
checkRd: (-1) customerRetentionDemographics.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) customerRetentionDemographics.Rd:11: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:12: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:13: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:15: Escaped LaTeX specials: \$
Namespace in Imports field not imported from: ‘quadprog’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘Rdpack’ ‘rmarkdown’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘compiler’ ‘lmtest’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
checkRd: (-1) hoods2dsmooth.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) kernel2dmeitsjer.Rd:75: Escaped LaTeX specials: \&
checkRd: (-1) kernel2dsmooth.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) smoothie-package.Rd:42: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘nlme’
  All declared Imports should be used.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘lseq’
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘my_new_social_media_plot.png’
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘Rdpack’ ‘ggplot2’
  All declared Imports should be used.
Found the following significant warnings:
  SnowballC_init.c:7:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  stem.c:59:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/SnowballC.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘.R_Test’
Namespaces in Imports field not imported from:
  ‘iterators’ ‘itertools’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘FactoMineR’ ‘flextable’ ‘htmlTable’ ‘stringr’
  All declared Imports should be used.
Note: found 938 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
checkRd: (-1) llwrPTF.Rd:7: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘R6’ ‘lgr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.solveEnv’
Namespace in Imports field not imported from: ‘rlist’
  All declared Imports should be used.
S3 methods shown with full name in documentation object 'plot.predictions':
  ‘plot.predictions’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot.som.Rd:27: Escaped LaTeX specials: \_
checkRd: (-1) som.Rd:128: Escaped LaTeX specials: \_
File ‘som/libs/som.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Note: found 4 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘RSQLite’ ‘dbplyr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘SciencesPo’
'LazyData' is specified without a 'data' directory
File ‘SoundexBR/libs/SoundexBR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package suggested but not available for checking: ‘r2cytoscape’
Namespace in Imports field not imported from: ‘RcppEigen’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘SpaCCr/libs/SpaCCr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Note: found 1 marked UTF-8 string
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘NLMR’
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
File ‘sparcl/libs/sparcl.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘gtable’ ‘rlang’ ‘testthat’
  All declared Imports should be used.
Unknown package ‘sparsebn’ in Rd xrefs
'LazyData' is specified without a 'data' directory
File ‘SparseFactorAnalysis/libs/SparseFactorAnalysis.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Problems with news in ‘NEWS.md’:
No news entries found.
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File ‘sparseLTSEigen/libs/sparseLTSEigen.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘future’ ‘geosphere’ ‘lubridate’ ‘tidyverse’ ‘viridis’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘sparsereg/libs/sparsereg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘SparseTSCGM/libs/SparseTSCGM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘irlba’ ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘RStoolbox’
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
checkRd: (-1) sarorderedprobit.Rd:84: Escaped LaTeX specials: \#
Note: found 283 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Depends: includes the non-default packages:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat.linnet', 'spatstat.data', 'spatstat',
  'rpanel', 'tcltk'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom',
  'spatstat.random', 'spatstat.explore', 'spatstat.model',
  'spatstat.linnet', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom',
  'spatstat.random', 'spatstat.explore', 'spatstat.model', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Packages suggested but not available for checking:
  'RandomFields', 'RandomFieldsUtils'

Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.geom', 'spatstat.random',
  'spatstat.explore', 'nlme', 'rpart'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Package unavailable to check Rd xrefs: ‘RandomFields’
Packages suggested but not available for checking:
  'RandomFields', 'RandomFieldsUtils'
Package unavailable to check Rd xrefs: ‘RandomFields’
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.geom', 'spatstat.random',
  'spatstat.explore', 'spatstat.model', 'spatstat.linnet'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
'LazyData' is specified without a 'data' directory
File ‘spcr/libs/spcr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package suggested but not available for checking: ‘spDataLarge’
Note: found 56 marked UTF-8 strings
Note: found 34 marked UTF-8 strings
Running examples in ‘speaq-Ex.R’ failed
The error most likely occurred in:

> ### Name: BWR
> ### Title: BW ratio calculation
> ### Aliases: BWR
> 
> ### ** Examples
> 
> res=makeSimulatedData();
> X=res$data;
> groupLabel=res$label;
> peakList <- detectSpecPeaks(X,
+                             nDivRange = c(128),
+                             scales = seq(1, 16, 2),
+                             baselineThresh = 50000,
+                             SNR.Th = -1,
+                             verbose=FALSE
+ );
> resFindRef<- findRef(peakList);
> refInd <- resFindRef$refInd;
> maxShift = 50;
> Y <- dohCluster(X,
+                 peakList = peakList,
+                 refInd = refInd,
+                 maxShift  = maxShift,
+                 acceptLostPeak = TRUE, verbose=FALSE);
Warning in min(peakList) :
  no non-missing arguments to min; returning Inf
Warning in max(peakList) :
  no non-missing arguments to max; returning -Inf
Error in startP:(minpeakList - 1) : result would be too long a vector
Calls: dohCluster -> .withMaxShift -> hClustAlign
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘classic_speaq_vignette.Rmd’ using rmarkdown
Quitting from lines 111-120 (classic_speaq_vignette.Rmd) 
Error: processing vignette 'classic_speaq_vignette.Rmd' failed with diagnostics:
result would be too long a vector
--- failed re-building ‘classic_speaq_vignette.Rmd’

--- re-building ‘speaq2_illustrations.Rmd’ using rmarkdown
Quitting from lines 71-83 (speaq2_illustrations.Rmd) 
Error: processing vignette 'speaq2_illustrations.Rmd' failed with diagnostics:
invalid 'times' argument
--- failed re-building ‘speaq2_illustrations.Rmd’

SUMMARY: processing the following files failed:
  ‘classic_speaq_vignette.Rmd’ ‘speaq2_illustrations.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘SPECIES/libs/SPECIES.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Roadmap of specklestar package
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) image.plot.Rd:78: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Note: found 5 marked Latin-1 strings
Namespaces in Imports field not imported from:
  ‘glue’ ‘httptest’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘.neig’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘sf’ ‘spData’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Note: found 189 marked UTF-8 strings
Found the following files/directories:
  ‘AlphaGA_3.txt’ ‘AlphaML_3.txt’ ‘BetaGA_3.txt’ ‘BetaML_3.txt’
  ‘Performance_GA_ML_ 3 .pdf’ ‘SPIGA_3Pmon.Pm_St1.pdf’
  ‘SPIGA_3Pmon.Pm_St2.pdf’ ‘SPI_AG_3.txt’ ‘SPI_ML_3.txt’
  ‘SPI_ML_3Pm_St1.pdf’ ‘SPI_ML_3Pm_St2.pdf’ ‘SPI_ML_3Pm_St3.pdf’
  ‘SPI_ML_3Pm_St4.pdf’ ‘SPI_PARAM_3.txt’ ‘SPI_PARAM_3Pm_St1.pdf’
  ‘SPI_PARAM_3Pm_St2.pdf’ ‘SPI_PARAM_3Pm_St3.pdf’
  ‘SPI_PARAM_3Pm_St4.pdf’
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
checkRd: (-1) PimaIndiansDiabetes_long.Rd:14: Escaped LaTeX specials: \^
checkRd: (-1) PimaIndiansDiabetes_wide.Rd:16: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘ChainLadder’
Error(s) in re-building vignettes:
--- re-building ‘SPLICE-demo.Rmd’ using rmarkdown
Quitting from lines 700-715 (SPLICE-demo.Rmd) 
Error: processing vignette 'SPLICE-demo.Rmd' failed with diagnostics:
there is no package called 'ChainLadder'
--- failed re-building ‘SPLICE-demo.Rmd’

SUMMARY: processing the following file failed:
  ‘SPLICE-demo.Rmd’

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Feature Changes
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  spMC.h:44:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  spMC.c:303:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/spMC.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Parallel computation will not perform. CPU cores in use: 1.

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Namespace in Imports field not imported from: ‘biomod2’
  All declared Imports should be used.
Note: found 1 marked UTF-8 string
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Note: found 7587 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘sampling’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘lwgeom’ ‘rgeoda’
  All declared Imports should be used.
Note: found 4 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘progress’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    updates of 10th May 2021
Namespaces in Imports field not imported from:
  ‘extrafont’ ‘ggplot2’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Note: found 199 marked UTF-8 strings
Specified C++11: please drop specification unless essential
checkRd: (-1) shypEstFun.Rd:52: Escaped LaTeX specials: \$
checkRd: (-1) shypEstFun.Rd:54: Escaped LaTeX specials: \$
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DBI’ ‘RSQLite’ ‘dbplyr’ ‘dplyr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
autoplot:
  function(object, ...)
autoplot.qts_sample:
  function(x, memberships, highlighted, with_animation, ...)

autoplot:
  function(object, ...)
autoplot.qts:
  function(x, highlighted_points, ...)

autoplot:
  function(object, ...)
autoplot.prcomp_qts:
  function(x, what, ...)

autoplot:
  function(object, ...)
autoplot.kma_qts:
  function(x, ...)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘arm’ ‘brms’ ‘lme4’ ‘plotly’ ‘shinyMatrix’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Note: found 35 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘shinyFiles’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘e1071’
  All declared Imports should be used.
estfun:
  function(x, ...)
estfun.ssym:
  function(object, ...)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
checkRd: (-1) Snacks.Rd:6: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
Note: found 123 marked UTF-8 strings
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘MASS’ ‘mice’ ‘sandwich’ ‘zoo’
  All declared Imports should be used.
Note: found 40748 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘reshape2’ ‘stats’
  All declared Imports should be used.
checkRd: (-1) katrina.Rd:36: Escaped LaTeX specials: \&
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘httr’ ‘latex2exp’ ‘rstantools’ ‘tibble’ ‘tidyverse’
  ‘utils’
  All declared Imports should be used.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File ‘starma/libs/starma.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘Matrix’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    To do
Package suggested but not available for checking: ‘starsdata’
Namespaces in Imports field not imported from:
  ‘bookdown’ ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
checkRd: (-1) multiCUMSUM.Rd:33: Escaped LaTeX specials: \&
Note: found 14 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘Hmisc’ ‘corrgram’ ‘datasets’ ‘dplyr’ ‘psych’ ‘psycho’ ‘rpivotTable’
  ‘shiny’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Note: found 1 marked Latin-1 string
  Note: found 18 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘asreml’
Package suggested but not available for checking: ‘asreml’
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘asreml’
Namespace in Imports field not imported from: ‘mapproj’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following possibly unsafe calls:
File ‘statnet.common/R/control.utilities.R’:
  unlockBinding("snctrl", environment(snctrl))
  unlockBinding("snctrl", environment(update_my_snctrl))
Package suggested but not available for checking: ‘networksis’
'LazyData' is specified without a 'data' directory
Note: found 56 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘Rdpack’ ‘mathjaxr’
  All declared Imports should be used.
Note: found 20 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘Hmisc’ ‘corrgram’ ‘datasets’ ‘dplyr’ ‘psych’ ‘psycho’ ‘rpivotTable’
  ‘shiny’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DDoutlier’ ‘car’ ‘corrplot’ ‘data.table’ ‘energy’ ‘ggplot2’
  ‘gridExtra’ ‘kableExtra’ ‘knitr’ ‘readr’ ‘reshape2’ ‘rmarkdown’
  ‘shinydisconnect’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘gbm’ ‘ggfortify’ ‘tibble’ ‘tidyverse’
  All declared Imports should be used.
checkRd: (-1) stdGlm.Rd:93: Escaped LaTeX specials: \&
File ‘steadyICA/libs/steadyICA.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
File ‘StepwiseTest/libs/StepwiseTest.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Note: found 370 marked UTF-8 strings
Note: found 240 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File ‘stlplus/libs/stlplus.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘SnowballC’ ‘tm’
  All declared Imports should be used.
Found the following files/directories:
  ‘corrviz.html’
Namespaces in Imports field not imported from:
  ‘huge’ ‘readr’ ‘scales’ ‘shinyjs’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Namespace in Imports field not imported from: ‘shiny’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Note: found 22806 marked UTF-8 strings
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Note: found 1725 marked UTF-8 strings
Note: found 1 marked UTF-8 string
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘sna’
  All declared Imports should be used.
Found the following files/directories:
  ‘myNewStrat.R’
Package suggested but not available for checking: ‘StrathE2E2examples’
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘bnlearn’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
File ‘strat/libs/strat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘ks’
  All declared Imports should be used.
Malformed Title field: should not end in a period.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘STRaitRazoR’
Namespaces in Imports field not imported from:
  ‘broom’ ‘car’ ‘lmerTest’ ‘pbkrtest’
  All declared Imports should be used.
efpFunctional: multiple local function definitions for ‘plotProcess’
  with different formal arguments
mefp.efp: multiple local function definitions for ‘computeEmpProc’ with
  different formal arguments
checkRd: (-1) SP2001.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) SP2001.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) SP2001.Rd:12: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Note: found 83 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘pls’ ‘tibble’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Note: found 2 marked UTF-8 strings
S3 methods shown with full name in documentation object 'size.penalize':
  ‘size.penalize’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘UpSetR’ ‘alluvial’ ‘gridBase’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘DT’ ‘bsplus’ ‘colourpicker’ ‘grDevices’ ‘graphics’ ‘jsonlite’
  ‘purrr’ ‘shinyjs’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tidyselect’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘cli’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘SummaryLasso/libs/SummaryLasso.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Note: found 78 marked UTF-8 strings
Found the following significant warnings:
  ../inst/include/sundials/sundials_nvector.h:163:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ../inst/include/sundials/sundials_nonlinearsolver.h:131:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ../inst/include/sundials/sundials_matrix.h:106:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ../inst/include/sundials/sundials_linearsolver.h:137:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sundials/sundials/sundials_linearsolver.c:28:17: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sundials/sundials/sundials_matrix.c:29:11: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sundials/sundials/sundials_nonlinearsolver.c:26:20: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sundials/sundials/sundials_nvector.c:28:10: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/sundialr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘data.table’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'extraTrees', 'speedglm'
Unknown packages ‘extraTrees’, ‘speedglm’ in Rd xrefs
Packages suggested but not available for checking: 'extraTrees', 'speedglm'
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘gridExtra’ ‘mvtnorm’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘doParallel’ ‘pROC’
  All declared Imports should be used.
surfaceSimulate : phytransform: no visible global function definition
  for ‘rescale’
Undefined global functions or variables:
  rescale
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘learnr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘survival’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘gpclib’
Unknown package ‘gpclib’ in Rd xrefs
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) estweights.Rd:42: Escaped LaTeX specials: \&
Package suggested but not available for checking: ‘gurobi’
Specified C++11: please drop specification unless essential
Packages suggested but not available for checking:
  'survHEinla', 'survHEhmc'
Namespace in Imports field not imported from: ‘readr’
  All declared Imports should be used.
Package suggested but not available for checking: ‘distr6’
Unknown package ‘distr6’ in Rd xrefs
File ‘survivalROC/libs/survivalROC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘quadprog’
  All declared Imports should be used.
Note: found 70 marked UTF-8 strings
Unknown package ‘survJamda’ in Rd xrefs
Namespace in Imports field not imported from: ‘base’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) diabetes.Rd:18: Escaped LaTeX specials: \^
Note: found 12 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘swephRdata’
Found the following significant warnings:
  libswe/swephlib.h:120:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  libswe/swephlib.h:130:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  libswe/swepcalc.h:120:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  libswe/swepcalc.c:373:7: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  libswe/sweph.c:7099:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  libswe/swephlib.c:3033:7: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/swephR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘mapdata’ ‘utils’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Additional functions and data sets
    Amendments to functions
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    pre-release switchboard (2020 - 2021)
'LazyData' is specified without a 'data' directory
Error loading dataset 'cbm_spatial':
   Error in .requirePackage(package) : unable to find required package 'sp'
  
  Error loading dataset 'elk_spatial':
   Error in .requirePackage(package) : unable to find required package 'sp'
  
  The dataset(s) may use package(s) not declared in Depends/Imports.
Packages suggested but not available for checking: 'sylly.de', 'sylly.es'
Namespaces in Imports field not imported from:
  ‘htmltools’ ‘markdown’ ‘nextGenShinyApps’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
possible bashism in configure line 12 (echo -n):
  echo -n "  checking for Sun Studio compiler..."
  possible bashism in configure line 22 (echo -n):
  echo -n "  checking for OS..."
File ‘SynchWave/libs/SynchWave.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘StackImpute’ ‘arm’ ‘boot’ ‘broom’ ‘knitr’ ‘mvtnorm’
  ‘randomForest’
  All declared Imports should be used.
Suggests orphaned package: ‘udunits2’
Namespace in Imports field not imported from: ‘metR’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘ChainLadder’
Error(s) in re-building vignettes:
--- re-building ‘SynthETIC-demo.Rmd’ using rmarkdown
Quitting from lines 992-1007 (SynthETIC-demo.Rmd) 
Error: processing vignette 'SynthETIC-demo.Rmd' failed with diagnostics:
there is no package called 'ChainLadder'
--- failed re-building ‘SynthETIC-demo.Rmd’

SUMMARY: processing the following file failed:
  ‘SynthETIC-demo.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘test.csv’
'LazyData' is specified without a 'data' directory
Note: found 38 marked UTF-8 strings
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘.xls’ ‘attenu.xls’ ‘chick1.xls’ ‘chick2.xls’ ‘generic1.xls’
  ‘hands.xls’ ‘table1.xls’
Note: found 551 marked UTF-8 strings
checkRd: (-1) tmCtypes.Rd:22: Escaped LaTeX specials: \#
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Note: found 81 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘stringr’ ‘tibble’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
File ‘tagcloud/libs/tagcloud.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘readr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘MASS’ ‘devEMF’ ‘segmented’ ‘smoother’ ‘tools’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'designMatrices':
  ‘print.designMatrices’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘jiebaR’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
checkRd: (-1) tapnet-package.Rd:40: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Note: found 301 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘SnowballC’ ‘dplyr’ ‘igraph’ ‘tm’ ‘wordcloud2’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘tashudata’
Namespaces in Imports field not imported from:
  ‘drat’ ‘plyr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Note: found 137 marked UTF-8 strings
Note: found 30 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘quadprog’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘gridExtra’ ‘reshape2’ ‘truncnorm’ ‘xtable’
  All declared Imports should be used.
Error(s) in re-building vignettes:
--- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown
Quitting from lines 159-160 (tciu-LT-kimesurface.Rmd) 
Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics:
could not find function "discrete_range"
--- failed re-building ‘tciu-LT-kimesurface.Rmd’

--- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown
--- finished re-building ‘tciu-fMRI-analytics.Rmd’

SUMMARY: processing the following file failed:
  ‘tciu-LT-kimesurface.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespaces in Imports field not imported from:
  ‘colorspace’ ‘psych’
  All declared Imports should be used.
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘scales’
  All declared Imports should be used.
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘R2wd’
checkRd: (-1) R2txt.Rd:164: Escaped LaTeX specials: \#
checkRd: (-1) bct.Rd:18: Escaped LaTeX specials: \^
checkRd: (-1) bct.Rd:19: Escaped LaTeX specials: \^
checkRd: (-1) ineq.Rd:10: Escaped LaTeX specials: \&
checkRd: (-1) put.points.demo.Rd:39: Escaped LaTeX specials: \^
checkRd: (-1) run.cor.examp.Rd:10: Escaped LaTeX specials: \^
checkRd: (-1) run.cor.examp.Rd:31: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘httr’ ‘jsonlite’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘par-7269706c6579’
Package suggested but not available for checking: ‘gurobi’
File ‘testforDEP/libs/testforDEP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Packages which this enhances but not available for checking:
  'btergm', 'mnlogit', 'speedglm', 'Zelig'
Unknown packages ‘btergm’, ‘speedglm’ in Rd xrefs
Note: found 3 marked UTF-8 strings
Note: found 37 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Note: found 10051 marked UTF-8 strings
  Note: found 10523 strings marked as "bytes"
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘doParallel’ ‘forecast’ ‘parallel’ ‘tidyr’
  All declared Imports should be used.
Note: found 40 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Note: found 3 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Note: found 4 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Unknown package ‘textreadr’ in Rd xrefs
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘ggm’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘MASS’ ‘base’ ‘graphics’ ‘janitor’ ‘rlang’ ‘utils’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Note: found 197527 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘MASS’ ‘readr’ ‘tidyverse’ ‘usethis’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) CPdimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) CPdimensionalityplot.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) T2func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T2funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3dimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:26: Escaped LaTeX specials: \& \& \&
checkRd: (-1) TV.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) pcamean.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) threewayanova.Rd:24: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘knitr’
  All declared Imports should be used.
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘badger’ ‘ggplot2’ ‘lubridate’ ‘scales’ ‘xgboost’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘tidyr’
  All declared Imports should be used.
Note: found 2 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘autostats’ ‘badger’ ‘framecleaner’ ‘presenter’ ‘tidybins’ ‘validata’
  All declared Imports should be used.
Note: found 40 marked UTF-8 strings
Note: found 4546 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘grDevices’ ‘graphics’ ‘utils’
  All declared Imports should be used.
Note: found 6 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Initial Release (v0.1.0)
'LazyData' is specified without a 'data' directory
Note: found 182 marked UTF-8 strings
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Minor changes:
Namespace in Imports field not imported from: ‘mix’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘modeldata’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tidyverse’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘reticulate’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Note: found 24 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Note: found 113 marked UTF-8 strings
Running ‘testthat.R’ [22s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(tidystats)
  Welcome to tidystats 0.5.1.
  This is a small bug fix update.
  > 
  > test_check("tidystats")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_anova_glm.R:31:3'): anova.glm works ──────────────────────────
  `tidy_model` not equal to `tidy_model_test`.
  Component "terms": Component 2: Component 2: Length mismatch: comparison on first 3 components
  Component "terms": Component 3: Component 2: Length mismatch: comparison on first 3 components
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ]
  Error: Test failures
  Execution halted
Note: found 34206 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Note: found 4581 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  common.c:36:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/tiff.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Note: found 341 marked UTF-8 strings
Namespace in Imports field not imported from: ‘lwgeom’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘rgdal’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘base’
  All declared Imports should be used.
checkRd: (-1) compare.Rd:46: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘lubridate’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Note: found 2750 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Note: found 2 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘cpp11’ ‘dplyr’ ‘magrittr’ ‘stringi’
  All declared Imports should be used.
Note: found 384749 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Note: found 1 marked UTF-8 string
GNU make is a SystemRequirements.
Namespace in Imports field not imported from: ‘snow’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found an obsolete/platform-specific call in the following function:
  ‘.my.tkdev’
Found the platform-specific device:
  ‘X11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Note: found 134043 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Note: found 1 marked UTF-8 string
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'Rcampdf', 'tm.lexicon.GeneralInquirer'
'LazyData' is specified without a 'data' directory
File ‘tmvnsim/libs/tmvnsim.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘tmvtnorm/libs/tmvtnorm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Note: found 1 marked UTF-8 string
Namespace in Imports field not imported from: ‘memoise’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Note: found 1 marked UTF-8 string
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Note: found 160 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘cowplot’ ‘ggplot2’ ‘jsonlite’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘corpus.JSS.papers’
Packages suggested but not available for checking:
  'RGtk2', 'gWidgets2RGtk2'
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘toscaData’
Namespace in Imports field not imported from: ‘hdi’
  All declared Imports should be used.
Note: found 100 marked Latin-1 strings
  Note: found 548 marked UTF-8 strings
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
Note: found 153 marked Latin-1 strings
  Note: found 108 marked UTF-8 strings
Namespace in Imports field not imported from: ‘Matrix’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘V8’ ‘colorspace’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Enhancements
    Other changes
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘jpeg’ ‘pastecs’ ‘plyr’ ‘raster’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘taxidata’
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  Warning: replacing previous import ‘GPArotation::equamax’ by ‘psych::equamax’ when loading ‘traj’
  Warning: replacing previous import ‘GPArotation::varimin’ by ‘psych::varimin’ when loading ‘traj’
See ‘/data/gannet/ripley/R/packages/tests-devel/traj.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Note: found 827 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘MASS’ ‘Matrix’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘memoise’
  All declared Imports should be used.
checkRd: (-1) dcc.Rd:227: Escaped LaTeX specials: \&
checkRd: (-1) seascorr.Rd:128: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘tree’
  All declared Imports should be used.
Package suggested but not available for checking: ‘TreeDistData’
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Bug fixes
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘crul’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [8s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trendeval)
  > 
  > test_check("trendeval")
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-evaluate_aic.R:6:5'): evaluate_aic ─────────────────────────────
  Error in `model$fit(data)`: attempt to apply non-function
  Backtrace:
      ▆
   1. └─trendeval::evaluate_aic(model_lm, dat) at test-evaluate_aic.R:6:4
  ── Error ('test-evaluate_models.R:13:3'): evaluate_models returns with expected structure ──
  <vctrs_error_subscript_oob/vctrs_error_subscript/rlang_error/error/condition>
  Error in `tidyr::pivot_wider(result, names_from = "metric", values_from = "score")`: Can't subset columns that don't exist.
  ✖ Column `metric` doesn't exist.
  Backtrace:
       ▆
    1. ├─trendeval::evaluate_models(...) at test-evaluate_models.R:13:2
    2. │ ├─tidyr::pivot_wider(result, names_from = "metric", values_from = "score")
    3. │ └─tidyr:::pivot_wider.data.frame(result, names_from = "metric", values_from = "score")
    4. │   └─tidyr::build_wider_spec(...)
    5. │     └─tidyselect::eval_select(...)
    6. │       └─tidyselect:::eval_select_impl(...)
    7. │         ├─tidyselect:::with_subscript_errors(...)
    8. │         │ └─rlang::try_fetch(...)
    9. │         │   └─base::withCallingHandlers(...)
   10. │         └─tidyselect:::vars_select_eval(...)
   11. │           └─tidyselect:::as_indices_sel_impl(...)
   12. │             └─tidyselect:::as_indices_impl(...)
   13. │               └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg)
   14. │                 └─vctrs::vec_as_location(...)
   15. └─vctrs (local) `<fn>`()
   16.   └─vctrs:::stop_subscript_oob(...)
   17.     └─vctrs:::stop_subscript(...)
   18.       └─rlang::abort(...)
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
Problems with news in ‘NEWS.md’:
No news entries found.
GNU make is a SystemRequirements.
File ‘TrialSize/libs/TrialSize.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
Note: found 1 marked UTF-8 string
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Changes
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘log2console’
Namespace in Imports field not imported from: ‘tseries’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘reticulate’ ‘tensorflow’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) disaggregate.Rd:56: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘stats’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘stats’
  All declared Imports should be used.
File ‘tseriesChaos/libs/tseriesChaos.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
File ‘tseriesTARMA/libs/tseriesTARMA.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘stats’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'tsibble-vctrs':
  ‘vec_ptype2.tbl_ts’ ‘vec_cast.tbl_ts’ ‘vec_cast.yearmonth’
  ‘vec_ptype2.yearmonth’ ‘vec_cast.yearquarter’
  ‘vec_ptype2.yearquarter’ ‘vec_cast.yearweek’ ‘vec_ptype2.yearweek’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘R6’ ‘crosstalk’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File ‘tspmeta/libs/tspmeta.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘EMD’ ‘vars’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Updates for the development version (0.1.0.9000) on Github
Namespace in Imports field not imported from: ‘forecastHybrid’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘latticeExtra’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'plot-Wave':
  ‘plot.Wave.channel’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
checkRd: (-1) lindner.Rd:44: Escaped LaTeX specials: \_
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Note: found 34 marked Latin-1 strings
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Note: found 9 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package which this enhances but not available for checking: ‘sl3’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘lifecycle’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Found the following significant warnings:
  interface.c:114:14: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/ucminf.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
* used Fortran compiler: ‘GNU Fortran (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
File ‘ucminf/libs/ucminf.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Note: found 2 marked UTF-8 strings
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    uktrans_get is fixed when start_date is used (#2)
    Extra layer of of NULL returns to fail gracefully with an informative message.
    Removed travis & appveyor and using gh_actions instead.
    Using gh-pages to create the pkgdown website.
    Create an app as vignette page to search with the help of uklr.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘MortalityLaws’
Unknown package ‘MortalityLaws’ in Rd xrefs
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Note: found 548 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘extraDistr’ ‘logitnorm’ ‘nakagami’ ‘tibble’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Note: found 3347 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Note: found 7872 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘xml2’
  All declared Imports should be used.
Note: found 488 marked UTF-8 strings
Package suggested but not available for checking: ‘USA.state.boundaries.data’
'LazyData' is specified without a 'data' directory
Note: found 2 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘tidyverse’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tsibble’
  All declared Imports should be used.
checkRd: (-1) aosat.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) aosat.Rd:21: Escaped LaTeX specials: \_
checkRd: (-1) arctic.oscillations.Rd:19: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) arctic.oscillations.Rd:20: Escaped LaTeX specials: \_
checkRd: (-1) babies.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) babies.Rd:41: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:43: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) exec.pay.Rd:5: Escaped LaTeX specials: \$
checkRd: (-1) sp500.excess.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) sp500.excess.Rd:6: Escaped LaTeX specials: \&
Note: found 1 marked UTF-8 string
Note: found 33 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘RCurl’ ‘stringdist’ ‘utils’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  'parallel' 'xml2'
  All declared Imports should be used.
Found the following significant warnings:
  rand.c:90:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rand.c:92:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rand.c:103:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rand.c:138:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/uuid.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Namespace in Imports field not imported from: ‘rio’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'vaers', 'vaersND'
Packages suggested but not available for checking: 'vaers', 'vaersND'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘Cairo’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘PredValidationPlots.pdf’ ‘RepStructValidationPlots.pdf’
Namespaces in Imports field not imported from:
  ‘BBmisc’ ‘badger’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File ‘valorate/libs/valorate.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
File ‘varband/libs/varband.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
checkRd: (-1) randomVarImpsRFplot.Rd:97: Escaped LaTeX specials: \&
checkRd: (-1) varSelImpSpecRF.Rd:83: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘rio’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘mathjaxr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘vdg/libs/vdg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  computeCox.c:15:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/vdra.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Namespace in Imports field not imported from: ‘pander’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘foreach’ ‘iterators’ ‘maps’ ‘spam’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘RCurl’
  All declared Imports should be used.
S3 methods shown with full name in documentation object 'syntab':
  ‘print.syntab’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Note: found 128 marked UTF-8 strings
Note: found 49 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) value.Rd:32: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘nlme’
  All declared Imports should be used.
checkRd: (-1) ex121.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex124.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex125.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex127.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex32.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex33.Rd:18: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) checkTS.VGAMextra.Rd:176: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Note: found 2 marked UTF-8 strings
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘kableExtra’ ‘knitr’ ‘leaflet’ ‘mapview’
  All declared Imports should be used.
Note: found 60 marked UTF-8 strings
Note: found 468 marked UTF-8 strings
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
File ‘VIFCP/libs/VIFCP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘R6’ ‘readr’ ‘uuid’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘mclust’ ‘rlang’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘magrittr’
  All declared Imports should be used.
Note: found 2754 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    NEW FEATURES
File ‘vines/libs/vines.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘stats’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘reshape2’
  All declared Imports should be used.
Specified C++14: please drop specification unless essential
Namespace in Imports field not imported from: ‘sqldf’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘rpart’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘vita/libs/vita.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Note: found 52 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Note: found 4954 marked UTF-8 strings
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    vortexRdata pre-1.0.3
Namespace in Imports field not imported from: ‘glue’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) compute.means.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) norm.wattfabricius.Rd:5: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘usethis’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘flexsurv’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘EnvStats’ ‘shiny’ ‘stats’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘R6’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘R6’ ‘WRS2’ ‘ggplot2’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘flextable’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘nlme’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘rgdal’ ‘vctrs’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘wavelets/libs/wavelets.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘ReconstructedData.txt’ ‘ReconstructedDataStDev.txt’
  ‘ResampledReconstructions.txt’
  ‘ResampledReconstructionsStandardVariation.txt’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Note: found 1 marked UTF-8 string
Note: found 3133 marked UTF-8 strings
Note: found 4413 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Note: found 1668 marked UTF-8 strings
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘httr’ ‘jsonlite’
  All declared Imports should be used.
Package suggested but not available for checking: ‘prepr’
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'iptools', 'rgeolocate'
File ‘webreadr/libs/webreadr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘shiny’ ‘tidyselect’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘Matrix’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Note: found 14 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘here’ ‘rgeos’ ‘tibble’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
File ‘weightedCL/libs/weightedCL.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following significant warnings:
  init.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/WeightedCluster.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
* used C++ compiler: ‘g++ (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Specified C++11: please drop specification unless essential
File ‘weightedScores/libs/weightedScores.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package suggested but not available for checking: ‘ATE’
Missing or unexported object: ‘MNP::predict.mnp’
Unknown package ‘ATE’ in Rd xrefs
Missing link or links in documentation object 'sbps.Rd':
  ‘[cobalt:balance.summary]{col_w_smd()}’
  ‘[cobalt:balance.summary]{col_w_corr()}’

Missing link or links in documentation object 'stop.method.Rd':
  ‘[cobalt:balance.summary]{col_w_smd()}’
  ‘[cobalt:balance.summary]{col_w_ks()}’
  ‘[cobalt:balance.summary]{col_w_cov()}’
  ‘[cobalt:balance.summary]{balance summary}’

See section 'Cross-references' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'QIC.gee':
  ‘QIC.gee’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Major changes
    Minor changes
Note: found 4102 marked UTF-8 strings
Package suggested but not available for checking: ‘anomalize’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘ggthemes’ ‘plotly’ ‘shinythemes’
  All declared Imports should be used.
Note: found 1 marked UTF-8 string
Note: found 1 marked UTF-8 string
File ‘wingui/libs/wingui.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘DescTools’ ‘HydeNet’ ‘RBGL’ ‘Rgraphviz’ ‘arules’ ‘bnlearn’
  ‘dplyr’ ‘graph’ ‘igraph’ ‘linkcomm’ ‘missRanger’ ‘parallel’ ‘psych’
  ‘rhandsontable’ ‘rintrojs’ ‘shinyBS’ ‘shinyWidgets’ ‘shinyalert’
  ‘shinycssloaders’ ‘shinydashboard’ ‘tools’ ‘visNetwork’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Note: found 3984 marked UTF-8 strings
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  random_wrap.c:9:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/wnominate.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
* used Fortran compiler: ‘GNU Fortran (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Problems with news in ‘NEWS.md’:
No news entries found.
Specified C++11: please drop specification unless essential
Note: found 933 marked UTF-8 strings
Note: found 2 marked UTF-8 strings
Note: found 3 marked UTF-8 strings
Note: found 2 marked UTF-8 strings
Found the following files/directories:
  ‘aphiainfo.csv’ ‘tax.csv’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘sna’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Malformed Description field: should contain one or more complete sentences.
Malformed Description field: should contain one or more complete sentences.
Namespaces in Imports field not imported from:
  ‘fdadensity’ ‘locfit’ ‘locpol’ ‘modeest’
  All declared Imports should be used.
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘future’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘magrittr’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘simts’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘RP2_data_1.txt’ ‘RP2_data_4.txt’ ‘RP2_qtl_1.txt’ ‘RP2_qtl_4.txt’
  ‘hp1_effect_qtl.txt’ ‘hp1_freq_mrk.txt’ ‘hp1_freq_qtl.txt’
  ‘hp1_genome.txt’ ‘hp1_last_hp_data.txt’ ‘hp1_lm_mrk.txt’
  ‘hp1_lm_qtl.txt’ ‘hp1_lm_qtl_mrk.txt’ ‘hp1_mrk.txt’ ‘hp1_qtl.txt’
  ‘hp2_effect_qtl.txt’ ‘hp2_freq_mrk.txt’ ‘hp2_freq_qtl.txt’
  ‘hp2_genome.txt’ ‘hp2_last_hp_data.txt’ ‘hp2_lm_mrk.txt’
  ‘hp2_lm_qtl.txt’ ‘hp2_lm_qtl_mrk.txt’ ‘hp2_mrk.txt’ ‘hp2_qtl.txt’
  ‘my_RP_data_1.txt’ ‘my_RP_data_4.txt’ ‘my_RP_mrk_1.txt’
  ‘my_RP_mrk_4.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘xgb.txt’
GNU make is a SystemRequirements.
Namespace in Imports field not imported from: ‘psychTools’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:24:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:25:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:71:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:72:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/xml2.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
* used C++ compiler: ‘g++ (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
'LazyData' is specified without a 'data' directory
Note: found 3 marked UTF-8 strings
Namespaces in Imports field not imported from:
  ‘qpdf’ ‘rlang’ ‘tibble’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
File ‘XNomial/libs/XNomial.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘RCurl’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
checkRd: (-1) read.npc.vpc.results.Rd:16: Escaped LaTeX specials: \_
checkRd: (-1) read.npc.vpc.results.Rd:19: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_
checkRd: (-1) read.npc.vpc.results.Rd:22: Escaped LaTeX specials: \_
Running ‘testthat.R’ [51s/51s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(xpose)
  Loading required package: ggplot2
  
  Attaching package: 'xpose'
  
  The following object is masked from 'package:stats':
  
      filter
  
  > 
  > test_check("xpose")
  [ FAIL 1 | WARN 0 | SKIP 7 | PASS 520 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (7)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-xpose_save.R:27:3'): errors are returned for bad filename input ──
  `xpose_save(plot = plot, file = paths_1[3])` threw an error with unexpected message.
  Expected match: "Unknown graphics device"
  Actual message: "`filename` has no file extension and `device` is \"NULL\"."
  Backtrace:
       ▆
    1. ├─testthat::expect_error(...) at test-xpose_save.R:27:2
    2. │ └─testthat:::quasi_capture(...)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. └─xpose::xpose_save(plot = plot, file = paths_1[3])
    7.   └─ggplot2::ggsave(...)
    8.     └─ggplot2:::plot_dev(device, filename, dpi = dpi)
    9.       └─cli::cli_abort(...)
   10.         └─rlang::abort(...)
  
  [ FAIL 1 | WARN 0 | SKIP 7 | PASS 520 ]
  Error: Test failures
  Execution halted
Namespace in Imports field not imported from: ‘tcltk2’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Note: found 268 marked UTF-8 strings
Found the following files/directories:
  ‘xtable.html’ ‘xtable.tex’
Found the following files/directories:
  ‘OPT.csv’ ‘testTecan_defaultLiquid.csv’ ‘testTecan_setLiquid.csv’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘lubridate’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
GNU make is a SystemRequirements.
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
GNU make is a SystemRequirements.
Namespace in Imports field not imported from: ‘spelling’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'RNRCS', 'metScanR'
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘XML’ ‘atom4R’
  All declared Imports should be used.
Malformed Description field: should contain one or more complete sentences.
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tidyverse’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Note: found 47 marked UTF-8 strings
Note: found 5 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Note: found 146804 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘zdat’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    NEW DEPENDENCIES
checkRd: (-1) ZIClass.Rd:87: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:72: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:74: Escaped LaTeX specials: \_
checkRd: (-1) zid.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:63: Escaped LaTeX specials: \_
Package suggested but not available for checking: ‘SDMTools’
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘ggplot2’ ‘lubridate’
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is 11.7Mb
  sub-directories of 1Mb or more:
    htmlwidgets  11.6Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 13.9Mb
  sub-directories of 1Mb or more:
    R  13.9Mb
Problems with news in 'NEWS.md':
No news entries found.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb
checkRd: (-1) ada.Rd:171: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    data   2.9Mb
    libs   1.2Mb
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    data   9.3Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc   4.7Mb
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc   3.7Mb
Specified C++11: please drop specification unless essential
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc    3.3Mb
    libs   1.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    tutorials   5.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Error(s) in re-building vignettes:
--- re-building 'afex_analysing_accuracy_data.Rmd' using rmarkdown
Quitting from lines 326-331 (afex_analysing_accuracy_data.Rmd) 
Error: processing vignette 'afex_analysing_accuracy_data.Rmd' failed with diagnostics:
Problem while computing position.
ℹ Error occurred in the 1st layer.
Caused by error in `ggplot2::remove_missing()`:
! `na.rm` must be `TRUE` or `FALSE`, not an empty logical vector.
--- failed re-building 'afex_analysing_accuracy_data.Rmd'

--- re-building 'afex_anova_example.Rmd' using rmarkdown
--- finished re-building 'afex_anova_example.Rmd'

--- re-building 'afex_mixed_example.Rmd' using rmarkdown
--- finished re-building 'afex_mixed_example.Rmd'

--- re-building 'afex_plot_introduction.Rmd' using rmarkdown
--- finished re-building 'afex_plot_introduction.Rmd'

--- re-building 'afex_plot_supported_models.Rmd' using rmarkdown
--- finished re-building 'afex_plot_supported_models.Rmd'

--- re-building 'assumptions_of_ANOVAs.Rmd' using rmarkdown
--- finished re-building 'assumptions_of_ANOVAs.Rmd'

--- re-building 'introduction-mixed-models.pdf.asis' using asis
--- finished re-building 'introduction-mixed-models.pdf.asis'

SUMMARY: processing the following file failed:
  'afex_analysing_accuracy_data.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Problems with news in 'NEWS.md':
No news entries found.
S3 methods shown with full name in documentation object 'intervals.freq':
  'intervals.freq'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Package which this enhances but not available for checking: 'asreml'
'LazyData' is specified without a 'data' directory
checkRd: (-1) BerryMielke.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) BlairLacy.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) Kvalseth.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) consensus.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) dsquared.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) l.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) lsquared.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) lsquared.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) var.variance.Rd:12: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    ShinyGR   4.3Mb
    doc       2.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) ALF.Rd:47: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) optimalfrequency.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:31: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) UN1.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) rateprof.Rd:64: Escaped LaTeX specials: \&
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'metaboliteIDmapping'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'library' or 'require' call to 'network' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
as.url:
  function(x, ...)
as.url.domain:
  function(x)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
checkRd: (-1) deshrink.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) deshrink.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) plot.mat.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) plot.wa.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) predict.prcurve.Rd:5: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) AncestryMapper2.0-package.Rd:33: Escaped LaTeX specials: \~
checkRd: (-1) AncestryMapper2.0-package.Rd:38: Escaped LaTeX specials: \~
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) PV_post_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_post_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
Specified C++14: please drop specification unless essential
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   4.1Mb
    libs   1.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 35.3Mb
  sub-directories of 1Mb or more:
    R  35.3Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/approxOT.Rcheck/00install.out' for details.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    extdata   5.4Mb
Problems with news in 'NEWS.md':
No news entries found.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   3.7Mb
checkRd: (-1) AQuadtree-package.Rd:11: Escaped LaTeX specials: \$
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc   5.8Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    R      2.3Mb
    help   1.1Mb
Packages suggested but not available for checking:
  'sfit', 'expectile', 'HaarSeg', 'mpcbs'
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is 37.9Mb
  sub-directories of 1Mb or more:
    R      4.2Mb
    libs  33.1Mb
Package which this enhances but not available for checking: 'ARTP'
Specified C++11: please drop specification unless essential
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    libs      1.0Mb
installed size is 14.3Mb
  sub-directories of 1Mb or more:
    bin   11.3Mb
    misc   2.1Mb
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    include   6.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'asreml'
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'asteRiskData'
Specified C++11: please drop specification unless essential
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc    2.6Mb
    libs   1.1Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Running examples in 'autoReg-Ex.R' failed
The error most likely occurred in:

> ### Name: ggcmprsk
> ### Title: Draw Cumulative Incidence Curves for Competing Risks
> ### Aliases: ggcmprsk
> 
> ### ** Examples
> 
> data(melanoma,package="boot")
> melanoma$status1 = ifelse(melanoma$status==1,1,ifelse(melanoma$status==2,0,2))
> ggcmprsk(time/365+status1~1,data=melanoma)
Error in `mold_formula_default_process_outcomes()`:
! Interaction terms can't be specified on the LHS of `formula`.
ℹ The following interaction term was found: `time/365`.
Backtrace:
     ▆
  1. └─autoReg::ggcmprsk(time/365 + status1 ~ 1, data = melanoma)
  2.   ├─base::suppressWarnings(...)
  3.   │ └─base::withCallingHandlers(...)
  4.   ├─tidycmprsk::cuminc(as.formula(formula), data = data, ...)
  5.   └─tidycmprsk:::cuminc.formula(...)
  6.     ├─hardhat::mold(formula, data, blueprint = hardhat::default_formula_blueprint(intercept = TRUE))
  7.     └─hardhat:::mold.formula(formula, data, blueprint = hardhat::default_formula_blueprint(intercept = TRUE))
  8.       ├─hardhat::run_mold(blueprint, data = data)
  9.       └─hardhat:::run_mold.default_formula_blueprint(blueprint, data = data)
 10.         └─hardhat:::mold_formula_default_process(...)
 11.           └─hardhat:::mold_formula_default_process_outcomes(blueprint = blueprint, data = data)
 12.             └─hardhat:::check_no_interactions(formula)
 13.               └─hardhat:::expr_check_no_interactions(expr, error_call = error_call)
 14.                 └─hardhat:::expr_check_no_interactions(expr[[i]], error_call = error_call)
 15.                   └─hardhat:::expr_check_no_interactions(expr[[i]], error_call = error_call)
 16.                     └─cli::cli_abort(message, call = error_call)
 17.                       └─rlang::abort(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Automatic_Regression_Modeling.Rmd' using rmarkdown
--- finished re-building 'Automatic_Regression_Modeling.Rmd'

--- re-building 'Bootstrap_Prediction.Rmd' using rmarkdown
--- finished re-building 'Bootstrap_Prediction.Rmd'

--- re-building 'Getting_started.Rmd' using rmarkdown
--- finished re-building 'Getting_started.Rmd'

--- re-building 'Statiastical_test_in_gaze.Rmd' using rmarkdown
--- finished re-building 'Statiastical_test_in_gaze.Rmd'

--- re-building 'Survival.Rmd' using rmarkdown
Quitting from lines 195-196 (Survival.Rmd) 
Error: processing vignette 'Survival.Rmd' failed with diagnostics:
Interaction terms can't be specified on the LHS of `formula`.
ℹ The following interaction term was found: `time/365`.
--- failed re-building 'Survival.Rmd'

SUMMARY: processing the following file failed:
  'Survival.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 29.3Mb
  sub-directories of 1Mb or more:
    libs  28.5Mb
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    java   7.7Mb
'LazyData' is specified without a 'data' directory
Running examples in 'AWR.Kinesis-Ex.R' failed
The error occurred in:


R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "AWR.Kinesis"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> options(pager = "console")
> library('AWR.Kinesis')
> 
> base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
> base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv')
> cleanEx()
Error: connections left open:
	stdin (file)
Execution halted
'LazyData' is specified without a 'data' directory
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Package required but not available: 'MixAll'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'lixoftConnectors'
Specified C++14: please drop specification unless essential
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data   5.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    R      2.5Mb
    data   1.3Mb
    doc    1.8Mb
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'fdpbandsdata'
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   4.9Mb
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
checkRd: (-1) barcode.Rd:52: Escaped LaTeX specials: \&
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installed size is  9.4Mb
  sub-directories of 1Mb or more:
    java   9.3Mb
Specified C++11: please drop specification unless essential
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   3.1Mb
    libs   1.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Earlier versions
Specified C++11: please drop specification unless essential
Packages which this enhances but not available for checking:
  'doMC', 'rPython'
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    libs   4.6Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) BayesComm-package.Rd:33: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:
--- re-building 'bayesCT.Rmd' using rmarkdown
--- finished re-building 'bayesCT.Rmd'

--- re-building 'binomial.Rmd' using rmarkdown
--- finished re-building 'binomial.Rmd'

--- re-building 'normal.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'normal.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'normal.Rmd'

--- re-building 'time-to-event.Rmd' using rmarkdown
--- finished re-building 'time-to-event.Rmd'

SUMMARY: processing the following file failed:
  'normal.Rmd'

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) dilution.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:17: Escaped LaTeX specials: \$
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs   4.6Mb
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'doMC'
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    libs   4.7Mb
GNU make is a SystemRequirements.
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   4.7Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    doc    2.8Mb
    libs   2.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
plot:
  function(x)
plot.posterior:
  function(x, add_prior, ...)

plot:
  function(x)
plot.posterior:
  function(x, add_prior, ...)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    R     1.9Mb
    doc   3.9Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) pulse_of_the_nation.Rd:10: Escaped LaTeX specials: \$
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    libs   5.1Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
checkRd: (-1) bart.Rd:271: Escaped LaTeX specials: \_
installed size is 12.7Mb
  sub-directories of 1Mb or more:
    libs  12.7Mb
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
checkRd: (-1) create_ThetaMatrix.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) create_ThetaMatrix.Rd:41: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    doc       1.2Mb
    extdata   3.3Mb
    libs      1.4Mb
Package suggested but not available for checking: 'INLA'
checkRd: (-1) tlsce.Rd:51: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:55: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:90: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:93: Escaped LaTeX specials: \_
S3 methods shown with full name in documentation object 'export.bce':
  'export.bce'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) Glendalough.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Sluggan.Rd:19: Escaped LaTeX specials: \&
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Package suggested but not available for checking: 'BRugs'
'LazyData' is specified without a 'data' directory
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Found the following significant warnings:
  npr.c:183:27: warning: array subscript 50 is outside array bounds of 'double[50]' [-Warray-bounds]
  npr.c:184:29: warning: array subscript 50 is outside array bounds of 'double[50]' [-Warray-bounds]
See 'd:/Rcompile/CRANpkg/local/4.3/bda.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
* used Fortran compiler: 'GNU Fortran (GCC) 12.2.0'
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc       3.6Mb
    extdata   1.2Mb
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fs/libs/x64/fs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: suppressMessages ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    libs   5.6Mb
GNU make is a SystemRequirements.
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    java   7.7Mb
'LazyData' is specified without a 'data' directory
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    data   4.1Mb
    libs   2.8Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc    3.7Mb
    help   1.1Mb
    libs   1.6Mb
'LazyData' is specified without a 'data' directory
checkRd: (-1) bgmm-package.Rd:23: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc    2.9Mb
    libs   1.3Mb
GNU make is a SystemRequirements.
checkRd: (-1) dotPlot.Rd:56: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
installed size is 151.7Mb
  sub-directories of 1Mb or more:
    include  150.6Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) Jeffreysbs.Rd:17: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'INLA'
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'rrelaxiv'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) BinaryEPPM.Rd:159: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    libs   5.9Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'select.cfs':
  'select.cfs'

S3 methods shown with full name in documentation object 'select.fast.filter':
  'select.fast.filter'

S3 methods shown with full name in documentation object 'select.forward.Corr':
  'select.forward.Corr'

S3 methods shown with full name in documentation object 'select.forward.wrapper':
  'select.forward.wrapper'

S3 methods shown with full name in documentation object 'select.inf.chi2':
  'select.inf.chi2'

S3 methods shown with full name in documentation object 'select.inf.gain':
  'select.inf.gain'

S3 methods shown with full name in documentation object 'select.inf.symm':
  'select.inf.symm'

S3 methods shown with full name in documentation object 'select.process':
  'select.process'

S3 methods shown with full name in documentation object 'select.relief':
  'select.relief'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'asreml'
'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data      1.6Mb
    extdata   1.7Mb
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    extdata   4.8Mb
    libs      1.2Mb
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc   5.5Mb
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) tocher.Rd:13: Escaped LaTeX specials: \&
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/BioVenn.Rcheck/00install.out' for details.
Depends: includes the non-default packages:
  'colorspace', 'deldir', 'rgl', 'tcltk', 'tcltk2', 'tkrplot'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'colorspace'
A package should be listed in only one of these fields.
Packages in Depends field not imported from:
  'deldir' 'rgl' 'tcltk' 'tcltk2' 'tkrplot'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
checkRd: (-1) FighterAircraft.Rd:32: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'mvMORPH'
Running examples in 'bite-Ex.R' failed
The error most likely occurred in:

> ### Name: make_jive
> ### Title: Create a list that can be used as an input to mcmc_bite
> ### Aliases: make_jive
> 
> ### ** Examples
> 
> 
> ## Load test data
> data(Anolis_traits)
> data(Anolis_tree)
> data(Anolis_map)
> 
> ## JIVE object to run jive with single regimes
> my.jive <- make_jive(phy = Anolis_tree, traits = Anolis_traits[,-3],
+  model.priors = list(mean = "BM", logvar= c("OU", "root")))
mean prior model: BM [1]
logvar prior model: OU + root [1]
> 
> ## JIVE object to run jive with multiple regimes
> my.jive <- make_jive(Anolis_tree, Anolis_traits[,-3], map = Anolis_map,
+  model.priors =list(mean = "BM", logvar = c("OU", "theta", "alpha")))
mean prior model: BM [1]
logvar prior model: OU + theta + alpha [2]
> 
> ## JIVE object to run jive from an ancestral state reconstruction (stochastic mapping)
> # First generate simmap object
> library(phytools)
Loading required package: ape
Loading required package: maps
> n= length(Anolis_tree$tip.label)
> trait = rep(0,n)
> trait[c(4,3,14,16, 6,5)] = 1
> names(trait) =  Anolis_tree$tip.label
> 
> mapped_tree=make.simmap(Anolis_tree, trait, model='SYM')
make.simmap is sampling character histories conditioned on
the transition matrix

Q =
            0           1
0 -0.01156974  0.01156974
1  0.01156974 -0.01156974
(estimated using likelihood);
and (mean) root node prior probabilities
pi =
  0   1 
0.5 0.5 
Done.
> plotSimmap(mapped_tree)
no colors provided. using the following legend:
        0         1 
  "black" "#DF536B" 
> 
> my.jive <- make_jive(mapped_tree, Anolis_traits[,-3]
+ , model.priors = list(mean = "OU" , logvar = c("OU", "theta")))
mean prior model: OU [1]
logvar prior model: OU + theta [2]
>  
>  ## Jive object using another model of trait evolution (EB from mvMORPH)
>  library(mvMORPH)
Error in library(mvMORPH) : there is no package called 'mvMORPH'
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp845zjt\file1f5d844bf311f'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
install_blat: no visible global function definition for 'download.file'
install_blat: no visible global function definition for 'unzip'
Undefined global functions or variables:
  download.file unzip
Consider adding
  importFrom("utils", "download.file", "unzip")
to your NAMESPACE file.
Package suggested but not available for checking: 'cmdstanr'
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    R          1.0Mb
    libs       3.7Mb
    testdata   1.4Mb
S3 methods shown with full name in documentation object 'blavFitIndices':
  'summary.bfi'

S3 methods shown with full name in documentation object 'ppmc':
  'summary.ppmc'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
GNU make is a SystemRequirements.
checkRd: (-1) posteriorFeasibility.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) sp500Returns.Rd:4: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   3.4Mb
    libs   1.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc       3.6Mb
    extdata   1.9Mb
    libs      1.0Mb
Error(s) in re-building vignettes:
--- re-building 'tutorial_1.Rmd' using rmarkdown
Quitting from lines 252-257 (tutorial_1.Rmd) 
Error: processing vignette 'tutorial_1.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 1st layer.
Caused by error in `rowSums()`:
! 'R_Calloc' could not allocate memory (105246 of 16 bytes)
--- failed re-building 'tutorial_1.Rmd'

SUMMARY: processing the following file failed:
  'tutorial_1.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    libs   7.4Mb
GNU make is a SystemRequirements.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   5.6Mb
Specified C++14: please drop specification unless essential
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problems found in 'mlm_path_plot.Rd', 'mlm_spaghetti_plot.Rd'
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running examples in 'bmscstan-Ex.R' failed
The error occurred in:

Error: memory exhausted (limit reached?)
Execution halted
Package suggested but not available for checking: 'INLA'
installed size is 11.4Mb
  sub-directories of 1Mb or more:
    doc    4.6Mb
    libs   4.2Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Error in xzfile(file, "wb", compression = 9) : cannot open the connection
  Calls: <Anonymous> -> resaveRdaFiles -> save -> xzfile
  In addition: Warning message:
  In xzfile(file, "wb", compression = 9) :
    cannot initialize lzma encoder, error 5
  Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
During startup - Warning message:
package 'graphics' in options("defaultPackages") was not found
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > test_check("bnstruct")
  Loading required package: bnstruct
  Loading required package: bitops
  Loading required package: igraph
  
  Attaching package: 'igraph'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  The following objects are masked from 'package:stats':
  
      decompose, spectrum
  
  The following object is masked from 'package:base':
  
      union
  
  [ FAIL 1 | WARN 3 | SKIP 1 | PASS 2 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (1)
  
  Error in gzfile(file, mode) : cannot open the connection
  Calls: test_check ... o_apply -> lapply -> FUN -> <Anonymous> -> saveRDS -> gzfile
  In addition: Warning message:
  In gzfile(file, mode) :
    cannot open compressed file 'testthat-problems.rds', probable reason 'Not enough space'
  Execution halted
'LazyData' is specified without a 'data' directory
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    data   7.0Mb
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/tools/libs/x64/tools.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Error: package or namespace load failed for 'boilerpipeR':
 .onLoad failed in loadNamespace() for 'rJava', details:
  call: get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable)
  error: object '#HAS_DUPLICATE_CLASS_NAMES' not found
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Error in namespaceExport(ns, exports) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> loadNamespace -> namespaceExport
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/BonEV.Rcheck/00install.out' for details.
installed size is 39.9Mb
  sub-directories of 1Mb or more:
    include  10.4Mb
    lib      29.2Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'doMC'
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Packages suggested but not available for checking: 'cplexAPI', 'bestsubset'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    modules 0.x
'LazyData' is specified without a 'data' directory
checkRd: (-1) bpca.Rd:85: Escaped LaTeX specials: \&
S3 methods shown with full name in documentation object 'xtable.bpca':
  'xtable.bpca'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) bp_rats.Rd:41: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
checkRd: (-1) R2txtJG.Rd:90: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
S3 methods shown with full name in documentation object 'subset.int':
  'subset.int'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'cmdstanr'
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    R     3.0Mb
    doc   3.6Mb
Package suggested but not available for checking: 'glmmADMB'
checkRd: (-1) brr-package.Rd:33: Escaped LaTeX specials: \&
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/BRugs.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/Brundle.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc    2.0Mb
    help   1.3Mb
installed size is  9.2Mb
  sub-directories of 1Mb or more:
    fonts   3.0Mb
    lib     4.5Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    data   1.1Mb
    doc    2.8Mb
    libs   3.2Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    libs   5.5Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc   4.9Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc       2.3Mb
    extdata   3.4Mb
'LazyData' is specified without a 'data' directory
checkRd: (-1) kink_estimator.Rd:60: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) deleteZeroComponents.Rd:70: Escaped LaTeX specials: \& \&
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/Cairo.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ReGenesees'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc        2.1Mb
    pictures   4.1Mb
checkRd: (-1) caic-class.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) caic-class.Rd:15: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    captr .1.4
    captr .1.3
    captr .1.2
'LazyData' is specified without a 'data' directory
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc   5.7Mb
Specified C++11: please drop specification unless essential
Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
checkRd: (-1) States.Rd:48: Escaped LaTeX specials: \$
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc   4.6Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'GAMBoost'
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> 
> ### Name: vaso
> ### Title: Vasoconstriciton and Breathing
> ### Aliases: vaso
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## Not run: 
> ##D ##look for:
> ##D vignette("binary-vaso")
> ## End(Not run)
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  4.21 3.49 8.66 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 38.0Mb
  sub-directories of 1Mb or more:
    doc  37.7Mb
checkRd: (-1) belt.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) bipf.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) crime.Rd:17: Escaped LaTeX specials: \&
checkRd: (-1) da.cat.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) dabipf.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) ecm.cat.Rd:77: Escaped LaTeX specials: \&
checkRd: (-1) em.cat.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) ipf.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) logpost.cat.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) mda.cat.Rd:67: Escaped LaTeX specials: \&
checkRd: (-1) mi.inference.Rd:140: Escaped LaTeX specials: \&
checkRd: (-1) older.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) prelim.cat.Rd:67: Escaped LaTeX specials: \&
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) tpcExample.Rd:30: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package required but not available: 'approxOT'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    libs  11.1Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'CirceR'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    data   3.2Mb
    doc    2.2Mb
    libs   1.7Mb
Unexported objects imported by ':::' calls:
  'copula:::dCdu' 'copula:::fitCopStart'
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'alr3'
Problems with news in 'NEWS.md':
No news entries found.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Major refactoring of the code
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 38.7Mb
  sub-directories of 1Mb or more:
    include  38.4Mb
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   5.5Mb
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
S3 methods shown with full name in documentation object 'select.cglasso':
  'select.cglasso'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'internals':
  'max.rss'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    extdata   4.6Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  checks.c:488:81: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'R_xlen_t' {aka 'long long int'} [-Wformat=]
  checks.c:492:81: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'R_xlen_t' {aka 'long long int'} [-Wformat=]
  checks.c:496:81: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'R_xlen_t' {aka 'long long int'} [-Wformat=]
See 'd:/Rcompile/CRANpkg/local/4.3/checkmate.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
'LazyData' is specified without a 'data' directory
checkRd: (-1) hyptis.Rd:31: Escaped LaTeX specials: \&
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Package suggested but not available for checking: 'countreg'
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Package suggested but not available for checking: 'cmdstanr'
Package unavailable to check Rd xrefs: 'cmdstanr'
Problems with news in 'NEWS.md':
No news entries found.
installed size is  5.5Mb
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    doc    1.5Mb
    help   2.2Mb
installed size is 18.0Mb
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    doc    3.6Mb
    libs   1.0Mb
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Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    clhs_0.7-2
    clhs_0.7-0
    clhs_0.6-0
    clhs_0.5-7
    clhs_0.5-6
    clhs_0.5-3
    clhs_0.5-2
    clhs_0.5-1
    clhs_0.5-0
    clhs_0.4-3
    clhs_0.4-2
    clhs_0.4-1
    clhs_0.4-0
    clhs_0.3-2
    clhs_0.3-1
    clhs_0.3-0
    clhs_0.2-1
    clhs_0.2-0
    clhs_0.1-0
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    doc    1.9Mb
installed size is  5.5Mb
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checkRd: (-1) clme.Rd:84: Escaped LaTeX specials: \&
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installed size is  6.0Mb
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Problems with news in 'NEWS.md':
No news entries found.
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'LazyData' is specified without a 'data' directory
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    data   5.2Mb
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Problems with news in 'NEWS.md':
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
installed size is  5.2Mb
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    extdata   1.7Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/coarseDataTools.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) drqssbc.Rd:83: Escaped LaTeX specials: \&
checkRd: (-1) qbsks.Rd:81: Escaped LaTeX specials: \&
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Package which this enhances but not available for checking: 'rkward'
Package which this enhances but not available for checking: 'rkward'
Package suggested but not available for checking: 'userfriendlyscience'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/codemetar.Rcheck/00install.out' for details.
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
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    doc   4.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
installed size is  5.3Mb
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    extdata   2.0Mb
Unexported object imported by a ':::' call: 'crayon:::mypaste'
  See the note in ?`:::` about the use of this operator.
Problems with news in 'NEWS.md':
No news entries found.
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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Package suggested but not available for checking: 'CAM'
S3 methods shown with full name in documentation object 'compareGroups-internal':
  'formula.compareGroups' 'update.formula2' 'summary.snp2'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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checkRd: (-1) babies.Rd:35: Escaped LaTeX specials: \&
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No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/configr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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Packages suggested but not available for checking: 'conosPanel', 'p2data'
Specified C++11: please drop specification unless essential
installed size is  5.2Mb
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GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
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'LazyData' is specified without a 'data' directory
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Package suggested but not available for checking: 'fitbitViz'
installed size is  7.5Mb
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    vignette_data   2.6Mb
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Package suggested but not available for checking: 'cec2005benchmark'
'LazyData' is specified without a 'data' directory
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    R     2.1Mb
    doc   3.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
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checkRd: (-1) BrownBigrams.Rd:14: Escaped LaTeX specials: \&
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Found the following significant warnings:
  stemmer.c:171:47: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness [-Wpointer-sign]
See 'd:/Rcompile/CRANpkg/local/4.3/corpus.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
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checkRd: (-1) egde.Rd:26: Escaped LaTeX specials: \&
S3 methods shown with full name in documentation object 'mChoose':
  'mc.est.raw'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Package suggested but not available for checking: 'rmcorr'
'LazyData' is specified without a 'data' directory
installed size is 18.0Mb
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checkRd: (-1) cosmoFns-package.Rd:34: Escaped LaTeX specials: \&
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'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
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    doc       1.6Mb
    extdata   2.6Mb
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'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/cplm.Rcheck/00install.out' for details.
Specified C++14: please drop specification unless essential
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GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Non-visible changes:
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc   5.1Mb
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
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Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Major features
    Minor features
checkRd: (-1) handmovement.Rd:9: Escaped LaTeX specials: \_ \_
installed size is  5.7Mb
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.0Mb
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    data   3.3Mb
    doc    1.5Mb
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    data   7.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'internals':
  'qr.gs'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
installed size is  9.9Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    data   1.5Mb
    libs   5.9Mb
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'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.8Mb
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    doc    1.7Mb
    libs   3.9Mb
File 'curl/libs/x64/curl.dll':
  Found non-API call to R: 'R_new_custom_connection'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> plot(gate2)
> 
> # Trivariate curvHDR example:
> 
> ## Not run: 
> ##D xTriv <- cbind(c(rnorm(1000,-2),rnorm(1000,2)),
> ##D                c(rnorm(1000,-2),rnorm(1000,2)),
> ##D                c(rnorm(1000,-2),rnorm(1000,2)))
> ##D gate3 <- curvHDRfilter(xTriv)
> ##D plot(gate3)
> ## End(Not run)
> 
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  10.22 1 11.28 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
'LazyData' is specified without a 'data' directory
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Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Misc
checkRd: (-1) abs_d_ppv_npv.Rd:27: Escaped LaTeX specials: \_ \_ \_
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'LazyData' is specified without a 'data' directory
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'lattice' 'robustbase'
A package should be listed in only one of these fields.
Packages which this enhances but not available for checking:
  'Rcplex', 'gurobi', 'rcbc'
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R      2.7Mb
    doc    1.2Mb
    help   1.0Mb
    libs   1.2Mb
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    extdata       1.3Mb
    htmlwidgets   1.4Mb
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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checkRd: (-1) dspg.Rd:29: Escaped LaTeX specials: \^ \^
checkRd: (-1) dspgd2015.Rd:31: Escaped LaTeX specials: \^ \^
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Package suggested but not available for checking: 'codemetar'
Package which this enhances but not available for checking: 'doMC'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
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    doc   4.4Mb
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installed size is 10.9Mb
  sub-directories of 1Mb or more:
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'LazyData' is specified without a 'data' directory
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    deps   6.5Mb
'LazyData' is specified without a 'data' directory
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    java   7.5Mb
Specified C++11: please drop specification unless essential
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Datastream DWE - now decommissioned by Refinitiv
    CRAN
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc    3.2Mb
    libs   1.1Mb
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'dblog'
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'LazyData' is specified without a 'data' directory
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Specified C++11: please drop specification unless essential
S3 methods shown with full name in documentation object 'dbglm-inl':
  'dbglm.iteration'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Running examples in 'DCD-Ex.R' failed
The error most likely occurred in:

> ### Name: DCD
> ### Title: Differential Community Detection for Paired Biological Networks,
> ###   for e.g. case vs control
> ### Aliases: DCD
> 
> ### ** Examples
> 
> 
> DCD_output <- DCD()
..connectivity..
..matrix multiplication (system BLAS)..
..normalization..
..done.
..connectivity..
..matrix multiplication (system BLAS)..
..normalization..
..done.
> ## Not run: 
> ##D library(igraph)
> ##D g_A <- sample_grg(200, 0.15, torus=FALSE, coords = FALSE)
> ##D g_B <- permute(g_A,c(sample(20),21:200))
> ##D ground_truth <- c(rep(1,20),rep(0,180))
> ##D DCD_output2 <- DCD(g_A = g_A, g_B = g_B, method = "Spectral", mink = 7,
> ##D                    ground_truth = ground_truth, plot_flag = 1, color = "red",
> ##D                    iter = 1, cores = 1 )
> ##D   
> ## End(Not run)
> 
> 
> 
> cleanEx()
Error: connections left open:
	<-CRANWIN2.fb05.statistik.uni-dortmund.de:11270 (sockconn)
Execution halted
Problems with news in 'NEWS.md':
No news entries found.
Package suggested but not available for checking: 'doMC'
installed size is  5.4Mb
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    data   4.1Mb
Package suggested but not available for checking: 'BRugs'
Package suggested but not available for checking: 'INLA'
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'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Changes from previous package DecompHoriuchi
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GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
installed size is  7.2Mb
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    extdata   2.1Mb
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There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  '.N' '.Nmiss' '.Q1' '.Q3' '.factorN' '.factorNmiss' '.factorQ1'
  '.factorQ3' '.factormax' '.factormean' '.factormedian' '.factormin'
  '.factorsd' '.max' '.mean' '.median' '.min' '.sd'
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    libs   1.2Mb
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    htmlwidgets   3.6Mb
GNU make is a SystemRequirements.
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installed size is 10.8Mb
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checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
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installed size is 13.1Mb
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GNU make is a SystemRequirements.
checkRd: (-1) sammy.Rd:51: Escaped LaTeX specials: \$
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    extdata   4.2Mb
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checkRd: (-1) booter.Rd:68: Escaped LaTeX specials: \&
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Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
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installed size is 17.0Mb
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    libs  13.6Mb
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Changes to previous versions
    Minor changes
    Fixes
    Previous Versions
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S3 methods shown with full name in documentation object 'dmm-internal':
  'csummary.specific' 'dmm.array' 'dmm.blockarray' 'duplicated.first'
  'gsummary.specific'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
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S3 methods shown with full name in documentation object 'add.joint.mean.many':
  'all.cond.mean.PO' 'all.cond.mean2.PO'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
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GNU make is a SystemRequirements.
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S3 methods shown with full name in documentation object 'GWLP':
  'levels.no'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Package which this enhances but not available for checking: 'gurobi'
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installed size is  6.5Mb
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    R         2.1Mb
    data      2.0Mb
    extdata   2.3Mb
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    New features
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    assets   2.9Mb
    doc      2.1Mb
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installed size is  5.4Mb
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No news entries found.
Error(s) in re-building vignettes:
--- re-building 'DriveML.Rmd' using rmarkdown
Quitting from lines 341-343 (DriveML.Rmd) 
Error: processing vignette 'DriveML.Rmd' failed with diagnostics:
could not find function "discrete_range"
--- failed re-building 'DriveML.Rmd'

SUMMARY: processing the following file failed:
  'DriveML.Rmd'

Error: Vignette re-building failed.
Execution halted
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installed size is  5.5Mb
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    doc   2.3Mb
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'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
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    htmlwidgets   4.6Mb
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GNU make is a SystemRequirements.
installed size is  5.2Mb
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'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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installed size is  9.1Mb
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    data   4.2Mb
    doc    1.7Mb
    libs   2.8Mb
Package suggested but not available for checking: 'cmdstanr'
installed size is 11.2Mb
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    R      3.1Mb
    data   7.3Mb
Package unavailable to check Rd xrefs: 'cmdstanr'
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
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'LazyData' is specified without a 'data' directory
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    data   2.5Mb
    doc    1.5Mb
installed size is  5.1Mb
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    data   3.9Mb
    libs   1.0Mb
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installed size is  5.4Mb
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    data   3.1Mb
    libs   1.8Mb
'LazyData' is specified without a 'data' directory
installed size is  6.0Mb
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    bin       3.1Mb
    extdata   1.7Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    20181118
'LazyData' is specified without a 'data' directory
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/igraph/libs/x64/igraph.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous>
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error: lazy-load database 'D:/RCompile/recent/R/library/methods/R/methods.rdb' is corrupt
Call sequence:
5: .updateMethodsInTable(fdef, where, attach)
4: methods::cacheMetaData(ns, TRUE, ns)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
GNU make is a SystemRequirements.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mvabund
Error in readRDS(mapfile) : error reading from connection
Error: package or namespace load failed for 'mvabund':
 unable to load R code in package 'MASS'
Error: package 'mvabund' could not be loaded
Execution halted
Package required but not available: 'vegclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following possibly unsafe calls:
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/tools/libs/x64/tools.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Package suggested but not available for checking: 'vegclust'
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate memory for pointer stack
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    TODO:
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is 12.6Mb
  sub-directories of 1Mb or more:
    libs  12.5Mb
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'eggCountsExtra'
Specified C++14: please drop specification unless essential
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   6.1Mb
GNU make is a SystemRequirements.
installed size is 11.4Mb
  sub-directories of 1Mb or more:
    doc       6.1Mb
    extdata   5.1Mb
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'bisg.Rmd' using rmarkdown
Warning in dev.off(dv) : processing of the plot ran out of memory
Error: processing vignette 'bisg.Rmd' failed with diagnostics:
pandoc document conversion failed with error 322
--- failed re-building 'bisg.Rmd'

--- re-building 'ei.Rmd' using rmarkdown
Warning in dev.off(dv) : processing of the plot ran out of memory
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'ei.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'ei.Rmd'

--- re-building 'geocoding.Rmd' using rmarkdown
--- finished re-building 'geocoding.Rmd'

--- re-building 'parallel_processing.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'parallel_processing.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'parallel_processing.Rmd'

--- re-building 'performance_analysis.Rmd' using rmarkdown
Warning in png(..., res = dpi, units = "in") :
  unable to allocate bitmap
Warning in png(..., res = dpi, units = "in") : opening device failed
Quitting from lines 136-150 (performance_analysis.Rmd) 
Warning in dev.off(dv) : processing of the plot ran out of memory
Error: processing vignette 'performance_analysis.Rmd' failed with diagnostics:
unable to start png() device
--- failed re-building 'performance_analysis.Rmd'

SUMMARY: processing the following files failed:
  'bisg.Rmd' 'ei.Rmd' 'parallel_processing.Rmd'
  'performance_analysis.Rmd'

Error: Vignette re-building failed.
Execution halted
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### Title: Function to add values for variables on emission files
> ### Aliases: wrf_add
> 
> ### ** Examples
> 
> {
+ # create the folder and emission file
+ dir.create(file.path(tempdir(), "EMISS"))
+ wrf_create(wrfinput_dir = system.file("extdata", package = "eixport"),
+            wrfchemi_dir = file.path(tempdir(), "EMISS"))
+ 
+ # get the name of created file
+ files <- list.files(path = file.path(tempdir(), "EMISS"),
+                     pattern = "wrfchemi",
+                     full.names = TRUE)
+ 
+ # open, put some numbers and write
+ CO <- wrf_get(file = files[1], name = "E_CO")
+ CO[] = rnorm(length(CO),mean = 5,sd = 1)
+ wrf_put(file = files[1], name = "E_CO", POL = CO)
+ # open, put some different numbers and write
+ CO[] = rnorm(length(CO),mean = 10,sd = 1)
+ wrf_add(file = files[1], name = "E_CO", POL = CO)
+ }
NOTE: see wrf_create domumentation notes before run

creating emission for domain1...

output file:D:\temp\RtmpKuct5O/EMISS/wrfchemi_d01_2011-08-01_00%3A00%3A00

======== End of example output (where/before crash/hang up occured ?) ========
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checkRd: (-1) tri.audit.sim.Rd:47: Escaped LaTeX specials: \_
checkRd: (-1) tri.calc.sample.Rd:34: Escaped LaTeX specials: \_
checkRd: (-1) tri.sample.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:36: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:49: Escaped LaTeX specials: \$
checkRd: (-1) weight.function.Rd:16: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   4.0Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    emoji_fonts   6.4Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Math2:
  function(x, digits)
Math2.trackdata:
  function(x)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
checkRd: (-1) encode.character.Rd:22: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpUvjDSC\file1d18057c86399'
Running examples in 'ensembleBMA-Ex.R' failed
The error most likely occurred in:

> ### Name: ensembleBMAgamma
> ### Title: BMA wind speed modeling
> ### Aliases: ensembleBMAgamma [.ensembleBMAgamma
> ### Keywords: models
> 
> ### ** Examples
> 
>   data(ensBMAtest)
Warning in readChar(con, 5L, useBytes = TRUE) :
  lzma decoder needed more memory
Error in load(zfile, envir = tmp_env) : empty (zero-byte) input file
Calls: data -> load
Execution halted
Fatal error: couldn't allocate node stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running massageExamples to create 'entropart-Ex.R' failed

 NONE
'LazyData' is specified without a 'data' directory
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af

Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    R      2.3Mb
    help   3.4Mb
checkRd: (-1) calibrate.Rd:151: Escaped LaTeX specials: \&
checkRd: (-1) cdfCompareCensored.Rd:299: Escaped LaTeX specials: \&
checkRd: (-1) detectionLimitCalibrate.Rd:149: Escaped LaTeX specials: \&
checkRd: (-1) ecdfPlotCensored.Rd:169: Escaped LaTeX specials: \&
checkRd: (-1) egammaAltCensored.Rd:344: Escaped LaTeX specials: \&
checkRd: (-1) egammaCensored.Rd:340: Escaped LaTeX specials: \&
checkRd: (-1) elnormAltCensored.Rd:694: Escaped LaTeX specials: \&
checkRd: (-1) elnormCensored.Rd:270: Escaped LaTeX specials: \&
checkRd: (-1) enormCensored.Rd:852: Escaped LaTeX specials: \&
checkRd: (-1) enparCensored.Rd:343: Escaped LaTeX specials: \&
checkRd: (-1) enparCensored.Rd:358: Escaped LaTeX specials: \&
checkRd: (-1) epoisCensored.Rd:354: Escaped LaTeX specials: \&
checkRd: (-1) ppointsCensored.Rd:406: Escaped LaTeX specials: \&
checkRd: (-1) predIntGammaSimultaneous.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) predIntGammaSimultaneous.Rd:171: Escaped LaTeX specials: \&
checkRd: (-1) predIntLnormSimultaneous.Rd:136: Escaped LaTeX specials: \&
checkRd: (-1) predIntLnormSimultaneous.Rd:137: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneous.Rd:204: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneous.Rd:205: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneousK.Rd:277: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneousK.Rd:278: Escaped LaTeX specials: \&
checkRd: (-1) qqPlotCensored.Rd:261: Escaped LaTeX specials: \&
checkRd: (-1) twoSampleLinearRankTest.Rd:276: Escaped LaTeX specials: \&
checkRd: (-1) twoSampleLinearRankTestCensored.Rd:324: Escaped LaTeX specials: \&
checkRd: (-1) twoSampleLinearRankTestCensored.Rd:331: Escaped LaTeX specials: \&
Fatal error: couldn't allocate node stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Error in gzfile(file, "rb") : cannot open the connection
In addition: Warning message:
In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/methods/R/methods.rdx', probable reason 'Not enough space'
During startup - Warning message:
package "methods" in options("defaultPackages") was not found 

During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation

Found the following possibly unsafe calls:
Fatal error: couldn't allocate memory for pointer stack
checkRd: (-1) risk.display.rd:98: Escaped LaTeX specials: \$
Package suggested but not available for checking: 'epidict'
AaJ:
  function(Lx, ...)
AaJ.Lexis:
  function(Lx, formula, timeScale)

addCov:
  function(Lx, ...)
addCov.Lexis:
  function(Lx, clin, timescale, exnam, tfc)

addDrug:
  function(Lx, ...)
addDrug.Lexis:
  function(Lx, pdat, amt, dpt, apt, method, maxt, grace, tnam, prefix,
           sepfix, verbose)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
S3 methods shown with full name in documentation object 'addDrug.Lexis':
  'addDrug.Lexis'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error(s) in re-building vignettes:
--- re-building 'epiR_descriptive.Rmd' using rmarkdown
--- finished re-building 'epiR_descriptive.Rmd'

--- re-building 'epiR_measures_of_association.Rmd' using rmarkdown
--- finished re-building 'epiR_measures_of_association.Rmd'

--- re-building 'epiR_sample_size.Rmd' using rmarkdown
--- finished re-building 'epiR_sample_size.Rmd'

--- re-building 'epiR_surveillance.Rmd' using rmarkdown
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  unable to allocate bitmap
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  opening device failed
Quitting from lines 317-343 (epiR_surveillance.Rmd) 
Error: processing vignette 'epiR_surveillance.Rmd' failed with diagnostics:
unable to start png() device
--- failed re-building 'epiR_surveillance.Rmd'

SUMMARY: processing the following file failed:
  'epiR_surveillance.Rmd'

Error: Vignette re-building failed.
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpULR13h\file322385e7529b7'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpULR13h\file322385e7529b7'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'Covid_vignette.Rmd' using rmarkdown
--- finished re-building 'Covid_vignette.Rmd'

--- re-building 'HY_vignette.Rmd' using rmarkdown
--- re-building 'mhcII-hu.Rmd' using rmarkdown
--- finished re-building 'mhcII-hu.Rmd'

SUMMARY: processing the following file failed:
  'HY_vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp0atjRx\file1fa4845697cb1'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'summary.error_interval':
  'summary.error_interval'

S3 methods shown with full name in documentation object 'summary.measure':
  'summary.measure'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 13.6Mb
  sub-directories of 1Mb or more:
    doc  13.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> 
> ### ** Examples
> 
> library(ggplot2)
> p <- ggplot(mtcars) + 
+  geom_point(aes(x = wt, y = mpg, 
+ colour=factor(gear))) + facet_wrap(~am)
> p
> p + theme_edi()
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()

detaching 'package:ggplot2'

> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  18.18 5.06 27.14 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Running examples in 'espadon-Ex.R' failed
The error most likely occurred in:

> ### Name: bin.closing
> ### Title: Binary volume closing
> ### Aliases: bin.closing
> 
> ### ** Examples
> 
> # loading of toy-patient objects (decrease dxyz for better result)
> step <- 4
> patient <- toy.load.patient (modality = "mr", roi.name = "", 
+                              dxyz = rep (step, 3))
Error: cannot allocate vector of size 1024 Kb
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) aic.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) aic.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:64: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [161s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(esvis)
  > 
  > test_check("esvis")
  [ FAIL 1 | WARN 19 | SKIP 0 | PASS 76 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-v.R:17:3'): Reference group subsetting works correctly ─────────
  <dplyr:::mutate_error/rlang_error/error/condition>
  Error in `mutate(., matched = map2(.data$nd, .data$nd1, ~data.frame(x = sort(unique(.x$x, 
      .y$x))) %>% left_join(.x, by = "x") %>% left_join(.y, by = "x", 
      suffix = c("_ref", "_foc")) %>% fill(names(.))))`: ℹ In argument: `matched = map2(...)`.
  ℹ In group 1: `grade = "3"`.
  Caused by error in `map2()`:
  ℹ In index: 2.
  Caused by error in `readRDS()`:
  ! error reading from connection
  
  [ FAIL 1 | WARN 19 | SKIP 0 | PASS 76 ]
  Error: Test failures
  Execution halted
S3 methods shown with full name in documentation object 'ETAS-internal':
  'Smooth.catalog'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    extdata   4.0Mb
    libs      1.0Mb
Error(s) in re-building vignettes:
--- re-building 'etmCIF_tutorial.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "etmCIF_tutorial.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'etmCIF_tutorial.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'etmCIF_tutorial.pdf' for vignette with name 'etmCIF_tutorial' and engine 'utils::Sweave'. The following files exist in working directory 'D:\RCompile\CRANpkg\local\4.3\etm.Rcheck\vign_test\etm\vignettes': 'etmCIF_tutorial-006.pdf' (4676 bytes), 'etmCIF_tutorial-007.pdf' (4745 bytes), 'etmCIF_tutorial-008.pdf' (4758 bytes), 'etmCIF_tutorial-009.pdf' (5294 bytes), 'etmCIF_tutorial-010.pdf' (4961 bytes), 'etmCIF_tutorial-015.pdf' (4915 bytes), 'etmCIF_tutorial.Rnw' (10850 bytes), 'etmCIF_tutorial.tex' (16086 bytes)
--- failed re-building 'etmCIF_tutorial.Rnw'

SUMMARY: processing the following file failed:
  'etmCIF_tutorial.Rnw'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
Error: package 'dplyr' could not be loaded
Call sequence:
3: stop(gettextf("package %s could not be loaded", sQuote(pkg)), 
       call. = FALSE, domain = NA)
2: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpsVTEjZ\file2f3a87d235709'
Fatal error: couldn't allocate node stack
Running 'testthat.R' [0s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
Fatal error: couldn't allocate node stack
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc   6.0Mb
Specified C++11: please drop specification unless essential
Loading this package had a fatal error status code 1
Loading log:
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Error: package or namespace load failed for 'evgam' in get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable):
 object '#HAS_DUPLICATE_CLASS_NAMES' not found
Execution halted
checkRd: (-1) Snoring.Rd:21: Escaped LaTeX specials: \&
Running examples in 'evmix-Ex.R' failed
The error occurred in:


R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "evmix"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> options(pager = "console")
> library('evmix')
Loading required package: MASS
Warning in FUN(X[[i]], ...) : internal error 5 in R_decompress3
Error in FUN(X[[i]], ...) : 
  lazy-load database 'D:/RCompile/recent/R/library/datasets/data/Rdata.rdb' is corrupt
Calls: library ... library -> checkConflicts -> same.isFn -> vapply -> FUN
Execution halted
Error: there is no package called 'igraph'
Call sequence:
15: doWithOneRestart(return(expr), restart)
14: withOneRestart(expr, restarts[[1L]])
13: withRestarts(stop(cond), retry_loadNamespace = function() NULL)
12: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
11: asNamespace(ns)
10: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
        .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
9: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
8: asNamespace(ns)
7: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: na
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/mvtnorm/libs/x64/mvtnorm.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous>
Execution halted
Fatal error: couldn't allocate node stack
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data      2.5Mb
    doc       1.6Mb
    extdata   2.4Mb
Fatal error: couldn't allocate node stack
Warning in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  :
  TRE pattern compilation error 'Out of memory'
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]', reason 'Out of memory'
Calls: <Anonymous> ... .find_calls_in_package_code -> list_files_with_type -> grep
Execution halted
Error: package 'libcoin' could not be loaded
Call sequence:
5: stop(gettextf("package %s could not be loaded", sQuote(pkg)), 
       call. = FALSE, domain = NA)
4: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
3: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc, 
       quietly = quietly)
2: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running massageExamples to create 'evtree-Ex.R' failed

 NONE
Errors in running code in vignettes:
when running code in 'evtree.Rnw'

... incomplete output.  Crash?

  'evtree.Rnw'... failed to complete the test
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'TwoSidedPoissonCIs.Rmd' using rmarkdown
--- finished re-building 'TwoSidedPoissonCIs.Rmd'

--- re-building 'exactci.Rnw' using Sweave
Loading required package: ssanv
Loading required package: testthat
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "exactci.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'exactci.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'exactci.pdf' for vignette with name 'exactci' and engine 'utils::Sweave'. The following files exist in working directory 'D:\RCompile\CRANpkg\local\4.3\exactci.Rcheck\vign_test\exactci\vignettes': 'TwoSidedPoissonCIs.R' (7037 bytes), 'TwoSidedPoissonCIs.Rmd' (15999 bytes), 'TwoSidedPoissonCIs.html' (46329 bytes), 'exactci.Rnw' (4181 bytes), 'exactci.tex' (5702 bytes)
--- failed re-building 'exactci.Rnw'

SUMMARY: processing the following file failed:
Warning in strsplit(x, "\n[ \t\n]*\n", perl = TRUE) :
  PCRE error
	'no more memory'
	for element 1
  'exactci.Rnw'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Specified C++14: please drop specification unless essential
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpyG8vAE\filedd803e766f2'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Output for data("bloodp", package = "exactRankTests"):
  Fatal error: couldn't allocate node stack
  
Output for data("ears", package = "exactRankTests"):
  Fatal error: couldn't allocate node stack
  
Output for data("glioma", package = "exactRankTests"):
  Mingw-w64 runtime failure:
    VirtualProtect failed with code 0x5af
Package suggested but not available for checking: 'ExactData'
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$', reason 'Out of memory'
Calls: <Anonymous> -> grep
In addition: Warning message:
In grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  :
  TRE pattern compilation error 'Out of memory'
Execution halted
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Error: package or namespace load failed for 'exampletestr' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 301
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Found the following significant warnings:
  RCOMObject.cpp:125:12: warning: format '%p' expects argument of type 'void*', but argument 3 has type 'SEXP' {aka 'SEXPREC*'} [-Wformat=]
See 'd:/Rcompile/CRANpkg/local/4.3/excel.link.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
Error: package or namespace load failed for 'excel.link' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/excel.link/libs/x64/excel.link.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Error in gzfile(file, "rb") : cannot open the connection
In addition: Warning message:
In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/stats/R/stats.rdx', probable reason 'Not enough space'
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found
Fatal error: couldn't allocate node stack
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpWMPGE2\file3ce8173efa1'
Fatal error: couldn't allocate node stack

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running examples in 'excluder-Ex.R' failed
The error occurred in:
Package suggested but not available for checking: 'INLA'
Specified C++11: please drop specification unless essential
During startup - Warning message:
package 'graphics' in options("defaultPackages") was not found 
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
installed size is 14.2Mb
  sub-directories of 1Mb or more:
    exiftool  14.1Mb
Error in grepl(.valid_maintainer_field_regexp, val) : 
  invalid regular expression '^[[:space:]]*(.*<(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+>|ORPHANED)[[:space:]]*$', reason 'Out of memory'
Calls: <Anonymous> -> grepl
In addition: Warning message:
In grepl(.valid_maintainer_field_regexp, val) :
  TRE pattern compilation error 'Out of memory'
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Fatal error: couldn't allocate node stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
checkRd: (-1) ccF.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:29: Escaped LaTeX specials: \&
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
9: inDL(x, as.logical(local), as.logical(now), ...)
8: dyn.load(file, DLLpath = DLLpath, ...)
7: library.dynam(lib, package, package.lib)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: namespaceImport(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), 
       versionCheck = vI[[j]]), from = package, except = i$except)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Found the following possibly unsafe calls:
Error in addExports(ns, new) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: getNamespace -> loadNamespace -> namespaceExport -> addExports
In addition: Warning message:
In addExports(ns, new) : internal error -4 in R_decompress1
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Found the following possibly unsafe calls:
Fatal error: couldn't allocate node stack
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running massageExamples to create 'experiment-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpwRDgFt\file1f11453031191'
'LazyData' is specified without a 'data' directory
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    libs   5.4Mb
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problem found in 'gammainc.Rd'
Fatal error: couldn't allocate node stack
Error: package or namespace load failed for 'exploratory':
 cannot allocate vector of size 1.9 Mb
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/grDevices/libs/x64/grDevices.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: .onLoad failed in loadNamespace() for 'rlang', details:
  call: detect_installed(info)
  error: lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/rlang/R/rlang.rdb' is corrupt
Call sequence:
9: stop(gettextf("%s failed in %s() for '%s', details:\n  call: %s\n  error: %s", 
       hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], 
       conditionMessage(res)), call. = FALSE, domain = NA)
8: runHook(".onLoad", env, package.lib, package)
7: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), fro
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Error in readRDS(mapfile) : error reading from connection
During startup - Warning message:
package 'grDevices' in options("defaultPackages") was not found 
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$', reason 'Out of memory'
Calls: <Anonymous> -> grep
In addition: Warning message:
In grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  :
  TRE pattern compilation error 'Out of memory'
Execution halted
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Error: package or namespace load failed for 'explor' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
Fatal error: couldn't allocate memory for pointer stack
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/expm/libs/x64/expm.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
4: inDL(x, as.logical(local), as.logical(now), ...)
3: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
1: loadNamespace(package, lib.loc)
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Fatal error: couldn't allocate node stack


Found the following possibly unsafe calls:
Error: cannot allocate vector of size 202 Kb
Execution halted
Running massageExamples to create 'expm-Ex.R' failed

 NONE
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate memory for pointer stack
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/digest/libs/x64/digest.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
17: inDL(x, as.logical(local), as.logical(now), ...)
16: dyn.load(file, DLLpath = DLLpath, ...)
15: library.dynam(lib, package, package.lib)
14: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
13: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
        versionCheck = vI[[i]]), from = package)
12: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
11: asNamespace(ns)
10: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
        .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
9: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
8: asNamespace(ns)
7: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = 
Execution halted
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/httpuv/libs/x64/httpuv.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
17: inDL(x, as.logical(local), as.logical(now), ...)
16: dyn.load(file, DLLpath = DLLpath, ...)
15: library.dynam(lib, package, package.lib)
14: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
13: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
        versionCheck = vI[[i]]), from = package)
12: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
11: asNamespace(ns)
10: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
        .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
9: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
8: asNamespace(ns)
7: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = 
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
Loading required package: forecast
Error: package or namespace load failed for 'forecast' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Error: package 'forecast' could not be loaded
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
During startup - Warning message:
package 'graphics' in options("defaultPackages") was not found
Error in readRDS(mapfile) : error reading from connection
  During startup - Warning message:
  package 'graphics' in options("defaultPackages") was not found 
  Error in file.copy(files, cpdir) : could not allocate copy buffer
  Calls: <Anonymous> -> file.copy
  Execution halted
Running examples in 'expsmooth-Ex.R' failed
The error occurred in:

Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 1
Loading log:
Error in readRDS(pfile) : error reading from connection
Calls: library ... as.numeric_version -> is.numeric_version -> readRDS
Execution halted
During startup - Warning messages:
1: In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/stats/Meta/package.rds', probable reason 'Not enough space'
2: package 'stats' in options("defaultPackages") was not found
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Fatal error: couldn't allocate node stack
Error in R.version[c("major", "minor")] : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: Sys.setenv -> .expand_R_libs_env_var -> paste -> [
In addition: Warning message:
In R.version[c("major", "minor")] : internal error -4 in R_decompress1
Execution halted
Error: cannot allocate vector of size 1.3 Mb
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Error in readRDS(mapfile) : error reading from connection
During startup - Warning message:
package "methods" in options("defaultPackages") was not found 

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Error: .onLoad failed in loadNamespace() for 'methods', details:
  call: NULL
  error: cannot allocate vector of size 324 Kb
Execution halted
Fatal error: couldn't allocate node stack
Error loading dataset 'crps': no input is available
  Call sequence:
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
checkRd: (-1) sp500.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) outlierPlot.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) outlierPlot.Rd:32: Escaped LaTeX specials: \$
Package suggested but not available for checking: 'exuberdata'
Package suggested but not available for checking: 'doMC'
Error: .onLoad failed in loadNamespace() for 'rlang', details:
  call: readRDS(file)
  error: error reading from connection
Call sequence:
9: stop(gettextf("%s failed in %s() for '%s', details:\n  call: %s\n  error: %s", 
       hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], 
       conditionMessage(res)), call. = FALSE, domain = NA)
8: runHook(".onLoad", env, package.lib, package)
7: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
8: inDL(x, as.logical(local), as.logical(now), ...)
7: dyn.load(file, DLLpath = DLLpath, ...)
6: library.dynam(lib, package, package.lib)
5: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
4: namespaceImport(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), 
       versionCheck = vI[[j]]), from = package, except = i$except)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following files with non-ASCII characters:
  Fatal error: couldn't allocate node stack
  
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: NMF
Loading required package: registry
Loading required package: rngtools
Loading required package: cluster
Error: package or namespace load failed for 'NMF' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/magrittr/libs/x64/magrittr.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Error: package 'NMF' could not be loaded
Execution halted
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate memory for pointer stack
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Error in readRDS(mapfile) : error reading from connection
Error: package or namespace load failed for 'fabMix':
 unable to load R code in package 'grid'
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate memory for pointer stack
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Loading this package had a fatal error status code 301
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$', reason 'Out of memory'
Calls: <Anonymous> -> grep
In addition: Warning message:
In grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  :
  TRE pattern compilation error 'Out of memory'
Execution halted
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Error(s) in re-building vignettes:
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See sections 'The INDEX file' and 'Package subdirectories' in the
'Writing R Extensions' manual.
Fatal error: couldn't allocate memory for pointer stack
'LazyData' is specified without a 'data' directory
Loading required package: MASS
Loading required package: grDevices
Loading required package: graphics
Loading required package: stats
Loading required package: utils
Loading required package: partitions
Error: package or namespace load failed for 'partitions' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/rbibutils/libs/x64/rbibutils.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Error: package 'partitions' could not be loaded
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    minor changes
Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 301
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/factory.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc   5.3Mb
Error in readRDS(mapfile) : error reading from connection
Error: unable to load R code in package 'compiler'
Execution halted
File 'fame/R/windows/zzz.R':
  .onLoad calls:
    packageStartupMessage("FAME environment variable not set; assuming ",     defaultDir)
    packageStartupMessage("FAME directory ", fameDir, " not found.\n",     "If you have FAME installed, specify it's location ", "via the FAME environment variable.\n",     "Otherwise, this package is pretty useless.\n")

See section 'Good practice' in '?.onAttach'.
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    R      3.5Mb
    doc    1.0Mb
    help   1.1Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc    3.0Mb
    help   1.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    images   3.1Mb
    libs     1.3Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'coxKM'
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    data   4.8Mb
    libs   1.2Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File 'fastmatch/libs/x64/fastmatch.dll':
  Found non-API call to R: 'match5'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) FastPCS-package.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) FastPCS.Rd:104: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) Scent.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) Traffic.Rd:44: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
checkRd: (-1) Lemons.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) Lemons.Rd:5: Escaped LaTeX specials: \&
installed size is 15.8Mb
  sub-directories of 1Mb or more:
    data  15.7Mb
Found the following significant warnings:
  Rconnection.cc:282:52: warning: format '%p' expects argument of type 'void*', but argument 3 has type 'Rexp*' [-Wformat=]
See 'd:/Rcompile/CRANpkg/local/4.3/FastRWeb.Rcheck/00install.out' for details.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    Rcgi      3.0Mb
    cgi-bin   2.8Mb
.run: no visible binding for global variable 'init'
.run: no visible global function definition for 'init'
.run: no visible binding for global variable 'run'
Undefined global functions or variables:
  init run
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'NNLM'
Specified C++11: please drop specification unless essential
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
    libs   1.2Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    data   2.3Mb
    doc    3.9Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Unexported objects imported by ':::' calls:
  'fdapace:::GCVLwls1D1' 'fdapace:::GetSmoothedMeanCurve'
  'fdapace:::HandleNumericsAndNAN' 'fdapace:::interp2lin'
  See the note in ?`:::` about the use of this operator.
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    libs   7.9Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'xtable.fdt':
  'xtable.fdt' 'xtable.fdt.multiple' 'xtable.fdt_cat.multiple'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) morse.Rd:40: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:23: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) regMin.Rd:24: Escaped LaTeX specials: \#
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    New Stuff
'LazyData' is specified without a 'data' directory
checkRd: (-1) fermicatsR.Rd:31: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  fgsg.h:96:75: warning: passing argument 8 of 'dpotrs_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:202:48: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:347:48: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:460:48: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:516:75: warning: passing argument 8 of 'dpotrs_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:636:48: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:717:48: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:852:48: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:996:48: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
See 'd:/Rcompile/CRANpkg/local/4.3/FGSG.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    data      1.9Mb
    extdata   2.8Mb
    libs      1.2Mb
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'MicrobeDS'
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/fiery.Rcheck/00install.out' for details.
installed size is  9.6Mb
  sub-directories of 1Mb or more:
    R         4.3Mb
    doc       1.9Mb
    extdata   2.1Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate memory for pointer stack
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc   4.9Mb
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) bitspec.Rd:8: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
installed size is 13.7Mb
  sub-directories of 1Mb or more:
    libs  12.5Mb
Specified C++11: please drop specification unless essential
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data      1.4Mb
    extdata   3.8Mb
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    lib    3.0Mb
    libs   2.3Mb
'LazyData' is specified without a 'data' directory
Package required but not available: 'rayshader'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
checkRd: (-1) fitmixEM.Rd:51: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'fivethirtyeightdata'
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    data   3.8Mb
Package unavailable to check Rd xrefs: 'fivethirtyeightdata'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    doc    3.6Mb
    libs   1.6Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fk_regression.Rd:32: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    help   2.3Mb
    libs   1.3Mb
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) flashClust.Rd:92: Escaped LaTeX specials: \&
levelplot:
  function(x, data, ...)
levelplot.JPtest:
  function(JPobj, what, rotate, plot, ...)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
checkRd: (-1) cclust.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) randIndex.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) vacmot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) vacmot.Rd:28: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'FPCEnv'
installed size is 21.6Mb
  sub-directories of 1Mb or more:
    libs  20.5Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 10.6Mb
  sub-directories of 1Mb or more:
    doc    9.0Mb
    libs   1.0Mb
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    R   7.0Mb
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) pseudoOptim.Rd:27: Escaped LaTeX specials: \$
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'fMRItools-Ex.R' failed
The error occurred in:
Fatal error: couldn't allocate node stack

Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Loading this package had a fatal error status code 301
Fatal error: couldn't allocate node stack


A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    fonts   6.6Mb
Malformed Description field: should contain one or more complete sentences.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    fonts   6.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'doMC'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Previous versions (not tagged nor released)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   2.7Mb
    doc    1.6Mb
    libs   1.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'Rsocp', 'Rnlminb2', 'Rdonlp2'
Loading required package: timeDate
Loading required package: timeSeries
Loading required package: fBasics
Loading required package: fAssets
Error: package or namespace load failed for 'fPortfolio' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/quadprog/libs/x64/quadprog.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    R      1.2Mb
    help   2.2Mb
    libs   3.4Mb
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) MultiAsset.Rd:26: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    R   5.7Mb
checkRd: (-1) CatalogueAccessors.Rd:249: Escaped LaTeX specials: \^ \^
checkRd: (-1) FrF2.Rd:574: Escaped LaTeX specials: \^
checkRd: (-1) FrF2.Rd:629: Escaped LaTeX specials: \^ \^
checkRd: (-1) IAPlot.Rd:87: Escaped LaTeX specials: \$
checkRd: (-1) block.Rd:121: Escaped LaTeX specials: \^
checkRd: (-1) block.Rd:150: Escaped LaTeX specials: \^ \^
checkRd: (-1) blockpick.Rd:114: Escaped LaTeX specials: \^ \^
Packages suggested but not available for checking: 'dggrids', 'INLA'
installed size is 20.6Mb
  sub-directories of 1Mb or more:
    data   5.0Mb
    doc    1.7Mb
    libs  12.9Mb
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'foba', 'rrlda'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Loading this package had a fatal error status code 301
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Error in grepl(.valid_maintainer_field_regexp, val) : 
  invalid regular expression '^[[:space:]]*(.*<(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+>|ORPHANED)[[:space:]]*$', reason 'Out of memory'
Calls: <Anonymous> -> grepl
In addition: Warning message:
In grepl(.valid_maintainer_field_regexp, val) :
  TRE pattern compilation error 'Out of memory'
Execution halted
checkRd: (-1) mean.fts.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) median.fts.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) plot.fm.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) residuals.fm.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) sd.fts.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) var.fts.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) Spec_compare_localize_freq.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) Spec_compare_localize_freq.Rd:52: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Malformed Description field: should contain one or more complete sentences.
S3 methods shown with full name in documentation object 'plot.funData':
  'plot.funData'

S3 methods shown with full name in documentation object 'plot.irregFunData':
  'plot.irregFunData'

S3 methods shown with full name in documentation object 'plot.multiFunData':
  'plot.multiFunData'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Warning in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  :
  TRE pattern compilation error 'Out of memory'
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]', reason 'Out of memory'
Calls: <Anonymous> ... .find_calls_in_package_code -> list_files_with_type -> grep
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is 10.6Mb
  sub-directories of 1Mb or more:
    doc   9.3Mb
'LazyData' is specified without a 'data' directory
Found the following significant warnings:

  Warning: 'as(<dsyMatrix>, "dspMatrix")' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LGAclaims.Rd:30: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:34: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:35: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:36: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) GSE.Test.Main.Rd:23: Escaped LaTeX specials: \_
Error(s) in re-building vignettes:
--- re-building 'gapclosing.Rmd' using rmarkdown
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  unable to allocate bitmap
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  opening device failed
Quitting from lines 124-126 (gapclosing.Rmd) 
Error: processing vignette 'gapclosing.Rmd' failed with diagnostics:
unable to start png() device
--- failed re-building 'gapclosing.Rmd'

SUMMARY: processing the following file failed:
  'gapclosing.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
checkRd: (-1) meyer.Rd:11: Escaped LaTeX specials: \&
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    doc   7.6Mb
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpsxacEP\file314546287575c'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpsxacEP\file314546287575c'
CreateThread failed
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpsxacEP\file314546287575c'
Specified C++14: please drop specification unless essential
installed size is 46.1Mb
  sub-directories of 1Mb or more:
    doc   44.3Mb
    libs   1.2Mb
':::' call which should be '::': 'graphics:::grid'
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs      2.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) fitgbd.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) fitgld.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) gb.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) gbd.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) gld.Rd:36: Escaped LaTeX specials: \&
Package in Depends field not imported from: 'tools'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  'tools:::.Rd_get_argument_names' 'tools:::RdTags' 'tools:::fetchRdDB'
  See the note in ?`:::` about the use of this operator.
checkRd: (-1) estprops.Rd:40: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/gdalcubes.Rcheck/00install.out' for details.
Running examples in 'gdata-Ex.R' failed
The error most likely occurred in:

> ### Name: read.xls
> ### Title: Read Excel files
> ### Aliases: read.xls xls2csv xls2tab xls2tsv xls2sep
> ### Keywords: file
> 
> ### ** Examples
> 
> 
>    # iris.xls is included in the gregmisc package for use as an example
>    xlsfile <- file.path(path.package('gdata'),'xls','iris.xls')
>    xlsfile
[1] "D:/RCompile/CRANpkg/lib/4.3/gdata/xls/iris.xls"
> 
>    iris <- read.xls(xlsfile) # defaults to csv format
Error in findPerl(perl, verbose = verbose) : 
  perl executable not found. Use perl= argument to specify the correct path.
Calls: read.xls -> xls2sep -> findPerl
Error in file.exists(tfn) : invalid 'file' argument
Calls: read.xls -> file.exists
Execution halted
Specified C++11: please drop specification unless essential
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    extdata   3.0Mb
Running examples in 'gdm-Ex.R' failed
The error occurred in:
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'gdxrrw'
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
CreateThread failed
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpaUKdyO\file1a49c6ef73795'
Skipping checking math rendering: package 'V8' unavailable
Encountered the following conversion/validation errors:
CreateThread failed
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp6vHXhQ\file25f7c56764f8c'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    doc       1.3Mb
    extdata   3.2Mb
    libs      1.1Mb
checkRd: (-1) plot_summary.Rd:14: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'genBaRcode_GUI_Vignette.Rmd' using rmarkdown
--- finished re-building 'genBaRcode_GUI_Vignette.Rmd'

--- re-building 'genBaRcode_Vignette.Rmd' using rmarkdown
Quitting from lines 231-248 (genBaRcode_Vignette.Rmd) 
Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
cannot allocate vector of size 21 Kb
--- failed re-building 'genBaRcode_Vignette.Rmd'

SUMMARY: processing the following file failed:
  'genBaRcode_Vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'genderdata'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Error: unable to load shared object 'D:/RCompile/recent/R/library/parallel/libs/x64/parallel.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
16: inDL(x, as.logical(local), as.logical(now), ...)
15: dyn.load(file, DLLpath = DLLpath, ...)
14: library.dynam(lib, package, package.lib)
13: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
12: asNamespace(ns)
11: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
        .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
10: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
9: asNamespace(ns)
8: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
6: asNamespace(ns)
5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
     
Execution halted
Error in readRDS(mapfile) : error reading from connection
Calls: loadNamespace -> lazyLoad -> lazyLoadDBexec -> readRDS
Execution halted
Fatal error: couldn't allocate node stack
Error: package or namespace load failed for 'genekitr' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/Biostrings/libs/x64/Biostrings.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:"
Execution halted
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:
--- re-building 'generalCorr-vignette.pdf.asis' using asis
--- finished re-building 'generalCorr-vignette.pdf.asis'

--- re-building 'generalCorr-vignette2.pdf.asis' using asis
--- finished re-building 'generalCorr-vignette2.pdf.asis'

--- re-building 'generalCorr-vignette3.pdf.asis' using asis
--- finished re-building 'generalCorr-vignette3.pdf.asis'


--- re-building 'generalCorr-vignette5.pdf.asis' using asis
--- finished re-building 'generalCorr-vignette5.pdf.asis'

--- re-building 'generalCorr-vignette6.pdf.asis' using asis
--- finished re-building 'generalCorr-vignette6.pdf.asis'

SUMMARY: processing the following file failed:
  'generalCorr-vignette4.pdf.asis'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpekA4Ri\file2be0858012a28'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpekA4Ri\file2be0858012a28'
CreateThread failed
checkRd: (-1) SandP500.Rd:4: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Running examples in 'geno2proteo-Ex.R' failed
The error most likely occurred in:

> ### Name: generatingCDSaaFile
> ### Title: Generating a file containing the DNA and AA sequences of all the
> ###   protein coding regions (CDSs) in a genome
> ### Aliases: generatingCDSaaFile
> 
> ### ** Examples
> 
>     # the data folder in this package
>     dataFolder = system.file("extdata", package="geno2proteo") 
> 
>     geneticCodeFile_line = file.path(dataFolder, 
+                                     "geneticCode_standardTable_lines.txt")
>     gtfFile = file.path(dataFolder, 
+                 "Homo_sapiens.GRCh37.74_chromosome16_35Mlong.gtf.gz")
>     DNAfastaFile =  file.path(dataFolder, 
+             "Homo_sapiens.GRCh37.74.dna.chromosome.16.fa_theFirst3p5M.txt.gz")
>     
>     outputFolder = tempdir(); # using the current folder as output folder
>     # calling the function.
>     generatingCDSaaFile(geneticCodeFile_line=geneticCodeFile_line, 
+         gtfFile=gtfFile, DNAfastaFile=DNAfastaFile, outputFolder=outputFolder)
Datei nicht gefunden
Warning in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait,  :
  running command 'C:\Windows\system32\cmd.exe /c dir' had status 1
Out of memory!
Warning in system(command) :
  'CreateProcess' failed to run 'd:\rtools43\usr\bin\perl.exe "D:/RCompile/CRANpkg/lib/4.3/geno2proteo/exec/DNAseqTranslation_CDS.perl" "D:\temp\RtmpEF4his/Homo_sapiens.GRCh37.74_chromosome16_35Mlong.gtf.gz_CDS_transcript_DNAseq.txt" "D:/RCompile/CRANpkg/lib/4.3/geno2proteo/extdata/geneticCode_standardTable_lines.txt" "D:\temp\RtmpEF4his/Homo_sapiens.GRCh37.74_chromosome16_35Mlong.gtf.gz_AAseq.txt"'
Warning in file(file, "rt") :
  cannot open file 'D:\temp\RtmpEF4his/Homo_sapiens.GRCh37.74_chromosome16_35Mlong.gtf.gz_AAseq.txt': No such file or directory
Error in file(file, "rt") : cannot open the connection
Calls: generatingCDSaaFile -> read.table -> file
Execution halted
Running 'runTests.R' [33s]
Running the tests in 'tests/runTests.R' failed.
Complete output:
  > BiocGenerics:::testPackage("geno2proteo")
  Datei nicht gefunden
  Timing stopped at: 2.7 0.95 4.73
  Error in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait,  : 
    'CreateProcess' failed to run 'C:\Windows\system32\cmd.exe /c dir'
  In addition: Warning message:
  In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait,  :
    running command 'C:\Windows\system32\cmd.exe /c dir' had status 1
  Datei nicht gefunden
  
  
  RUNIT TEST PROTOCOL -- Sat Apr  8 17:35:43 2023 
  *********************************************** 
  Number of test functions: 6 
  Number of errors: 1 
  Number of failures: 0 
  
   
  1 Test Suite : 
  geno2proteo RUnit Tests - 6 test functions, 1 error, 0 failures
  ERROR in test_generatingCDSaaFile: Error in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait,  : 
    'CreateProcess' failed to run 'C:\Windows\system32\cmd.exe /c dir'
  
  Test files with failing tests
  
     test_functionsInGeno2proteo.R 
       test_generatingCDSaaFile 
  
  
  Error in BiocGenerics:::testPackage("geno2proteo") : 
    unit tests failed for package geno2proteo
  In addition: Warning message:
  In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait,  :
    running command 'C:\Windows\system32\cmd.exe /c dir' had status 1
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'geno2proteoIntroduction.Rnw' using Sweave
Datei nicht gefunden
Warning in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait,  :
  running command 'C:\Windows\system32\cmd.exe /c dir' had status 1
Out of memory!
Cannot open the file D:\temp\RtmpuIQd0w/Homo_sapiens.GRCh37.74_chromosome16_35Mlong.gtf.gz_CDS_transcript_DNAseq.txt
Warning in file(file, "rt") :
  cannot open file 'D:\temp\RtmpuIQd0w/Homo_sapiens.GRCh37.74_chromosome16_35Mlong.gtf.gz_AAseq.txt': No such file or directory

Error: processing vignette 'geno2proteoIntroduction.Rnw' failed with diagnostics:
 chunk 3 (label = example_generatingCDSaaFile) 
Error in file(file, "rt") : cannot open the connection

--- failed re-building 'geno2proteoIntroduction.Rnw'

SUMMARY: processing the following file failed:
  'geno2proteoIntroduction.Rnw'

Error: Vignette re-building failed.
Execution halted
Specified C++14: please drop specification unless essential
Running examples in 'GenomeAdmixR-Ex.R' failed
The error occurred in:

Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Running examples in 'genomicper-Ex.R' failed
The error occurred in:


R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "genomicper"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> options(pager = "console")
> library('genomicper')
Warning: replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'AnnotationDbi'
Error: package or namespace load failed for 'genomicper' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/Biostrings/libs/x64/Biostrings.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpiEJWnE\file2746822092067'
Running examples in 'GenoScan-Ex.R' failed
The error most likely occurred in:

> ### Name: GenoScan.VCF.chr
> ### Title: Scan a VCF file to study the association between an
> ###   quantitative/dichotomous outcome variable and a region or whole
> ###   chromosome by score type statistics allowing for multiple functional
> ###   annotation scores.
> ### Aliases: GenoScan.VCF.chr
> ### Keywords: VCF scan
> 
> ### ** Examples
> 
> 
> # load example vcf file from package "seqminer"
> vcf.filename = system.file("vcf/all.anno.filtered.extract.vcf.gz", package = "seqminer")
> 
> # simulated outcomes, covariates and inidividual id.
> Y<-as.matrix(rnorm(3,0,1))
> X<-as.matrix(rnorm(3,0,1))
> id<-c("NA12286", "NA12341", "NA12342")
> 
> # fit null model
> result.prelim<-GenoScan.prelim(Y,X=X,id=id,out_type="C",B=5000)
> 
> # scan the vcf file
> result<-GenoScan.VCF.chr(result.prelim,vcf.filename,chr=1,pos.min=196621007,pos.max=196716634)
[1] "0.000% finished. Time used: 0s. Scan 196621007-196821007"
1 region to be extracted.
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'x' in selecting a method for function 'as.matrix': cannot allocate vector of size 6.4 Mb
Calls: GenoScan.VCF.chr ... apply -> aperm -> aperm.default -> .handleSimpleError -> h
Execution halted
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpU7Kb4W\file5e006a4a22da'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpU7Kb4W\file5e006a4a22da'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
installed size is 13.6Mb
  sub-directories of 1Mb or more:
    libs  12.8Mb
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
Error(s) in re-building vignettes:
--- re-building 'geoAr_geofacet.Rmd' using rmarkdown
--- finished re-building 'geoAr_geofacet.Rmd'

--- re-building 'geoAr_leaflet.Rmd' using rmarkdown
SUMMARY: processing the following file failed:
  'geoAr_leaflet.Rmd'

Error: Vignette re-building failed.
Execution halted
Running massageExamples to create 'geoBayes-Ex.R' failed

 NONE
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Error(s) in re-building vignettes:
--- re-building 'intro_to_geobr.Rmd' using rmarkdown
Quitting from lines 89-102 (intro_to_geobr.Rmd) 
Error: processing vignette 'intro_to_geobr.Rmd' failed with diagnostics:
std::bad_alloc
--- failed re-building 'intro_to_geobr.Rmd'

SUMMARY: processing the following file failed:
  'intro_to_geobr.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpwnl7K3\filea7b039b94b7c'
Error: unable to load R code in package 'lifecycle'
Call sequence:
7: stop(gettextf("unable to load R code in package %s", sQuote(package)), 
       call. = FALSE, domain = NA)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    doc       1.8Mb
    extdata   3.0Mb
    libs      1.4Mb
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpKw7Q8m\file1c3d411a5298'
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [4s] OK
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  
  R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
  Copyright (C) 2023 The R Foundation for Statistical Computing
  Platform: x86_64-w64-mingw32/x64 (64-bit)
  
  R is free software and comes with ABSOLUTELY NO WARRANTY.
  You are welcome to redistribute it under certain conditions.
  Type 'license()' or 'licence()' for distribution details.
  
  R is a collaborative project with many contributors.
  Type 'contributors()' for more information and
  'citation()' on how to cite R or R packages in publications.
  
  Type 'demo()' for some demos, 'help()' for on-line help, or
  'help.start()' for an HTML browser interface to help.
  Type 'q()' to quit R.
  
  Mingw-w64 runtime failure:
    VirtualProtect failed with code 0x5af
Fatal error: couldn't allocate node stack
Specified C++11: please drop specification unless essential
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'geodrawr-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/sf/libs/x64/sf.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
10: inDL(x, as.logical(local), as.logical(now), ...)
9: dyn.load(file, DLLpath = DLLpath, ...)
8: library.dynam(lib, package, package.lib)
7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
6: asNamespace(ns)
5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Error loading dataset 'sg_planning_area_grid2': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
  
  Error loading dataset 'sg_regions_grid1': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
  
  Error loading dataset 'tw_counties_grid2': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
  
  Error loading dataset 'us_id_counties_grid1': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
  
  Error loading dataset 'us_il_chicago_community_areas_grid1': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
  
  Error loading dataset 'us_in_central_counties_grid1': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
  
  Error loading dataset 'us_or_counties_grid1': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
  
  Error loading dataset 'us_pa_counties_grid1': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
Fatal error: couldn't allocate node stack
Error in grepl(.valid_maintainer_field_regexp, val) : 
  invalid regular expression '^[[:space:]]*(.*<(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+>|ORPHANED)[[:space:]]*$', reason 'Out of memory'
Calls: <Anonymous> -> grepl
In addition: Warning message:
In grepl(.valid_maintainer_field_regexp, val) :
  TRE pattern compilation error 'Out of memory'
Execution halted
Running examples in 'geofi-Ex.R' failed
The error occurred in:


R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "geofi"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> options(pager = "console")
> library('geofi')
Error: package or namespace load failed for 'geofi' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/glue/libs/x64/glue.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
Specified C++11: please drop specification unless essential
Running examples in 'geoFKF-Ex.R' failed
The error most likely occurred in:

> ### Name: log_lik_rf
> ### Title: Maximum likelihood estimate for sigma^2, phi and rho.
> ### Aliases: log_lik_rf
> 
> ### ** Examples
> 
> data("datasetCanada")
> 
> m_data <- as.matrix(datasetCanada$m_data)
> m_coord <- as.matrix(datasetCanada$m_coord[, 1:2])
> 
> p <- ceiling(1 + log2(nrow(m_data)))
> m_coef <- sapply(seq_len(nrow(m_coord)), function(i) {
+     coef_fourier(m_data[, i], p)
+ })
> log_lik_rf(m_coef, m_coord)
Error: std::bad_alloc
Execution halted
Specified C++11: please drop specification unless essential
Running examples in 'geohashTools-Ex.R' failed
The error occurred in:

Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 301
Found the following possibly unsafe calls:
Fatal error: couldn't allocate node stack


Fatal error: couldn't allocate node stack
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Specified C++11: please drop specification unless essential
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/tools/libs/x64/tools.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack

All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack
Output for data("cosogeol", package = "geomapdata"):
  Error in load(zfile, envir = tmp_env) : empty (zero-byte) input file
  Calls: <Anonymous> ... suppressMessages -> withCallingHandlers -> <Anonymous> -> load
  In addition: Warning message:
  In readChar(con, 5L, useBytes = TRUE) : lzma decoder needed more memory
  Execution halted
Output for data("faults", package = "geomapdata"):
  Fatal error: couldn't allocate node stack
  
Output for data("fujitopo", package = "geomapdata"):
  Fatal error: couldn't allocate node stack
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
Package suggested but not available for checking: 'geomarocdata'
Error: cannot allocate vector of size 21 Kb
Execution halted
'LazyData' is specified without a 'data' directory
installed size is 14.6Mb
  sub-directories of 1Mb or more:
    R         9.6Mb
    extdata   2.5Mb
    help      2.4Mb
Found the following files with non-ASCII characters:
  Fatal error: couldn't allocate node stack
  
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate memory for pointer stack
Found the following files with non-ASCII characters:
  Fatal error: couldn't allocate node stack
  
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/Rcpp/libs/x64/Rcpp.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Running massageExamples to create 'GeoMongo-Ex.R' failed

 NONE
Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 253
Loading this package had a fatal error status code 1
Loading log:
Loading required package: geometa
Error in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc,  : 
  'geometa' is not a valid installed package
Calls: library -> .getRequiredPackages2 -> library
In addition: Warning message:
In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/CRANpkg/lib/4.3/geometa/Meta/package.rds', probable reason 'Not enough space'
Execution halted
Error: package or namespace load failed for 'geonetwork' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/rgdal/libs/x64/rgdal.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
During startup - Warning message:
package 'grDevices' in options("defaultPackages") was not found 
Error: package or namespace load failed for 'geonetwork' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/sf/libs/x64/sf.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error in readRDS(mapfile) : error reading from connection
Calls: loadNamespace -> lazyLoad -> lazyLoadDBexec -> readRDS
Execution halted
Lost warning messages
Error: no more error handlers available (recursive errors?); invoking 'abort' restart
Execution halted
Loading this package had a fatal error status code 301
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/GeoRange.Rcheck/00install.out' for details.
Error in if (grepl("RD[ABX][1-9]", magic, useBytes = TRUE)) { : 
    argument is of length zero
  Calls: <Anonymous> -> checkRdaFiles
  In addition: Warning message:
  In readChar(con, 5L, useBytes = TRUE) : lzma decoder needed more memory
  Execution halted
Error in readRDS(mapfile) : error reading from connection
Execution halted
Loading this package had a fatal error status code 301
Error in doWithOneRestart(return(expr), restart) : 
  promise already under evaluation: recursive default argument reference or earlier problems?
Calls: <Anonymous> ... .is_S3_generic -> suppressMessages -> withCallingHandlers -> get
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Error in .expand_R_libs_env_var(Sys.getenv("R_LIBS_SITE")) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: Sys.setenv -> .expand_R_libs_env_var
In addition: Warning message:
In .expand_R_libs_env_var(Sys.getenv("R_LIBS_SITE")) :
  internal error -4 in R_decompress1
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Loading this package had a fatal error status code 5
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fields/libs/x64/fields.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
7: inDL(x, as.logical(local), as.logical(now), ...)
6: dyn.load(file, DLLpath = DLLpath, ...)
5: library.dynam(lib, package, package.lib)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Specified C++11: please drop specification unless essential
Found the following possibly unsafe calls:
Fatal error: couldn't allocate node stack
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
!pdfTeX error: pdflatex: zlib: deflateInit() failed (error code -4)
 ==> Fatal error occurred, no output PDF file produced!
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpYR5oNR\file16a206c465e3e'
Malformed Description field: should contain one or more complete sentences.
Error in readRDS(nsInfoFilePath) : error reading from connection
Calls: loadNamespace -> readRDS
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Output for data("fr_geo_deg", package = "geotools"):
  During startup - Warning messages:
  1: In (function (n)  : internal error -4 in R_decompress1
  2: package "methods" in options("defaultPackages") was not found 
  3: package 'datasets' in options("defaultPackages") was not found
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Loading this package had a fatal error status code 5
Loading this package had a fatal error status code 301
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
Running examples in 'geoviz-Ex.R' failed
The error most likely occurred in:

> ### Name: get_slippy_map
> ### Title: Obtains and merges map tiles from various sources using the
> ###   'slippymath' package
> ### Aliases: get_slippy_map
> 
> ### ** Examples
> 
> map <- get_slippy_map(example_raster(),
+   image_source = "stamen",
+   image_type = "watercolor",
+   max_tiles = 5)
Warning: [rast] unknown extent
Warning in `$.crs`(attr(bbox, "crs"), "proj4string") :
  CRS uses proj4string, which is deprecated.
Warning: [rast] unknown extent
Warning in `$.crs`(attr(bbox, "crs"), "proj4string") :
  CRS uses proj4string, which is deprecated.
Warning: [rast] unknown extent
Warning in `$.crs`(attr(bbox, "crs"), "proj4string") :
  CRS uses proj4string, which is deprecated.
Warning: [rast] unknown extent
Warning in `$.crs`(attr(bbox, "crs"), "proj4string") :
  CRS uses proj4string, which is deprecated.
Warning: [rast] unknown extent
Error: std::bad_alloc
Execution halted
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate memory for pointer stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error(s) in re-building vignettes:
--- re-building 'GerminaQuant.Rmd' using rmarkdown
Warning in dev.off(dv) : processing of the plot ran out of memory


SUMMARY: processing the following files failed:
  'GerminaQuant.Rmd' 'GerminaR.Rmd' 'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Loading this package had a fatal error status code 301
Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Specified C++11: please drop specification unless essential
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
8: inDL(x, as.logical(local), as.logical(now), ...)
7: dyn.load(file, DLLpath = DLLpath, ...)
6: library.dynam(lib, package, package.lib)
5: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
4: namespaceImport(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), 
       versionCheck = vI[[j]]), from = package, except = i$except)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate memory for pointer stack
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpOU5zck\file17c4858953f9c'
Error in readRDS(mapfile) : error reading from connection
During startup - Warning message:
package "methods" in options("defaultPackages") was not found 

It looks like this package has a loading problem: see the messages for
details.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpm8SPE9\file233bc52b1637f'
Fatal error: couldn't allocate memory for pointer stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate memory for pointer stack
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpE7eErj\file2607842a06dfc'
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack

All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error in doWithOneRestart(return(expr), restart) : 
  promise already under evaluation: recursive default argument reference or earlier problems?
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly
Execution halted
Error: package or namespace load failed for 'gexp':
 cannot allocate vector of size 1.9 Mb
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain = NA)
       else stop(msg, call. = FALSE, domain = NA)
   })
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
checkRd: (-1) estGF.Rd:106: Escaped LaTeX specials: \&
checkRd: (-1) estGF.Rd:107: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack
Specified C++11: please drop specification unless essential
Error: package or namespace load failed for 'gfilmm' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/Rcpp/libs/x64/Rcpp.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpmkWUlN\filea9d868d06b40'
Specified C++11: please drop specification unless essential
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Running examples in 'gfilogisreg-Ex.R' failed
The error occurred in:

Fatal error: couldn't allocate node stack
Warning in gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/tools/Meta/nsInfo.rds', probable reason 'Not enough space'
Error in gzfile(file, "rb") : cannot open the connection
Calls: loadNamespace -> readRDS -> gzfile
Execution halted
See sections 'The INDEX file' and 'Package subdirectories' in the
'Writing R Extensions' manual.
Loading this package had a fatal error status code 301
Error: cannot allocate vector of size 1.9 Mb
Call sequence:
9: (function (n) 
   {
       if (existsInFrame(n, envenv)) 
           envenv[[n]]
       else {
           e <- mkenv()
           envenv[[n]] <- e
           key <- env[[n]]
           ekey <- if (is.list(key)) 
               key$eagerKey
           else key
           data <- lazyLoadDBfetch(ekey, datafile, compressed, envhook)
           parent.env(e) <- if (!is.null(data$enclos)) 
               data$enclos
           else emptyenv()
           list2env(data$bindings, e)
           if (!is.null(data$attributes)) 
               attributes(e) <- data$attributes
           if (!is.null(data$isS4) && data$isS4) 
               .Internal(setS4Object(e, TRUE, TRUE))
           if (is.list(key)) {
               expr <- quote(lazyLoadDBfetch(KEY, datafile, compressed, 
                   envhook))
               .Internal(makeLazy(names(key$lazyKeys), key$lazyKeys, 
                   expr, parent.env(environment()), e))
    
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Loading this package had a fatal error status code 1
Loading log:
Error in .OptRequireMethods() : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
In addition: Warning messages:
1: In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/methods/Meta/nsInfo.rds', probable reason 'Not enough space'
2: In paste(" in", deparse(cc)[1L]) : internal error -4 in R_decompress1
3: In .OptRequireMethods() : internal error -4 in R_decompress1
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
9: inDL(x, as.logical(local), as.logical(now), ...)
8: dyn.load(file, DLLpath = DLLpath, ...)
7: library.dynam(lib, package, package.lib)
6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Running examples in 'ggallin-Ex.R' failed
The error occurred in:
Loading required package: ggplot2
Error: package or namespace load failed for 'ggplot2' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Error: package 'ggplot2' could not be loaded
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
geom_dumbbell.Rd:70: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/utf8/libs/x64/utf8.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

prepare_Rd: restarting interrupted promise evaluation
problem found in 'geom_dumbbell.Rd'
'LazyData' is specified without a 'data' directory
Running examples in 'ggalt-Ex.R' failed
The error occurred in:
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack

All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running massageExamples to create 'gganimate-Ex.R' failed

 NONE
Error(s) in re-building vignettes:
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Fatal error: couldn't allocate node stack


A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Found the following files with non-ASCII characters:
  Fatal error: couldn't allocate node stack
  
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
Loading this package had a fatal error status code 301
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    doc       3.0Mb
    extdata   1.6Mb
    libs      1.1Mb
Fatal error: couldn't allocate node stack


Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous>
Execution halted
Running massageExamples to create 'ggbreak-Ex.R' failed

 NONE
Fatal error: couldn't allocate node stack

See sections 'The INDEX file' and 'Package subdirectories' in the
'Writing R Extensions' manual.
Error in readRDS(mapfile) : error reading from connection
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/dplyr/libs/x64/dplyr.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: inDL(x, as.logical(local), as.logical(now), ...)
5: dyn.load(file, DLLpath = DLLpath, ...)
4: library.dynam(lib, package, package.lib)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Running examples in 'ggBubbles-Ex.R' failed
The error occurred in:
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Loading this package had a fatal error status code 1033
Loading log:
Loading required package: ggplot2
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
During startup - Warning message:
package "methods" in options("defaultPackages") was not found 
Error: package or namespace load failed for 'ggChernoff' in length(sig):
 'rho' must be an environment not NULL: detected in C-level eval
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
Found the following possibly unsafe calls:
Fatal error: couldn't allocate memory for pointer stack
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    doc       5.2Mb
    extdata   1.2Mb
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for 'ggdag' in gzfile(file, "rb"):
 cannot open the connection
In addition: Warning message:
In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/CRANpkg/lib/4.3/magrittr/Meta/features.rds', probable reason 'Not enough space'
Execution halted
Fatal error: couldn't allocate node stack

The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Error: package or namespace load failed for 'ggdark' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), doma
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'ggdark-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Fatal error: couldn't allocate memory for pointer stack
Error: cannot allocate vector of size 1.3 Mb
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Loading this package had a fatal error status code 301
Loading this package had a fatal error status code 1033
Loading log:
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Specified C++11: please drop specification unless essential
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for 'ggdmc' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
Error in readRDS(mapfile) : error reading from connection
Error: unable to load R code in package 'compiler'
Execution halted
Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 301
Error in sys.source(codeFile, env, keep.source = keep.source, keep.parse.data = keep.parse.data) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
In addition: Warning message:
In sys.source(codeFile, env, keep.source = keep.source, keep.parse.data = keep.parse.data) :
  internal error -4 in R_decompress1
Error: unable to load R code in package 'compiler'
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Warning in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  :
  TRE pattern compilation error 'Out of memory'
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]', reason 'Out of memory'
Calls: <Anonymous> ... .find_calls_in_package_code -> list_files_with_type -> grep
Execution halted

Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Error in is.factor(x) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: options -> grep -> is.factor
In addition: Warning message:
In is.factor(x) : internal error -4 in R_decompress1
Execution halted
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error in readRDS(mapfile) : error reading from connection
Error: package 'RSDA' could not be loaded
Execution halted
Loading required package: ggplot2
Loading required package: tidyverse
── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
✔ dplyr     1.1.1     ✔ readr     2.1.4
✔ forcats   1.0.0     ✔ stringr   1.5.0
✔ lubridate 1.9.2     ✔ tibble    3.2.1
✔ purrr     1.0.1     ✔ tidyr     1.3.0
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag()    masks stats::lag()
ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
Loading required package: RSDA
Error: package or namespace load failed for 'RSDA' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/V8/libs/x64/V8.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Error: package 'RSDA' could not be loaded
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Running examples in 'ggESDA-Ex.R' failed
The error most likely occurred in:

> ### Name: Cardiological
> ### Title: Cardiological data example
> ### Aliases: Cardiological
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(Cardiological)
> ggInterval_index(Cardiological, aes(x = Syst))
Error in get(x, envir = ns, inherits = FALSE) : 
  object 'tbl_subset_col' not found
Calls: ggInterval_index ... as.data.frame -> [ -> [.symbolic_tbl -> getFromNamespace -> get
Execution halted
Error(s) in re-building vignettes:
--- re-building 'ggESDA.Rmd' using rmarkdown
Quitting from lines 47-57 (ggESDA.Rmd) 
Error: processing vignette 'ggESDA.Rmd' failed with diagnostics:
object 'tbl_subset_col' not found
--- failed re-building 'ggESDA.Rmd'

SUMMARY: processing the following file failed:
  'ggESDA.Rmd'

Error: Vignette re-building failed.
Execution halted
Error: package 'ggplot2' could not be loaded
In addition: Warning message:
In .getClassesFromCache(Class) : restarting interrupted promise evaluation
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate memory for pointer stack
Error: package or namespace load failed for 'ggExtra' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/httpuv/libs/x64/httpuv.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
In addition: Warning message:
In registerS3methods(nsInfo$S3methods, package, env) :
  internal error -4 in R_decompress1
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/httpuv/libs/x64/httpuv.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: suppressMessages ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate memory for pointer stack

See sections 'The INDEX file' and 'Package subdirectories' in the
'Writing R Extensions' manual.
Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 301
Loading required package: ggplot2
Error: package or namespace load failed for 'ggplot2' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Error: package 'ggplot2' could not be loaded
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error: cannot allocate vector of size 1.3 Mb
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack

See sections 'The INDEX file' and 'Package subdirectories' in the
'Writing R Extensions' manual.
Loading this package had a fatal error status code 1033
Loading log:
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
Error: object '#HAS_DUPLICATE_CLASS_NAMES' not found
Call sequence:
19: get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable)
18: .duplicateClassesExist()
17: .newOrMultipleMethod(obj, what, table)
16: .mergeMethodsTable(generic, mtable, tt, attach)
15: .updateMethodsInTable(fdef, where, attach)
14: methods::cacheMetaData(ns, TRUE, ns)
13: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
12: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
        versionCheck = vI[[i]]), from = package)
11: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
10: asNamespace(ns)
9: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
8: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
6: loadNamespace(i, c(lib.loc, .libPaths()), versionC
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Error: there is no package called 'rlang'
Call sequence:
13: doWithOneRestart(return(expr), restart)
12: withOneRestart(expr, restarts[[1L]])
11: withRestarts(stop(cond), retry_loadNamespace = function() NULL)
10: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
9: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
8: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: 
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Error in invokeRestart("grmbl", e, sys.calls()) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'Facets.Rmd' using rmarkdown
--- finished re-building 'Facets.Rmd'

--- re-building 'Miscellaneous.Rmd' using rmarkdown
Error: processing vignette 'Miscellaneous.Rmd' failed with diagnostics:
'CreateProcess' failed to run 'C:\PROGRA~1\Pandoc\pandoc.exe --version'
--- failed re-building 'Miscellaneous.Rmd'



--- re-building 'ggh4x.Rmd' using rmarkdown
Warning in gzfile(file, "rb") :
  cannot open compressed file 'D:/temp/RtmpMhFGIZ/RLIBS_24a14ca37d9a/rmarkdown/Meta/package.rds', probable reason 'Not enough space'
Error: processing vignette 'ggh4x.Rmd' failed with diagnostics:
there is no package called 'rmarkdown'
--- failed re-building 'ggh4x.Rmd'

SUMMARY: processing the following files failed:
  'Miscellaneous.Rmd' 'PositionGuides.Rmd' 'Statistics.Rmd' 'ggh4x.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Loading required package: ggplot2
Error: package or namespace load failed for 'ggimage' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/jsonlite/libs/x64/jsonlite.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for 'gginference' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/magrittr/libs/x64/magrittr.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error in eval(quote({ : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: local -> eval.parent -> eval -> eval -> eval -> eval
In addition: Warning message:
In eval(quote({ : internal error -4 in R_decompress1
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: cannot allocate vector of size 202 Kb
Execution halted
Loading this package had a fatal error status code 301
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    doc   5.7Mb
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: .onLoad failed in loadNamespace() for 'ggplot2', details:
  call: theme(line = element_line(colour = "black", linewidth = base_line_size, 
  error: lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/ggplot2/R/ggplot2.rdb' is corrupt
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: unable to load R code in package 'methods'
Call sequence:
5: stop(gettextf("unable to load R code in package %s", sQuote(package)), 
       call. = FALSE, domain = NA)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [1s] OK
Fatal error: couldn't allocate memory for pointer stack


A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ggplot2
Error: package or namespace load failed for 'gglm' in readRDS(pkgInfoFP):
 error reading from connection
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpslxBhL\file22f90121d18fd'
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Specified C++11: please drop specification unless essential
checkRd: (-1) boot_eip.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) constrained.Rd:93: Escaped LaTeX specials: \&
checkRd: (-1) constrained.Rd:37: Escaped LaTeX specials: \&
':::' call which should be '::': 'scales:::censor'
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: 'productplots:::bound'
  See the note in ?`:::` about the use of this operator.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Incorrect (un)loading of package shared object.
Error in .signalSimpleWarning("internal error -4 in R_decompress1", base::quote(.signalSimpleWarning("TRE pattern compilation error 'Out of memory'",  : 
  promise already under evaluation: recursive default argument reference or earlier problems?
Calls: <Anonymous> ... .find_calls_in_package_code -> list_files_with_type -> grep
Execution halted
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [17s] NOTE
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ggOceanMapsData'
Error: package 'libcoin' could not be loaded
Call sequence:
5: stop(gettextf("package %s could not be loaded", sQuote(pkg)), 
       call. = FALSE, domain = NA)
4: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
3: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc, 
       quietly = quietly)
2: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    R     1.3Mb
    doc   1.9Mb
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    History
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Error(s) in re-building vignettes:
--- re-building 'model-based-annotations.Rmd' using rmarkdown
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  unable to allocate bitmap
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  opening device failed
Quitting from lines 345-350 (model-based-annotations.Rmd) 
Error: processing vignette 'model-based-annotations.Rmd' failed with diagnostics:
unable to start png() device
--- failed re-building 'model-based-annotations.Rmd'

SUMMARY: processing the following file failed:
  'model-based-annotations.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'lixoftConnectors'
installed size is  8.8Mb
  sub-directories of 1Mb or more:
    doc        1.1Mb
    help       2.3Mb
    testdata   4.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'ggpp-Ex.R' failed
The error occurred in:
Running examples in 'ggpubr-Ex.R' failed
The error most likely occurred in:

> ### Name: ggtext
> ### Title: Text
> ### Aliases: ggtext
> 
> ### ** Examples
> 
> # Load data
> data("mtcars")
> df <- mtcars
Warning: internal error 5 in R_decompress3
Error: lazy-load database 'D:\RCompile\recent\R\library\datasets/data/Rdata.rdb' is corrupt
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Fatal error: couldn't allocate node stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Loading this package had a fatal error status code 253
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Specified C++11: please drop specification unless essential
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    doc    3.5Mb
    libs   1.1Mb
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    extdata   9.1Mb
Error(s) in re-building vignettes:
--- re-building 'gallery.Rmd' using rmarkdown
--- finished re-building 'gallery.Rmd'

--- re-building 'introduction.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'introduction.Rmd'

SUMMARY: processing the following file failed:
  'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpgj4iDn\file7e0415bc70dd'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
Error(s) in re-building vignettes:
--- re-building 'ggsci-faq.Rmd' using rmarkdown
--- finished re-building 'ggsci-faq.Rmd'

--- re-building 'ggsci.Rmd' using rmarkdown
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(before, options, envir, "pngquant", function(x) { :
  cannot find pngquant; please install and put it in PATH
Quitting from lines 274-277 (ggsci.Rmd) 
Error: processing vignette 'ggsci.Rmd' failed with diagnostics:
Memory allocation error. You are likely trying to create too large an image
--- failed re-building 'ggsci.Rmd'

SUMMARY: processing the following file failed:
  'ggsci.Rmd'

Error: Vignette re-building failed.
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpuifo3O\file10cd8571d242d'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
Error: package 'ggplot2' could not be loaded
Call sequence:
3: stop(gettextf("package %s could not be loaded", sQuote(pkg)), 
       call. = FALSE, domain = NA)
2: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    * Changes all data options to .data to decrease possibility of column naming overlap
Running examples in 'ggsn-Ex.R' failed
The error most likely occurred in:

> ### Name: scalebar
> ### Title: scalebar
> ### Aliases: scalebar
> 
> ### ** Examples
> 
> ## Not run: 
> ##D library(sf)
> ##D data(domestic_violence)
> ##D 
> ##D # Map in geographic coordinates
> ##D ggplot(domestic_violence, aes(fill = Scaled)) +
> ##D     geom_sf() +
> ##D     scalebar(domestic_violence, dist = 4, dist_unit = "km",
> ##D              transform = TRUE, model = "WGS84") +
> ##D     blank() +
> ##D     scale_fill_continuous(low = "#fff7ec", high = "#7F0000")
> ##D 
> ##D # Map in projected coordinates
> ##D domestic_violence2 <- st_transform(domestic_violence, 31983)
> ##D ggplot(domestic_violence2, aes(fill = Scaled)) +
> ##D     geom_sf() +
> ##D     scalebar(domestic_violence2, dist = 4, dist_unit = "km",
> ##D              transform = FALSE, model = "WGS84") +
> ##D     blank() +
> ##D     scale_fill_continuous(low = "#fff7ec", high = "#7F0000")
> ## End(Not run)
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  4.17 1.84 8.17 NA NA 
> grDevices::dev.off()
Error in grDevices::dev.off() : 
  'R_Calloc' could not allocate memory (2520156 of 1 bytes)
Execution halted
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpkx7H6R\file92c047ed7082'
Error: unable to load R code in package 'colorspace'
Call sequence:
11: stop(gettextf("unable to load R code in package %s", sQuote(package)), 
        call. = FALSE, domain = NA)
10: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
9: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
8: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
7: asNamespace(ns)
6: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc
Execution halted
Error(s) in re-building vignettes:
--- re-building 'userguide-0-r4p-introduction.Rmd' using rmarkdown
Warning in grDevices::dev.off() :
  processing of the plot ran out of memory
Warning in system(command) :
  'CreateProcess' failed to run 'C:\PROGRA~1\Pandoc\pandoc.exe +RTS -K512m -RTS userguide-0-r4p-introduction.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc1e2f8ae766.html --lua-filter "D:\RCompile\CRANpkg\lib\4.3\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.3\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --section-divs --table-of-contents --toc-depth 3 --template "D:\RCompile\CRANpkg\lib\4.3\rmarkdown\rmd
Error: processing vignette 'userguide-0-r4p-introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 127
--- failed re-building 'userguide-0-r4p-introduction.Rmd'

--- re-building 'userguide1-grammar.Rmd' using rmarkdown
--- finished re-building 'userguide1-grammar.Rmd'

--- re-building 'userguide2-autoplot-methods.Rmd' using rmarkdown
--- finished re-building 'userguide2-autoplot-methods.Rmd'

--- re-building 'userguide3-data-manip.Rmd' using rmarkdown
--- finished re-building 'userguide3-data-manip.Rmd'

SUMMARY: processing the following file failed:
  'userguide-0-r4p-introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp0Alkg7\file31a1c75fb1d17'
Fatal error: couldn't allocate node stack

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
During startup - Warning messages:
1: In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/grDevices/Meta/package.rds', probable reason 'Not enough space'
2: package 'grDevices' in options("defaultPackages") was not found 
3: package 'graphics' in options("defaultPackages") was not found 
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error: cannot allocate vector of size 202 Kb
Execution halted
theme_elements.Rd:21: the condition has length > 1
problem found in 'theme_elements.Rd'
Error: package or namespace load failed for 'ggThemeAssist' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/httpuv/libs/x64/httpuv.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Error in gsub("([\\])", "\\\\\\1", expansion) : 
  invalid regular expression '([\])', reason 'Out of memory'
Calls: Sys.setenv ... .expand_R_libs_env_var -> expand -> sprintf -> gsub
In addition: Warning message:
In gsub("([\\])", "\\\\\\1", expansion) :
  TRE pattern compilation error 'Out of memory'
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
During startup - Warning messages:
1: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  internal error -4 in R_decompress1
2: package 'utils' in options("defaultPackages") was not found 
3: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  restarting interrupted promise evaluation
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Win CRAN check results - R Windows
Loading required package: ggplot2
Error: package or namespace load failed for 'ggplot2' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Error: package 'ggplot2' could not be loaded
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
8: inDL(x, as.logical(local), as.logical(now), ...)
7: dyn.load(file, DLLpath = DLLpath, ...)
6: library.dynam(lib, package, package.lib)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running massageExamples to create 'ggtrendline-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Error: package or namespace load failed for 'ggupset' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), dom
Execution halted
installed size is 10.1Mb
  sub-directories of 1Mb or more:
    doc   9.1Mb
Loading this package had a fatal error status code 301
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpGgf3kx\file1e9f0376e3c69'
'R_Calloc' could not allocate memory (6494 of 1 bytes)
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpGgf3kx\file1e9f0376e3c69'
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/httpuv/libs/x64/httpuv.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
9: inDL(x, as.logical(local), as.logical(now), ...)
8: dyn.load(file, DLLpath = DLLpath, ...)
7: library.dynam(lib, package, package.lib)
6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Loading required package: ggplot2
Error: package or namespace load failed for 'ggvoronoi' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/terra/libs/x64/terra.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Fatal error: couldn't allocate node stack
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'ggx-Ex.R' failed

 NONE
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Problems with news in 'NEWS.md':
No news entries found.
Fatal error: couldn't allocate node stack


It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack


During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found
Fatal error: couldn't allocate memory for pointer stack
'LazyData' is specified without a 'data' directory
Error: package or namespace load failed for 'ghypernet' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'lifecycle'
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain = NA)
       else stop(msg, call. = FALSE, domain = NA)
   })
1: library(package, lib.loc = lib.loc, charac
Execution halted
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  > test_check("giedata")
  Loading required package: giedata
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 15 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (2)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-datadownloads.R:131:3'): check that get_gielisting outputs a list without specifying any parameters ──
  Error in `yaml::yaml.load(str)`: Memory error: Not enough memory for parsing
  Backtrace:
       ▆
    1. └─vcr::use_cassette(...) at test-datadownloads.R:131:2
    2.   └─vcr::insert_cassette(...)
    3.     └─Cassette$new(...)
    4.       └─vcr (local) initialize(...)
    5.         └─self$http_interactions()
    6.           ├─HTTPInteractionList$new(...)
    7.           │ └─vcr (local) initialize(...)
    8.           └─self$previously_recorded_interactions()
    9.             ├─vcr:::compact(...)
   10.             │ └─base::Filter(Negate(is.null), x)
   11.             │   ├─base::unlist(lapply(x, f))
   12.             │   └─base::lapply(x, f)
   13.             ├─base::lapply(...)
   14.             └─self$deserialized_hash()
   15.               └─self$serializer$deserialize(self)
   16.                 └─vcr:::yaml_load_desecret(self$path)
   17.                   └─yaml::yaml.load(str)
  
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 15 ]
  Error: Test failures
  Execution halted
Specified C++11: please drop specification unless essential
Error in file.copy(files, cpdir) : could not allocate copy buffer
  Calls: <Anonymous> -> file.copy
  Execution halted
Running examples in 'gifski-Ex.R' failed
The error occurred in:


R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "gifski"
> source(file.path(R.home("share"), "R", "examples-header.R"))
Error in grDevices::pdf(paste(pkgname, "-Ex.pdf", sep = ""), encoding = "ISOLatin1") : 
  failed to load default encoding
Calls: source -> withVisible -> eval -> eval -> <Anonymous>
In addition: Warning message:
In grDevices::pdf(paste(pkgname, "-Ex.pdf", sep = ""), encoding = "ISOLatin1") :
  failed to allocate encoding info
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc    3.3Mb
    help   2.5Mb
Warning in FUN(X[[i]], ...) : internal error -4 in R_decompress1
Error in FUN(X[[i]], ...) : 
  lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/giftwrap/help/giftwrap.rdb' is corrupt
Calls: <Anonymous> ... fetchRdDB -> lazyLoadDBexec -> fun -> lapply -> FUN
Execution halted
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'giftwrap-Ex.R' failed

 NONE
Error in readRDS(mapfile) : error reading from connection
Error: package or namespace load failed for 'GillespieSSA2':
 unable to load R code in package 'GillespieSSA2'
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Error: .onLoad failed in loadNamespace() for 'rlang', details:
  call: is_installed(ns)
  error: lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/rlang/R/rlang.rdb' is corrupt
Call sequence:
8: stop(gettextf("%s failed in %s() for '%s', details:\n  call: %s\n  error: %s", 
       hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], 
       conditionMessage(res)), call. = FALSE, domain = NA)
7: runHook(".onLoad", env, package.lib, package)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
'LazyData' is specified without a 'data' directory
Warning in read.table(file = file, header = header, sep = sep, quote = quote,  :
  internal error -4 in R_decompress1
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(giscoR)
  > 
  > test_check("giscoR")
  Starting 2 test processes
  [ FAIL 1 | WARN 0 | SKIP 17 | PASS 84 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (17)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-gisco_get_countries.R:35:3'): Countries offline ────────────────
  Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/proxy/libs/x64/proxy.dll':
    LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
  
  Backtrace:
       ▆
    1. ├─testthat::expect_true(sf::st_is_longlat(gisco_get_countries())) at test-gisco_get_countries.R:35:2
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. └─base::loadNamespace(x)
    5.   ├─base::namespaceImportFrom(...)
    6.   │ └─base::asNamespace(ns)
    7.   └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
    8.     ├─base::namespaceImportFrom(...)
    9.     │ └─base::asNamespace(ns)
   10.     └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   11.       ├─base::namespaceImportFrom(...)
   12.       │ └─base::asNamespace(ns)
   13.       └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   14.         └─base::library.dynam(lib, package, package.lib)
   15.           └─base::dyn.load(file, DLLpath = DLLpath, ...)
   16.             └─base (local) inDL(x, as.logical(local), as.logical(now), ...)
  
  [ FAIL 1 | WARN 0 | SKIP 17 | PASS 84 ]
  Error: Test failures
  Execution halted
Fatal error: couldn't allocate memory for pointer stack
Running examples in 'gitdown-Ex.R' failed
The error most likely occurred in:

> ### Name: create_vignette_last_modif
> ### Title: Creates and updates a vignette in the 'vignette/' directory of a
> ###   package with last modification time of tracked files
> ### Aliases: create_vignette_last_modif update_vignette_last_modif
> 
> ### ** Examples
> 
> 
> # Creates vignette
> repo <- fake_repo(as.package = TRUE)
> if (rmarkdown::pandoc_available("2.0.0")) {
+   create_vignette_last_modif(repo, path = "R")
+ }
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Warning in system(paste(shQuote(path), "--version"), intern = TRUE) :
  running command '"C:/PROGRA~1/Pandoc/pandoc.exe" --version' had status 251
Error in strsplit(info, "\n")[[1]] : subscript out of bounds
Calls: <Anonymous> -> find_pandoc -> lapply -> FUN -> get_pandoc_version
Execution halted
Error: package or namespace load failed for 'gitgadget' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fansi/libs/x64/fansi.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), d
Execution halted
Running examples in 'gitlabr-Ex.R' failed
The error occurred in:


R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "gitlabr"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> options(pager = "console")
> library('gitlabr')
Error: package or namespace load failed for 'gitlabr' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
checkRd: (-1) randPIT.Rd:52: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'doMC'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'glinvci-Ex.R' failed
Error in readRDS(nsInfoFilePath) : error reading from connection
Calls: loadNamespace -> readRDS
Execution halted
 NONE
installed size is 16.6Mb
  sub-directories of 1Mb or more:
    doc    1.4Mb
    libs  14.3Mb
checkRd: (-1) glmc.Rd:232: Escaped LaTeX specials: \&
checkRd: (-1) glmc.Rd:241: Escaped LaTeX specials: \&
checkRd: (-1) glmc.control.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) glmc.control.Rd:31: Escaped LaTeX specials: \$
checkRd: (-1) glmc.summaries.Rd:79: Escaped LaTeX specials: \&
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error: lazy-load database 'D:/RCompile/recent/R/library/tools/R/tools.rdb' is corrupt
In addition: Warning message:
internal error -4 in R_decompress1 
Execution halted
Loading this package had a fatal error status code 301
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    doc             1.3Mb
    libs            4.3Mb
    test_data       2.2Mb
    vignette_data   1.1Mb
Fatal error: couldn't allocate node stack


It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
checkRd: (-1) coef.glmulti.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) consensus.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) getfit.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-class.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti.Rd:99: Escaped LaTeX specials: \&
checkRd: (-1) summary.glmulti.Rd:72: Escaped LaTeX specials: \&
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) replace_in_file.Rd:40: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) barleyHeights.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) barleyHeights.Rd:22: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/GNRS.Rcheck/00install.out' for details.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: actuar

Attaching package: 'actuar'

The following objects are masked from 'package:stats':

    sd, var

The following object is masked from 'package:grDevices':

    cm

Error: package or namespace load failed for 'GofCens' in find.package(package, lib.loc, verbose = verbose):
 there is no package called 'rlang'
Execution halted
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) BVDWSTOXX.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:16: Escaped LaTeX specials: \& \&
checkRd: (-1) BVDWSTOXX.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:37: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Found the following files with non-ASCII characters:
  Error in sealNamespace(ns) : 
    lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
  Calls: getNamespace -> loadNamespace -> sealNamespace
  In addition: Warning message:
  In sealNamespace(ns) : internal error -4 in R_decompress1
  Execution halted
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
.access_result:
  function(res, accessor)
.access_result.character:
  function(js, accessor)

.access_result:
  function(res, accessor)
.access_result.list:
  function(lst, accessor)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    R   6.2Mb
Error(s) in re-building vignettes:
--- re-building 'GOxploreR.Rmd' using rmarkdown
Quitting from lines 220-226 (GOxploreR.Rmd) 
Error: processing vignette 'GOxploreR.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'head': lazy-load database 'D:/temp/RtmpAHx9Vz/RLIBS_3159c783a20fb/GOxploreR/R/sysdata.rdb' is corrupt
--- failed re-building 'GOxploreR.Rmd'

SUMMARY: processing the following file failed:
  'GOxploreR.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    libs   5.3Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:
--- re-building 'co2.Rmd' using rmarkdown
--- finished re-building 'co2.Rmd'

--- re-building 'gpfr.Rmd' using rmarkdown
--- finished re-building 'gpfr.Rmd'

--- re-building 'gpr_ex1.Rmd' using rmarkdown
--- finished re-building 'gpr_ex1.Rmd'

--- re-building 'gpr_ex2.Rmd' using rmarkdown
--- finished re-building 'gpr_ex2.Rmd'

--- re-building 'mgpr.Rmd' using rmarkdown
--- finished re-building 'mgpr.Rmd'

--- re-building 'nsgpr.Rmd' using rmarkdown
Quitting from lines 182-194 (nsgpr.Rmd) 
Warning in dev.off(dv) : processing of the plot ran out of memory
Error: processing vignette 'nsgpr.Rmd' failed with diagnostics:
std::bad_alloc
--- failed re-building 'nsgpr.Rmd'

SUMMARY: processing the following file failed:
  'nsgpr.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
checkRd: (-1) barplot2.Rd:219: Escaped LaTeX specials: \_
checkRd: (-1) colorpanel.Rd:31: Escaped LaTeX specials: \#
checkRd: (-1) qqnorm.aov.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) venn.Rd:59: Escaped LaTeX specials: \_
Specified C++11: please drop specification unless essential
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc   5.3Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) corrApp.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) crdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) descApp.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) layoutApp.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) rbdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) ttApp.Rd:43: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) mlGraphicalVAR.Rd:79: Escaped LaTeX specials: \~
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Packages suggested but not available for checking:
  'taxstats', 'taxstats1516'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
pot:
  function(obj, ...)
pot.BlockGraph:
  function(newg, newd, ...)

h_edges:
  function(obj, ...)
h_edges.RootDepSet:
  function(obj, g)

createObj:
  function(obj, ...)
createObj.HRMBG:
  function(obj, data)

resetParams:
  function(obj, ...)
resetParams.MLE1params:
  function(obj, cnames)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Problems with news in 'NEWS.md':
No news entries found.
accrualReport: multiple local function definitions for 'gg' with
  different formal arguments
Package suggested but not available for checking: 'doMC'
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    R     1.1Mb
    doc   2.7Mb
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'groc.fit':
  'groc.fit'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> cleanEx()
> nameEx("splitinput")
> ### * splitinput
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: splitinput
> ### Title: Split input data into multiple files
> ### Aliases: splitinput
> 
> ### ** Examples
> 
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  144.13 419.62 583.71 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Malformed Description field: should contain one or more complete sentences.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) fmddisc.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:46: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:54: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
checkRd: (-1) gsym.point.Rd:143: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) GUTS-package.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) GUTS.Rd:201: Escaped LaTeX specials: \&
checkRd: (-1) GUTS.Rd:209: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) luzdat.Rd:21: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Output for data("LondonBorough", package = "GWmodel"):
  Error in load(zfile, envir = tmp_env) : empty (zero-byte) input file
  Calls: <Anonymous> ... suppressMessages -> withCallingHandlers -> <Anonymous> -> load
  In addition: Warning message:
  In readChar(con, 5L, useBytes = TRUE) : lzma decoder needed more memory
  Execution halted
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is 182.7Mb
  sub-directories of 1Mb or more:
    R       1.5Mb
    java  179.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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installed size is  5.4Mb
  sub-directories of 1Mb or more:
    libs    1.0Mb
    shiny   4.3Mb
'LazyData' is specified without a 'data' directory
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    HaDeX   4.0Mb
    doc     4.0Mb
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  '.ga.breed' '.ga.fitness' '.ga.init' '.ga.mutate' '.ga.step'
  '.ga.weight'
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checkRd: (-1) HWAlr.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) HWAlrPlot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) HWClr.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) HWClrPlot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) HWIlr.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) HWf.Rd:25: Escaped LaTeX specials: \&
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'LazyData' is specified without a 'data' directory
checkRd: (-1) hash-accessors.Rd:46: Escaped LaTeX specials: \$
checkRd: (-1) hash-class.Rd:44: Escaped LaTeX specials: \$
checkRd: (-1) hash-class.Rd:45: Escaped LaTeX specials: \$
checkRd: (-1) hash-package.Rd:39: Escaped LaTeX specials: \#
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    libs   7.9Mb
GNU make is a SystemRequirements.
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
checkRd: (-1) prm09.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) prm09.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) schools.Rd:18: Escaped LaTeX specials: \&
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc           2.7Mb
    htmlwidgets   2.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   6.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   3.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    doc    3.7Mb
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc   5.1Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'synbreed'
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    doc    2.2Mb
    libs   2.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ohio.Rd:104: Escaped LaTeX specials: \&
checkRd: (-1) ohio.Rd:105: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'defunct':
  'anova.mean' 'print.glht.mmc.multicomp' 'coef.arima.HH' 'glht.mmc'
  'plot.odds.ratio' 'persp.plane' 'persp.floor' 'persp.back.wall.x'
  'persp.back.wall.y' 'persp.setup' 'plot.hov' 'plot.hov.bf'
  'plot.matchMMC' 'seqplot.forecast'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
':::' call which should be '::': 'ggplot2:::guide_axis'
  See the note in ?`:::` about the use of this operator.
Unexported objects imported by ':::' calls:
  'ggplot2:::build_guides' 'ggplot2:::scales_list'
  See the note in ?`:::` about the use of this operator.
Found the following significant warnings:

  Warning: 'as(<dgCMatrix>, "ngCMatrix")' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'INLA'
Found the following significant warnings:
  D:/temp/Rtmp2DKBxZ/R.INSTALL2d043e234a79/highs/inst/HiGHS/src/util/HighsHashTree.h:1152:16: warning: pointer 'iter' used after 'void operator delete(void*)' [-Wuse-after-free]
See 'd:/Rcompile/CRANpkg/local/4.3/highs.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: 'rayshader'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
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checkRd: (-1) Snow.Rd:118: Escaped LaTeX specials: \&
checkRd: (-1) Snow.Rd:142: Escaped LaTeX specials: \&
checkRd: (-1) Yeast.Rd:56: Escaped LaTeX specials: \&
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GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    data   3.5Mb
    libs   1.3Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) disc42.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) discrimination.Rd:31: Escaped LaTeX specials: \&
installed size is 14.6Mb
  sub-directories of 1Mb or more:
    libs  13.6Mb
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'glmmADMB'
checkRd: (-1) Dmean.Rd:62: Escaped LaTeX specials: \&
checkRd: (-1) Dvar.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) babies.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) residuals.rsm.Rd:74: Escaped LaTeX specials: \&
S3 methods shown with full name in documentation object 'all.profiles.nlreg':
  'all.profiles.nlreg'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Package suggested but not available for checking: 'ROI.plugin.mosek'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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installed size is  7.6Mb
  sub-directories of 1Mb or more:
    data   7.1Mb
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    R     2.1Mb
    doc   2.5Mb
checkRd: (-1) attributes_speclib.Rd:73: Escaped LaTeX specials: \$
checkRd: (-1) get_reflectance.Rd:34: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    doc    2.1Mb
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    libs   7.7Mb
checkRd: (-1) simplePostToHost.Rd:14: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'hurricaneexposuredata'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'DecisionNetworks.Rmd' using rmarkdown
--- finished re-building 'DecisionNetworks.Rmd'

--- re-building 'GettingStartedWithHydeNet.Rmd' using rmarkdown
--- finished re-building 'GettingStartedWithHydeNet.Rmd'

--- re-building 'HydeNetPlots.Rmd' using rmarkdown
Quitting from lines 158-167 (HydeNetPlots.Rmd) 
Error: processing vignette 'HydeNetPlots.Rmd' failed with diagnostics:
Graphviz link does not exist. Find a new link
--- failed re-building 'HydeNetPlots.Rmd'

--- re-building 'WorkingWithHydeNetObjects.Rmd' using rmarkdown
--- finished re-building 'WorkingWithHydeNetObjects.Rmd'

SUMMARY: processing the following file failed:
  'HydeNetPlots.Rmd'

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) Trancura9414001.Rd:27: Escaped LaTeX specials: \_
checkRd: (-1) Trancura9414001.Rd:28: Escaped LaTeX specials: \_
checkRd: (-1) hydroPSO.Rd:390: Escaped LaTeX specials: \&
checkRd: (-1) hydroPSO.Rd:408: Escaped LaTeX specials: \&
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    extdata   5.5Mb
    libs      1.1Mb
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    extdata   4.8Mb
'LazyData' is specified without a 'data' directory
checkRd: (-1) SandP500.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) SandP500.Rd:7: Escaped LaTeX specials: \&
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    exdata   6.1Mb
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc   6.3Mb
checkRd: (-1) palettes.Rd:25: Escaped LaTeX specials: \#
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'SparkR'
Specified C++11: please drop specification unless essential
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   6.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'icd'
checkRd: (-1) ICEscale.Rd:53: Escaped LaTeX specials: \^
checkRd: (-1) dpwdg.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) dpwdg.Rd:15: Escaped LaTeX specials: \$
S3 methods shown with full name in documentation object 'orlm':
  'orlm.forboot.fixed' 'orlm.forboot'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) pulmonary.Rd:13: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'rggobi'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
S3 methods shown with full name in documentation object 'internals':
  'plot.page'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> model <- univariatePrior("logit-norm", "x1", -1)
> model$priorParam$values[1,1] <- -.6
> model <- mxRun(model)
Running univariatePrior with 1 parameter
> model$output$fit
[1] 0.4515827
> model$output$gradient
x1 
 0 
> model$output$hessian
   x1
x1  8
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  7.39 0.59 7.98 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Package suggested but not available for checking: 'IFCdata'
'LazyData' is specified without a 'data' directory
installed size is 11.0Mb
  sub-directories of 1Mb or more:
    R      1.5Mb
    doc    1.2Mb
    help   1.4Mb
    libs   6.4Mb
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpi0C5SH\file3f284f7c39e5'
Malformed Description field: should contain one or more complete sentences.
knit_print:
  function(x, ...)
knit_print.Iheatmap:
  function(x, options)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is 11.4Mb
  sub-directories of 1Mb or more:
    dlib-19.20   9.3Mb
    libs         1.4Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is 20.6Mb
  sub-directories of 1Mb or more:
    data      1.4Mb
    doc       4.4Mb
    extdata   1.0Mb
    include   3.0Mb
    libs     10.1Mb
installed size is 21.6Mb
  sub-directories of 1Mb or more:
    libs   10.5Mb
    share  10.2Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    data   3.2Mb
    doc    1.6Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'accdata'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    java   4.2Mb
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) school23.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) school23.Rd:35: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
Package which this enhances but not available for checking: 'gurobi'
Running 'testthat.R' [174s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(DALEX)
  Welcome to DALEX (version: 2.4.3).
  Find examples and detailed introduction at: http://ema.drwhy.ai/
  Additional features will be available after installation of: ggpubr.
  Use 'install_dependencies()' to get all suggested dependencies
  > library(ingredients)
  
  Attaching package: 'ingredients'
  
  The following object is masked from 'package:DALEX':
  
      feature_importance
  
  The following object is masked from 'package:testthat':
  
      describe
  
  > 
  > test_check("ingredients")
  terminate called without an active exception
Error(s) in re-building vignettes:
--- re-building 'vignette_describe.Rmd' using rmarkdown
--- finished re-building 'vignette_describe.Rmd'

--- re-building 'vignette_simulated.Rmd' using rmarkdown
Warning in dev.off(dv) : processing of the plot ran out of memory
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'vignette_simulated.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'vignette_simulated.Rmd'

--- re-building 'vignette_titanic.Rmd' using rmarkdown
--- finished re-building 'vignette_titanic.Rmd'

SUMMARY: processing the following file failed:
  'vignette_simulated.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Package suggested but not available for checking: 'INLA'
Package suggested but not available for checking: 'INLA'
Package unavailable to check Rd xrefs: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    INSPECTumours (development version)
Malformed Title field: should not end in a period.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 10.1Mb
  sub-directories of 1Mb or more:
    doc   9.6Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error in paste0(.S3_methods_table[, 1L], ".", .S3_methods_table[, 2L]) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
In addition: Warning message:
In paste0(.S3_methods_table[, 1L], ".", .S3_methods_table[, 2L]) :
  internal error -4 in R_decompress1
Execution halted
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'surveyspec'
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
9: inDL(x, as.logical(local), as.logical(now), ...)
8: dyn.load(file, DLLpath = DLLpath, ...)
7: library.dynam(lib, package, package.lib)
6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Error: cannot allocate vector of size 33.9 Mb
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Old_01_How_to_use_Iota1.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'Old_01_How_to_use_Iota1.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'Old_01_How_to_use_Iota1.Rmd'


--- re-building 'V_03_Different_Guidance_Functioning.Rmd' using rmarkdown
--- finished re-building 'V_03_Different_Guidance_Functioning.Rmd'

--- re-building 'V_04_Error_Correction.Rmd' using rmarkdown
--- finished re-building 'V_04_Error_Correction.Rmd'

--- re-building 'V_05_Test_New_Raters.Rmd' using rmarkdown
--- finished re-building 'V_05_Test_New_Raters.Rmd'

--- re-building 'iotarelr.Rmd' using rmarkdown
--- finished re-building 'iotarelr.Rmd'

SUMMARY: processing the following files failed:
  'Old_01_How_to_use_Iota1.Rmd'
  'V_02_Estimating_Consequences_for_Subsequent_Analyses.Rmd'

Error: Vignette re-building failed.
Execution halted
File 'iotools/libs/x64/iotools.dll':
  Found non-API calls to R: 'R_GetConnection', 'R_ReadConnection',
    'R_WriteConnection'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Mingw-w64 runtime failure:
    VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack
Running examples in 'ipeadatar-Ex.R' failed
The error occurred in:

Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Error in find.package(package, lib.loc) : 
  there is no package called 'iplots'
Calls: <Anonymous> -> find.package
Execution halted
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Error in sub("[[:blank:]]*([[:alnum:]]+)", "\\1", dp) : 
  invalid regular expression '[[:blank:]]*([[:alnum:]]+)', reason 'Out of memory'
Calls: local -> eval.parent -> eval -> eval -> eval -> eval -> sub
In addition: Warning message:
In sub("[[:blank:]]*([[:alnum:]]+)", "\\1", dp) :
  TRE pattern compilation error 'Out of memory'
Execution halted
Fatal error: couldn't allocate node stack
Warning in gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/CRANpkg/lib/4.3/ipwCoxCSV/Meta/package.rds', probable reason 'Not enough space'
Error in find.package(package, lib.loc) : 
  there is no package called 'ipwCoxCSV'
Calls: <Anonymous> -> Rd_aliases -> find.package
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error(s) in re-building vignettes:
--- re-building 'iraceplot_package.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Warning in system(paste(shQuote(path), "--version"), intern = TRUE) :
  running command '"C:/PROGRA~1/Pandoc/pandoc.exe" --version' had status 251
Error: processing vignette 'iraceplot_package.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'iraceplot_package.Rmd'

SUMMARY: processing the following file failed:
  'iraceplot_package.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
checkRd: (-1) constrained.Rd:49: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Running massageExamples to create 'irg-Ex.R' failed

 NONE
Specified C++11: please drop specification unless essential
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/irlba/libs/x64/irlba.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
4: inDL(x, as.logical(local), as.logical(now), ...)
3: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Running 'edge.R' [0s]
  Running 'prcomp.r' [0s]
  Running 'ssvd.R' [3s]
  Running 'svdr.R' [3s]
  Running 'test.R' [8s]
Running the tests in 'tests/edge.R' failed.
Complete output:
  Fatal error: couldn't allocate memory for pointer stack
checkRd: (-1) bp.coeff.raw.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) fleiss.kappa.raw.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:17: Escaped LaTeX specials: \&
checkRd: (-1) ir_to_transmittance.Rd:49: Escaped LaTeX specials: \&
Error: package or namespace load failed for 'irtDemo' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/digest/libs/x64/digest.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), d
Execution halted
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'irtoys-vignette.Rmd' using rmarkdown
Warning in dev.off() : processing of the plot ran out of memory
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'irtoys-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'irtoys-vignette.Rmd'

SUMMARY: processing the following file failed:
  'irtoys-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Warning in (function (n)  : internal error -4 in R_decompress1
Error in (function (n)  : 
  lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/irtpwr/help/irtpwr.rdb' is corrupt
Execution halted
Running massageExamples to create 'irtpwr-Ex.R' failed
Fatal error: couldn't allocate memory for pointer stack

 NONE
Fatal error: couldn't allocate node stack
Specified C++11: please drop specification unless essential
S3 methods shown with full name in documentation object 'print.Item':
  'print.Item'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problem found in 'ppa.normalize.Rd'
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack

Fatal error: couldn't allocate memory for pointer stack
checkRd: (-1) pine.Rd:20: Escaped LaTeX specials: \&
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpk19bTu\fileda9c702e6d3f'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpk19bTu\fileda9c702e6d3f'
Error in system2(DLL_nm, c("-x", shQuote(f)), stdout = TRUE, stderr = TRUE) : 
  'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\objdump.exe -x "D:/RCompile/CRANpkg/lib/4.3/isingLenzMC/libs/x64/isingLenzMC.dll"'
Calls: <Anonymous> ... unlist -> lapply -> lapply -> FUN -> read_symbols_from_dll
Execution halted


See 'Writing portable packages' in the 'Writing R Extensions' manual.
S3 methods shown with full name in documentation object 'islasso-internal':
  'format.perc'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Output for data("dowjones", package = "ismev"):
  Error in load(zfile, envir = tmp_env) : empty (zero-byte) input file
  Calls: <Anonymous> ... suppressMessages -> withCallingHandlers -> <Anonymous> -> load
  In addition: Warning message:
  In readChar(con, 5L, useBytes = TRUE) : lzma decoder needed more memory
  Execution halted
Output for data("engine", package = "ismev"):
  During startup - Warning messages:
  1: package 'utils' in options("defaultPackages") was not found 
  2: In .getClassesFromCache(Class) :
    restarting interrupted promise evaluation
  3: package 'grDevices' in options("defaultPackages") was not found 
  4: In get0(cname, where, inherits = inherits) :
    restarting interrupted promise evaluation
'LazyData' is specified without a 'data' directory
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In doTryCatch(return(expr), name, parentenv, handler) :
  restarting interrupted promise evaluation
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate memory for pointer stack
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Running massageExamples to create 'isopat-Ex.R' failed

 NONE
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
Specified C++14: please drop specification unless essential
Error in readRDS(nsInfoFilePath) : error reading from connection
Execution halted
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'isoSurv-Ex.R' failed

 NONE
Fatal error: couldn't allocate node stack
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    data   1.8Mb
    doc    2.3Mb
    libs   2.7Mb
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error: package or namespace load failed for 'istacr':
 .onLoad failed in loadNamespace() for 'methods', details:
  call: NULL
  error: cannot allocate vector of size 324 Kb
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    app    4.3Mb
    data   1.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gurobi'
Package suggested but not available for checking: 'locClass'
checkRd: (-1) ivmodel.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) ivmodelFormula.Rd:79: Escaped LaTeX specials: \&
Packages suggested but not available for checking: 'gurobi', 'cplexAPI'
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is 12.5Mb
  sub-directories of 1Mb or more:
    art_profiles   1.5Mb
    libs          10.3Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
CreateThread failed
vec_ptype_abbr:
  function(x, ..., prefix_named, suffix_shape)
vec_ptype_abbr.mesh_500m:
  function(x)

vec_ptype_abbr:
  function(x, ..., prefix_named, suffix_shape)
vec_ptype_abbr.mesh_1km:
  function(x)

vec_ptype_abbr:
  function(x, ..., prefix_named, suffix_shape)
vec_ptype_abbr.mesh_80km:
  function(x)

vec_ptype_abbr:
  function(x, ..., prefix_named, suffix_shape)
vec_ptype_abbr.mesh_10km:
  function(x)

vec_ptype_abbr:
  function(x, ..., prefix_named, suffix_shape)
vec_ptype_abbr.mesh_250m:
  function(x)

vec_ptype_abbr:
  function(x, ..., prefix_named, suffix_shape)
vec_ptype_abbr.mesh_125m:
  function(x)

vec_ptype_abbr:
  function(x, ..., prefix_named, suffix_shape)
vec_ptype_abbr.mesh_100m:
  function(x)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc    2.5Mb
    libs   2.7Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    extdata   5.5Mb
    libs      1.1Mb
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    R      3.7Mb
    i18n   4.0Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package which this enhances but not available for checking: 'remMap'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
vec_ptype_abbr:
  function(x, ..., prefix_named, suffix_shape)
vec_ptype_abbr.json2:
  function(x)

vec_ptype_full:
  function(x, ...)
vec_ptype_full.json2:
  function(x)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
S3 methods shown with full name in documentation object 'vec_ptype2.json2':
  'vec_ptype2.pq_json'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    pre-release juicr (2017 - 2021)
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'bw.abram.temp':
  'bw.abram.temp'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Minor Changes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'rkward'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'unlist.constr':
  'unlist.constr'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'koRpus.lang.de', 'koRpus.lang.es', 'koRpus.lang.fr',
  'koRpus.lang.it', 'koRpus.lang.nl', 'koRpus.lang.pt',
  'koRpus.lang.ru'

Package which this enhances but not available for checking: 'rkward'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) alphaOnly.Rd:25: Escaped LaTeX specials: \^
checkRd: (-1) alphaOnly.Rd:26: Escaped LaTeX specials: \$
checkRd: (-1) escape.Rd:28: Escaped LaTeX specials: \$
checkRd: (-1) natlongsurv.Rd:28: Escaped LaTeX specials: \$
S3 methods shown with full name in documentation object 'stat.functions':
  'kappa.cor'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
calibrate:
  function(dsvord, ...)
calibrate.dsvord:
  function(dsvord, site, dims, family, gamma, keep.models)

varplot:
  function(pca, ...)
varplot.pca:
  function(x, dim)

loadings:
  function(pca, ...)
loadings.pca:
  function(x, dim, digits, cutoff)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
S3 methods shown with full name in documentation object 'pca':
  'varplot.pca'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    data   8.2Mb
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   5.5Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc              1.1Mb
    libs             1.7Mb
    shiny-landsepi   1.3Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LaplaceApproximation.Rd:485: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:115: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:117: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) simulate.ergmm.Rd:35: Escaped LaTeX specials: \$
checkRd: (-1) simulate.ergmm.Rd:36: Escaped LaTeX specials: \$
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) LKrig.MLE.Rd:114: Escaped LaTeX specials: \$ \$
checkRd: (-1) LKrig.MLE.Rd:115: Escaped LaTeX specials: \$
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc   4.7Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) goodnessfit.Rd:105: Escaped LaTeX specials: \&
checkRd: (-1) lba.Rd:252: Escaped LaTeX specials: \&
checkRd: (-1) pregnancy.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) pregnancy.Rd:46: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    lcars.0.3.1
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/LDABiplots.Rcheck/00install.out' for details.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/LDAShiny.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    geojson  12.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    light.interception.voxels() - This function create the Fraction absorbed incident light
    light.interception.raster() - Create a raster of Fraction absorbed incident light
    light.incident.voxels() - This function create the Fraction incident light
    light.incident.raster() - Create a raster of the Fraction incident light
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'doMC'
checkRd: (-1) leaps.Rd:38: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    doc    2.5Mb
    libs   5.4Mb
Package suggested but not available for checking: 'doMC'
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Found the following significant warnings:
  leidenalg/src/MutableVertexPartition.cpp:915:24: warning: ignoring return value of 'std::vector<bool, _Alloc>::reference std::vector<bool, _Alloc>::operator[](size_type) [with _Alloc = std::allocator<bool>; reference = std::vector<bool>::reference; size_type = long long unsigned int]', declared with attribute 'nodiscard' [-Wunused-result]
See 'd:/Rcompile/CRANpkg/local/4.3/leidenbase.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   6.4Mb
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    doc   5.9Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    R     1.3Mb
    doc   5.9Mb
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   3.3Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'doMC'
Specified C++11: please drop specification unless essential
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   4.0Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) hydro.Rd:17: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'rsyslog'
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) predict.lb.Rd:16: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    R         1.2Mb
    doc       1.0Mb
    extdata   1.1Mb
    libs      1.7Mb
Packages suggested but not available for checking:
  'gWidgets', 'gWidgetsRGtk2'
'LazyData' is specified without a 'data' directory
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    doc    2.1Mb
    libs   1.0Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LIMEcoli.Rd:125: Escaped LaTeX specials: \_
checkRd: (-1) Read.Rd:88: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:92: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:98: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:104: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:105: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:106: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:107: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:108: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:109: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:110: Escaped LaTeX specials: \#
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checkRd: (-1) Read.Rd:112: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:114: Escaped LaTeX specials: \# \#
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'BIC.threshold':
  'BIC.threshold'

S3 methods shown with full name in documentation object 'BIC.threshold.ggm':
  'BIC.threshold.ggm'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) solveLP.Rd:119: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) lstats.liu.Rd:41: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) MHDI.Rd:23: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R          1.5Mb
    doc        1.6Mb
    libs       1.4Mb
    testdata   1.3Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'rmcorr'
Specified C++11: please drop specification unless essential
checkRd: (-1) cauchypoly.Rd:39: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) cauchypoly.Rd:40: Escaped LaTeX specials: \_
checkRd: (-1) normpoly.Rd:38: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) normpoly.Rd:39: Escaped LaTeX specials: \_
Specified C++11: please drop specification unless essential
checkRd: (-1) lmSubsets-package.Rd:48: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Author
    Maintainer
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) SPSloess.Rd:71: Escaped LaTeX specials: \^ \^
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) TrafficFlow.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) ACS.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) EmployedACS.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSale.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSaleCA.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSaleCanton.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSaleNY.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) MustangPrice.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) MustangPrice.Rd:24: Escaped LaTeX specials: \$
checkRd: (-1) SalaryGender.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) SandP500.Rd:6: Escaped LaTeX specials: \&
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checkRd: (-1) SandwichAnts2.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) StockChanges.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) StockChanges.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) TrafficFlow.Rd:18: Escaped LaTeX specials: \#
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'rsyslog'
Package suggested but not available for checking: 'rsyslog'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) butstrap.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) butstrap.nri.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) butstrap.s.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) maxauc.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) maxauc.s.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) nri.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) roc.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) roc.s.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) sensspec.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) sensspec.s.Rd:47: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'scio'
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    extdata   4.5Mb
    libs      1.0Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) lpepa.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:90: Escaped LaTeX specials: \&
checkRd: (-1) lpridge.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) lpridge.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) lpridge.Rd:65: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) specialchars.Rd:6: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LS.kalman.Rd:65: Escaped LaTeX specials: \&
checkRd: (-1) spectral.density.Rd:55: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    R      4.0Mb
    libs   1.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is 11.4Mb
  sub-directories of 1Mb or more:
    libs  11.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
During startup - Warning messages:
1: In namespaceIsSealed(ns) : internal error -4 in R_decompress1
2: package "methods" in options("defaultPackages") was not found 
3: In namespaceIsSealed(ns) : restarting interrupted promise evaluation
Error: package or namespace load failed for 'macroBiome' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fields/libs/x64/fields.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg)
Execution halted
GNU make is a SystemRequirements.
Running 'testthat.R' [21s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(madrat)
  Loading required package: magclass
  > 
  > test_check("madrat")
  [ FAIL 1 | WARN 0 | SKIP 7 | PASS 386 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (6)
  • reshape2 cannot be loaded (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-config.R:3:3'): cache folder can be set properly ─────────────
  getwd() not identical to getConfig("cachefolder").
  1/1 mismatches
  x[1]: "d:/Rcompile/CRANpkg/local/4.3/madrat.Rcheck/tests/testthat"
  y[1]: "D:/RCompile/CRANpkg/local/4.3/madrat.Rcheck/tests/testthat"
  
  [ FAIL 1 | WARN 0 | SKIP 7 | PASS 386 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'quitte'
installed size is 42.4Mb
  sub-directories of 1Mb or more:
    doc    6.4Mb
    libs  35.5Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    R      1.5Mb
    data   2.3Mb
    libs   1.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Package unavailable to check Rd xrefs: 'INLA'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:
--- re-building 'case-study-partial.Rmd' using rmarkdown
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family not found in Windows font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family not found in Windows font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family not found in Windows font database
--- finished re-building 'case-study-partial.Rmd'

--- re-building 'introduction.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'introduction.Rmd'

SUMMARY: processing the following file failed:
  'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpKOwTu8\file47c42217342e'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpKOwTu8\file47c42217342e'
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'overview.Rmd' using rmarkdown
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  unable to allocate bitmap
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  opening device failed
Quitting from lines 119-120 (overview.Rmd) 
Error: processing vignette 'overview.Rmd' failed with diagnostics:
unable to start png() device
--- failed re-building 'overview.Rmd'

SUMMARY: processing the following file failed:
  'overview.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    doc   6.7Mb
During startup - Warning message:
package 'grDevices' in options("defaultPackages") was not found 
Error in find.package(package, lib.loc) : 
  there is no package called 'mand'
Calls: <Anonymous> -> find.package
Execution halted
Fatal error: couldn't allocate node stack
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/png/libs/x64/png.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
9: inDL(x, as.logical(local), as.logical(now), ...)
8: dyn.load(file, DLLpath = DLLpath, ...)
7: library.dynam(lib, package, package.lib)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
    VirtualProtect failed with code 0x5af
Running massageExamples to create 'manet-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate memory for pointer stack



See 'Writing portable packages' in the 'Writing R Extensions' manual.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpWA0W08\file93cce0a2751'
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpAJTOIt\file237883635539'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpAJTOIt\file237883635539'
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data   1.2Mb
    doc    3.5Mb
Error: package or namespace load failed for 'manydata' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fs/libs/x64/fs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain =
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
Error: package or namespace load failed for 'maotai':
 cannot allocate vector of size 849 Kb
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain = NA)
       else stop(msg, call. = FALSE, domain = NA)
   })
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
Fatal error: couldn't allocate node stack

Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Warning: parse error in file 'lines':
cannot allocate vector of size 141 Kb
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
** will not attempt to run examples
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpy02Gj1\file2e23847fa71c7'
Running examples in 'mapbayr-Ex.R' failed
The error most likely occurred in:

> ### Name: mapbayest
> ### Title: Estimate parameters (maximum a posteriori)
> ### Aliases: mapbayest
> 
> ### ** Examples
> 
> # First, code a model
> code1 <- "$PARAM ETA1 = 0, ETA2 = 0,
+ KA = 0.5, TVCL = 1.1, TVV = 23.3
+ $OMEGA 0.41 0.32
+ $SIGMA 0.04 0
+ $CMT DEPOT CENT
+ $PK
+ double CL=TVCL*exp(ETA1+ETA(1));
+ double V=TVV*exp(ETA2+ETA(2)) ;
+ $ERROR
+ double DV=CENT/V*(1+EPS(1))+EPS(2);
+ $PKMODEL ncmt = 1, depot = TRUE
+ $CAPTURE DV CL
+ "
> 
> my_model <- mrgsolve::mcode("my_model", code1)
Building my_model ... error.

---:: stderr ::---------------------------------------------
stderr could not be recovered after system4 call
------------------------------------------------------------
Error: the model build step failed.
Execution halted
Error: package or namespace load failed for 'mapboxapi' in as(value, dataClass):
 lazy-load database 'D:/RCompile/recent/R/library/methods/R/methods.rdb' is corrupt
In addition: Warning message:
In as(value, dataClass) : internal error -4 in R_decompress1
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Error(s) in re-building vignettes:
installed size is 33.5Mb
  sub-directories of 1Mb or more:
    mapdata  33.4Mb
Specified C++11: please drop specification unless essential
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    data          1.3Mb
    doc           1.6Mb
    htmlwidgets   2.2Mb
    libs          3.2Mb
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Bug Fixes
'LazyData' is specified without a 'data' directory
Running examples in 'mapedit-Ex.R' failed
The error occurred in:
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpSgijWa\file2ae785df52837'
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/Rcpp/libs/x64/Rcpp.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
9: inDL(x, as.logical(local), as.logical(now), ...)
8: dyn.load(file, DLLpath = DLLpath, ...)
7: library.dynam(lib, package, package.lib)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Error: cannot allocate vector of size 39 Kb
Execution halted
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Running massageExamples to create 'mapi-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpQ1UYGG\file2aaa817d44667'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpQ1UYGG\file2aaa817d44667'
Running massageExamples to create 'mapiso-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Specified C++11: please drop specification unless essential
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Loading this package had a fatal error status code 1
Loading log:
Error in readRDS(mapfile) : error reading from connection
Error: package or namespace load failed for 'mapping':
 unable to load R code in package 'leafem'
Execution halted
Running examples in 'mappings-Ex.R' failed
The error occurred in:
Running examples in 'mapplots-Ex.R' failed
The error most likely occurred in:

> ### Name: legend.grid
> ### Title: Legend for
> ### Aliases: legend.grid
> 
> ### ** Examples
> 
> data(coast)
Warning in readChar(con, 5L, useBytes = TRUE) :
  lzma decoder needed more memory
Error in load(zfile, envir = tmp_env) : empty (zero-byte) input file
Calls: data -> load
Execution halted
Specified C++11: please drop specification unless essential
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    R      2.7Mb
    data   2.4Mb
    libs   1.3Mb
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
14: inDL(x, as.logical(local), as.logical(now), ...)
13: dyn.load(file, DLLpath = DLLpath, ...)
12: library.dynam(lib, package, package.lib)
11: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
10: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
        versionCheck = vI[[i]]), from = package)
9: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
8: asNamespace(ns)
7: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = packag
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate memory for pointer stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpYTFm3l\file138c4c042951'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpYTFm3l\file138c4c042951'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    To do
Error in if (grepl("RD[ABX][1-9]", magic, useBytes = TRUE)) { : 
    argument is of length zero
  Calls: <Anonymous> -> checkRdaFiles
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'intro.Rmd' using rmarkdown
Quitting from lines 261-267 (intro.Rmd) 
Warning in dev.off(dv) : processing of the plot ran out of memory
Error: processing vignette 'intro.Rmd' failed with diagnostics:
cannot allocate vector of size 12.5 Mb
--- failed re-building 'intro.Rmd'

SUMMARY: processing the following file failed:
  'intro.Rmd'

Error: Vignette re-building failed.
Execution halted
Specified C++11: please drop specification unless essential
Running examples in 'mapsFinland-Ex.R' failed
The error most likely occurred in:

> ### Name: taajama2019
> ### Title: A data set containing map of Finland with urbanisation category
> ###   boundaries
> ### Aliases: taajama2019
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## Not run: 
> ##D library(ggplot2)
> ##D ggplot(taajama2019) +geom_sf(aes(fill = kr_name))+
> ##D labs(fill = "Kaupunkimaisuus")+
> ##D   theme(legend.title = element_text(size = 6),legend.text = element_text(size=6),
> ##D   legend.key.size = unit(10, "pt"),legend.key.width = unit(4,"pt"),
> ##D   legend.key.height = unit(4,"pt"),
> ##D    legend.position = c(0.22,0.52))
> ##D    
> ## End(Not run)
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  5.42 0.46 7.22 NA NA 
> grDevices::dev.off()
Error in grDevices::dev.off() : 
  'R_Calloc' could not allocate memory (1381420 of 1 bytes)
Execution halted
Fatal error: couldn't allocate node stack
Running examples in 'mapSpain-Ex.R' failed
The error occurred in:
Error: there is no package called 'utf8'
Call sequence:
13: doWithOneRestart(return(expr), restart)
12: withOneRestart(expr, restarts[[1L]])
11: withRestarts(stop(cond), retry_loadNamespace = function() NULL)
10: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
9: asNamespace(ns)
8: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
6: asNamespace(ns)
5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Running examples in 'maps-Ex.R' failed
The error most likely occurred in:

> ### Name: iso.expand
> ### Title: Identify countries by ISO 3166 codes (2 or 3 letters) or by
> ###   Sovereignty.
> ### Aliases: sov.expand iso.expand iso.alpha
> 
> ### ** Examples
> 
> # France and all its overseas departments, territories etc.
> sov.expand("France") # France and all its overseas departments, territories etc.
[1] "(^French Southern and Antarctic Lands)|(^Saint Barthelemy)|(^France)|(^Clipperton Island)|(^Guadeloupe)|(^French Guiana)|(^Saint Martin)|(^Mozambique)|(^Martinique)|(^Mayotte)|(^New Caledonia)|(^French Polynesia)|(^Reunion)|(^Saint Pierre and Miquelon)|(^Wallis and Futuna)"
> 
> # Canary Islands are not included in map("Spain")
> iso.expand("ES")
[1] "(^Spain)|(^Canary Islands)"
> map(regions=sov.expand("Spain"))
Error in plot.new() : 
  'R_Calloc' could not allocate memory (1598411 of 1 bytes)
Calls: map -> plot.new
Execution halted
Error: 'R_Calloc' could not allocate memory (1598411 of 1 bytes)
Fatal error: error during cleanup
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpGeZXjc\file2c9ec900244c'
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: cannot allocate vector of size 537 Kb
Call sequence:
14: (function (n) 
    {
        if (existsInFrame(n, envenv)) 
            envenv[[n]]
        else {
            e <- mkenv()
            envenv[[n]] <- e
            key <- env[[n]]
            ekey <- if (is.list(key)) 
                key$eagerKey
            else key
            data <- lazyLoadDBfetch(ekey, datafile, compressed, envhook)
            parent.env(e) <- if (!is.null(data$enclos)) 
                data$enclos
            else emptyenv()
            list2env(data$bindings, e)
            if (!is.null(data$attributes)) 
                attributes(e) <- data$attributes
            if (!is.null(data$isS4) && data$isS4) 
                .Internal(setS4Object(e, TRUE, TRUE))
            if (is.list(key)) {
                expr <- quote(lazyLoadDBfetch(KEY, datafile, compressed, 
                    envhook))
                .Internal(makeLazy(names(key$lazyKeys), key$lazyKeys, 
                    expr, parent.env
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Error in xzfile(file, "wb", compression = 9) : cannot open the connection
  Calls: <Anonymous> -> resaveRdaFiles -> save -> xzfile
  In addition: Warning message:
  In xzfile(file, "wb", compression = 9) :
    cannot initialize lzma encoder, error 5
  Execution halted
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [2s] NOTE
Fatal error: couldn't allocate node stack
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problem found in 'counts.Rd'
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error: package 'methods' could not be loaded
In addition: Warning message:
In (function (n)  : internal error -4 in R_decompress1
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate memory for pointer stack
checkRd: (-1) Interpolation-class.Rd:41: Escaped LaTeX specials: \#
checkRd: (-1) MareyMap-class.Rd:85: Escaped LaTeX specials: \_
checkRd: (-1) MareyMap-methods.Rd:11: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) MareyMap-methods.Rd:12: Escaped LaTeX specials: \_
checkRd: (-1) SpeciesMaps-methods.Rd:11: Escaped LaTeX specials: \_
checkRd: (-1) interpolation-methods.Rd:13: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
checkRd: (-1) mma.Rd:67: Escaped LaTeX specials: \&
Loading this package had a fatal error status code 301
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'set.scale':
  'scale.dm' 'scale.par'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    examples   2.7Mb
    libs       1.3Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack

Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc   3.7Mb
S3 methods shown with full name in documentation object 'utility.functions':
  'all.equal.vector'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'flashier'
Running examples in 'maskRangeR-Ex.R' failed
The error most likely occurred in:

> ### Name: annotate
> ### Title: Annotate point data with rasters based on matching dates.
> ### Aliases: annotate
> 
> ### ** Examples
> 
> 
> r1 <- raster::raster(nrows=50, ncols=50, xmn=-50, xmx=50)
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/lattice/libs/x64/lattice.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: loadNamespace ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
Fatal error: couldn't allocate node stack
Package suggested but not available for checking: 'gurobi'
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rrelaxiv'
Running examples in 'mathml-Ex.R' failed
The error most likely occurred in:

> ### Name: cal
> ### Title: Calligraphic font
> ### Aliases: cal
> 
> ### ** Examples
> 
> mathjax(quote(K %in% cal(K)))
Warning in rolog::once(call("r2mathjax", term, expression(X), flags), options = list(preproc = list(rolog::preproc,  :
  swipl not found in the PATH. Please set SWI_HOME_DIR accordingly or install R package rswipl.
Error in t$X : $ operator is invalid for atomic vectors
Calls: mathjax -> paste
Execution halted
Running massageExamples to create 'mathpix-Ex.R' failed

 NONE
checkRd: (-1) size_t-class.Rd:6: Escaped LaTeX specials: \_
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/sass/libs/x64/sass.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
12: inDL(x, as.logical(local), as.logical(now), ...)
11: dyn.load(file, DLLpath = DLLpath, ...)
10: library.dynam(lib, package, package.lib)
9: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
8: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
6: asNamespace(ns)
5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1:
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'matricks-Ex.R' failed

 NONE
Running 'testthat.R' [0s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) maxControl.Rd:83: Escaped LaTeX specials: \&
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
gradient close to zero (gradtol) 
5  iterations
estimate: 1.940473 
Function value: -33.70681 
> vcov(a)
           [,1]
[1,] 0.03764041
> ## Estimate with analytic gradient and hessian
> a <- maxLik(loglik, gradlik, hesslik, start=1)
> vcov(a)
           [,1]
[1,] 0.03765436
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  6.07 0.18 6.3 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'doMC'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc    3.8Mb
    libs   1.5Mb
checkRd: (-1) mc.lnOR.Rd:7: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) MCtest.Rd:39: Escaped LaTeX specials: \#
checkRd: (-1) MCtest.Rd:40: Escaped LaTeX specials: \#
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc   2.9Mb
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  datablock.h:124:42: warning: pointer used after 'void operator delete(void*)' [-Wuse-after-free]
See 'd:/Rcompile/CRANpkg/local/4.3/MCMCpack.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    doc   6.8Mb
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) eigp.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:41: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Initial version.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) glass.Rd:23: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) glass.Rd:24: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) glass.Rd:25: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) glass.Rd:26: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) pBED.Rd:34: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    doc       1.9Mb
    extdata   5.2Mb
'LazyData' is specified without a 'data' directory
checkRd: (-1) mriTest.Rd:9: Escaped LaTeX specials: \&
checkRd: (-1) riTest.Rd:9: Escaped LaTeX specials: \&
Depends: includes the non-default packages:
  'MASS', 'boot', 'RColorBrewer', 'scatterplot3d', 'tcltk', 'tcltk2',
  'tkrplot', 'rpanel', 'rgl'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   3.9Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
residualPlots:
  function(model, ...)
residualPlots.expData:
  function(object, ...)

residualPlots:
  function(model, ...)
residualPlots.neModel:
  function(object, ...)

residualPlot:
  function(model, ...)
residualPlot.neModel:
  function(object, ...)

residualPlot:
  function(model, ...)
residualPlot.expData:
  function(object, ...)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    R     1.4Mb
    doc   3.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) Soybean.Rd:15: Escaped LaTeX specials: \#
checkRd: (-1) Soybean.Rd:33: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    libs   6.8Mb
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'genuMet'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 14.4Mb
  sub-directories of 1Mb or more:
    data       3.0Mb
    examples  10.3Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) dslp.Rd:11: Escaped LaTeX specials: \&
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installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc    2.3Mb
    help   2.0Mb
    libs   1.2Mb
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Running 'testthat.R' [31s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(meteR)
  > 
  > test_check("meteR")
  1    0.00146    0.00146   [1] TRUE
  2    0.000162    0.000162   [1] TRUE
  3    0.000155    0.000155   [1] TRUE
  4    0.00464    0.00464   [1] TRUE
  5    0.007085    0.007085   [1] TRUE
  6    0.00511    0.00511   [1] TRUE
  7    0.00261    0.00261   [1] TRUE
  8    0.00279    0.00279   [1] TRUE
  9    0.021    0.021   [1] TRUE
  10    0.00823    0.00823   [1] TRUE
  11    0.0168    0.0168   [1] TRUE
  12    0.0135    0.0135   [1] TRUE
  13    0.0228    0.0228   [1] TRUE
  14    0.000174    0.000174   [1] TRUE
  15    0.000254    0.000254   [1] TRUE
  16    0.00042    0.00042   [1] TRUE
  17    0.000244    0.000244   [1] TRUE
  18    0.000488    0.000488   [1] TRUE
  19    0.000342    0.000341   [1] TRUE
  20    0.00168    0.00168   [1] TRUE
  21    5.9e-05    5.92e-05   [1] TRUE
  22    4.3e-05    4.27e-05   [1] TRUE
  23    0.000117    0.000117   [1] TRUE
  24    0.061    0.061   [1] TRUE
  25    0.003175    0.003175   [1] TRUE
  26    0.003872    0.003872   [1] TRUE
  27    0.134    0.134   [1] TRUE
  28    0.0189    0.0189   [1] TRUE
  29    0.00109    0.00109   [1] TRUE
  simulating data that conform to state variables: 
  attempt 1 
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 43 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_zScore.R:11:3'): z score for logLik is approx chi-squared ────
  ... < 0.05 is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 43 ]
  Error: Test failures
  Execution halted
checkRd: (-1) cardiac.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) plvol.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) sbp.Rd:16: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
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installed size is  8.4Mb
  sub-directories of 1Mb or more:
    R      1.7Mb
    doc    2.6Mb
    libs   2.3Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    mev v.1.9x
    mev v.1.8x
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc   4.6Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
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Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'structSSI'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
S3 methods shown with full name in documentation object 'complete.miceadds':
  'complete.mids.nmi' 'complete.mids.1chain'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) IPDNa.Rd:42: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
S3 methods shown with full name in documentation object 'cbind.mids':
  'cbind.mids'

S3 methods shown with full name in documentation object 'rbind.mids':
  'rbind.mids'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'microcontax.data'
Package unavailable to check Rd xrefs: 'microcontax.data'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    doc    5.5Mb
    lib    1.2Mb
    libs   1.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Package suggested but not available for checking: 'gurobi'
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
':::' call which should be '::': 'parallel:::detectCores'
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    libs   6.5Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'BRugs'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'l1_similarity'
checkRd: (-1) AKMCS.Rd:215: Escaped LaTeX specials: \&
checkRd: (-1) BMP.Rd:164: Escaped LaTeX specials: \&
checkRd: (-1) IRW.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) IRW.Rd:151: Escaped LaTeX specials: \&
checkRd: (-1) MP.Rd:142: Escaped LaTeX specials: \&
checkRd: (-1) MetropolisHastings.Rd:58: Escaped LaTeX specials: \&
checkRd: (-1) SubsetSimulation.Rd:152: Escaped LaTeX specials: \&
checkRd: (-1) oscillator_d6.Rd:14: Escaped LaTeX specials: \&
Error(s) in re-building vignettes:
--- re-building 'README.Rmd' using rmarkdown
INFO - This is Biber 2.16
INFO - Logfile is 'README.blg'
INFO - Reading 'README.bcf'
ERROR - Error: Found biblatex control file version 3.10, expected version 3.7.
This means that your biber (2.16) and biblatex (3.19) versions are incompatible.
See compat matrix in biblatex or biber PDF documentation.
INFO - ERRORS: 1
Warning: LaTeX Warning: Empty bibliography on input line 181.
Warning: LaTeX Warning: There were undefined references.
Warning: LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
Warning: Package rerunfilecheck Warning: File `README.out' has changed.
Warning: (rerunfilecheck)                Rerun to get outlines right
Warning: (rerunfilecheck)                or use package `bookmark'.
Warning: Package biblatex Warning: Please (re)run Biber on the file:
Warning: (biblatex)                README
Warning: (biblatex)                and rerun LaTeX afterwards.
Error: processing vignette 'README.Rmd' failed with diagnostics:
Failed to build the bibliography via biber
--- failed re-building 'README.Rmd'

SUMMARY: processing the following file failed:
  'README.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/MixAll.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) SLD.Rd:20: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Bug Fix
    Update Vignettes
    Function Optimizing
    New Functions
    Vignette
    Optimization
    Fix Bugs
    Add New Function
    Update Description Files
    Fix bugs
    New .R files
    Update Old .R files
Specified C++11: please drop specification unless essential
checkRd: (-1) mixmeta-package.Rd:115: Escaped LaTeX specials: \&
checkRd: (-1) mixmeta.ml.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) ml.igls.Rd:62: Escaped LaTeX specials: \&
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
checkRd: (-1) ssize.propCI.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) BreastCancer.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) Ionosphere.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) Ionosphere.Rd:59: Escaped LaTeX specials: \&
checkRd: (-1) PimaIndiansDiabetes.Rd:19: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
checkRd: (-1) Texture.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) AutumnLab.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) gp.list.Rd:16: Escaped LaTeX specials: \#
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'ueadata1', 'ueadata2', 'ueadata3', 'ueadata4', 'ueadata5',
  'ueadata6', 'ueadata7', 'ueadata8'
Found the following significant warnings:
  ./mlpack/core/data/save_impl.hpp:107:40: warning: 'bool arma::Mat<eT>::quiet_save(std::ostream&, arma::file_type) const [with eT = long long unsigned int; std::ostream = std::basic_ostream<char>]' is deprecated [-Wdeprecated-declarations]
  ./mlpack/core/data/save_impl.hpp:128:43: warning: 'bool arma::Mat<eT>::quiet_save(std::ostream&, arma::file_type) const [with eT = long long unsigned int; std::ostream = std::basic_ostream<char>]' is deprecated [-Wdeprecated-declarations]
See 'd:/Rcompile/CRANpkg/local/4.3/mlpack.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
Specified C++14: please drop specification unless essential
installed size is 16.7Mb
  sub-directories of 1Mb or more:
    libs  16.3Mb
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 13.6Mb
  sub-directories of 1Mb or more:
    libs  13.2Mb
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is 15.6Mb
  sub-directories of 1Mb or more:
    images   1.1Mb
    shiny   14.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 10.2Mb
  sub-directories of 1Mb or more:
    doc    5.9Mb
    libs   3.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'Flury'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Package suggested but not available for checking: 'alstructure'

Packages which this enhances but not available for checking:
  'miraculix', 'MoBPSmaps'
Packages suggested but not available for checking:
  'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene'
'LazyData' is specified without a 'data' directory
checkRd: (-1) modeest-package.Rd:150: Escaped LaTeX specials: \&
checkRd: (-1) vieu.Rd:56: Escaped LaTeX specials: \&
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
train:
  function(x, ...)
train.model_grid:
  function(mg, train_all, resample_seed)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
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Error(s) in re-building vignettes:
--- re-building 'ms-perks-features.Rmd' using rmarkdown
--- finished re-building 'ms-perks-features.Rmd'

--- re-building 'ms-r-python-examples.Rmd' using rmarkdown
--- finished re-building 'ms-r-python-examples.Rmd'

--- re-building 'ms-rmarkdown.Rmd' using rmarkdown
terminate called without an active exception
SUMMARY: processing the following file failed:
  'ms-rmarkdown.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) CHECKSUCCESS.Rd:44: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    * efourier with default norm=TRUE now messages about how wrong it may be
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
installed size is 14.7Mb
  sub-directories of 1Mb or more:
    htmlwidgets  14.7Mb
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    libs   1.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [77s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(motifcluster)
  > 
  > test_check("motifcluster")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 652 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_clustering.R:91:11'): run_motif_clustering returns correct values ──
  Error in `.T2C(newTMat(i = ij[, 1], j = ij[, 2], x = e1@x[ii[[1]]] * e2@x[ii[[2]]]))`: 'R_Calloc' could not allocate memory (12547 of 8 bytes)
  Backtrace:
      ▆
   1. └─motifcluster::run_motif_clustering(...) at test_clustering.R:91:10
   2.   └─motifcluster::run_motif_embedding(...)
   3.     └─motifcluster::build_motif_adjacency_matrix(...)
   4.       └─motifcluster:::mam_M10(...)
   5.         ├─J * (Jn %*% G)
   6.         └─J * (Jn %*% G)
   7.           └─Matrix:::.Arith.Csparse(e1, e2, .Generic, class. = "dgCMatrix")
   8.             └─Matrix:::.T2C(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 652 ]
  Error: Test failures
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'v1_intro.Rmd' using rmarkdown
Quitting from lines 93-99 (v1_intro.Rmd) 
Error: processing vignette 'v1_intro.Rmd' failed with diagnostics:
cannot allocate vector of size 107.0 Mb
--- failed re-building 'v1_intro.Rmd'

SUMMARY: processing the following file failed:
  'v1_intro.Rmd'

Error: Vignette re-building failed.
Execution halted
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'corpus.useR.2008.abstracts'
During startup - Warning message:
  package 'stats' in options("defaultPackages") was not found
Specified C++11: please drop specification unless essential
checkRd: (-1) Context.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) psyfun.boot.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) psyfun.boot.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) genotype_data.Rd:7: Escaped LaTeX specials: \_
checkRd: (-1) genotype_data.Rd:18: Escaped LaTeX specials: \_
checkRd: (-1) phenotype_data.Rd:15: Escaped LaTeX specials: \_
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
Error in readRDS(mapfile) : error reading from connection
During startup - Warning message:
package "methods" in options("defaultPackages") was not found
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
checkRd: (-1) F.huggins.estim.Rd:199: Escaped LaTeX specials: \$ \$
checkRd: (-1) F.huggins.estim.Rd:205: Escaped LaTeX specials: \$
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checkRd: (-1) F.huggins.estim.Rd:215: Escaped LaTeX specials: \$
checkRd: (-1) lines.cjs.Rd:15: Escaped LaTeX specials: \$
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    R      1.9Mb
    data   4.5Mb
    libs   1.2Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   4.7Mb
'LazyData' is specified without a 'data' directory
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    R   5.8Mb
'LazyData' is specified without a 'data' directory
checkRd: (-1) ml_g.Rd:47: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) ms_sev.Rd:31: Escaped LaTeX specials: \_
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'pca.plot.wrap':
  'lda.plot.wrap.1'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
checkRd: (-1) mkjnw.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) mkjnw.Rd:6: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) MultBiplotR-package.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) MultBiplotR-package.Rd:52: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
checkRd: (-1) print.multcompLetters.Rd:20: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
installed size is 12.0Mb
  sub-directories of 1Mb or more:
    doc    4.0Mb
    libs   6.6Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'rrelaxiv'
checkRd: (-1) mPhen.defineOptions.Rd:4: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'slp'
Specified C++11: please drop specification unless essential
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Found the following significant warnings:
  d:\rtools43\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\12.2.0\include\emmintrin.h:124:22: warning: array subscript 1 is outside array bounds of 'double [2]' [-Warray-bounds]
See 'd:/Rcompile/CRANpkg/local/4.3/mumm.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
installed size is 12.9Mb
  sub-directories of 1Mb or more:
    libs  12.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) bal.Rd:156: Escaped LaTeX specials: \&
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/mvMORPH.Rcheck/00install.out' for details.
checkRd: (-1) pkb.Rd:14: Escaped LaTeX specials: \# \# \#
'LazyData' is specified without a 'data' directory
checkRd: (-1) mvr.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'mvMORPH'
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Package which this enhances but not available for checking: 'asreml'
installed size is 16.2Mb
  sub-directories of 1Mb or more:
    extdata  16.2Mb
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 're2r'
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data     1.9Mb
    libs     2.4Mb
    models   1.1Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'spatialClust'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Version (2018-01-22)
    Version  (2017-08-22)
    Version
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   3.9Mb
    doc    1.7Mb
Running 'testthat.R' [5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > test_check("nat.utils")
  Loading required package: nat.utils
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 73 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • touch only supported on unix platforms (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-fsutils.r:79:3'): common_path works ──────────────────────────
  common_path(c("/a", "/b"), normalise = T) not equal to np("/").
  1/1 mismatches
  x[1]: "d:/"
  y[1]: "D:/"
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 73 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    data   9.4Mb
installed size is 14.7Mb
  sub-directories of 1Mb or more:
    libs  14.4Mb
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 're2r'
Error(s) in re-building vignettes:
--- re-building 'v1-capture-first.Rmd' using knitr
Warning in file(con, "r") :
  cannot open file 'cript src="https://cdn.jsdelivr.net/npm/prismjs@1.29.0/components/prism-core.min.js" defer></script>
<cript src="https://cdn.jsdelivr.net/npm/prismjs@1.29.0/components/prism-core.min.js" defer></script>
<': No such file or directory
Error: processing vignette 'v1-capture-first.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'v1-capture-first.Rmd'

--- re-building 'v2-capture-all.Rmd' using knitr
--- finished re-building 'v2-capture-all.Rmd'

--- re-building 'v3-capture-melt.Rmd' using knitr
--- finished re-building 'v3-capture-melt.Rmd'

--- re-building 'v4-comparisons.Rmd' using knitr
--- finished re-building 'v4-comparisons.Rmd'

SUMMARY: processing the following file failed:
  'v1-capture-first.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  6.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc    2.5Mb
    libs   1.5Mb
':::' call which should be '::': 'lhs:::maximinLHS'
  See the note in ?`:::` about the use of this operator.
checkRd: (-1) exportToTSPlibFormat.Rd:32: Escaped LaTeX specials: \_
checkRd: (-1) exportToTSPlibFormat.Rd:32: Escaped LaTeX specials: \_ \_
checkRd: (-1) makeNetwork.Rd:31: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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checkRd: (-1) NetworkChange.Rd:163: Escaped LaTeX specials: \&
checkRd: (-1) NetworkChangeRobust.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) NetworkStatic.Rd:142: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is 13.8Mb
  sub-directories of 1Mb or more:
    libs  13.1Mb
GNU make is a SystemRequirements.
installed size is  7.7Mb
  sub-directories of 1Mb or more:
    data   7.6Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) graphresU.fun.Rd:72: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    extdata   6.8Mb
'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc   4.0Mb
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  d:\rtools43\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\12.2.0\include\c++\bits\stl_algobase.h:431:30: warning: 'void* __builtin_memmove(void*, const void*, long long unsigned int)' offset 0 is out of the bounds [0, 0] [-Warray-bounds]
  d:\rtools43\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\12.2.0\include\c++\bits\stl_algobase.h:922:18: warning: 'void* __builtin_memset(void*, int, long long unsigned int)' writing 8 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
See 'd:/Rcompile/CRANpkg/local/4.3/nimble.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
Specified C++11: please drop specification unless essential
installed size is 16.5Mb
  sub-directories of 1Mb or more:
    CppCode   1.7Mb
    R         6.3Mb
    include   5.8Mb
    libs      1.2Mb
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc       4.0Mb
    extdata   1.8Mb
Package which this enhances but not available for checking: 'jpndistrict'
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) Dmean.Rd:62: Escaped LaTeX specials: \&
checkRd: (-1) Dvar.Rd:63: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) nltm.control.Rd:29: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    doc   7.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Other ideas
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'hurricaneexposuredata'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'RPANDA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Running 'spelling.R' [0s]
  Running 'testthat.R' [34s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(npi)
  > library(httptest)
  > library(purrr)
  
  Attaching package: 'purrr'
  
  The following object is masked from 'package:testthat':
  
      is_null
  
  > library(mockery)
  > library(checkmate)
  > 
  > test_check("npi")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 74 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-api.R:234:3'): The initial message accurately reports the requested number of records ──
  Error in `curl::curl_fetch_memory(url, handle = handle)`: Timeout was reached: [npiregistry.cms.hhs.gov] Resolving timed out after 10001 milliseconds
  Backtrace:
       ▆
    1. ├─testthat::expect_message(...) at test-api.R:234:2
    2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. └─npi::npi_search(city = "Atlanta", limit = 1)
    7.   └─npi:::npi_process_results(...)
    8.     └─npi:::npi_control_requests(params, user_n)
    9.       └─npi:::npi_get_results(results = results, query = query)
   10.         └─npi:::npi_get(npi_url(), query = ...)
   11.           └─npi:::npi_api("GET", url, ...)
   12.             └─httr (local) FUN(url, ..., config = c(npi_config(), config))
   13.               └─httr:::request_perform(req, hu$handle$handle)
   14.                 ├─httr:::request_fetch(req$output, req$url, handle)
   15.                 └─httr:::request_fetch.write_memory(req$output, req$url, handle)
   16.                   └─curl::curl_fetch_memory(url, handle = handle)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 74 ]
  Error: Test failures
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'advanced-use.Rmd' using rmarkdown
Quitting from lines 39-46 (advanced-use.Rmd) 
Error: processing vignette 'advanced-use.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached: [npiregistry.cms.hhs.gov] Resolving timed out after 10002 milliseconds
--- failed re-building 'advanced-use.Rmd'

--- re-building 'npi.Rmd' using rmarkdown
Quitting from lines 34-36 (npi.Rmd) 
Error: processing vignette 'npi.Rmd' failed with diagnostics:
Timeout was reached: [npiregistry.cms.hhs.gov] Resolving timed out after 10002 milliseconds
--- failed re-building 'npi.Rmd'

SUMMARY: processing the following files failed:
  'advanced-use.Rmd' 'npi.Rmd'

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) prepareplot.Rd:64: Escaped LaTeX specials: \#
checkRd: (-1) prepareplot.Rd:68: Escaped LaTeX specials: \#
checkRd: (-1) nppbib.Rd:28: Escaped LaTeX specials: \#
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) Ardechedata.Rd:18: Escaped LaTeX specials: \_
checkRd: (-1) nsRFA-package.Rd:231: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
    libs   1.1Mb
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc    5.2Mb
    libs   1.6Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/OasisR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    R         1.5Mb
    doc       5.7Mb
    extdata   1.5Mb
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    R            1.5Mb
    test_files   4.2Mb
installed size is 10.5Mb
  sub-directories of 1Mb or more:
    R      2.6Mb
    data   1.0Mb
    doc    2.0Mb
    help   3.0Mb
    libs   1.3Mb
Specified C++11: please drop specification unless essential
':::' call which should be '::': 'DBItest:::get_default_context'
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: 'DBItest:::connect'
  See the note in ?`:::` about the use of this operator.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   4.1Mb
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  print_address.c:11:27: warning: format '%p' expects argument of type 'void *', but argument 4 has type 'SEXP' {aka 'struct SEXPREC *'} [-Wformat=]
See 'd:/Rcompile/CRANpkg/local/4.3/oops.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/OpenCL.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'unix'
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
installed size is 23.4Mb
  sub-directories of 1Mb or more:
    libs   13.1Mb
    share  10.2Mb
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'unary_ops':
  'log10.ProcessNode' 'log10.ProcessGraphParameter'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc    2.5Mb
    libs   1.6Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 16.1Mb
  sub-directories of 1Mb or more:
    R        2.6Mb
    data     1.4Mb
    libs     4.9Mb
    models   4.8Mb
GNU make is a SystemRequirements.
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    java     1.2Mb
    models   6.0Mb
Package suggested but not available for checking: 'openNLPmodels.en'
Found the following significant warnings:
  Warning: replacing previous import 'GPArotation::equamax' by 'psych::equamax' when loading 'OpenRepGrid'
  Warning: replacing previous import 'GPArotation::varimin' by 'psych::varimin' when loading 'OpenRepGrid'
See 'd:/Rcompile/CRANpkg/local/4.3/OpenRepGrid.Rcheck/00install.out' for details.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc    2.6Mb
    libs   2.8Mb
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    extdata   8.9Mb
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc       1.4Mb
    extdata   1.3Mb
    libs      1.4Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    extdata   2.1Mb
    libs      1.4Mb
Problems with news in 'NEWS.md':
No news entries found.
Package suggested but not available for checking: 'gurobi'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Package which this enhances but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'format_value':
  'format_value.default'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rrelaxiv'
Package suggested but not available for checking: 'gurobi'
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: 'ROracle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Specified C++11: please drop specification unless essential
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   5.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R       1.0Mb
    nifti   3.8Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    doc    4.8Mb
    libs   1.4Mb
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'Rcplex'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
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Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Changes
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installed size is 20.2Mb
  sub-directories of 1Mb or more:
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Package which this enhances but not available for checking: 'CorShrink'
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S3 methods shown with full name in documentation object 'pamr-internal':
  'print.nsc' 'print.nsccv'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
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Error(s) in re-building vignettes:
--- re-building 'PS1_Cat.Rmd' using rmarkdown
Quitting from lines 44-50 (PS1_Cat.Rmd) 
Error: processing vignette 'PS1_Cat.Rmd' failed with diagnostics:
Not Found (HTTP 404).
--- failed re-building 'PS1_Cat.Rmd'

--- re-building 'PS1_Images.Rmd' using rmarkdown
--- finished re-building 'PS1_Images.Rmd'

SUMMARY: processing the following file failed:
  'PS1_Cat.Rmd'

Error: Vignette re-building failed.
Execution halted
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Malformed Description field: should contain one or more complete sentences.
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Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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S3 methods shown with full name in documentation object 'vec_cast.partial_time':
  'vec_cast.partial_time'

S3 methods shown with full name in documentation object 'vec_cast.timespan':
  'vec_cast.timespan'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'ctree.Rnw' using 'UTF-8'... [10s] NOTE
differences from 'ctree.Rout.save'
1408a1409,1412
> Deviance Residuals: 
>     Min       1Q   Median       3Q      Max  
> -45.801  -11.208   -1.049   10.903   53.615  
> 
  'partykit.Rnw'... [3s] OK
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GNU make is a SystemRequirements.
installed size is  5.3Mb
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S3 methods shown with full name in documentation object 'ped':
  'ped.markerNames'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
installed size is  5.4Mb
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    doc    1.1Mb
Malformed Description field: should contain one or more complete sentences.
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No news entries found.
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installed size is 11.3Mb
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GNU make is a SystemRequirements.
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installed size is 19.8Mb
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S3 methods shown with full name in documentation object 'format.relation':
  'format.relation'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
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Running examples in 'penDvine-Ex.R' failed
The error most likely occurred in:

> ### Name: penDvine-package
> ### Title: The package 'penDvine' offers routines for estimating densities
> ###   and copula distribution of D-vines.
> ### Aliases: penDvine-package
> 
> ### ** Examples
> 
> #This examples describes the estimation of a D-vine to winddata,
> #available in this package. After the margins are prepared, we estimate a
> #D-vine using B-splines with 9 (K+1) marginal knots and penalizing second (m=2)
> #order differences (pen=1) of the basis coefficients.
> 
> data(Winddata)
> ex.data<-Winddata[c(1:100),c(1:4)] #examplary subdata for fast calculation
> wind.example<-Dvine(ex.data,K=7,pen=1,lambda=100,order.Dvine=FALSE,base="B-spline",m=2,cores=2)
>   
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
Error: connections left open:
	<-CRANWIN2.fb05.statistik.uni-dortmund.de:11575 (sockconn)
	<-CRANWIN2.fb05.statistik.uni-dortmund.de:11575 (sockconn)
Execution halted
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installed size is  7.6Mb
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    R      4.4Mb
    data   3.1Mb
Malformed Description field: should contain one or more complete sentences.
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Fixed issues
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'LazyData' is specified without a 'data' directory
Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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S3 methods shown with full name in documentation object 'qr.solve_exact':
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The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
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S3 methods shown with full name in documentation object 'midpoint.root':
  'midpoint.root'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
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Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(piecemaker)
  > 
  > test_check("piecemaker")
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 23 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-clean.R:33:3'): Can validate UTF8 ──────────────────────────────
  <encoding_error/rlang_error/error/condition>
  Error in `FUN(X[[i]], ...)`: Unsupported string type in <fa><b4><bf><bf><9f>
  Backtrace:
       ▆
    1. ├─testthat::expect_error(...) at test-clean.R:33:2
    2. │ └─testthat:::expect_condition_matching(...)
    3. │   └─testthat:::quasi_capture(...)
    4. │     ├─testthat (local) .capture(...)
    5. │     │ └─base::withCallingHandlers(...)
    6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. └─piecemaker::validate_utf8(bad_character)
    8.   └─base::vapply(...)
    9.     └─piecemaker (local) FUN(X[[i]], ...)
   10.       └─rlang::abort(message = error_message, class = "encoding_error")
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 23 ]
  Error: Test failures
  Execution halted
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simulate.gfit: no visible global function definition for 'rescale'
Undefined global functions or variables:
  rescale
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    shinyApp   5.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Packages suggested but not available for checking: 'gurobi', 'Rcplex'
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc    3.3Mb
    libs   1.3Mb
Packages suggested but not available for checking:
  'gurobi', 'rcbc', 'cplexAPI'
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    doc    4.5Mb
    libs   1.6Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    doc           8.8Mb
    htmlwidgets   2.5Mb
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot.profileModel.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) profileModel.Rd:277: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data      1.7Mb
    extdata   1.2Mb
    libs      1.2Mb
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/proj4.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    libs   6.2Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'rdt'
Package suggested but not available for checking: 'approxOT'
Running examples in 'provenance-Ex.R' failed
The error most likely occurred in:

> ### Name: SNSM
> ### Title: varietal data example
> ### Aliases: SNSM
> 
> ### ** Examples
> 
> plot(MDS(SNSM$tit))
[1] "Constructing the dissimilarity matrix..."
Error in loadNamespace(x) : there is no package called 'approxOT'
Calls: plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package suggested but not available for checking: 'rdt'
Package suggested but not available for checking: 'rdt'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rdt'
Specified C++11: please drop specification unless essential
installed size is  8.4Mb
  sub-directories of 1Mb or more:
    libs   8.2Mb
Running examples in 'prt-Ex.R' failed
The error most likely occurred in:

> ### Name: print.prt
> ### Title: Printing prt
> ### Aliases: print.prt format.prt trunc_dt
> 
> ### ** Examples
> 
> cars <- as_prt(mtcars)
> 
> print(cars)
Error:
! `colonnade()` was deprecated in pillar 1.9.0 and is now defunct.
ℹ Please use `tbl_format_setup()` instead.
Backtrace:
     ▆
  1. ├─base::print(cars)
  2. └─prt:::print.prt(cars)
  3.   ├─prt:::cat_line(format(x, ..., n = n, width = width, max_extra_cols = max_extra_cols))
  4.   │ ├─base::trimws(paste0(...), "right")
  5.   │ │ └─base (local) mysub(paste0(whitespace, "+$"), x)
  6.   │ │   └─base::sub(re, "", x, perl = TRUE)
  7.   │ │     └─base::is.factor(x)
  8.   │ └─base::paste0(...)
  9.   ├─base::format(x, ..., n = n, width = width, max_extra_cols = max_extra_cols)
 10.   └─prt:::format.prt(x, ..., n = n, width = width, max_extra_cols = max_extra_cols)
 11.     ├─base::format(trunc_dt(x, n = n, width = width, max_extra_cols = max_extra_cols))
 12.     └─prt::trunc_dt(x, n = n, width = width, max_extra_cols = max_extra_cols)
 13.       └─prt:::shrink_dt(df, rows)
 14.         └─pillar::colonnade(df, has_row_id = FALSE)
 15.           └─lifecycle::deprecate_stop("1.9.0", "pillar::colonnade()", "pillar::tbl_format_setup()")
 16.             └─lifecycle:::deprecate_stop0(msg)
 17.               └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'prt.Rmd' using rmarkdown
Quitting from lines 35-37 (prt.Rmd) 
Error: processing vignette 'prt.Rmd' failed with diagnostics:
`colonnade()` was deprecated in pillar 1.9.0 and is now defunct.
ℹ Please use `tbl_format_setup()` instead.
--- failed re-building 'prt.Rmd'

SUMMARY: processing the following file failed:
  'prt.Rmd'

Error: Vignette re-building failed.
Execution halted
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) esa.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) meta_varcov.Rd:9: Escaped LaTeX specials: \&
checkRd: (-1) meta_varcov.Rd:120: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    R          1.2Mb
    doc        4.0Mb
    examples   2.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) Ch05-detail.Rd:23: Escaped LaTeX specials: \#
checkRd: (-1) Ch05-detail.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) Ch05-detail.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) Ch05-detail.Rd:31: Escaped LaTeX specials: \#
checkRd: (-1) Ch05-detail.Rd:32: Escaped LaTeX specials: \#
checkRd: (-1) Ch0C-plot.cpd.PwrGSD.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) aid_st2.Rd:6: Escaped LaTeX specials: \&
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   7.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    gui          1.6Mb
    staticdocs   3.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'internals':
  'format.perc'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
installed size is 26.2Mb
  sub-directories of 1Mb or more:
    libs  25.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc   5.2Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'internals':
  'plot.piqr2'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
S3 methods shown with full name in documentation object 'internals':
  'predict.iqrL.internal'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is 10.9Mb
  sub-directories of 1Mb or more:
    data  10.8Mb
installed size is 12.6Mb
  sub-directories of 1Mb or more:
    data  12.5Mb
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc   4.4Mb
'LazyData' is specified without a 'data' directory
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    extdata   3.3Mb
    libs      2.6Mb
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    extdata   3.0Mb
    libs      1.0Mb
Specified C++11: please drop specification unless essential
installed size is 10.2Mb
  sub-directories of 1Mb or more:
    R         1.7Mb
    contrib   3.7Mb
    doc       2.9Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) GRI.Rd:3: Escaped LaTeX specials: \&
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/quantdr.Rcheck/00install.out' for details.
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   3.8Mb
    libs   1.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/quickmatch.Rcheck/00install.out' for details.
Packages suggested but not available for checking: 'fastshp', 'visualTest'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc         2.9Mb
    shiny_app   1.4Mb
Specified C++11: please drop specification unless essential
checkRd: (-1) qwraps2.Rd:73: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ReGenesees'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    java   5.0Mb
Package suggested but not available for checking: 'RDCOMClient'
'library' or 'require' call to 'RDCOMClient' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'rcom', 'RDCOMClient'
'library' or 'require' calls in package code:
  'RDCOMClient' 'rcom'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package suggested but not available for checking: 'BRugs'
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    doc   9.9Mb
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    doc           5.3Mb
    htmlwidgets   1.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error: package or namespace load failed for 'rabhit' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/S4Vectors/libs/x64/S4Vectors.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", ms
Execution halted
Error: package 'ggplot2' could not be loaded
Call sequence:
3: stop(gettextf("package %s could not be loaded", sQuote(pkg)), 
       call. = FALSE, domain = NA)
2: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
'LazyData' is specified without a 'data' directory
installed size is 10.6Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    doc    6.6Mb
    libs   1.1Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc   5.5Mb
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
CreateThread failed
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpWWEJeX\file2b6d07e235716'
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data      2.2Mb
    extdata   1.4Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:
--- re-building 'ragtop_convertibles_in_r.Rmd' using rmarkdown

Entschuldigung, aber "C:\Program Files\MiKTeX\miktex\bin\x64\pdftex.exe" schlug fehl.

Die Log-Datei enthält hoffentlich alle Informationen, um MiKTeX wieder in Gang zu bringen.

  C:\Users\CRAN\AppData\Local\MiKTeX\miktex\log\pdftex.log
!!! Error: pdfTeX run failed with value 1!
Warning in system(command) :
  'CreateProcess' failed to run 'C:\PROGRA~1\Pandoc\pandoc.exe +RTS -K512m -RTS ragtop_convertibles_in_r.knit.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandocfbb07fb6894.tex --lua-filter "D:\RCompile\CRANpkg\lib\4.3\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.3\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --table-of-contents --toc-depth 2 --highlight-style tango --pdf-engine pdflatex --variable graphics --incl
Error: processing vignette 'ragtop_convertibles_in_r.Rmd' failed with diagnostics:
pandoc document conversion failed with error 127
--- failed re-building 'ragtop_convertibles_in_r.Rmd'

SUMMARY: processing the following file failed:
  'ragtop_convertibles_in_r.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack



See 'Writing portable packages' in the 'Writing R Extensions' manual.
Error(s) in re-building vignettes:
--- re-building 'algorithmes.Rmd' using rmarkdown
--- finished re-building 'algorithmes.Rmd'

--- re-building 'algorithms_en.Rmd' using rmarkdown
--- finished re-building 'algorithms_en.Rmd'

--- re-building 'introduction_en.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'introduction_en.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'introduction_en.Rmd'

--- re-building 'introduction_usage.Rmd' using rmarkdown
--- finished re-building 'introduction_usage.Rmd'

SUMMARY: processing the following file failed:
  'introduction_en.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 10.9Mb
  sub-directories of 1Mb or more:
    htmlwidgets  10.0Mb
installed size is 11.6Mb
  sub-directories of 1Mb or more:
    api           3.2Mb
    htmlwidgets   6.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'randomForestSRC-Ex.R' failed
The error most likely occurred in:

> ### Name: wine
> ### Title: White Wine Quality Data
> ### Aliases: wine
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## load wine and convert to a multiclass problem
> data(wine, package = "randomForestSRC")
Warning in readChar(con, 5L, useBytes = TRUE) :
  lzma decoder needed more memory
Error in load(zfile, envir = tmp_env) : empty (zero-byte) input file
Calls: data -> load
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problem found in 'randomizeR-package.Rd'
'LazyData' is specified without a 'data' directory
Running examples in 'randomUniformForest-Ex.R' failed
The error most likely occurred in:

> ### Name: biasVarCov
> ### Title: Bias-Variance-Covariance Decomposition
> ### Aliases: biasVarCov
> 
> ### ** Examples
> 
> n = 100;  p = 10
> # simulate 'p' gaussian vectors with random parameters between -10 and 10.
> X <- simulationData(n,p)
> 
> # make a rule to create response vector
> epsilon1 = runif(n,-1,1)
> epsilon2 = runif(n,-1,1)
> rule = 2*(X[,1]*X[,2] + X[,3]*X[,4]) + epsilon1*X[,5] + epsilon2*X[,6]
> 
> # Classification
> Y <- as.factor(ifelse(rule > mean(rule), 1, 0))
> 
> # define random train and test sample of (X,Y)
> trainTestIdx <- cut(sample(1:nrow(X), nrow(X)), 2, labels= FALSE)
> 
> # training sample
> Xtrain = X[trainTestIdx == 1,]
> Ytrain = Y[trainTestIdx == 1]
> 
> # test sample
> Xtest = X[trainTestIdx == 2,]
> Ytest = Y[trainTestIdx == 2]
> 
> # learning model
> synthDataset.ruf <- randomUniformForest(Xtrain, Ytrain, threads = 1, 
+ ntree = 20, BreimanBounds = FALSE)
Labels 0 1 have been converted to 1 2 for ease of computation and will be used internally as a replacement.
Error in { : task 1 failed - "could not find function "options.filter""
Calls: randomUniformForest ... randomUniformForest.default -> randomUniformForestCore -> %dopar% -> <Anonymous>
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Error: unable to load R code in package 'sp'
Call sequence:
10: stop(gettextf("unable to load R code in package %s", sQuote(package)), 
        call. = FALSE, domain = NA)
9: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
8: asNamespace(ns)
7: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Case_studies_Valcu_et_al_2012.Rmd' using rmarkdown
Warning: call dbDisconnect() when finished working with a connection
--- finished re-building 'Case_studies_Valcu_et_al_2012.Rmd'

--- re-building 'rangeMapper.Rmd' using rmarkdown
Quitting from lines 78-83 (rangeMapper.Rmd) 
Error: processing vignette 'rangeMapper.Rmd' failed with diagnostics:
Failed to allocate TMP or UGRP or they weren't cache line aligned: nth=1
--- failed re-building 'rangeMapper.Rmd'

SUMMARY: processing the following file failed:
  'rangeMapper.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
Error: cannot allocate vector of size 3.0 Mb
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate memory for pointer stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
Fatal error: couldn't allocate node stack
Error: cannot allocate vector of size 220 Kb
Call sequence:
15: (function (n) 
    {
        if (existsInFrame(n, envenv)) 
            envenv[[n]]
        else {
            e <- mkenv()
            envenv[[n]] <- e
            key <- env[[n]]
            ekey <- if (is.list(key)) 
                key$eagerKey
            else key
            data <- lazyLoadDBfetch(ekey, datafile, compressed, envhook)
            parent.env(e) <- if (!is.null(data$enclos)) 
                data$enclos
            else emptyenv()
            list2env(data$bindings, e)
            if (!is.null(data$attributes)) 
                attributes(e) <- data$attributes
            if (!is.null(data$isS4) && data$isS4) 
                .Internal(setS4Object(e, TRUE, TRUE))
            if (is.list(key)) {
                expr <- quote(lazyLoadDBfetch(KEY, datafile, compressed, 
                    envhook))
                .Internal(makeLazy(names(key$lazyKeys), key$lazyKeys, 
                    expr, parent.env
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpYr2fix\file221a017bb72d3'
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpqo9K6l\file2f5c8792d370d'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpqo9K6l\file2f5c8792d370d'
Package suggested but not available for checking: 'gurobi'
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    doc       1.7Mb
    extdata   4.1Mb
    libs      1.4Mb
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp0iAfgf\file18de417be4639'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp0iAfgf\file18de417be4639'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp0iAfgf\file18de417be4639'
'LazyData' is specified without a 'data' directory
Error: package 'vegan' could not be loaded
Call sequence:
3: stop(gettextf("package %s could not be loaded", sQuote(pkg)), 
       call. = FALSE, domain = NA)
2: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Error: package or namespace load failed for 'rareNMtests' in loadNamespace(package, lib.loc):
 there is no package called 'rareNMtests'
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain = NA)
       else stop(msg, call. = FALSE, domain = NA)
   })
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In doTryCatch(return(expr), name, parentenv, handler) :
  restarting interrupted promise evaluation
3: package 'grDevices' in options("defaultPackages") was not found 
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Warning message:
In Sys.info() : unpaired surrogate Unicode point dfd1
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Error(s) in re-building vignettes:
--- re-building 'rasterdiv_advanced_multidimension_Rao.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'rasterdiv_advanced_multidimension_Rao.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'rasterdiv_advanced_multidimension_Rao.Rmd'

--- re-building 'rasterdiv_area_based_Rao.Rmd' using rmarkdown
Quitting from lines 30-31 (rasterdiv_area_based_Rao.Rmd) 
Warning in dev.off(dv) : processing of the plot ran out of memory
Error: processing vignette 'rasterdiv_area_based_Rao.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'is.factor': cannot allocate vector of size 75.4 Mb
--- failed re-building 'rasterdiv_area_based_Rao.Rmd'


SUMMARY: processing the following files failed:
  'rasterdiv_advanced_multidimension_Rao.Rmd'
  'rasterdiv_area_based_Rao.Rmd' 'rasterdiv_basics.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpeIZjXF\filebef4799f4752'
During startup - Warning message:
package 'graphics' in options("defaultPackages") was not found 
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    R      3.1Mb
    libs   1.4Mb
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack

All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Package required but not available: 'mvMORPH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Warning in read.delim(file, header = TRUE, comment.char = "#", colClasses = c(rep.int("character",  :
  internal error -4 in R_decompress1
Warning in exists(name, inlineHandlers, inherits = FALSE) :
  restarting interrupted promise evaluation
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Fatal error: couldn't allocate node stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Found the following possibly unsafe calls:
Fatal error: couldn't allocate memory for pointer stack
During startup - Warning message:
package 'utils' in options("defaultPackages") was not found 
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
    etc    1.9Mb
    po     1.2Mb
Error in readRDS(ffile) : error reading from connection
Calls: getNamespace -> loadNamespace -> readRDS
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
checkRd: (-1) acquireAuditData.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) rattle.Rd:44: Escaped LaTeX specials: \_
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    data   3.9Mb
    libs   1.5Mb
Packages required but not available: 'raveio', 'threeBrain'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
CreateThread failed
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/ravetools.Rcheck/00install.out' for details.
Error in readRDS(mapfile) : error reading from connection
Execution halted
Running massageExamples to create 'rawKS-Ex.R' failed
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
 NONE
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/rayimage.Rcheck/00install.out' for details.
Packages required but not available: 'rayrender', 'rayvertex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rayimage'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rayimage'

Package suggested but not available for checking: 'rayrender'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
During startup - Warning messages:
1: package "methods" in options("defaultPackages") was not found 
2: In doTryCatch(return(expr), name, parentenv, handler) :
  restarting interrupted promise evaluation
Package required but not available: 'rayimage'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Specified C++11: please drop specification unless essential
Running examples in 'rbcb-Ex.R' failed
The error occurred in:
Running 'testthat.R' [0s]
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Found the following significant warnings:
  d:\rtools43\x86_64-w64-mingw32.static.posix\include\psdk_inc\intrin-impl.h:838:1: warning: array subscript 0 is outside array bounds of 'long long unsigned int[0]' [-Warray-bounds]
See 'd:/Rcompile/CRANpkg/local/4.3/Rbeast.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
Error: package or namespace load failed for 'rbedrock' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), do
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc    1.8Mb
    libs   2.1Mb
GNU make is a SystemRequirements.
S3 methods shown with full name in documentation object 'fitted.values.backf':
  'fitted.values.backf'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error: package or namespace load failed for 'rbgm' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rbi.helpers)
  Loading required package: rbi
  Error: package or namespace load failed for 'rbi' in inDL(x, as.logical(local), as.logical(now), ...):
   unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/processx/libs/x64/processx.dll':
    LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
  
  Error: package 'rbi' could not be loaded
  Execution halted
During startup - Warning messages:
1: In (function (n)  : internal error -4 in R_decompress1
2: package "methods" in options("defaultPackages") was not found 
3: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  restarting interrupted promise evaluation
4: package 'datasets' in options("defaultPackages") was not found 
5: package 'utils' in options("defaultPackages") was not found 
6: package 'grDevices' in options("defaultPackages") was not found 
7: package 'graphics' in options("defaultPackages") was not found 
8: package 'stats' in options("defaultPackages") was not found 
9: package 'methods' in options("defaultPackages") was not found
During startup - Warning messages:
1: In (function (n)  : internal error -4 in R_decompress1
2: package "methods" in options("defaultPackages") was not found
Error(s) in re-building vignettes:
--- re-building 'rbioapi.Rmd' using rmarkdown
--- finished re-building 'rbioapi.Rmd'

--- re-building 'rbioapi_do_enrich.Rmd' using rmarkdown
--- finished re-building 'rbioapi_do_enrich.Rmd'

--- re-building 'rbioapi_enrichr.Rmd' using rmarkdown
--- finished re-building 'rbioapi_enrichr.Rmd'

--- re-building 'rbioapi_jaspar.Rmd' using rmarkdown
--- finished re-building 'rbioapi_jaspar.Rmd'

--- re-building 'rbioapi_mieaa.Rmd' using rmarkdown
--- finished re-building 'rbioapi_mieaa.Rmd'

--- re-building 'rbioapi_panther.Rmd' using rmarkdown
Error: processing vignette 'rbioapi_panther.Rmd' failed with diagnostics:
could not find function "is_cran_check"
--- failed re-building 'rbioapi_panther.Rmd'

--- re-building 'rbioapi_reactome.Rmd' using rmarkdown
Warning in dev.off(dv) : processing of the plot ran out of memory
--- finished re-building 'rbioapi_reactome.Rmd'

--- re-building 'rbioapi_string.Rmd' using rmarkdown
--- finished re-building 'rbioapi_string.Rmd'

--- re-building 'rbioapi_uniprot.Rmd' using rmarkdown
--- finished re-building 'rbioapi_uniprot.Rmd'

SUMMARY: processing the following file failed:
  'rbioapi_panther.Rmd'

Error: Vignette re-building failed.
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpchB0kY\file1ce05c2a6acb'
CreateThread failed
Specified C++11: please drop specification unless essential
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Running examples in 'rbiom-Ex.R' failed
The error most likely occurred in:

> ### Name: subset
> ### Title: Subset samples using the BIOM object's metadata
> ### Aliases: subset subset.BIOM
> 
> ### ** Examples
> 
>     library(rbiom)
>     
>     infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
>     biom <- read.biom(infile)
Datei nicht gefunden
Warning in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait,  :
  running command 'C:\Windows\system32\cmd.exe /c dir' had status 1
Error in system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait,  : 
  'CreateProcess' failed to run 'C:\Windows\system32\cmd.exe /c dir'
Calls: read.biom ... Sys.readlink2 -> sapply -> lapply -> FUN -> shell -> system
Execution halted
Error: internal compression error -4 in PDF_endpage
Fatal error: error during cleanup
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Warning message:
In Sys.info() : unpaired surrogate Unicode point dfd1
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problem found in 'rbi-package.Rd'
Fatal error: couldn't allocate memory for pointer stack
Fatal error: couldn't allocate node stack
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd.rsp' using rsp
Warning in parseRepos(sets = repos, where = where, fallback = fallback,  :
  Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'https://cran.r-project.org'


processing file: D:/RCompile/CRANpkg/local/4.3/rbi.Rcheck/vign_test/rbi/vignettes/introduction.Rmd
output file: introduction.md

Error: processing vignette 'introduction.Rmd.rsp' failed with diagnostics:
'CreateProcess' failed to run 'C:\Windows\system32\cmd.exe /c dir'
--- failed re-building 'introduction.Rmd.rsp'

SUMMARY: processing the following file failed:
  'introduction.Rmd.rsp'

Error: Vignette re-building failed.
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpGAmUbw\fileb83c14415c1'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/httpuv/libs/x64/httpuv.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
8: inDL(x, as.logical(local), as.logical(now), ...)
7: dyn.load(file, DLLpath = DLLpath, ...)
6: library.dynam(lib, package, package.lib)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp2BylyX\file1cb6835e794f'
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problem found in 'rbmi-package.Rd'
GNU make is a SystemRequirements.
Running examples in 'rbmi-Ex.R' failed
The error occurred in:


R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "rbmi"
> source(file.path(R.home("share"), "R", "examples-header.R"))
Error in grDevices::pdf(paste(pkgname, "-Ex.pdf", sep = ""), encoding = "ISOLatin1") : 
  unable to allocate memory (in GEregister)
Calls: source -> withVisible -> eval -> eval -> <Anonymous>
Execution halted
checkRd: (-1) mn4joint1condi.Rd:39: Escaped LaTeX specials: \$
checkRd: (-1) mn4joint1condi.Rd:40: Escaped LaTeX specials: \$
checkRd: (-1) objets.Rd:66: Escaped LaTeX specials: \#
Running examples in 'rbmn-Ex.R' failed
The error most likely occurred in:

> ### Name: body composition
> ### Title: Body Composition Variables and Covariables
> ### Aliases: boco
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> # load the data and build the correct network from the model string.
> data(boco);
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/tools/libs/x64/tools.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: data -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpqUNtCM\filebeb85e8e776a'
'LazyData' is specified without a 'data' directory
Error: object '#HAS_DUPLICATE_CLASS_NAMES' not found
Call sequence:
13: get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable)
12: .duplicateClassesExist()
11: .newOrMultipleMethod(obj, what, table)
10: .mergeMethodsTable(generic, mtable, tt, attach)
9: .updateMethodsInTable(fdef, where, attach)
8: methods::cacheMetaData(ns, TRUE, ns)
7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
6: asNamespace(ns)
5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
Running examples in 'rbtc-Ex.R' failed
The error occurred in:
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'rcaiman-Ex.R' failed
The error most likely occurred in:

> ### Name: apply_thr
> ### Title: Apply threshold
> ### Aliases: apply_thr
> 
> ### ** Examples
> 
> r <- read_caim()
Error: std::bad_alloc
Execution halted
S3 methods shown with full name in documentation object 'export.default':
  'export.default'

S3 methods shown with full name in documentation object 'export.listpoly':
  'export.listpoly'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running examples in 'rcanvec-Ex.R' failed
The error occurred in:
Error: package or namespace load failed for 'rcarbon' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/spatstat.sparse/libs/x64/spatstat.sparse.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpemqzBi\file25454629a525c'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rrelaxiv'
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found
Fatal error: couldn't allocate node stack

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Running massageExamples to create 'rcbalance-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpyaiguf\file1d528d8a5662'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'rrelaxiv'
Running examples in 'rcbsubset-Ex.R' failed
The error occurred in:


R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "rcbsubset"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> options(pager = "console")
> library('rcbsubset')
Loading required package: MASS
Warning in FUN(X[[i]], ...) : internal error 5 in R_decompress3
Error in FUN(X[[i]], ...) : 
  lazy-load database 'D:/RCompile/recent/R/library/datasets/data/Rdata.rdb' is corrupt
Calls: library ... library -> checkConflicts -> same.isFn -> vapply -> FUN
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
During startup - Warning messages:
1: In .osVersion() : internal error -4 in R_decompress1
2: package 'utils' in options("defaultPackages") was not found
Running 'allfaces.R' [1s]
  Comparing 'allfaces.Rout' to 'allfaces.Rout.save' ... OK
  Running 'arith.R' [1s]
  Comparing 'arith.Rout' to 'arith.Rout.save' ... OK
  Running 'bar-gmp.R' [1s]
  Comparing 'bar-gmp.Rout' to 'bar-gmp.Rout.save' ... OK
  Running 'bar.R' [1s]
  Comparing 'bar.Rout' to 'bar.Rout.save' ... OK
  Running 'bug.R' [1s]
  Comparing 'bug.Rout' to 'bug.Rout.save' ... OK
  Running 'bug2.R' [0s]
  Comparing 'bug2.Rout' to 'bug2.Rout.save' ... OK
  Running 'chull.R' [1s]
  Comparing 'chull.Rout' to 'chull.Rout.save' ... OK
  Running 'chull2.R' [10s]
  Comparing 'chull2.Rout' to 'chull2.Rout.save' ... OK
  Running 'convert.R' [1s]
  Comparing 'convert.Rout' to 'convert.Rout.save' ... OK
  Running 'fred.R' [1s]
  Comparing 'fred.Rout' to 'fred.Rout.save' ... OK
  Running 'lpcdd.R' [1s]
  Comparing 'lpcdd.Rout' to 'lpcdd.Rout.save' ... OK
  Running 'make.R' [0s]
  Running 'oops.R' [0s]
  Running 'qgram.R' [0s]
  Running 'qmatmult.R' [0s]
  Running 'qux-gmp.R' [0s]
  Running 'qux.R' [0s]
  Running 'redund.R' [0s]
  Running 'sammy.R' [0s]
  Running 'subset.R' [0s]
  Comparing 'subset.Rout' to 'subset.Rout.save' ... OK
  Running 'zero.R' [1s]
  Comparing 'zero.Rout' to 'zero.Rout.save' ... OK
Running the tests in 'tests/make.R' failed.
Complete output:
  
Running the tests in 'tests/sammy.R' failed.
Complete output:
  Fatal error: couldn't allocate node stack
installed size is 24.3Mb
  sub-directories of 1Mb or more:
    cont  24.2Mb
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/tools/libs/x64/tools.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rcdklibs
Loading required package: rJava
[0.015s][warning][gc] Failed to reserve memory for new overflow mark stack with 4096 chunks and size 33554432B.
Error occurred during initialization of VM
Failed to allocate initial concurrent mark overflow mark stack.
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'rcheology-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp8UBpi2\fileae5451e6e46'
Error in eval(quote({ : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
In addition: Warning message:
In eval(quote({ : internal error -4 in R_decompress1
Execution halted
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate memory for pointer stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running massageExamples to create 'rciplot-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Error: package or namespace load failed for 'rcmdcheck' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/processx/libs/x64/processx.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", m
Execution halted
Warning in gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/tools/Meta/nsInfo.rds', probable reason 'Not enough space'
Error in gzfile(file, "rb") : cannot open the connection
Calls: loadNamespace -> readRDS -> gzfile
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Depends: includes the non-default packages:
  'biclust', 'fabia', 'iBBiG', 'superbiclust', 'BcDiag', 'BicARE',
  's4vd', 'BiBitR'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
S3 methods shown with full name in documentation object 'editDataset.design':
  'editDataset.design'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
checkRd: (-1) RcmdrPlugin.MA-package.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) RcmdrPlugin.MA-package.Rd:23: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ROpenOffice'
Depends: includes the non-default packages:
  'IQCC', 'qcc', 'qicharts2', 'randtests', 'rmarkdown',
  'TeachingDemos', 'tseries'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    R     1.2Mb
    doc   3.2Mb
    po    2.4Mb
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
During startup - Warning message:
package 'utils' in options("defaultPackages") was not found 
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpiC4Bjy\filed82838d021dd'
Error in readRDS(mapfile) : error reading from connection
Execution halted
Warning in fun(libname, pkgname) : internal error -4 in R_decompress1
Error: .onLoad failed in loadNamespace() for 'tools', details:
  call: fun(libname, pkgname)
  error: lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Execution halted
See sections 'The INDEX file' and 'Package subdirectories' in the
'Writing R Extensions' manual.
Error in force(.handleSimpleError) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
In addition: Warning message:
In force(.handleSimpleError) : internal error -4 in R_decompress1
Execution halted
prepare_Rd: PCRE error
	'no more memory'
	for element 1
Fatal error: couldn't allocate node stack
Error in doWithOneRestart(return(expr), restart) : 
  promise already under evaluation: recursive default argument reference or earlier problems?
Calls: .OptRequireMethods
Execution halted
Error(s) in re-building vignettes:
--- re-building 'contributing-an-optimizer.Rmd' using rmarkdown
--- finished re-building 'contributing-an-optimizer.Rmd'

--- re-building 'docker-readme.Rmd' using rmarkdown
--- finished re-building 'docker-readme.Rmd'

--- re-building 'opt-common-subexpr.Rmd' using rmarkdown
--- finished re-building 'opt-common-subexpr.Rmd'

--- re-building 'opt-constant-folding.Rmd' using rmarkdown
--- finished re-building 'opt-constant-folding.Rmd'

--- re-building 'opt-constant-propagation.Rmd' using rmarkdown
--- finished re-building 'opt-constant-propagation.Rmd'

--- re-building 'opt-dead-code.Rmd' using rmarkdown
--- finished re-building 'opt-dead-code.Rmd'

--- re-building 'opt-dead-expr.Rmd' using rmarkdown


SUMMARY: processing the following files failed:
  'opt-dead-expr.Rmd' 'opt-dead-store.Rmd' 'opt-loop-invariant.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    corpora   7.4Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/Rcplex.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    include   6.5Mb
    libs      1.2Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
installed size is 45.6Mb
  sub-directories of 1Mb or more:
    include  45.3Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   3.8Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    include   7.7Mb
    libs      1.2Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    include   6.4Mb
    libs      1.1Mb
GNU make is a SystemRequirements.
Specified C++14: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/Rcpp.Rcheck/00install.out' for details.
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    include        2.0Mb
    jsonexamples   3.8Mb
    libs           2.0Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
During startup - Warning messages:
1: In registerS3methods(nsInfo$S3methods, package, env) :
  internal error -4 in R_decompress1
2: package 'utils' in options("defaultPackages") was not found 
3: In registerS3methods(nsInfo$S3methods, package, env) :
  restarting interrupted promise evaluation
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
9: inDL(x, as.logical(local), as.logical(now), ...)
8: dyn.load(file, DLLpath = DLLpath, ...)
7: library.dynam(lib, package, package.lib)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: namespaceImport(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), 
       versionCheck = vI[[j]]), from = package, except = i$except)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Error: package or namespace load failed for 'rcrossref' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), d
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpuwspTQ\file27208241579fe'
Error: package or namespace load failed for 'rcrypt':
 .onLoad failed in loadNamespace() for 'rcrypt', details:
  call: fun(libname, pkgname)
  error: Please install GPG first or check if GPG can be run from the command line.
      The rcrypt package is just an interface to GPG. See https://gnupg.org/ for
      installation guidelines.
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quie
Execution halted
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'rcrypt-Ex.R' failed

 NONE
as.simple_triplet_sym_matrix:
  function(x, ...)
as.simple_triplet_sym_matrix.dsTMatrix:
  function(x)

as.simple_triplet_sym_matrix:
  function(x, ...)
as.simple_triplet_sym_matrix.dgeMatrix:
  function(x)

as.simple_triplet_sym_matrix:
  function(x, ...)
as.simple_triplet_sym_matrix.matrix:
  function(x, check.sym)

as.simple_triplet_sym_matrix:
  function(x, ...)
as.simple_triplet_sym_matrix.dsCMatrix:
  function(x)

as.simple_triplet_sym_matrix:
  function(x, ...)
as.simple_triplet_sym_matrix.ddiMatrix:
  function(x)

as.simple_triplet_sym_matrix:
  function(x, ...)
as.simple_triplet_sym_matrix.dsyMatrix:
  function(x)

as.simple_triplet_sym_matrix:
  function(x, ...)
as.simple_triplet_sym_matrix.dpoMatrix:
  function(x)

as.simple_triplet_sym_matrix:
  function(x, ...)
as.simple_triplet_sym_matrix.dgTMatrix:
  function(x)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack


During startup - Warning messages:
1: package "methods" in options("defaultPackages") was not found 
2: In doTryCatch(return(expr), name, parentenv, handler) :
  restarting interrupted promise evaluation
During startup - Warning message:
package 'utils' in options("defaultPackages") was not found 
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problems found in 'rcs_cox.ushap.Rd', 'rcs_linear.nshap.Rd'
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/tools/libs/x64/tools.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
'LazyData' is specified without a 'data' directory
During startup - Warning messages:
  1: In importIntoEnv(env, exports, ns, exports) :
    internal error -4 in R_decompress1
  2: package "methods" in options("defaultPackages") was not found 
  3: In importIntoEnv(env, exports, ns, exports) :
    restarting interrupted promise evaluation
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp6n8eVE\file2c6206fd41aa5'
installed size is  9.6Mb
  sub-directories of 1Mb or more:
    libs   7.6Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack
Error: package 'vegan' could not be loaded
Call sequence:
3: stop(gettextf("package %s could not be loaded", sQuote(pkg)), 
       call. = FALSE, domain = NA)
2: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate memory for pointer stack
During startup - Warning message:
package 'utils' in options("defaultPackages") was not found 
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate memory for pointer stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate memory for pointer stack
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/rDataPipeline.Rcheck/00install.out' for details.
Loading this package had a fatal error status code 301
Fatal error: couldn't allocate memory for pointer stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
During startup - Warning messages:
1: In tryCatch(fun(libname, pkgname), error = identity) :
  internal error -4 in R_decompress1
2: package 'utils' in options("defaultPackages") was not found 
3: In tryCatch(fun(libname, pkgname), error = identity) :
  restarting interrupted promise evaluation
Error: package or namespace load failed for 'rdbnomics':
 cannot allocate vector of size 1.9 Mb
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain = NA)
       else stop(msg, call. = FALSE, domain = NA)
   })
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Error: package or namespace load failed for 'rddi':
 .onLoad failed in loadNamespace() for 'methods', details:
  call: (function (n) 
  error: lazy-load database 'D:/RCompile/recent/R/library/methods/R/methods.rdb' is corrupt
In addition: Warning message:
In (function (n)  : internal error -4 in R_decompress1
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  
  R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
  Copyright (C) 2023 The R Foundation for Statistical Computing
  Platform: x86_64-w64-mingw32/x64 (64-bit)
  
  R is free software and comes with ABSOLUTELY NO WARRANTY.
  You are welcome to redistribute it under certain conditions.
  Type 'license()' or 'licence()' for distribution details.
  
  R is a collaborative project with many contributors.
  Type 'contributors()' for more information and
  'citation()' on how to cite R or R packages in publications.
  
  Type 'demo()' for some demos, 'help()' for on-line help, or
  'help.start()' for an HTML browser interface to help.
  Type 'q()' to quit R.
  
  Mingw-w64 runtime failure:
    VirtualProtect failed with code 0x5af
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error in gsub("([\\])", "\\\\\\1", expansion) : 
  invalid regular expression '([\])', reason 'Out of memory'
Calls: Sys.setenv ... .expand_R_libs_env_var -> expand -> sprintf -> gsub
In addition: Warning message:
In gsub("([\\])", "\\\\\\1", expansion) :
  TRE pattern compilation error 'Out of memory'
Execution halted
Error in readRDS(mapfile) : error reading from connection
Execution halted
Error in eval(quote({ : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: local -> eval.parent -> eval -> eval -> eval -> eval
In addition: Warning message:
In eval(quote({ : internal error -4 in R_decompress1
Execution halted
Fatal error: couldn't allocate node stack
Error(s) in re-building vignettes:
--- re-building 'DT00-DecisionTreeTutorial.Rmd' using rmarkdown
--- finished re-building 'DT00-DecisionTreeTutorial.Rmd'

--- re-building 'DT01-Sumatriptan.Rmd' using rmarkdown
--- finished re-building 'DT01-Sumatriptan.Rmd'

--- re-building 'DT02-Tegaderm.Rmd' using rmarkdown
--- finished re-building 'DT02-Tegaderm.Rmd'

--- re-building 'DT03-ShaleGas.Rmd' using rmarkdown
--- finished re-building 'DT03-ShaleGas.Rmd'

--- re-building 'GT01-NewScientistPuzzle.Rmd' using rmarkdown
--- finished re-building 'GT01-NewScientistPuzzle.Rmd'

--- re-building 'SM01-HIV.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'SM01-HIV.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'SM01-HIV.Rmd'

SUMMARY: processing the following file failed:
  'SM01-HIV.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
'LazyData' is specified without a 'data' directory
Running 'spelling.R' [1s]
  Running 'testthat.R' [0s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'devAll'
Error in (function (n)  : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: local ... eval.parent -> eval -> eval -> eval -> eval -> <Anonymous>
In addition: Warning message:
In (function (n)  : internal error -4 in R_decompress1
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Error: .onLoad failed in loadNamespace() for 'rlang', details:
  call: gzfile(file, "rb")
  error: cannot open the connection
Call sequence:
8: stop(gettextf("%s failed in %s() for '%s', details:\n  call: %s\n  error: %s", 
       hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], 
       conditionMessage(res)), call. = FALSE, domain = NA)
7: runHook(".onLoad", env, package.lib, package)
6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
as.integer64:
  function(x, ...)
as.integer64.SNOMEDconcept:
  function(x)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   1.8Mb
    libs   2.2Mb
During startup - Warning messages:
1: In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/grDevices/Meta/package.rds', probable reason 'Not enough space'
2: package 'grDevices' in options("defaultPackages") was not found 
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Error in readRDS(nsInfoFilePath) : error reading from connection
Calls: <Anonymous> ... .Rd_get_offending_autogenerated_content -> config_val_to_logical -> loadNamespace -> readRDS
Execution halted
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'rdi-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpSA8FUM\file27cd0204c1212'
'LazyData' is specified without a 'data' directory
Error: .onLoad failed in loadNamespace() for 'methods', details:
  call: (function (n) 
  error: lazy-load database 'D:/RCompile/recent/R/library/methods/R/methods.rdb' is corrupt
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/stringdist/libs/x64/stringdist.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: suppressMessages ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Found the following possibly unsafe calls:
Error in (function (n)  : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
In addition: Warning message:
In (function (n)  : internal error -4 in R_decompress1
Execution halted
'LazyData' is specified without a 'data' directory
Error: package or namespace load failed for 'rdmulti' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'R6'
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain = NA)
       else stop(msg, call. = FALSE, domain = NA)
   })
1: library(package, lib.loc = lib.loc, character.only 
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Error in find.package(package, lib.loc) : 
  there is no package called 'rdnb'
Calls: <Anonymous> -> find.package
Execution halted
Warning in (function (n)  : internal error -4 in R_decompress1
Error in (function (n)  : 
  lazy-load database 'D:/RCompile/recent/R/library/utils/R/utils.rdb' is corrupt
Calls: <Anonymous> ... config_val_to_logical -> loadNamespace -> registerS3methods -> <Anonymous>
Execution halted
Error in doWithOneRestart(return(expr), restart) : 
  promise already under evaluation: recursive default argument reference or earlier problems?
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/processx/libs/x64/processx.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Running examples in 'rdpower-Ex.R' failed
The error most likely occurred in:

> ### Name: rdmde
> ### Title: MDE Calculations for RD Designs
> ### Aliases: rdmde
> 
> ### ** Examples
> 
> # Toy dataset
> X <- array(rnorm(2000),dim=c(1000,2))
> R <- X[,1] + X[,2] + rnorm(1000)
> Y <- 1 + R -.5*R^2 + .3*R^3 + (R>=0) + rnorm(1000)
> # MDE calculation
> tmp <- rdmde(data=cbind(Y,R),init.cond=0.5)
Error in get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable) : 
  object '#HAS_DUPLICATE_CLASS_NAMES' not found
Calls: rdmde ... .newOrMultipleMethod -> .duplicateClassesExist -> get
Execution halted
Found the following significant warnings:
  d:\rtools43\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\12.2.0\include\c++\bits\shared_ptr_base.h:921:15: warning: 'static void Eigen::PlainObjectBase<Derived>::operator delete(void*) [with Derived = Eigen::Matrix<float, -1, -1, 1>]' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
See 'd:/Rcompile/CRANpkg/local/4.3/rDppDiversity.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
Error: lazy-load database 'D:/RCompile/recent/R/library/methods/R/methods.rdb' is corrupt
Call sequence:
14: get0(name, envir = where, mode = "function", inherits = FALSE)
13: methods::getFunction(pmi, FALSE, FALSE, ns)
12: FUN(X[[i]], ...)
11: vapply(pm, function(pmi) {
        f <- methods::getFunction(pmi, FALSE, FALSE, ns)
        is.primitive(f)
    }, logical(1L))
10: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
9: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
8: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
7: asNamespace(ns)
6: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
3: loadNamespace(i, c(l
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Fatal error: couldn't allocate node stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Found the following possibly unsafe calls:
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
installed size is 10.1Mb
  sub-directories of 1Mb or more:
    java  10.1Mb
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/grid/libs/x64/grid.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous>
Execution halted
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    R      3.5Mb
    data   1.4Mb
Output for data("metaIndex", package = "rdwd"):
  Error in load(zfile, envir = tmp_env) : empty (zero-byte) input file
  Calls: <Anonymous> ... suppressMessages -> withCallingHandlers -> <Anonymous> -> load
  In addition: Warning message:
  In readChar(con, 5L, useBytes = TRUE) : lzma decoder needed more memory
  Execution halted
Running examples in 'rdwd-Ex.R' failed
The error most likely occurred in:

> ### Name: index
> ### Title: Indexes of files and metadata on the DWD CDC FTP server
> ### Aliases: index fileIndex metaIndex geoIndex gridIndex formatIndex
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(fileIndex)
> data(metaIndex)
Warning in readChar(con, 5L, useBytes = TRUE) :
  lzma decoder needed more memory
Error in load(zfile, envir = tmp_env) : empty (zero-byte) input file
Calls: data -> load
Execution halted
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/rdwplus.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'dataui'
Fatal error: couldn't allocate node stack

Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
During startup - Warning message:
package "methods" in options("defaultPackages") was not found 

Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/stats/libs/x64/stats.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Running examples in 'reactablefmtr-Ex.R' failed
The error most likely occurred in:

> ### Name: add_legend
> ### Title: Add a legend to a reactable table
> ### Aliases: add_legend
> 
> ### ** Examples
> 
> library(magrittr)
> ## Create the reactable table and then pipe in the legend
> data <- iris[10:29, ]
> table <- reactable(data,
+ columns = list(Sepal.Length = colDef(
+ cell = color_tiles(data))))
> 
> table %>%
+   add_legend(data = data,
+              col_name = "Sepal.Length")
Error in file.append(to[okay], from[okay]) : 
  could not allocate copy buffer
Calls: <Anonymous> ... copyDependencyToDir -> mapply -> <Anonymous> -> file.copy -> file.append
Execution halted
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
'LazyData' is specified without a 'data' directory
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [5s] NOTE
Fatal error: couldn't allocate node stack
Warning in gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/base/Meta/Rd.rds', probable reason 'Not enough space'
Error in gzfile(file, "rb") : cannot open the connection
Calls: <Anonymous> -> lapply -> FUN -> readRDS -> gzfile
Execution halted
Fatal error: couldn't allocate node stack

Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpuCVmKW\file2a5f8754c23a7'
Fatal error: couldn't allocate node stack

The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation

Fatal error: couldn't allocate node stack


Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/methods/libs/x64/methods.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... withCallingHandlers -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Running massageExamples to create 'readmet-Ex.R' failed
Fatal error: couldn't allocate node stack

 NONE
Warning in registerS3methods(nsInfo$S3methods, package, env) :
  internal error -4 in R_decompress1
Error in registerS3methods(nsInfo$S3methods, package, env) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Loading this package had a fatal error status code 1033
Loading log:
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
'LazyData' is specified without a 'data' directory
Running 'first_edition.R' [28s]
  Running 'second_edition.R' [33s]
  Running 'spelling.R' [1s]
Running the tests in 'tests/second_edition.R' failed.
Complete output:
  > library(testthat)
  > library(readr)
  
  Attaching package: 'readr'
  
  The following objects are masked from 'package:testthat':
  
      edition_get, local_edition
  
  > 
  > test_check("readr")
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/tools/libs/x64/tools.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Loading this package had a fatal error status code 301
Specified C++11: please drop specification unless essential
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/stats/libs/x64/stats.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpsbW43E\filea2802c655f7c'
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/readwritesqlite.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Specified C++11: please drop specification unless essential
Running massageExamples to create 'rearrr-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpoNt545\file32be470346e2c'
'LazyData' is specified without a 'data' directory
Error: there is no package called 'rebird'
Call sequence:
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
Error: .onLoad failed in loadNamespace() for 'rlang', details:
  call: inDL(x, as.logical(local), as.logical(now), ...)
  error: unable to load shared object 'D:/RCompile/recent/R/library/methods/libs/x64/methods.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
8: stop(gettextf("%s failed in %s() for '%s', details:\n  call: %s\n  error: %s", 
       hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], 
       conditionMessage(res)), call. = FALSE, domain = NA)
7: runHook(".onLoad", env, package.lib, package)
6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]],
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running massageExamples to create 'rebird-Ex.R' failed

 NONE
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> # Usage
> x <- "1234567890"
> stringi::stri_extract_first_regex(x, one_or_more(DIGIT))
[1] "1234567890"
> stringi::stri_extract_first_regex(x, repeated(DIGIT, lo = 3, hi = 6))
[1] "123456"
> stringi::stri_extract_first_regex(x, lazy(repeated(DIGIT, lo = 3, hi = 6)))
[1] "123"
> 
> col <- c("color", "colour")
> stringi::stri_detect_regex(col, "colo" %R% optional("u") %R% "r")
[1] TRUE TRUE
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  1.15 0.11 1.58 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp6ZuTnj\file2062c46ac62f7'
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp84Wrmd\file26e24128a3452'
Running massageExamples to create 'recexcavAAR-Ex.R' failed

 NONE
'LazyData' is specified without a 'data' directory
Running examples in 'recipes-Ex.R' failed
The error most likely occurred in:

> ### Name: prep
> ### Title: Estimate a preprocessing recipe
> ### Aliases: prep prep.recipe
> 
> ### ** Examples
> 
> ## Don't show: 
> if (rlang::is_installed("modeldata")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ data(ames, package = "modeldata")
+ 
+ library(dplyr)
+ 
+ ames <- mutate(ames, Sale_Price = log10(Sale_Price))
+ 
+ ames_rec <-
+   recipe(
+     Sale_Price ~ Longitude + Latitude + Neighborhood + Year_Built + Central_Air,
+     data = ames
+   ) %>%
+   step_other(Neighborhood, threshold = 0.05) %>%
+   step_dummy(all_nominal()) %>%
+   step_interact(~ starts_with("Central_Air"):Year_Built) %>%
+   step_ns(Longitude, Latitude, deg_free = 5)
+ 
+ prep(ames_rec, verbose = TRUE)
+ 
+ prep(ames_rec, log_changes = TRUE)
+ ## Don't show: 
+ }) # examplesIf
> data(ames, package = "modeldata")
> library(dplyr)
> ames <- mutate(ames, Sale_Price = log10(Sale_Price))
Error: cannot allocate vector of size 993 Kb
Execution halted
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack

All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [1s] OK
Specified C++11: please drop specification unless essential
Running examples in 'recoder-Ex.R' failed
The error most likely occurred in:

> ### Name: recoder
> ### Title: Simple and Handy Recoder
> ### Aliases: recoder
> ### Keywords: recode
> 
> ### ** Examples
> 
> u = rnorm(1000)
> u.2 = recoder(u,'<-2: -2; >2 : 2' ,other = 0)
> plot(u,u.2)
> 
> # use a function of 'x' for assigning new values based on old values
> u.3 = recoder(u,'<-2: -2; >2 : 2; >=-2 & <=2 : $^3/4') 
> # NOTE: instructions in recode are executed from left to right
> # So u.3 and u.4 are the same
> u.4 = recoder(u,'<-2: -2; >=-2 : $^3/4;  >2 : 2')
> plot(u, u.3)
> 
> # another example of a piecewise defined function
> x = runif(1000,-1,10)
> y = recoder(x,'>0 & <1: sqrt($); >=1 : 1+log($)' ,other=NA) 
> plot(y~x)
> table(is.na(y))

FALSE  TRUE 
  908    92 
> 
> # we can also create other types of variables
> k = rpois(n = 10000, lambda = 3)
> evodd = recoder(k %% 2, '0: "even"; 1: "odd" ')
Error: cannot allocate vector of size 78 Kb
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
installed size is 10.3Mb
  sub-directories of 1Mb or more:
    htmlwidgets   9.8Mb
'LazyData' is specified without a 'data' directory
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    data   9.0Mb
Output for data("MSWeb", package = "recommenderlab"):
  Error in load(zfile, envir = tmp_env) : empty (zero-byte) input file
  Calls: <Anonymous> ... suppressMessages -> withCallingHandlers -> <Anonymous> -> load
  In addition: Warning message:
  In readChar(con, 5L, useBytes = TRUE) : lzma decoder needed more memory
  Execution halted
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack


It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error: lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/pillar/R/pillar.rdb' is corrupt
Call sequence:
8: get(Info[i, 1], envir = env)
7: registerS3methods(nsInfo$S3methods, package, env)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack

See sections 'The INDEX file' and 'Package subdirectories' in the
'Writing R Extensions' manual.
Found the following files with non-ASCII characters:
  Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  : 
    invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]', reason 'Out of memory'
  Calls: <Anonymous> -> list_files_with_type -> grep
  In addition: Warning message:
  In grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  :
    TRE pattern compilation error 'Out of memory'
  Execution halted
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
Loading this package had a fatal error status code 301
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
regcomp error: 'Out of memory'
problem found in 'Reco.Rd'
Error in gsub(paste0("(^|[^%])(%%)*%", spec), replace, x) : 
  invalid regular expression '(^|[^%])(%%)*%S', reason 'Out of memory'
Calls: Sys.setenv -> .expand_R_libs_env_var -> expand -> gsub
In addition: Warning message:
In gsub(paste0("(^|[^%])(%%)*%", spec), replace, x) :
  TRE pattern compilation error 'Out of memory'
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error: package or namespace load failed for 'recosystem':
 cannot allocate vector of size 1.9 Mb
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain = NA)
       else stop(msg, call. = FALSE, domain = NA)
   })
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
Fatal error: couldn't allocate node stack
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Read 10 items
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'introduction.Rmd'

SUMMARY: processing the following file failed:
  'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'recurrentpseudo.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Warning in system(paste(shQuote(path), "--version"), intern = TRUE) :
  running command '"C:/PROGRA~1/Pandoc/pandoc.exe" --version' had status 251
Error: processing vignette 'recurrentpseudo.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'recurrentpseudo.Rmd'

SUMMARY: processing the following file failed:
  'recurrentpseudo.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpOSCPp7\filebd88353f58b7'
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc    3.3Mb
    libs   1.1Mb
Loading this package had a fatal error status code 5
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fansi/libs/x64/fansi.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpgbJUDZ\file7f908214c98'
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   1.2Mb
    libs   2.0Mb
Loading this package had a fatal error status code 301
Error in runHook(".onLoad", env, package.lib, package) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: getNamespace -> loadNamespace -> runHook
In addition: Warning message:
In runHook(".onLoad", env, package.lib, package) :
  internal error -4 in R_decompress1
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'iteration-vignette.Rmd' using rmarkdown
--- finished re-building 'iteration-vignette.Rmd'

--- re-building 'redlistr-vignette.Rmd' using rmarkdown
Quitting from lines 289-296 (redlistr-vignette.Rmd) 
Error: processing vignette 'redlistr-vignette.Rmd' failed with diagnostics:
cannot allocate vector of size 8.2 Mb
--- failed re-building 'redlistr-vignette.Rmd'

SUMMARY: processing the following file failed:
  'redlistr-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack


It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
During startup - Warning messages:
1: In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/stats/Meta/nsInfo.rds', probable reason 'Not enough space'
2: package 'stats' in options("defaultPackages") was not found
'LazyData' is specified without a 'data' directory
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [2s] NOTE
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found
Error: cannot allocate vector of size 3 Kb
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'intro_refdb.Rmd' using rmarkdown
Quitting from lines 66-72 (intro_refdb.Rmd) 
Warning in dev.off(dv) : processing of the plot ran out of memory
Error: processing vignette 'intro_refdb.Rmd' failed with diagnostics:
unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/stringi/libs/x64/stringi.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

--- failed re-building 'intro_refdb.Rmd'


SUMMARY: processing the following files failed:
  'intro_refdb.Rmd' 'ncbi_bold.Rmd'

Error: Vignette re-building failed.
Execution halted
Error in grepl(.valid_maintainer_field_regexp, val) : 
  invalid regular expression '^[[:space:]]*(.*<(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+>|ORPHANED)[[:space:]]*$', reason 'Out of memory'
Calls: <Anonymous> -> grepl
In addition: Warning message:
In grepl(.valid_maintainer_field_regexp, val) :
  TRE pattern compilation error 'Out of memory'
Execution halted
Error: there is no package called 'wk'
Call sequence:
12: find.package(package, lib.loc, verbose = verbose)
11: library.dynam(lib, package, package.lib)
10: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
9: asNamespace(ns)
8: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
6: asNamespace(ns)
5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
During startup - Warning messages:
1: In (function (n)  : internal error -4 in R_decompress1
2: package "methods" in options("defaultPackages") was not found 

Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/stats/libs/x64/stats.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Error: package or namespace load failed for 'refitME' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/mvtnorm/libs/x64/mvtnorm.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Running examples in 'refitME-Ex.R' failed
The error most likely occurred in:

> ### Name: MCEMfit_gam
> ### Title: Function for wrapping the MCEM algorithm on 'gam' objects
> ### Aliases: MCEMfit_gam
> 
> ### ** Examples
> 
> # A GAM example using the air pollution data set from the SemiPar package.
> 
> library(refitME)
> library(SemiPar)
> library(mgcv)
Loading required package: nlme
This is mgcv 1.8-42. For overview type 'help("mgcv-package")'.
> library(dplyr)

Attaching package: 'dplyr'

The following object is masked from 'package:nlme':

    collapse

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

> 
> data(milan.mort)
> 
> dat.air <- sample_n(milan.mort, 100) # Takes a random sample of size 100.
> 
> Y <- dat.air[, 6]  # Mortality counts.
> 
> n <- length(Y)
> 
> z1 <- (dat.air[, 1])
> z2 <- (dat.air[, 4])
> z3 <- (dat.air[, 5])
> w1 <- log(dat.air[, 9])  # The error-contaminated predictor (total suspended particles).
> 
> dat <- data.frame(cbind(Y, w1, z1, z2, z3))
> 
> gam_naiv <- gam(Y ~ s(w1), family = "poisson", data = dat)
> 
> sigma.sq.u <- 0.0915 # Measurement error variance.
> 
> B <- 10  # Consider increasing this if you want a more accurate answer.
> 
> gam_MCEM <- refitME(gam_naiv, sigma.sq.u, B)
One specified error-contaminated predictor/covariate.
Error in smooth.construct.tp.smooth.spec(object, dk$data, dk$knots) : 
  'R_Calloc' could not allocate memory (1000000 of 8 bytes)
Calls: refitME -> MCEMfit_gam
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Fatal error: couldn't allocate memory for pointer stack
Fatal error: couldn't allocate node stack

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running massageExamples to create 'refnr-Ex.R' failed

 NONE
Error: cannot allocate vector of size 307 Kb
Call sequence:
9: get(classMetaName(cl), where)
8: methods::cacheMetaData(ns, TRUE, ns)
7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
6: asNamespace(ns)
5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 

Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate memory for pointer stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'refuge-Ex.R' failed

 NONE
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/mvtnorm/libs/x64/mvtnorm.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
16: inDL(x, as.logical(local), as.logical(now), ...)
15: dyn.load(file, DLLpath = DLLpath, ...)
14: library.dynam(lib, package, package.lib)
13: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
12: asNamespace(ns)
11: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
        .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
10: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
9: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
8: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
6: loadNamespace(i, c(lib.loc, .libPaths()), 
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/magrittr/libs/x64/magrittr.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: suppressMessages ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate memory for pointer stack

The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Error: .onLoad failed in loadNamespace() for 'methods', details:
  call: NULL
  error: cannot allocate vector of size 88 Kb
Call sequence:
6: stop(gettextf("%s failed in %s() for '%s', details:\n  call: %s\n  error: %s", 
       hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], 
       conditionMessage(res)), call. = FALSE, domain = NA)
5: runHook(".onLoad", env, package.lib, package)
4: loadNamespace("methods")
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack
Error: cannot allocate vector of size 202 Kb
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Running massageExamples to create 'reghelper-Ex.R' failed
Fatal error: couldn't allocate node stack

 NONE
Running massageExamples to create 'regional-Ex.R' failed

 NONE
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Specified C++11: please drop specification unless essential
Warning in exists(name, inlineHandlers, inherits = FALSE) :
  restarting interrupted promise evaluation
checkRd: (-1) pima.Rd:24: Escaped LaTeX specials: \^
checkRd: (-1) reglogit.Rd:120: Escaped LaTeX specials: \&
checkRd: (-1) reglogit.Rd:124: Escaped LaTeX specials: \&
checkRd: (-1) reglogit.Rd:136: Escaped LaTeX specials: \&
Fatal error: couldn't allocate memory for symbol table
Running massageExamples to create 'reglogit-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Error in lazyLoad(dbbase, ns, filter = function(n) n != ".__NAMESPACE__.") : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
In addition: Warning message:
In lazyLoad(dbbase, ns, filter = function(n) n != ".__NAMESPACE__.") :
  internal error -4 in R_decompress1
Error: unable to load R code in package 'compiler'
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running 'testthat.R' [41s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(regmedint)
  > 
  > test_check("regmedint")
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 3874 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-04_fit_yreg_survAFT_exp.R:17:1'): (code run outside of `test_that()`) ──
  Error in `mutate(., male = if_else(sex == "m", 1L, 0L), status = if_else(status == 
      0, 0L, 1L))`: lazy-load database 'D:\RCompile\CRANpkg\lib\4.3\survival/data/Rdata.rdb' is corrupt
  Backtrace:
      ▆
   1. ├─testthat::describe(...) at test-04_fit_yreg_survAFT_exp.R:17:0
   2. │ └─base::eval(substitute(code), describe_environment)
   3. │   └─base::eval(substitute(code), describe_environment)
   4. │     └─pbc[complete.cases(pbc), ] %>% ... at test-04_fit_yreg_survAFT_exp.R:22:4
   5. └─dplyr::mutate(...)
  ── Error ('test-08_regmedint_class_user_methods.R:12:1'): (code run outside of `test_that()`) ──
  Error in `mutate(., male = if_else(sex == "m", 1L, 0L), status = if_else(status == 
      0, 0L, 1L), bili_bin = if_else(bili > median(bili), 1L, 0L), 
      alk_phos = alk.phos)`: lazy-load database 'D:\RCompile\CRANpkg\lib\4.3\survival/data/Rdata.rdb' is corrupt
  Backtrace:
      ▆
   1. ├─testthat::describe(...) at test-08_regmedint_class_user_methods.R:12:0
   2. │ └─base::eval(substitute(code), describe_environment)
   3. │   └─base::eval(substitute(code), describe_environment)
   4. │     └─pbc[complete.cases(pbc), ] %>% ... at test-08_regmedint_class_user_methods.R:16:4
   5. └─dplyr::mutate(...)
  
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 3874 ]
  Error: Test failures
  Execution halted
Specified C++11: please drop specification unless essential
Output for data("medsim", package = "regmed"):
  Error in find.package(package, lib.loc, verbose = verbose) : 
    there is no package called 'regmed'
  Calls: <Anonymous> ... suppressMessages -> withCallingHandlers -> <Anonymous> -> find.package
  Execution halted
Error in xzfile(file, "wb", compression = 9) : cannot open the connection
  Calls: <Anonymous> -> resaveRdaFiles -> save -> xzfile
  In addition: Warning message:
  In xzfile(file, "wb", compression = 9) :
    cannot initialize lzma encoder, error 5
  Execution halted
Specified C++11: please drop specification unless essential
During startup - Warning message:
package 'grDevices' in options("defaultPackages") was not found 
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Error in xzfile(file, "wb", compression = 9) : cannot open the connection
  Calls: <Anonymous> -> resaveRdaFiles -> save -> xzfile
  In addition: Warning message:
  In xzfile(file, "wb", compression = 9) :
    cannot initialize lzma encoder, error 5
  Execution halted
Specified C++11: please drop specification unless essential
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    include   6.5Mb
    libs      1.3Mb
Loading this package had a fatal error status code 301
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack


A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error in readRDS(mapfile) : error reading from connection
Error: unable to load R code in package 'compiler'
Execution halted
Error in invokeRestart("grmbl", e, sys.calls()) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Execution halted
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate memory for pointer stack
During startup - Warning message:
package 'graphics' in options("defaultPackages") was not found 
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack


A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error in readRDS(mapfile) : error reading from connection
Error: package or namespace load failed for 'regsubseq':
 unable to load R code in package 'regsubseq'
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error: .onLoad failed in loadNamespace() for 'rlang', details:
  call: inDL(x, as.logical(local), as.logical(now), ...)
  error: unable to load shared object 'D:/RCompile/recent/R/library/methods/libs/x64/methods.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
10: stop(gettextf("%s failed in %s() for '%s', details:\n  call: %s\n  error: %s", 
        hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], 
        conditionMessage(res)), call. = FALSE, domain = NA)
9: runHook(".onLoad", env, package.lib, package)
8: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L
Execution halted
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
10: inDL(x, as.logical(local), as.logical(now), ...)
9: dyn.load(file, DLLpath = DLLpath, ...)
8: library.dynam(lib, package, package.lib)
7: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/mvtnorm/libs/x64/mvtnorm.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
14: inDL(x, as.logical(local), as.logical(now), ...)
13: dyn.load(file, DLLpath = DLLpath, ...)
12: library.dynam(lib, package, package.lib)
11: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
10: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
        versionCheck = vI[[i]]), from = package)
9: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
8: asNamespace(ns)
7: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = pa
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found
During startup - Warning message:
  package 'stats' in options("defaultPackages") was not found
Running massageExamples to create 'regtomean-Ex.R' failed

 NONE
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error loading dataset 'quizzes': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
  
  Error loading dataset 'weatherTS': empty (zero-byte) input file
  Call sequence:
  3: stop("empty (zero-byte) input file")
  2: load(zfile, envir = tmp_env)
  1: utils::data(list = f, package = character(), envir = dataEnv)
    ...
Running massageExamples to create 'regtools-Ex.R' failed

 NONE
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate node stack
Warning message:
In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/stats/Meta/nsInfo.rds', probable reason 'Not enough space'
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Error: lazy-load database 'D:/RCompile/recent/R/library/compiler/R/compiler.rdb' is corrupt
In addition: Warning message:
internal error -4 in R_decompress1 
Execution halted
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Error: cannot allocate vector of size 202 Kb
Execution halted
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Incorrect (un)loading of package shared object.
Error in namespaceIsSealed(ns) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: getNamespace ... loadNamespace -> namespaceExport -> namespaceIsSealed
In addition: Warning message:
In namespaceIsSealed(ns) : internal error -4 in R_decompress1
Execution halted
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [4s] OK
Fatal error: couldn't allocate node stack

All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error: there is no package called 'rehydratoR'
Call sequence:
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
Error: package or namespace load failed for 'rehydratoR':
 .onLoad failed in loadNamespace() for 'rlang', details:
  call: fun(libname, pkgname)
  error: lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/rlang/R/rlang.rdb' is corrupt
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain = NA)
       else stop(msg, call. = FALSE, domain = 
Execution halted
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'Rcplex'
Fatal error: couldn't allocate memory for pointer stack


It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/stats/libs/x64/stats.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for 'reldist' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
'LazyData' is specified without a 'data' directory
Loading this package had a fatal error status code 301
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Error: there is no package called 'fansi'
Call sequence:
17: doWithOneRestart(return(expr), restart)
16: withOneRestart(expr, restarts[[1L]])
15: withRestarts(stop(cond), retry_loadNamespace = function() NULL)
14: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13: asNamespace(ns)
12: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
        .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
11: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
10: asNamespace(ns)
9: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
8: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
7: asNamespace(ns)
6: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: n
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [6s] OK
Found the following files with non-ASCII characters:
  Fatal error: couldn't allocate node stack
  
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
Error in match.fun(FUN) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Fatal error: couldn't allocate node stack
Error in readRDS(nsInfoFilePath) : error reading from connection
Calls: getNamespace -> loadNamespace -> readRDS
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Loading this package had a fatal error status code 301
Found the following files with non-ASCII characters:
  Fatal error: couldn't allocate node stack
  
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
Incorrect (un)loading of package shared object.
Warning in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  :
  TRE pattern compilation error 'Out of memory'
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]', reason 'Out of memory'
Calls: <Anonymous> ... .find_calls_in_package_code -> list_files_with_type -> grep
Execution halted
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [3s] NOTE
Fatal error: couldn't allocate node stack


Found the following possibly unsafe calls:
Fatal error: couldn't allocate node stack
Running massageExamples to create 'remap-Ex.R' failed

 NONE
Loading this package had a fatal error status code 301
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found
Fatal error: couldn't allocate node stack

The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Loading this package had a fatal error status code 301
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 5
Loading this package had a fatal error status code 301
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error(s) in re-building vignettes:
--- re-building 'remss.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'remss.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'remss.Rmd'

SUMMARY: processing the following file failed:
  'remss.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Specified C++11: please drop specification unless essential
checkRd: (-1) ena.plot.group.Rd:44: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.group.Rd:46: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.group.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.trajectory.Rd:38: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.trajectory.Rd:40: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.trajectory.Rd:42: Escaped LaTeX specials: \$
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$', reason 'Out of memory'
Calls: <Anonymous> -> grep
In addition: Warning message:
In grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  :
  TRE pattern compilation error 'Out of memory'
Execution halted
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Running examples in 'renv-Ex.R' failed
The error occurred in:

Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate memory for pointer stack


It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Problems with news in 'NEWS.md':
No news entries found.
Warning in gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/tools/R/tools.rdx', probable reason 'Not enough space'
Error in gzfile(file, "rb") : cannot open the connection
Error: unable to load R code in package 'tools'
Execution halted
'LazyData' is specified without a 'data' directory
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Error: package or namespace load failed for 'repfdr' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/recent/R/library/stats/libs/x64/stats.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error in readRDS(mapfile) : error reading from connection
Error: package or namespace load failed for 'repfdr':
 unable to load R code in package 'repfdr'
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  could not allocate memory (0 Mb) in C function 'R_AllocStringBuffer'
Error: package or namespace load failed for 'replicationInterval' in get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable):
 object '#HAS_DUPLICATE_CLASS_NAMES' not found
In addition: Warning message:
In .getClassesFromCache(Class) : restarting interrupted promise evaluation
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpU5EsEL\file8e449ffd4b'
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Problems with news in 'NEWS.md':
No news entries found.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/tools/libs/x64/tools.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpEhzkfl\file751448ae34c4'
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > if (require(testthat)) {
  +   library(reportfactory)
  +   test_check("reportfactory")
  + } else {
  +   warning("'reportfactory' requires 'testthat' for tests")
  + }
  Loading required package: testthat
  >>> Compiling report: nested/parameterised
  >>> Compiling report: nested/parameterised
  All done!
  
  [ FAIL 1 | WARN 0 | SKIP 13 | PASS 24 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On Windows (13)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-list_outputs.R:76:3'): list_output works, one file compiled ────
  <callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
  Error in `"get_result(output = out, options)"`: ! callr subprocess failed: could not start R, exited with non-zero status, has crashed or was killed
  Backtrace:
      ▆
   1. └─reportfactory::compile_reports(...) at test-list_outputs.R:76:2
   2.   └─callr::r(...)
   3.     └─callr:::get_result(output = out, options)
   4.       └─throw(new_callr_crash_error(output, killmsg))
  
  [ FAIL 1 | WARN 0 | SKIP 13 | PASS 24 ]
  Deleting unused snapshots:
  • compile_reports/missing_param_but_envir.md
  • compile_reports/missing_param_report_check.md
  • compile_reports/nonparameterised_with_params.md
  • compile_reports/outputs_deleted_param_report_check.md
  • compile_reports/param_report_check.md
  Error: Test failures
  Execution halted
Loading this package had a fatal error status code 301
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
'LazyData' is specified without a 'data' directory
Error: package or namespace load failed for 'representr':
 cannot allocate vector of size 1.9 Mb
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack


A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate memory for pointer stack
Fatal error: couldn't allocate node stack

All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'represtools.Rmd' using rmarkdown
Error: processing vignette 'represtools.Rmd' failed with diagnostics:
'CreateProcess' failed to run 'C:\PROGRA~1\Pandoc\pandoc.exe --version'
--- failed re-building 'represtools.Rmd'

SUMMARY: processing the following file failed:
  'represtools.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fs/libs/x64/fs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: inDL(x, as.logical(local), as.logical(now), ...)
5: dyn.load(file, DLLpath = DLLpath, ...)
4: library.dynam(lib, package, package.lib)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Fatal error: couldn't allocate node stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Found the following files with non-ASCII characters:
  Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  : 
    invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]', reason 'Out of memory'
  Calls: <Anonymous> -> list_files_with_type -> grep
  In addition: Warning message:
  In grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  :
    TRE pattern compilation error 'Out of memory'
  Execution halted
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
Error: package or namespace load failed for 'reproducible':
 cannot allocate vector of size 537 Kb
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Running 'test-all.R' [70s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  > library(data.table)
  > origDTthreads <- getDTthreads()
  > setDTthreads(2)
  > # devtools::check(args = c('--as-cran','--run-dontrun','--run-donttest'),
  > #                 env_vars = c("R_REPRODUCIBLE_RUN_ALL_EXAMPLES" = "true"))
  > # opts <- options(reproducible.verbose = -2)
  > # on.exit(options(opts))
  > #  ff <- list()
  > #  runTestsWithTimings("ff", authorizeGoogle = TRUE)
  > #
  > test_check("reproducible")
  Loading required package: reproducible
  [1] "example_Cache.R"              "example_assessDataTypeGDAL.R"
  [3] "example_assessDataType.R"     "example_checkPath.R"         
  [5] "example_postProcess.R"       
    adding: temp/RtmpsXir4A/reproducible/4sZYfp_038/1Gis54o.tif (stored 0%)
    adding: temp/RtmpsXir4A/reproducible/4sZYfp_038/EiHkghZ.grd (stored 0%)
  ERROR: D:\temp\RtmpsXir4A\reproducible\4sZYfp_038\testCache\cache.db
  Cannot open the file as archive
Loading this package had a fatal error status code 301
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate node stack
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: package or namespace load failed for 'rerandPower' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/recent/R/library/methods/libs/x64/methods.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", 
Execution halted
Error: package or namespace load failed for 'rerddap' in gzfile(file, "rb"):
 cannot open the connection
In addition: Warning message:
In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/CRANpkg/lib/4.3/data.table/Meta/features.rds', probable reason 'Not enough space'
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/utils/Meta/nsInfo.rds', probable reason 'Not enough space'
3: package 'grDevices' in options("defaultPackages") was not found 
4: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Fatal error: couldn't allocate node stack

All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Specified C++11: please drop specification unless essential
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate memory for pointer stack
Loading required package: graphics
Loading required package: stats
Error: package or namespace load failed for 'resample':
 cannot allocate vector of size 1.9 Mb
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:
--- re-building 'resemble.Rmd' using rmarkdown
Quitting from lines 731-758 (resemble.Rmd) 
Error: processing vignette 'resemble.Rmd' failed with diagnostics:
task 37 failed - "std::bad_alloc"
--- failed re-building 'resemble.Rmd'

SUMMARY: processing the following file failed:
  'resemble.Rmd'

Error: Vignette re-building failed.
Execution halted
Fatal error: couldn't allocate node stack
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Specified C++11: please drop specification unless essential
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:

======== End of example output (where/before crash/hang up occured ?) ========
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Fatal error: couldn't allocate node stack
checkRd: (-1) cast.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) cast.Rd:46: Escaped LaTeX specials: \_
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
checkRd: (-1) as-data-frame-cast-df-v7.rd:3: Escaped LaTeX specials: \_
checkRd: (-1) as-data-frame-cast-matrix-59.rd:3: Escaped LaTeX specials: \_
checkRd: (-1) as-matrix-cast-df-bu.rd:3: Escaped LaTeX specials: \_
checkRd: (-1) as-matrix-cast-matrix-2y.rd:3: Escaped LaTeX specials: \_
checkRd: (-1) cast-9g.rd:19: Escaped LaTeX specials: \_ \_
checkRd: (-1) cast-9g.rd:41: Escaped LaTeX specials: \_
checkRd: (-1) cast-9g.rd:46: Escaped LaTeX specials: \_ \_
checkRd: (-1) clean-vars-rc.rd:13: Escaped LaTeX specials: \_
checkRd: (-1) expand-kx.rd:15: Escaped LaTeX specials: \_
checkRd: (-1) reshape-4u.rd:17: Escaped LaTeX specials: \_ \_
Fatal error: couldn't allocate node stack
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for 'respR':
 .onLoad failed in loadNamespace() for 'gsw', details:
  call: load(zfile, envir = tmp_env)
  error: empty (zero-byte) input file
In addition: Warning message:
In readChar(con, 5L, useBytes = TRUE) : lzma decoder needed more memory
Execution halted
Fatal error: couldn't allocate node stack
Found the following possibly unsafe calls:
Fatal error: couldn't allocate node stack
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    extdata   1.3Mb
    java      2.9Mb
Loading required package: terra
terra 1.7.18
Loading required package: rJava
Loading required package: methods
Loading required package: units
udunits database from D:/RCompile/CRANpkg/lib/4.3/units/share/udunits/udunits2.xml
Error occurred during initialization of VM
Could not reserve enough space in CodeHeap 'non-nmethods' (2496K)

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Running massageExamples to create 'restorepoint-Ex.R' failed

 NONE
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/pbivnorm/libs/x64/pbivnorm.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
10: inDL(x, as.logical(local), as.logical(now), ...)
9: dyn.load(file, DLLpath = DLLpath, ...)
8: library.dynam(lib, package, package.lib)
7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
6: asNamespace(ns)
5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Running examples in 'rethinker-Ex.R' failed
The error occurred in:

Fatal error: couldn't allocate node stack
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    include   1.9Mb
    libs      1.6Mb
    models    1.6Mb
Loading this package had a fatal error status code 301
Found the following files with non-ASCII characters:
  Fatal error: couldn't allocate node stack
  
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Loading this package had a fatal error status code 301
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc        1.1Mb
    examples   1.9Mb
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack


It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) rec.Rd:23: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpsDvBZH\file1c4e41b7b636c'
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   4.0Mb
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) CardioRiskFactors.Rd:35: Escaped LaTeX specials: \&
Error(s) in re-building vignettes:
--- re-building 'rfm-customer-level-data.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'rfm-customer-level-data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'rfm-customer-level-data.Rmd'

--- re-building 'rfm-transaction-level-data.Rmd' using rmarkdown
--- finished re-building 'rfm-transaction-level-data.Rmd'

SUMMARY: processing the following file failed:
  'rfm-customer-level-data.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
'LazyData' is specified without a 'data' directory
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data      1.9Mb
    doc       1.2Mb
    extdata   1.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/rgdal.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    doc   6.6Mb
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack

The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Incorrect (un)loading of package shared object.
Warning in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  :
  TRE pattern compilation error 'Out of memory'
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]', reason 'Out of memory'
Calls: <Anonymous> ... .find_calls_in_package_code -> list_files_with_type -> grep
Execution halted
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [10s] OK
Running massageExamples to create 'rgho-Ex.R' failed

 NONE
Error: .onLoad failed in loadNamespace() for 'rgl', details:
  call: fun(libname, pkgname)
  error: Loading failed.
Call sequence:
6: stop(gettextf("%s failed in %s() for '%s', details:\n  call: %s\n  error: %s", 
       hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], 
       conditionMessage(res)), call. = FALSE, domain = NA)
5: runHook(".onLoad", env, package.lib, package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Error in loadNamespace(name) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Calls: getNamespace -> loadNamespace
In addition: Warning message:
In loadNamespace(name) : internal error -4 in R_decompress1
Execution halted
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    doc     2.4Mb
    fonts   1.5Mb
    libs    2.6Mb
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fs/libs/x64/fs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) columbus.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) columbus.Rd:25: Escaped LaTeX specials: \_
checkRd: (-1) columbus.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) columbus.Rd:30: Escaped LaTeX specials: \$
Fatal error: couldn't allocate memory for pointer stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate memory for pointer stack
'LazyData' is specified without a 'data' directory
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: .onLoad failed in loadNamespace() for 'methods', details:
  call: (function (n) 
  error: lazy-load database 'D:/RCompile/recent/R/library/methods/R/methods.rdb' is corrupt
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
Loading this package had a fatal error status code 301
installed size is 11.7Mb
  sub-directories of 1Mb or more:
    doc          10.3Mb
    htmlwidgets   1.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'mimic.demo', 'eicu.demo'
Running examples in 'ricu-Ex.R' failed
The error most likely occurred in:

> ### Name: transform_fun
> ### Title: Item callback utilities
> ### Aliases: transform_fun binary_op comp_na set_val apply_map convert_unit
> 
> ### ** Examples
> 
> dat <- ts_tbl(x = rep(1:2, each = 5), y = hours(rep(1:5, 2)), z = 1:10)
> 
> subtract_3 <- transform_fun(binary_op(`-`, 3))
> subtract_3(data.table::copy(dat), val_var = "z")
Error:
! `colonnade()` was deprecated in pillar 1.9.0 and is now defunct.
ℹ Please use `tbl_format_setup()` instead.
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. └─ricu:::print.id_tbl(x)
  3.   ├─ricu:::cat_line(format(x, ..., n = n, width = width))
  4.   │ ├─base::trimws(paste0(...), "right")
  5.   │ │ └─base (local) mysub(paste0(whitespace, "+$"), x)
  6.   │ │   └─base::sub(re, "", x, perl = TRUE)
  7.   │ │     └─base::is.factor(x)
  8.   │ └─base::paste0(...)
  9.   ├─base::format(x, ..., n = n, width = width)
 10.   └─ricu:::format.id_tbl(x, ..., n = n, width = width)
 11.     ├─base::format(prt::trunc_dt(x, n = n, width = width))
 12.     └─prt::trunc_dt(x, n = n, width = width)
 13.       └─prt:::shrink_dt(df, rows)
 14.         └─pillar::colonnade(df, has_row_id = FALSE)
 15.           └─lifecycle::deprecate_stop("1.9.0", "pillar::colonnade()", "pillar::tbl_format_setup()")
 16.             └─lifecycle:::deprecate_stop0(msg)
 17.               └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'jss.Rmd' using rmarkdown
Quitting from lines 452-455 (jss.Rmd) 
Error: processing vignette 'jss.Rmd' failed with diagnostics:
`colonnade()` was deprecated in pillar 1.9.0 and is now defunct.
ℹ Please use `tbl_format_setup()` instead.
--- failed re-building 'jss.Rmd'

--- re-building 'ricu.Rmd' using rmarkdown
--- finished re-building 'ricu.Rmd'

--- re-building 'uom.Rmd' using rmarkdown
--- finished re-building 'uom.Rmd'

SUMMARY: processing the following file failed:
  'jss.Rmd'

Error: Vignette re-building failed.
Execution halted
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) acg.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) gorilla.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) grassmann.utest.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) macg.Rd:71: Escaped LaTeX specials: \&
checkRd: (-1) sphere.utest.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) stiefel.utest.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) wrap.landmark.Rd:41: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    lib    3.3Mb
    libs   4.1Mb
File 'RInside/libs/x64/RInside.dll':
  Found 'srand', possibly from 'srand' (C)
    Object: 'RInside.o'
File 'RInside/libs/x64/libRInside.dll':
  Found 'srand', possibly from 'srand' (C)
    Object: 'RInside.o'
File 'RInside/libs/x64/RInside.dll':
  Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
    'R_ReplDLLinit', 'R_RunExitFinalizers', 'R_SetParams', 'R_TempDir',
    'Rf_endEmbeddedR', 'Rf_initEmbeddedR', 'getRUser', 'get_R_HOME',
    'run_Rmainloop'
File 'RInside/libs/x64/libRInside.dll':
  Found non-API calls to R: 'R_CleanTempDir', 'R_DefParams',
    'R_ReplDLLinit', 'R_RunExitFinalizers', 'R_SetParams', 'R_TempDir',
    'Rf_endEmbeddedR', 'Rf_initEmbeddedR', 'getRUser', 'get_R_HOME',
    'run_Rmainloop'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is 16.2Mb
  sub-directories of 1Mb or more:
    extdata   5.4Mb
    libs     10.6Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    doc    1.5Mb
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Rinit.c:170:24: warning: pointer targets in passing argument 2 of 'Re_ReadConsole' differ in signedness [-Wpointer-sign]
  Rinit.c:251:21: warning: assignment to 'int (*)(const char *, unsigned char *, int,  int)' from incompatible pointer type 'int (*)(const char *, char *, int,  int)' [-Wincompatible-pointer-types]
See 'd:/Rcompile/CRANpkg/local/4.3/rJava.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
Found the following possibly unsafe calls:
File 'rJava/R/import.R':
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File 'rJava/R/jinit.R':
  unlockBinding(x, .env)
  unlockBinding(x, pe)
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  jri/src/Makefile.win
  jri/src/win32/Makefile
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Note: information on .o files for x64 is not available
File 'd:/Rcompile/CRANpkg/lib/4.3/rJava/libs/x64/rJava.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Specified C++11: please drop specification unless essential
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    java   4.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    include   2.9Mb
    libs      2.2Mb
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    java  12.0Mb
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    java  10.8Mb
installed size is 10.3Mb
  sub-directories of 1Mb or more:
    datasets  10.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/RKEELjars.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
installed size is 24.6Mb
  sub-directories of 1Mb or more:
    extdata  23.8Mb
'LazyData' is specified without a 'data' directory
checkRd: (-1) Exponential.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) Gamma.Rd:80: Escaped LaTeX specials: \&
checkRd: (-1) college.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) college.Rd:15: Escaped LaTeX specials: \$
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    lemon   2.9Mb
    libs    2.1Mb
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
installed size is 14.6Mb
  sub-directories of 1Mb or more:
    include   6.5Mb
    lib       2.4Mb
    libs      5.3Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
S3 methods shown with full name in documentation object 'fitted.values.margint':
  'fitted.values.margint'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    rmd   5.7Mb
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    libs   8.6Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/rmcorr.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) cGARCHfilter-class.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) cGARCHfit-class.Rd:59: Escaped LaTeX specials: \&
checkRd: (-1) cGARCHsim-class.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) cGARCHspec-class.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) cgarchsim-methods.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) goGARCHfilter-class.Rd:155: Escaped LaTeX specials: \&
checkRd: (-1) goGARCHfit-class.Rd:166: Escaped LaTeX specials: \&
checkRd: (-1) rmgarch-package.Rd:73: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    libs       1.0Mb
    minizinc   2.3Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   3.5Mb
    doc    2.2Mb
Package suggested but not available for checking: 'rnaturalearthhires'
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    java  12.1Mb
Malformed Title field: should not end in a period.
checkRd: (-1) NlistServersInCategory.Rd:11: Escaped LaTeX specials: \_
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    libs  10.4Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    extdata   2.0Mb
    libs      3.3Mb
'LazyData' is specified without a 'data' directory
autoplot:
  function(object, ...)
autoplot.meteo_coverage:
  function(mateo_coverage, old_style)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    doc    1.7Mb
installed size is 11.3Mb
  sub-directories of 1Mb or more:
    R  11.2Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) addLR.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) addLRinv.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) adtestWrapper.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) arcticLake.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) cenLR.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) cenLRinv.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) expenditures.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) gemas.Rd:68: Escaped LaTeX specials: \&
checkRd: (-1) machineOperators.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) plot.imp.Rd:138: Escaped LaTeX specials: \&
checkRd: (-1) robCompositions-package.Rd:88: Escaped LaTeX specials: \&
checkRd: (-1) skyeLavas.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) variation.Rd:45: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    libs   5.0Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  d:\rtools43\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\12.2.0\include\emmintrin.h:131:24: warning: array subscript '__m128d_u[0]' is partly outside array bounds of 'Eigen::internal::plain_matrix_type<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>, Eigen::Dense>::type [1]' {aka 'Eigen::Matrix<double, 1, 1, 0, 1, 1> [1]'} [-Warray-bounds]
See 'd:/Rcompile/CRANpkg/local/4.3/RobustGaSP.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
'LazyData' is specified without a 'data' directory
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc               1.7Mb
    libs              1.3Mb
    simulationStudy   1.6Mb
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) performance.Rd:35: Escaped LaTeX specials: \#
checkRd: (-1) performance.Rd:36: Escaped LaTeX specials: \# \# \#
checkRd: (-1) performance.Rd:37: Escaped LaTeX specials: \# \#
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package required but not available: 'Rcplex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    R         2.7Mb
    extdata   2.7Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/rolog.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/ROracle.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    data   2.7Mb
    libs   1.5Mb
Running examples in 'routr-Ex.R' failed
The error most likely occurred in:

> ### Name: RouteStack
> ### Title: Combine multiple routes for sequential routing
> ### Aliases: RouteStack
> 
> ### ** Examples
> 
> # Create a new stack
> routes <- RouteStack$new()
> 
> # Populate it wih routes
> first <- Route$new()
> first$add_handler('all', '*', function(request, response, keys, ...) {
+   message('This will always get called first')
+   TRUE
+ })
> second <- Route$new()
> second$add_handler('get', '/demo/', function(request, response, keys, ...) {
+   message('This will get called next if the request asks for /demo/')
+   TRUE
+ })
> routes$add_route(first, 'first')
> routes$add_route(second, 'second')
> 
> # Send a request through
> rook <- fiery::fake_request('http://example.com/demo/', method = 'get')
Error in loadNamespace(x) : there is no package called 'fiery'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R      4.2Mb
    libs   1.5Mb
Package required but not available: 'mvMORPH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data   2.3Mb
    libs   1.3Mb
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'codemetar'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  vendor/boost/intrusive/detail/slist_node.hpp:56:16: warning: pointer used after 'void operator delete(void*, std::size_t)' [-Wuse-after-free]
  vendor/boost/intrusive/detail/hook_traits.hpp:77:10: warning: pointer used after 'void operator delete(void*, std::size_t)' [-Wuse-after-free]
See 'd:/Rcompile/CRANpkg/local/4.3/RPostgres.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    extdata   4.5Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
installed size is 14.5Mb
  sub-directories of 1Mb or more:
    libs  13.9Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'mvMORPH'
Error(s) in re-building vignettes:
--- re-building 'Plotting-tools.Rmd' using rmarkdown_notangle
--- finished re-building 'Plotting-tools.Rmd'

--- re-building 'RRphylo.Rmd' using rmarkdown_notangle
--- finished re-building 'RRphylo.Rmd'

--- re-building 'Tree-Manipulation.Rmd' using rmarkdown_notangle
--- finished re-building 'Tree-Manipulation.Rmd'

--- re-building 'overfitRR.Rmd' using rmarkdown_notangle
--- finished re-building 'overfitRR.Rmd'

--- re-building 'search.conv.Rmd' using rmarkdown_notangle
Quitting from lines 229-306 (search.conv.Rmd) 
Error: processing vignette 'search.conv.Rmd' failed with diagnostics:
could not find function "mvSIM"
--- failed re-building 'search.conv.Rmd'

--- re-building 'search.shift.Rmd' using rmarkdown_notangle
--- finished re-building 'search.shift.Rmd'

--- re-building 'search.trend.Rmd' using rmarkdown_notangle
--- finished re-building 'search.trend.Rmd'

--- re-building 'swapONE.Rmd' using rmarkdown_notangle
--- finished re-building 'swapONE.Rmd'

SUMMARY: processing the following file failed:
  'search.conv.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is 25.4Mb
  sub-directories of 1Mb or more:
    dependencies  24.2Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:

  Warning: 'as(<dsyMatrix>, "dspMatrix")' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Running examples in 'RSDA-Ex.R' failed
The error most likely occurred in:

> ### Name: abalone
> ### Title: SODAS XML data file.
> ### Aliases: abalone
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(abalone)
> res <- sym.pca(abalone, 'centers')
Error in get(x, envir = ns, inherits = FALSE) : 
  object 'tbl_subset_col' not found
Calls: sym.pca ... %in% -> [ -> [.symbolic_tbl -> getFromNamespace -> get
Execution halted
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 60-64 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
object 'tbl_subset_col' not found
--- failed re-building 'introduction.Rmd'

SUMMARY: processing the following file failed:
  'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  standalone.c:160:301: warning: format '%ld' expects argument of type 'long int', but argument 16 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  Rserv.c:3788:97: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  Rserv.c:4133:62: warning: format '%lx' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  Rserv.c:4435:118: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  Rserv.c:4804:106: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  Rserv.c:4824:147: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  Rserv.c:4836:114: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  Rserv.c:4864:121: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  Rserv.c:4870:139: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  qap_encode.c:142:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'rlen_t' {aka 'long long int'} [-Wformat=]
  websockets.c:513:119: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
See 'd:/Rcompile/CRANpkg/local/4.3/Rserve.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
installed size is 15.1Mb
  sub-directories of 1Mb or more:
    libs  14.1Mb
GNU make is a SystemRequirements.
Note: information on .o files for x64 is not available
File 'd:/Rcompile/CRANpkg/lib/4.3/Rserve/libs/x64/Rserve.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'rand', possibly from 'rand' (C)
  Found 'srand', possibly from 'srand' (C)
File 'Rserve/libs/x64/Rserve.dll':
  Found non-API calls to R: 'R_Interactive', 'R_Visible',
    'Rf_initialize_R', 'setup_Rmainloop'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    R      1.7Mb
    doc    2.4Mb
    help   1.4Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
installed size is 15.8Mb
  sub-directories of 1Mb or more:
    R      1.6Mb
    doc    4.8Mb
    libs   8.8Mb
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
Specified C++14: please drop specification unless essential
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    lib    2.0Mb
    libs   4.2Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is 15.3Mb
  sub-directories of 1Mb or more:
    libs  14.9Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/rswipl.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    R           1.3Mb
    bootstrap   1.6Mb
    doc         1.2Mb
    help        2.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    rmarkdown   6.6Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data      3.4Mb
    extdata   1.4Mb
    libs      1.3Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is 11.3Mb
  sub-directories of 1Mb or more:
    doc    7.8Mb
    libs   2.6Mb
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'cmdstanr'
Specified C++14: please drop specification unless essential
Unknown package 'cmdstanr' in Rd xrefs
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    R      3.0Mb
    libs   1.1Mb
Specified C++11: please drop specification unless essential
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   3.8Mb
    libs   1.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) tracker.Rd:70: Escaped LaTeX specials: \&
checkRd: (-1) tracker.Rd:73: Escaped LaTeX specials: \&
S3 methods shown with full name in documentation object 'printHTML.trackInfo':
  'printHTML.trackInfo'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
checkRd: (-1) run.jags.study.Rd:67: Escaped LaTeX specials: \$
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc   4.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package which this enhances but not available for checking: 'glmmADMB'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'gpuR'
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    include   5.2Mb
installed size is 10.6Mb
  sub-directories of 1Mb or more:
    include   5.0Mb
    libs      5.2Mb
Problems with news in 'NEWS.md':
No news entries found.
S3 methods shown with full name in documentation object 'matmult':
  '%*%.rv'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rWCVPdata'
Specified C++11: please drop specification unless essential
installed size is 10.7Mb
  sub-directories of 1Mb or more:
    java  10.7Mb
'LazyData' is specified without a 'data' directory
File 'RWinEdt/R/zzz.R':
  .onAttach calls:
    writeLines(edtFile, con = send2RedtLoc)
    writeLines(edtFile, con = send2RedtLoc)

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) mapBubbles.Rd:62: Escaped LaTeX specials: \$
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   5.0Mb
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'unix'
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
ggplot:
  function(data, mapping, ..., environment)
ggplot.qqnorm.spss:
  function(x, plottype, line, l.col, ...)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  ../src/s2/s2shape_index.h:276:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
  ../src/s2/s2builder_graph.h:182:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
See 'd:/Rcompile/CRANpkg/local/4.3/s2.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    libs   5.4Mb
checkRd: (-1) BootsChapt.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) SemiparChangePoint.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) schapt.Rd:44: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/saeHB.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) SAM.Rd:67: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:59: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:84: Escaped LaTeX specials: \# \$
checkRd: (-1) samr.Rd:88: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:92: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) samr.assess.samplesize.plot.Rd:12: Escaped LaTeX specials: \#
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    libs   3.3Mb
Specified C++11: please drop specification unless essential
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    doc    2.3Mb
    help   3.4Mb
    libs   1.3Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'santoku-cast':
  'santoku_cast_common.default' 'santoku_cast_common.double'
  'santoku_cast_common.Date' 'santoku_cast_common.POSIXct'
  'santoku_cast_common.ts' 'santoku_cast_common.zoo'
  'santoku_cast_common.integer64' 'santoku_cast_common.hexmode'
  'santoku_cast_common.octmode'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) generef.Rd:29: Escaped LaTeX specials: \&
'library' or 'require' call to 'progress' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    bin   5.8Mb
Found the following significant warnings:
  src/memory/shared_ptr.hpp:168:15: warning: pointer used after 'void operator delete(void*)' [-Wuse-after-free]
See 'd:/Rcompile/CRANpkg/local/4.3/sass.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 12.2.0'
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc    1.7Mb
    libs   3.0Mb
GNU make is a SystemRequirements.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc    3.9Mb
    libs   1.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Updated help pages with examples
    Updated conjugate model sampler
Specified C++11: please drop specification unless essential
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   3.9Mb
    libs   1.2Mb
'LazyData' is specified without a 'data' directory
Packages which this enhances but not available for checking:
  'gurobi', 'Rcplex', 'pogs'
'LazyData' is specified without a 'data' directory
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    R   5.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) x.oreo.Rd:48: Escaped LaTeX specials: \_ \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'DuoClustering2018'
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Unexported object imported by a ':::' call: 'simplifyEnrichment:::is_GO_id'
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'plot':
  'plot.discretization'

S3 methods shown with full name in documentation object 'predict':
  'predict.discretization' 'predict.reject_infered'

S3 methods shown with full name in documentation object 'summary':
  'summary.discretization'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error(s) in re-building vignettes:
--- re-building 'appendix_tree_biasedness.Rmd' using rmarkdown
--- finished re-building 'appendix_tree_biasedness.Rmd'

--- re-building 'figure1.Rmd' using rmarkdown
--- finished re-building 'figure1.Rmd'

--- re-building 'figure2.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'figure2.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'figure2.Rmd'


--- re-building 'scoringTools.Rmd' using rmarkdown
--- finished re-building 'scoringTools.Rmd'

SUMMARY: processing the following files failed:
  'figure2.Rmd' 'figure3.Rmd'

Error: Vignette re-building failed.
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpAF84F6\file33bc4fd06bb0'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'scpoissonmodel.Rmd' using rmarkdown
Quitting from lines 61-72 (scpoissonmodel.Rmd) 
Warning in dev.off(dv) : processing of the plot ran out of memory
Error: processing vignette 'scpoissonmodel.Rmd' failed with diagnostics:
cannot allocate vector of size 4.9 Mb
--- failed re-building 'scpoissonmodel.Rmd'

SUMMARY: processing the following file failed:
  'scpoissonmodel.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
checkRd: (-1) simulateSNPs.Rd:46: Escaped LaTeX specials: \& \& \&
checkRd: (-1) simulateSNPs.Rd:80: Escaped LaTeX specials: \& \& \&
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'consistency-tests.Rmd' using rmarkdown
--- finished re-building 'consistency-tests.Rmd'

--- re-building 'debit.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'debit.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'debit.Rmd'



--- re-building 'infrastructure.Rmd' using rmarkdown
--- finished re-building 'infrastructure.Rmd'

--- re-building 'related.Rmd' using rmarkdown
--- finished re-building 'related.Rmd'

--- re-building 'rounding.Rmd' using rmarkdown
--- finished re-building 'rounding.Rmd'

--- re-building 'wrangling.Rmd' using rmarkdown
--- finished re-building 'wrangling.Rmd'

SUMMARY: processing the following files failed:
  'debit.Rmd' 'grim.Rmd' 'grimmer.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'INLA'
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   3.7Mb
Package unavailable to check Rd xrefs: 'INLA'
Running examples in 'sdmvspecies-Ex.R' failed
The error most likely occurred in:

> ### Name: pickMean
> ### Title: pickMean
> ### Aliases: pickMean
> 
> ### ** Examples
> 
> # load the sdmvspecies library
> library("sdmvspecies")
> library("raster")
Loading required package: sp
> # find package's location
> package.dir <- system.file(package="sdmvspecies")
> # let see where is our sdmvspecies is installed in
> package.dir
[1] "D:/RCompile/CRANpkg/lib/4.3/sdmvspecies"
> # find env dir under the package's location
> env.dir <- paste(package.dir, "/external/env/", sep="")
> # let see env dir
> env.dir
[1] "D:/RCompile/CRANpkg/lib/4.3/sdmvspecies/external/env/"
> # get the environment raster file
> files <- list.files(path=env.dir, pattern="*.bil$", full.names=TRUE)
> # make raster stack
> env.stack <- stack(files)
> # run pick mean
> species.raster <- pickMean(env.stack)
Error: std::bad_alloc
Execution halted
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'doptimal.Rnw' using Sweave
--- finished re-building 'doptimal.Rnw'

--- re-building 'dwd.Rnw' using Sweave
--- finished re-building 'dwd.Rnw'


Fatal error: couldn't allocate node stack


--- re-building 'logcheby.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 301
--- finished re-building 'logcheby.Rnw'

--- re-building 'lovasz.Rnw' using Sweave
--- finished re-building 'lovasz.Rnw'

--- re-building 'maxcut.Rnw' using Sweave
--- finished re-building 'maxcut.Rnw'

--- re-building 'maxkcut.Rnw' using Sweave
--- finished re-building 'maxkcut.Rnw'

--- re-building 'minelips.Rnw' using Sweave
--- finished re-building 'minelips.Rnw'

--- re-building 'nearcorr.Rnw' using Sweave
--- finished re-building 'nearcorr.Rnw'

--- re-building 'toeplitz.Rnw' using Sweave
--- finished re-building 'toeplitz.Rnw'

SUMMARY: processing the following files failed:
  'etp.Rnw' 'gpp.Rnw' 'lmi.Rnw'

Error: Vignette re-building failed.
Execution halted
Specified C++11: please drop specification unless essential
Packages suggested but not available for checking:
  'xbioc', 'MuSiC', 'seAMLessData'
'LazyData' is specified without a 'data' directory
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    R   8.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    R      1.5Mb
    libs   2.0Mb
GNU make is a SystemRequirements.
Package which this enhances but not available for checking: 'doMC'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
--- finished re-building 'introduction.Rmd'

--- re-building 'reproducibility.Rmd' using rmarkdown
Warning in grDevices::dev.off() : libpng: Out of memory
Warning in grDevices::dev.off() : libpng: Out of memory
insufficient memory
Warning in dev.off(dv) : processing of the plot ran out of memory
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'reproducibility.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'reproducibility.Rmd'

SUMMARY: processing the following file failed:
  'reproducibility.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Running 'testthat.R' [0s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  Fatal error: couldn't allocate node stack
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpCQjN7K\filebba4703a5a58'
Running examples in 'seewave-Ex.R' failed
The error most likely occurred in:

> ### Name: smoothw
> ### Title: A function to tentativily smooth a time wave
> ### Aliases: smoothw
> ### Keywords: ts
> 
> ### ** Examples
> 
> # An example to show that smoothw() may change
> # the frequency content of your sound
> data(orni)
> orni2 <- smoothw(orni, wl=2, out="Wave")
> orni10 <- smoothw(orni, wl=10, out="Wave")
> orni50 <- smoothw(orni, wl=50, out="Wave")
Error: cannot allocate vector of size 62 Kb
Execution halted
Error(s) in re-building vignettes:
--- re-building 'v01_preparing_data.Rmd' using rmarkdown
--- finished re-building 'v01_preparing_data.Rmd'

--- re-building 'v02_run_segclust2d.Rmd' using rmarkdown
Error in readRDS(mapfile) : error reading from connection
Error: processing vignette 'v02_run_segclust2d.Rmd' failed with diagnostics:
unable to load R code in package 'evaluate'
--- failed re-building 'v02_run_segclust2d.Rmd'

--- re-building 'v03_explore_outputs.Rmd' using rmarkdown
--- finished re-building 'v03_explore_outputs.Rmd'

SUMMARY: processing the following file failed:
  'v02_run_segclust2d.Rmd'

Error: Vignette re-building failed.
Execution halted
Error: cannot allocate vector of size 3.3 Mb
Call sequence:
8: (function (n) 
   {
       if (existsInFrame(n, envenv)) 
           envenv[[n]]
       else {
           e <- mkenv()
           envenv[[n]] <- e
           key <- env[[n]]
           ekey <- if (is.list(key)) 
               key$eagerKey
           else key
           data <- lazyLoadDBfetch(ekey, datafile, compressed, envhook)
           parent.env(e) <- if (!is.null(data$enclos)) 
               data$enclos
           else emptyenv()
           list2env(data$bindings, e)
           if (!is.null(data$attributes)) 
               attributes(e) <- data$attributes
           if (!is.null(data$isS4) && data$isS4) 
               .Internal(setS4Object(e, TRUE, TRUE))
           if (is.list(key)) {
               expr <- quote(lazyLoadDBfetch(KEY, datafile, compressed, 
                   envhook))
               .Internal(makeLazy(names(key$lazyKeys), key$lazyKeys, 
                   expr, parent.env(environment()), e))
    
Execution halted
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/rlang/libs/x64/rlang.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
10: inDL(x, as.logical(local), as.logical(now), ...)
9: dyn.load(file, DLLpath = DLLpath, ...)
8: library.dynam(lib, package, package.lib)
7: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Package required but not available: 'OasisR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack
Incorrect (un)loading of package shared object.
Error in sys.source(codeFile, env, keep.source = keep.source, keep.parse.data = keep.parse.data) : 
  lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
In addition: Warning message:
In sys.source(codeFile, env, keep.source = keep.source, keep.parse.data = keep.parse.data) :
  internal error -4 in R_decompress1
Error: unable to load R code in package 'compiler'
Execution halted
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [13s] NOTE
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running examples in 'segregation-Ex.R' failed
The error most likely occurred in:

> ### Name: ipf
> ### Title: Adjustment of marginal distributions using iterative
> ###   proportional fitting
> ### Aliases: ipf
> 
> ### ** Examples
> 
> # adjusts the marginals of group and unit categories so that
> # schools00 has similar marginals as schools05
> adj <- ipf(schools00, schools05, "race", "school", weight = "n")
Warning in create_common_data(d1, d2, group, unit) :
  IPF procedure removed 335 units from source, this likely reduced the sample size (check columns n_source and n_target)
Warning in create_common_data(d1, d2, group, unit) :
  IPF procedure removed 210 units from target, this likely reduced the sample size (check columns n_source and n_target)
[IPF 1/1] Error in forderv(byval, sort = keyby, retGrp = TRUE) : 
  Failed to allocate TMP or UGRP or they weren't cache line aligned: nth=2
Calls: ipf -> ipf_compute -> [ -> [.data.table -> forderv
Execution halted
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/magrittr/libs/x64/magrittr.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous>
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Running massageExamples to create 'selectiongain-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'min.abs':
  'min.abs'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate memory for pointer stack

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) escape.Rd:28: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmpk7GuQ0\file22a9459ea1d78'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fahst.rd:39: Escaped LaTeX specials: \^
checkRd: (-1) fahst.rd:36: Escaped LaTeX specials: \^
checkRd: (-1) fasnt.rd:46: Escaped LaTeX specials: \^
checkRd: (-1) fasnt.rd:42: Escaped LaTeX specials: \^
checkRd: (-1) fasnt.rd:43: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:49: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:44: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:45: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:46: Escaped LaTeX specials: \^
checkRd: (-1) hsortplot.rd:24: Escaped LaTeX specials: \^
checkRd: (-1) nappesortplot.Rd:30: Escaped LaTeX specials: \^
checkRd: (-1) nappesortplot.Rd:28: Escaped LaTeX specials: \^
checkRd: (-1) plot.fahst.rd:45: Escaped LaTeX specials: \^
checkRd: (-1) plot.fasnt.Rd:47: Escaped LaTeX specials: \^
checkRd: (-1) plot.fast.Rd:45: Escaped LaTeX specials: \^
checkRd: (-1) print.fahst.rd:22: Escaped LaTeX specials: \^
checkRd: (-1) print.fasnt.Rd:22: Escaped LaTeX specials: \^
checkRd: (-1) print.fast.Rd:22: Escaped LaTeX specials: \^
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    doc    6.4Mb
    libs   1.8Mb
'LazyData' is specified without a 'data' directory
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpG0lluD\file3016c4de12a3c'
Package suggested but not available for checking: 'doMC'
GNU make is a SystemRequirements.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   4.7Mb
    libs   1.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'PedComp.Rmd' using rmarkdown
--- finished re-building 'PedComp.Rmd'

--- re-building 'quick_start_example1.rmd' using rmarkdown
--- finished re-building 'quick_start_example1.rmd'

--- re-building 'vignette-age.Rmd' using rmarkdown
Warning in grep("Local TeX Live \\([0-9]+) is older than remote repository \\([0-9]+)",  :
  unable to translate 'Can't load 'C:\Users\CRAN\AppData\Roaming\TinyTeX\tlpkg\tlperl\lib/auto/Storable/Storable.dll' for module Storable: load_file:Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren at C:\Users\CRAN\AppData\Roaming\TinyTeX\tlpkg\tlperl\l...' to a wide string
Warning in grep("Local TeX Live \\([0-9]+) is older than remote repository \\([0-9]+)",  :
  input string 1 is invalid
Error: processing vignette 'vignette-age.Rmd' failed with diagnostics:
'CreateProcess' failed to run 'C:\Users\CRAN\AppData\Roaming\TinyTeX\bin\win32\tlmgr.bat update --all --self'
--- failed re-building 'vignette-age.Rmd'


Error in readRDS(mapfile) : error reading from connection
Calls: loadNamespace -> lazyLoad -> lazyLoadDBexec -> readRDS
Execution halted
SUMMARY: processing the following files failed:
  'vignette-age.Rmd' 'vignette-main.Rmd' 'flowchart.pdf.asis'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpsVUlK4\file10654305845a6'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpsVUlK4\file10654305845a6'
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'Introduction.Rmd' using rmarkdown
--- finished re-building 'Introduction.Rmd'

--- re-building 'Methanol.Rmd' using rmarkdown
Quitting from lines 65-68 (Methanol.Rmd) 
Error: processing vignette 'Methanol.Rmd' failed with diagnostics:
cannot allocate vector of size 25.3 Mb
--- failed re-building 'Methanol.Rmd'

SUMMARY: processing the following file failed:
  'Methanol.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpOwbtTn\file1b4981e9817a4'
checkRd: (-1) SEset_to_network.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) network_to_SEset.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) network_to_path.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) path_to_network.Rd:29: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    doc   5.1Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/sf.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/mvtnorm/libs/x64/mvtnorm.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
15: inDL(x, as.logical(local), as.logical(now), ...)
14: dyn.load(file, DLLpath = DLLpath, ...)
13: library.dynam(lib, package, package.lib)
12: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
11: asNamespace(ns)
10: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
        .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
9: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
8: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
7: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
5: loadNamespace(i, c(lib.loc, .libPaths()), v
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack
Running massageExamples to create 'sft-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Specified C++11: please drop specification unless essential
Skipping checking math rendering: package 'V8' unavailable
Warning in regexpr(re, txt) :
  TRE pattern compilation error 'Out of memory'
Error in regexpr(re, txt) : 
  invalid regular expression '(\\S4method\{([._[:alnum:]]*|\$|\[\[?|\+|\-|\*|\/|\^|<=?|>=?|!=?|==|\&|\||\%[[:alnum:][:punct:]]*\%)\}\{((([._[:alnum:]]+|`[^`]+`),)*([._[:alnum:]]+|`[^`]+`))\})', reason 'Out of memory'
Calls: <Anonymous> ... .parse_usage_as_much_as_possible -> .dquote_method_markup -> regexpr
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Error: package 'Matrix' could not be loaded
Call sequence:
3: stop(gettextf("package %s could not be loaded", sQuote(pkg)), 
       call. = FALSE, domain = NA)
2: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc, 
       .libPaths()))
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/utils/libs/x64/utils.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... config_val_to_logical -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Fatal error: couldn't allocate node stack
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
Running examples in 'sgmodel-Ex.R' failed
The error most likely occurred in:

> ### Name: sgmodel
> ### Title: Sgmodel
> ### Aliases: sgmodel
> 
> ### ** Examples
> 
> model <- sgmodel(grid= 100, rho = 0.2, sigma = 0.02)
> 
> grid <- 200
> utiltype <- "CRRA"
> utilparam <- 4
> A <- 1
> depre <- 0.03
> discount <- 0.95
> prod <- 0.3
> states <- 5
> m <- 10
> rho <- 0.2
> sigma <- 0.02
> model <- sgmodel(grid, utiltype, utilparam, A, depre, discount, prod, states, m, rho, sigma)
Error: cannot allocate vector of size 1.5 Mb
Execution halted
'LazyData' is specified without a 'data' directory
Running examples in 'sgof-Ex.R' failed
The error most likely occurred in:

> ### Name: summary.BY
> ### Title: Summary of a BY object
> ### Aliases: summary.BY
> ### Keywords: htest correlation Benjamini-Yekutieli FDR BY multi-testing
> 
> ### ** Examples
> 
> 
> 
> res<-BY(Hedenfalk$x)
Error in order(x, na.last = na.last, decreasing = decreasing, method = "radix") : 
  Failed to allocate working memory for xtmp. Requested 3167 * 8 bytes
Calls: BY -> by -> sort -> sort.default -> sort.int -> order
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data   6.7Mb
During startup - Warning messages:
1: In (function (n)  : internal error -4 in R_decompress1
2: package "methods" in options("defaultPackages") was not found 
checkRd: (-1) gPLS.Rd:72: Escaped LaTeX specials: \^
checkRd: (-1) gPLS.Rd:74: Escaped LaTeX specials: \^
checkRd: (-1) sPLS.Rd:67: Escaped LaTeX specials: \^
checkRd: (-1) sPLS.Rd:69: Escaped LaTeX specials: \^
checkRd: (-1) sgPLS.Rd:75: Escaped LaTeX specials: \^
checkRd: (-1) sgPLS.Rd:77: Escaped LaTeX specials: \^
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    R     1.3Mb
    doc   5.0Mb
Error: .onLoad failed in loadNamespace() for 'vctrs', details:
  call: fun(libname, pkgname)
  error: lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/vctrs/R/vctrs.rdb' is corrupt
Execution halted
Error: there is no package called 'vctrs'
Call sequence:
8: doWithOneRestart(return(expr), restart)
7: withOneRestart(expr, restarts[[1L]])
6: withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
4: namespaceImport(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), 
       versionCheck = vI[[j]]), from = package, except = i$except)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running examples in 'sgt-Ex.R' failed
The error most likely occurred in:

> ### Name: summary.sgtest
> ### Title: Summary the Maximum-Likelihood Estimation with the Skewed
> ###   Generalized T Distribution
> ### Aliases: summary.sgtest coef.summary.sgtest
> ### Keywords: models
> 
> ### ** Examples
> 
> # SINGLE VARIABLE ESTIMATION:
> ### generate random variable
> set.seed(7900)
> n = 1000
> x = rsgt(n, mu = 2, sigma = 2, lambda = -0.25, p = 1.7, q = 7)
> 
> ### Get starting values and estimate the parameter values
> start = list(mu = 0, sigma = 1, lambda = 0, p = 2, q = 10)
> result = sgt.mle(X.f = ~ x, start = start, method = "nlminb")
> print(result)
Skewed Generalized T MLE Fit
Best Result with nlminb Maximization
Convergence Code 0: Successful Convergence
Iterations: 24, Log-Likelihood: -2076.966 
Estimate(s):
     mu   sigma  lambda       p       q 
 1.9735  2.0075 -0.2761  1.7199  7.7856 
> print(summary(result))
Skewed Generalized T MLE Fit
Best Result with nlminb Maximization
Convergence Code 0: Successful Convergence
Iterations: 24, Log-Likelihood: -2076.966 

          Est. Std. Err.       z  P>|z|    
mu      1.9735    0.0634 31.1041 0.0000 ***
sigma   2.0075    0.0594 33.7782 0.0000 ***
lambda -0.2761    0.0410 -6.7376 0.0000 ***
p       1.7199    0.2673  6.4333 0.0000 ***
q       7.7856    7.5662  1.0290 0.3035    
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  12.54 1.12 13.72 NA NA 
> grDevices::dev.off()
Error in grDevices::dev.off() : 
  internal compression error -4 in PDF_endpage
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Other ideas
Package required but not available: 'RSelenium'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error in gzfile(file, "rb") : cannot open the connection
In addition: Warning message:
In gzfile(file, "rb") :
  cannot open compressed file 'D:/RCompile/recent/R/library/compiler/R/compiler.rdx', probable reason 'Not enough space'
Error: unable to load R code in package 'compiler'
Execution halted
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
9: inDL(x, as.logical(local), as.logical(now), ...)
8: dyn.load(file, DLLpath = DLLpath, ...)
7: library.dynam(lib, package, package.lib)
6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack

The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Error in namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,  : 
  lazy-load database 'D:/RCompile/recent/R/library/utils/R/utils.rdb' is corrupt
Calls: <Anonymous>
Execution halted
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rCOSA'
Package unavailable to check Rd xrefs: 'rCOSA'
Package suggested but not available for checking: 'hydromad'
Specified C++11: please drop specification unless essential
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    doc       1.7Mb
    extdata   4.2Mb
'LazyData' is specified without a 'data' directory
installed size is  7.7Mb
  sub-directories of 1Mb or more:
    www   7.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    www   9.4Mb
'LazyData' is specified without a 'data' directory
installed size is 20.4Mb
  sub-directories of 1Mb or more:
    www  19.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    www   7.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 21.1Mb
  sub-directories of 1Mb or more:
    shinyApp  21.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
installed size is 10.0Mb
  sub-directories of 1Mb or more:
    R     1.6Mb
    www   7.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 11.2Mb
  sub-directories of 1Mb or more:
    help   2.5Mb
    www    8.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    help      1.7Mb
    libs      1.0Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    doc   6.2Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Error(s) in re-building vignettes:
--- re-building 'SimPhe.Rmd' using rmarkdown
Quitting from lines 77-83 (SimPhe.Rmd) 
Error: processing vignette 'SimPhe.Rmd' failed with diagnostics:
'data' must be of a vector type, was 'NULL'
--- failed re-building 'SimPhe.Rmd'

SUMMARY: processing the following file failed:
  'SimPhe.Rmd'

Error: Vignette re-building failed.
Execution halted
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    simpleCache [0.0.1]
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'fg_step_tab_pp'
Running 'test-all.R' [33s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > if(require(testthat)) {
  + 
  +     test_check("simr")
  + }
  Loading required package: testthat
  Loading required package: simr
  Loading required package: lme4
  Loading required package: Matrix
  
  Attaching package: 'simr'
  
  The following object is masked from 'package:lme4':
  
      getData
  
  The following object is masked from 'package:testthat':
  
      compare
  
  boundary (singular) fit: see help('isSingular')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 113 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_modify.R:12:5'): errors are thrown ───────────────────────────
  `sigma(fglm) <- 8` did not throw an error.
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 113 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Specified C++14: please drop specification unless essential
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Version (Date)
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    R      2.1Mb
    libs   1.5Mb
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/sisireg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:

======== End of example output (where/before crash/hang up occured ?) ========
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'kmndirs'
Unavailable namespace imported from by a ':::' call: 'kmndirs'
  See the note in ?`:::` about the use of this operator.
GNU make is a SystemRequirements.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### ** Examples
> 
> region_a <- region("A", center = c(20, 50), radius = 20)
> region_b <- region("B", polygon = list(c(50, 40), c(70, 40), c(70, 60), c(50, 60)))
> plot_map(region_a, region_b)
> 
> # note that area won't be *exactly* equal to pi*r^2:
> #   https://stackoverflow.com/a/65280376
> area(region_a)
[1] 1256.063
> 
> area(region_b)
[1] 400
> 
> 
> 
> cleanEx()
> nameEx("check_env")
> ### * check_env
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: check_env
> ### Title: Check that the active Python environment is setup for slendr
> ### Aliases: check_env
> 
> ### ** Examples
> 
> ## Don't show: 
> check_dependencies(python = TRUE) # make sure dependencies are present
======== End of example output (where/before crash/hang up occured ?) ========
checkRd: (-1) ex0723.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ex0915.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) ex1515.Rd:4: Escaped LaTeX specials: \&
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc   3.7Mb
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/slp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gurobi'
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
checkRd: (-1) customerRetentionDemographics.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) customerRetentionDemographics.Rd:11: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:12: Escaped LaTeX specials: \$ \$
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checkRd: (-1) customerRetentionDemographics.Rd:15: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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installed size is  6.6Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
    libs   1.1Mb
'LazyData' is specified without a 'data' directory
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'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) hoods2dsmooth.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) kernel2dmeitsjer.Rd:75: Escaped LaTeX specials: \&
checkRd: (-1) kernel2dsmooth.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) smoothie-package.Rd:42: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'doMC'
Specified C++11: please drop specification unless essential
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    doc    3.3Mb
    libs   1.7Mb
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'lseq'
Specified C++11: please drop specification unless essential
Warnings in file 'R/replace_special_characters_internal.R':
  unable to translate '<U+00C4>' to native encoding
  unable to translate '<U+00D6>' to native encoding
  unable to translate '<U+00DC>' to native encoding
  unable to translate '<U+00E4>' to native encoding
  unable to translate '<U+00F6>' to native encoding
  unable to translate '<U+00FC>' to native encoding
  unable to translate '<U+00DF>' to native encoding
  unable to translate '<U+00C6>' to native encoding
  unable to translate '<U+00E6>' to native encoding
  unable to translate '<U+00D8>' to native encoding
  unable to translate '<U+00F8>' to native encoding
  unable to translate '<U+00C5>' to native encoding
  unable to translate '<U+00E5>' to native encoding
  unable to translate '<U+00C6>' to native encoding
  unable to translate '<U+00E6>' to native encoding
  unable to translate '<U+00D8>' to native encoding
  unable to translate '<U+00F8>' to native encoding
  unable to translate '<U+00C6>' to native encoding
  unable to translate '<U+00E6>' to native encoding
  unable to translate '<U+00D8>' to native encoding
  unable to translate '<U+00F8>' to native encoding
  unable to translate '<U+00C5>' to native encoding
  unable to translate '<U+00E5>' to native encoding
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    R     3.2Mb
    doc   1.1Mb
checkRd: (-1) llwrPTF.Rd:7: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  '.solveEnv'
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   1.3Mb
    doc    2.2Mb
    libs   1.7Mb
S3 methods shown with full name in documentation object 'plot.predictions':
  'plot.predictions'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot.som.Rd:27: Escaped LaTeX specials: \_
checkRd: (-1) som.Rd:128: Escaped LaTeX specials: \_
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'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'SciencesPo'
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   3.9Mb
    doc    1.0Mb
Package suggested but not available for checking: 'r2cytoscape'
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   4.7Mb
    libs   1.1Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    R      2.7Mb
    libs   1.7Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    R      1.5Mb
    java   3.4Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Error(s) in re-building vignettes:
--- re-building 'sparsegl.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'sparsegl.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'sparsegl.Rmd'

SUMMARY: processing the following file failed:
  'sparsegl.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is 13.2Mb
  sub-directories of 1Mb or more:
    libs  12.6Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'INLA'
Package suggested but not available for checking: 'INLA'
installed size is 14.5Mb
  sub-directories of 1Mb or more:
    libs  13.5Mb
Specified C++11: please drop specification unless essential
checkRd: (-1) sarorderedprobit.Rd:84: Escaped LaTeX specials: \#
Error(s) in re-building vignettes:
--- re-building 'SpatialFiltering.Rmd' using rmarkdown
--- finished re-building 'SpatialFiltering.Rmd'

--- re-building 'nb_igraph.Rmd' using rmarkdown
--- finished re-building 'nb_igraph.Rmd'

--- re-building 'sids_models.Rmd' using rmarkdown
Warning in dev.off(dv) : processing of the plot ran out of memory
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  unable to allocate bitmap
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  opening device failed
Quitting from lines 117-120 (sids_models.Rmd) 
Error: processing vignette 'sids_models.Rmd' failed with diagnostics:
unable to start png() device
--- failed re-building 'sids_models.Rmd'

SUMMARY: processing the following file failed:
  'sids_models.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   2.6Mb
    help   1.7Mb
    libs   1.1Mb
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/colourvalues/libs/x64/colourvalues.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
7: inDL(x, as.logical(local), as.logical(now), ...)
6: dyn.load(file, DLLpath = DLLpath, ...)
5: library.dynam(lib, package, package.lib)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, 
       .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problem found in 'owin.object.Rd'
Depends: includes the non-default packages:
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat.linnet', 'spatstat.data', 'spatstat',
  'rpanel', 'tcltk'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom',
  'spatstat.random', 'spatstat.explore', 'spatstat.model',
  'spatstat.linnet', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom',
  'spatstat.random', 'spatstat.explore', 'spatstat.model', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.geom', 'spatstat.random',
  'spatstat.explore', 'nlme', 'rpart'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problem found in 'predict.rppm.Rd'
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.geom', 'spatstat.random',
  'spatstat.explore', 'spatstat.model', 'spatstat.linnet'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'spDataLarge'
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    data     2.6Mb
    shapes   3.2Mb
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   4.3Mb
    help   1.5Mb
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    doc   5.8Mb
    etc   1.4Mb
Error in if (grepl("RD[ABX][1-9]", magic, useBytes = TRUE)) { : 
    argument is of length zero
  Calls: <Anonymous> -> checkRdaFiles
  In addition: Warning message:
  In readChar(con, 5L, useBytes = TRUE) : lzma decoder needed more memory
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 248-254 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
lazy-load database 'D:/RCompile/recent/R/library/datasets/data/Rdata.rdb' is corrupt
--- failed re-building 'introduction.Rmd'

SUMMARY: processing the following file failed:
  'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Warning in grepl(re_anchor(pattern), address) :
  TRE pattern compilation error 'Out of memory'
invalid regular expression '^(\".+\"|([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!#$%*/?|^{}`~&'+=_-]+)@([ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+\.)*[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-]+$', reason 'Out of memory'
problem found in 'relevant.features.p.Rd'
Running examples in 'speaq-Ex.R' failed
The error most likely occurred in:

> ### Name: BWR
> ### Title: BW ratio calculation
> ### Aliases: BWR
> 
> ### ** Examples
> 
> res=makeSimulatedData();
> X=res$data;
> groupLabel=res$label;
> peakList <- detectSpecPeaks(X,
+                             nDivRange = c(128),
+                             scales = seq(1, 16, 2),
+                             baselineThresh = 50000,
+                             SNR.Th = -1,
+                             verbose=FALSE
+ );
> resFindRef<- findRef(peakList);
> refInd <- resFindRef$refInd;
> maxShift = 50;
> Y <- dohCluster(X,
+                 peakList = peakList,
+                 refInd = refInd,
+                 maxShift  = maxShift,
+                 acceptLostPeak = TRUE, verbose=FALSE);
Warning in min(peakList) :
  no non-missing arguments to min; returning Inf
Warning in max(peakList) :
  no non-missing arguments to max; returning -Inf
Error in startP:(minpeakList - 1) : result would be too long a vector
Calls: dohCluster -> .withMaxShift -> hClustAlign
Execution halted
Error(s) in re-building vignettes:
--- re-building 'classic_speaq_vignette.Rmd' using rmarkdown
Warning in eng_r(options) :
  Failed to tidy R code in chunk 'Unaligned_spectral_plots'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

Warning in eng_r(options) :
  Failed to tidy R code in chunk 'Peak_detection'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

Warning in eng_r(options) :
  Failed to tidy R code in chunk 'Reference_finding'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

Warning in eng_r(options) :
  Failed to tidy R code in chunk 'Spectral_alignment'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

Quitting from lines 111-120 (classic_speaq_vignette.Rmd) 
Error: processing vignette 'classic_speaq_vignette.Rmd' failed with diagnostics:
result would be too long a vector
--- failed re-building 'classic_speaq_vignette.Rmd'

--- re-building 'speaq2_illustrations.Rmd' using rmarkdown
Quitting from lines 71-83 (speaq2_illustrations.Rmd) 
Error: processing vignette 'speaq2_illustrations.Rmd' failed with diagnostics:
invalid 'times' argument
--- failed re-building 'speaq2_illustrations.Rmd'

SUMMARY: processing the following files failed:
  'classic_speaq_vignette.Rmd' 'speaq2_illustrations.Rmd'

Error: Vignette re-building failed.
Execution halted
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Roadmap of specklestar package
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Specified C++11: please drop specification unless essential
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Error: package or namespace load failed for 'spectacles' in get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable):
 object '#HAS_DUPLICATE_CLASS_NAMES' not found
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    doc   4.8Mb
Error: .onLoad failed in loadNamespace() for 'rlang', details:
  call: readRDS(file)
  error: error reading from connection
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
checkRd: (-1) image.plot.Rd:78: Escaped LaTeX specials: \$
Running examples in 'spectralGraphTopology-Ex.R' failed
The error most likely occurred in:

> ### Name: cluster_k_component_graph
> ### Title: Cluster a k-component graph from data using the Constrained
> ###   Laplacian Rank algorithm Cluster a k-component graph on the basis of
> ###   an observed data matrix. Check out
> ###   https://mirca.github.io/spectralGraphTopology for code examples.
> ### Aliases: cluster_k_component_graph
> 
> ### ** Examples
> 
> library(clusterSim)
Loading required package: cluster
Loading required package: MASS
Warning in FUN(X[[i]], ...) : internal error 5 in R_decompress3
Error in FUN(X[[i]], ...) : 
  lazy-load database 'D:/RCompile/recent/R/library/datasets/data/Rdata.rdb' is corrupt
Calls: library ... library -> checkConflicts -> same.isFn -> vapply -> FUN
Execution halted
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack


A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Running examples in 'speechbr-Ex.R' failed
The error occurred in:


R version 4.3.0 beta (2023-04-07 r84200 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "speechbr"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> options(pager = "console")
> library('speechbr')
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Error: package or namespace load failed for 'speech' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fansi/libs/x64/fansi.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), doma
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error in library(speff2trial) : there is no package called 'speff2trial'
Execution halted
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate memory for pointer stack
Running massageExamples to create 'spfda-Ex.R' failed

 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Specified C++11: please drop specification unless essential
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpCMBWxs\filed56c5b291adf'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Error: package or namespace load failed for 'spidR' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/glue/libs/x64/glue.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain 
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) PimaIndiansDiabetes_long.Rd:14: Escaped LaTeX specials: \^
checkRd: (-1) PimaIndiansDiabetes_wide.Rd:16: Escaped LaTeX specials: \^
Fatal error: couldn't allocate memory for pointer stack
'LazyData' is specified without a 'data' directory
Found the following possibly unsafe calls:
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/recent/R/library/tools/libs/x64/tools.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Fatal error: couldn't allocate node stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Incorrect (un)loading of package shared object.
Error in readRDS(nsInfoFilePath) : error reading from connection
Calls: loadNamespace -> readRDS
Execution halted
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [2s] NOTE
Lost warning messages
Error: no more error handlers available (recursive errors?); invoking 'abort' restart
Execution halted
Loading this package had a fatal error status code 1
Loading log:
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Loading required package: rpart
Loading required package: nlme
Loading required package: splines
Error: package or namespace load failed for 'splinetree' in get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable):
 object '#HAS_DUPLICATE_CLASS_NAMES' not found
Execution halted
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Invalid citation information in 'inst/CITATION':
  Fatal error: couldn't allocate node stack
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Feature Changes
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Parallel computation will not perform. CPU cores in use: 1.

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Specified C++14: please drop specification unless essential
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    doc       1.1Mb
    extdata   2.6Mb
    libs      1.6Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    updates of 10th May 2021
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) shypEstFun.Rd:52: Escaped LaTeX specials: \$
checkRd: (-1) shypEstFun.Rd:54: Escaped LaTeX specials: \$
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc   5.3Mb
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
autoplot:
  function(object, ...)
autoplot.qts_sample:
  function(x, memberships, highlighted, with_animation, ...)

autoplot:
  function(object, ...)
autoplot.qts:
  function(x, highlighted_points, ...)

autoplot:
  function(object, ...)
autoplot.prcomp_qts:
  function(x, what, ...)

autoplot:
  function(object, ...)
autoplot.kma_qts:
  function(x, ...)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    doc   8.2Mb
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    shiny-squid   5.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 16.3Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    help   1.0Mb
    libs  13.7Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   5.7Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
estfun:
  function(x, ...)
estfun.ssym:
  function(object, ...)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
checkRd: (-1) Snacks.Rd:6: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) katrina.Rd:36: Escaped LaTeX specials: \&
installed size is 10.1Mb
  sub-directories of 1Mb or more:
    include   9.4Mb
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    libs   4.8Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    To do
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    doc   2.4Mb
    nc    1.7Mb
checkRd: (-1) multiCUMSUM.Rd:33: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   2.7Mb
    libs   1.4Mb
Package suggested but not available for checking: 'asreml'
Package suggested but not available for checking: 'asreml'
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'asreml'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following possibly unsafe calls:
File 'statnet.common/R/control.utilities.R':
  unlockBinding("snctrl", environment(snctrl))
  unlockBinding("snctrl", environment(update_my_snctrl))
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:

======== End of example output (where/before crash/hang up occured ?) ========
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    shiny-apps   6.1Mb
checkRd: (-1) stdGlm.Rd:93: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'INLA'
installed size is 14.5Mb
  sub-directories of 1Mb or more:
    libs  13.4Mb
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'stminsights-Ex.R' failed
The error most likely occurred in:

> ### Name: get_network
> ### Title: extract topic correlation network
> ### Aliases: get_network
> 
> ### ** Examples
> 
> 
> library(stm)
stm v1.3.6 successfully loaded. See ?stm for help. 
 Papers, resources, and other materials at structuraltopicmodel.com
> library(ggraph)
Loading required package: ggplot2
> library(quanteda)
Package version: 3.3.0
Unicode version: 13.0
ICU version: 69.1
Parallel computing: 2 of 56 threads used.
See https://quanteda.io for tutorials and examples.
> 
> # prepare data
> data <- corpus(gadarian, text_field = 'open.ended.response')
> docvars(data)$text <- as.character(data)
> data <- dfm(data, stem = TRUE, remove = stopwords('english'),
+             remove_punct = TRUE)
Warning: 'dfm.corpus()' is deprecated. Use 'tokens()' first.
Warning: '...' should not be used for tokens() arguments; use 'tokens()' first.
Warning: 'remove' is deprecated; use dfm_remove() instead
Warning: 'stem' is deprecated; use dfm_wordstem() instead
> out <- convert(data, to = 'stm')
> 
> # fit model
> gadarian_10 <- stm(documents = out$documents,
+                    vocab = out$vocab,
+                    data = out$meta,
+                    prevalence = ~ treatment + s(pid_rep),
+                    K = 10,
+                    max.em.its = 1, # reduce computation time for example
+                    verbose = FALSE)
> 
> # extract network
> stm_corrs <- get_network(model = gadarian_10,
+                          method = 'simple',
+                          labels = paste('Topic', 1:10),
+                          cutoff = 0.001,
+                          cutiso = TRUE)
Error in get_network(model = gadarian_10, method = "simple", labels = paste("Topic",  : 
  There are no (sufficiently high) correlations between the topics of this STM model.
Execution halted
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data   6.3Mb
installed size is 14.1Mb
  sub-directories of 1Mb or more:
    libs  12.6Mb
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Package suggested but not available for checking: 'StrathE2E2examples'
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    doc   5.0Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    libs   4.6Mb
Malformed Title field: should not end in a period.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is 33.2Mb
  sub-directories of 1Mb or more:
    libs  32.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'STRaitRazoR'
efpFunctional: multiple local function definitions for 'plotProcess'
  with different formal arguments
mefp.efp: multiple local function definitions for 'computeEmpProc' with
  different formal arguments
checkRd: (-1) SP2001.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) SP2001.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) SP2001.Rd:12: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'size.penalize':
  'size.penalize'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/SubtypeDrug.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    doc    3.3Mb
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
surfaceSimulate : phytransform: no visible global function definition
  for 'rescale'
Undefined global functions or variables:
  rescale
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    R      1.7Mb
    doc    2.2Mb
    libs   1.1Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) estweights.Rd:42: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'gurobi'
Specified C++11: please drop specification unless essential
Packages suggested but not available for checking:
  'survHEinla', 'survHEhmc', 'INLA'
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    R      1.2Mb
    data   1.9Mb
    doc    3.5Mb
Specified C++11: please drop specification unless essential
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    data  12.0Mb
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    doc   5.5Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:
--- re-building 'svHttp.Rmd' using rmarkdown
--- finished re-building 'svHttp.Rmd'
Specified C++11: please drop specification unless essential
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
checkRd: (-1) diabetes.Rd:18: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'swephRdata'
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Additional functions and data sets
    Amendments to functions
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    pre-release switchboard (2020 - 2021)
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'sylly.de', 'sylly.es'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   4.5Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'unix'
Specified C++11: please drop specification unless essential
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installed size is  5.2Mb
  sub-directories of 1Mb or more:
    R         1.3Mb
    extdata   3.1Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data   4.3Mb
    libs   1.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc   5.9Mb
checkRd: (-1) tmCtypes.Rd:22: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
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Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'designMatrices':
  'print.designMatrices'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) tapnet-package.Rd:40: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'tashudata'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'tbm_supplement.Rnw' using knitr

warning: solve(): system is singular (rcond: 1.93608e-21); attempting approx solution

warning: solve(): system is singular (rcond: 1.93608e-21); attempting approx solution

warning: solve(): system is singular; attempting approx solution
Quitting from lines 1015-1018 (tbm_supplement.Rnw) 
Error: processing vignette 'tbm_supplement.Rnw' failed with diagnostics:
cannot allocate buffer
--- failed re-building 'tbm_supplement.Rnw'

SUMMARY: processing the following file failed:
  'tbm_supplement.Rnw'

Error: Vignette re-building failed.
Execution halted
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is 12.7Mb
  sub-directories of 1Mb or more:
    doc  11.8Mb
Error(s) in re-building vignettes:
--- re-building 'tciu-LT-kimesurface.Rmd' using rmarkdown
Quitting from lines 159-160 (tciu-LT-kimesurface.Rmd) 
Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics:
could not find function "discrete_range"
--- failed re-building 'tciu-LT-kimesurface.Rmd'

--- re-building 'tciu-fMRI-analytics.Rmd' using rmarkdown
--- finished re-building 'tciu-fMRI-analytics.Rmd'

SUMMARY: processing the following file failed:
  'tciu-LT-kimesurface.Rmd'

Error: Vignette re-building failed.
Execution halted
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) R2txt.Rd:164: Escaped LaTeX specials: \#
checkRd: (-1) bct.Rd:18: Escaped LaTeX specials: \^
checkRd: (-1) bct.Rd:19: Escaped LaTeX specials: \^
checkRd: (-1) ineq.Rd:10: Escaped LaTeX specials: \&
checkRd: (-1) put.points.demo.Rd:39: Escaped LaTeX specials: \^
checkRd: (-1) run.cor.examp.Rd:10: Escaped LaTeX specials: \^
checkRd: (-1) run.cor.examp.Rd:31: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/telegram.bot.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    doc       3.7Mb
    libs      1.1Mb
    telemac   1.0Mb
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc   5.1Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/terra.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
installed size is 22.1Mb
  sub-directories of 1Mb or more:
    doc        1.0Mb
    libs       7.0Mb
    tessdata  14.0Mb
Package suggested but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package which this enhances but not available for checking: 'mnlogit'
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   5.2Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  7.5Mb
  sub-directories of 1Mb or more:
    data   2.6Mb
    doc    3.0Mb
    libs   1.2Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   5.6Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/textmineR.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data   1.1Mb
    rda    7.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    R      4.1Mb
    data   3.0Mb
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/threeBrain.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) CPdimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) CPdimensionalityplot.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) T2func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T2funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3dimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:26: Escaped LaTeX specials: \& \& \&
checkRd: (-1) TV.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) pcamean.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) threewayanova.Rd:24: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Initial Release (v0.1.0)
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Minor changes:
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    doc       2.1Mb
    extdata   4.5Mb
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/tiff.Rcheck/00install.out' for details.
installed size is 18.9Mb
  sub-directories of 1Mb or more:
    libs  16.6Mb
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### ** Examples
> 
> ## Don't show: 
> ctx <- tiledb_ctx(limitTileDBCores())
> ## End(Don't show)
> ## Not run: 
> ##D cfg <- tiledb_config()
> ##D cfg["vfs.s3.region"] <- "us-west-1"
> ##D ctx <- tiledb_ctx(cfg)
> ##D vfs <- tiledb_vfs()
> ##D tiledb_vfs_is_empty_bucket(vfs, "s3://tiledb-public-us-west-1/test-array-4x4")
> ## End(Not run)
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  8.61 0.31 8.8 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) compare.Rd:46: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
'LazyData' is specified without a 'data' directory
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   2.5Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 16.8Mb
  sub-directories of 1Mb or more:
    examples  12.6Mb
    include    3.6Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### ** Examples
> 
> ## Not run: 
> ##D data(Egambia)
> ##D design <- cbind(Intercept=rep(1, 30), TB=rep(c(0,1), each= 15))
> ##D library(limma)
> ##D fit <- eBayes( lmFit(Egambia[,-c(1:3)], design))
> ##D tt <- topTable(fit, coef=2, number=Inf, genelist=Egambia[,1:3] )
> ##D res <- tmodCERNOtest(tt$GENE_SYMBOL)
> ##D 
> ##D upset(res$ID, group.cutoff=.1, value="jaccard")
> ## End(Not run)
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  13.53 2.12 15.65 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'Rcampdf', 'Rpoppler', 'tm.lexicon.GeneralInquirer'
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'corpus.JSS.papers'
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    data   7.2Mb
Specified C++11: please drop specification unless essential
installed size is 24.9Mb
  sub-directories of 1Mb or more:
    R         5.2Mb
    help      1.6Mb
    include   1.5Mb
    libs     16.1Mb
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'toscaData'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(TPCselect)
  > 
  > test_check("TPCselect")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-TPC.R:25:3'): test the main functions (TPC) ──────────────────
  as.vector(TPC.fit$beta) (`actual`) not equal to `truebeta` (`expected`).
  
    `actual[1:8]`: 3.17 1.55 0.00 0.00 1.97 0.00 0.00 0.00
  `expected[1:8]`: 3.00 1.50 0.00 0.00 2.00 0.00 0.00 0.00
  
    `actual[197:200]`: 0.00 0.00 0.00 0.42
  `expected[197:200]`: 0.00 0.00 0.00 0.00
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:

======== End of example output (where/before crash/hang up occured ?) ========
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   2.4Mb
    doc    2.7Mb
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Enhancements
    Other changes
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'taxidata'
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  Warning: replacing previous import 'GPArotation::equamax' by 'psych::equamax' when loading 'traj'
  Warning: replacing previous import 'GPArotation::varimin' by 'psych::varimin' when loading 'traj'
See 'd:/Rcompile/CRANpkg/local/4.3/traj.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
installed size is 15.9Mb
  sub-directories of 1Mb or more:
    doc    2.1Mb
    libs  13.2Mb
Error(s) in re-building vignettes:
--- re-building 'tampolining.Rmd' using rmarkdown
Quitting from lines 142-160 (tampolining.Rmd) 
Error: processing vignette 'tampolining.Rmd' failed with diagnostics:
cannot allocate vector of size 15 Kb
--- failed re-building 'tampolining.Rmd'

SUMMARY: processing the following file failed:
  'tampolining.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:




SUMMARY: processing the following files failed:
  'egfr.Rmd' 'hla_mismatch_grade.Rmd' 'kidney_risk_scores.Rmd'
  'liver_recipient_scoring.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) dcc.Rd:227: Escaped LaTeX specials: \&
checkRd: (-1) seascorr.Rd:128: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'TreeDistData'
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    doc    5.0Mb
    libs   1.2Mb
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Bug fixes
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate node stack

See sections 'The INDEX file' and 'Package subdirectories' in the
'Writing R Extensions' manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for 'treemap' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/httpuv/libs/x64/httpuv.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
Specified C++11: please drop specification unless essential
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Re-running with no redirection of stdout/stderr.
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    datasets   1.6Mb
    doc        1.3Mb
    libs       1.1Mb
Loading required package: ape
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error: package or namespace load failed for 'treespace' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/httpuv/libs/x64/httpuv.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/fields/libs/x64/fields.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Error: package or namespace load failed for 'treetop':
 cannot allocate vector of size 1.2 Mb
Execution halted

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Fatal error: couldn't allocate memory for pointer stack
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [7s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(trendeval)
  > 
  > test_check("trendeval")
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-evaluate_aic.R:6:5'): evaluate_aic ─────────────────────────────
  Error in `model$fit(data)`: attempt to apply non-function
  Backtrace:
      ▆
   1. └─trendeval::evaluate_aic(model_lm, dat) at test-evaluate_aic.R:6:4
  ── Error ('test-evaluate_models.R:13:3'): evaluate_models returns with expected structure ──
  <vctrs_error_subscript_oob/vctrs_error_subscript/rlang_error/error/condition>
  Error in `tidyr::pivot_wider(result, names_from = "metric", values_from = "score")`: Can't subset columns that don't exist.
  ✖ Column `metric` doesn't exist.
  Backtrace:
       ▆
    1. ├─trendeval::evaluate_models(...) at test-evaluate_models.R:13:2
    2. │ ├─tidyr::pivot_wider(result, names_from = "metric", values_from = "score")
    3. │ └─tidyr:::pivot_wider.data.frame(result, names_from = "metric", values_from = "score")
    4. │   └─tidyr::build_wider_spec(...)
    5. │     └─tidyselect::eval_select(...)
    6. │       └─tidyselect:::eval_select_impl(...)
    7. │         ├─tidyselect:::with_subscript_errors(...)
    8. │         │ └─rlang::try_fetch(...)
    9. │         │   └─base::withCallingHandlers(...)
   10. │         └─tidyselect:::vars_select_eval(...)
   11. │           └─tidyselect:::as_indices_sel_impl(...)
   12. │             └─tidyselect:::as_indices_impl(...)
   13. │               └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg)
   14. │                 └─vctrs::vec_as_location(...)
   15. └─vctrs (local) `<fn>`()
   16.   └─vctrs:::stop_subscript_oob(...)
   17.     └─vctrs:::stop_subscript(...)
   18.       └─rlang::abort(...)
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
installed size is 16.6Mb
  sub-directories of 1Mb or more:
    data      1.3Mb
    extdata  14.8Mb
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 236-237 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
cannot allocate vector of size 2.7 Mb
--- failed re-building 'introduction.Rmd'

SUMMARY: processing the following file failed:
  'introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
Problems with news in 'NEWS.md':
No news entries found.
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    doc    3.9Mb
    libs   7.1Mb
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/StanHeaders/libs/x64/StanHeaders.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: suppressMessages ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack
GNU make is a SystemRequirements.
Error in readRDS(mapfile) : error reading from connection
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
Incorrect (un)loading of package shared object.
Warning in lapply(x, f) : internal error -4 in R_decompress1
Error in lapply(x, f) : 
  lazy-load database 'D:/RCompile/recent/R/library/tools/R/tools.rdb' is corrupt
Calls: <Anonymous> -> Filter -> unlist -> lapply
Execution halted
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [8s] OK
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate node stack


It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Changes
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'log2console'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) disaggregate.Rd:56: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'tsibble-vctrs':
  'vec_ptype2.tbl_ts' 'vec_cast.tbl_ts' 'vec_cast.yearmonth'
  'vec_ptype2.yearmonth' 'vec_cast.yearquarter'
  'vec_ptype2.yearquarter' 'vec_cast.yearweek' 'vec_ptype2.yearweek'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
    libs   1.2Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Updates for the development version (0.1.0.9000) on Github
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object 'plot-Wave':
  'plot.Wave.channel'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) lindner.Rd:44: Escaped LaTeX specials: \_
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package which this enhances but not available for checking: 'sl3'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Problems with news in 'NEWS.md':
No news entries found.
installed size is  9.9Mb
  sub-directories of 1Mb or more:
    doc     7.1Mb
    ubinc   2.0Mb
Specified C++14: please drop specification unless essential
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    doc    1.0Mb
    libs   4.0Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc        1.4Mb
    shinyapp   3.4Mb
Specified C++11: please drop specification unless essential
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc         1.4Mb
    dummydata   1.4Mb
    libs        2.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    uktrans_get is fixed when start_date is used (#2)
    Extra layer of of NULL returns to fail gracefully with an informative message.
    Removed travis & appveyor and using gh_actions instead.
    Using gh-pages to create the pkgdown website.
    Create an app as vignette page to search with the help of uklr.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    help   4.3Mb
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 17.5Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    libs  14.6Mb
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    doc   7.6Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'USA.state.boundaries.data'
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   6.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpcbgBgj\file22b00617a244a'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpcbgBgj\file22b00617a244a'
checkRd: (-1) aosat.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) aosat.Rd:21: Escaped LaTeX specials: \_
checkRd: (-1) arctic.oscillations.Rd:19: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) arctic.oscillations.Rd:20: Escaped LaTeX specials: \_
checkRd: (-1) babies.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) babies.Rd:41: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:43: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) exec.pay.Rd:5: Escaped LaTeX specials: \$
checkRd: (-1) sp500.excess.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) sp500.excess.Rd:6: Escaped LaTeX specials: \&
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    extdata   6.6Mb
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Specified C++11: please drop specification unless essential
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/utr.annotation.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
installed size is 17.2Mb
  sub-directories of 1Mb or more:
    doc    1.7Mb
    libs  15.3Mb
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'vaers', 'vaersND'
Packages suggested but not available for checking: 'vaers', 'vaersND'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    extdata   8.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/vapour.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) randomVarImpsRFplot.Rd:97: Escaped LaTeX specials: \&
checkRd: (-1) varSelImpSpecRF.Rd:83: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/vegclust.Rcheck/00install.out' for details.
S3 methods shown with full name in documentation object 'syntab':
  'print.syntab'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/velociraptr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) value.Rd:32: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ex121.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex124.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex125.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex127.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex32.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex33.Rd:18: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) checkTS.VGAMextra.Rd:176: Escaped LaTeX specials: \&
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    R      4.1Mb
    help   2.9Mb
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Running 'testthat.R' [13m]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(villager)
  > 
  > test_check("villager")
Fatal error: couldn't allocate node stack
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc    2.7Mb
    libs   1.0Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc    1.4Mb
    libs   5.2Mb
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    NEW FEATURES
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    help          1.3Mb
    htmlwidgets   5.0Mb
Problems with news in 'NEWS.md':
No news entries found.
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
installed size is 10.7Mb
  sub-directories of 1Mb or more:
    doc           2.0Mb
    htmlwidgets   6.8Mb
'LazyData' is specified without a 'data' directory
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc   5.5Mb
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   5.7Mb
'LazyData' is specified without a 'data' directory
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc       5.4Mb
    extdata   1.1Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    vortexRdata pre-1.0.3
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) compute.means.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) norm.wattfabricius.Rd:5: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    extdata   8.5Mb
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Specified C++14: please drop specification unless essential
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    libs   4.2Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    R     1.2Mb
    doc   5.5Mb
Error(s) in re-building vignettes:
--- re-building 'Intro_to_warbleR.Rmd' using rmarkdown
--- finished re-building 'Intro_to_warbleR.Rmd'

--- re-building 'warbleR_workflow_01.Rmd' using rmarkdown
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  unable to allocate bitmap
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  opening device failed
Quitting from lines 179-193 (warbleR_workflow_01.Rmd) 
Error: processing vignette 'warbleR_workflow_01.Rmd' failed with diagnostics:
unable to start png() device
--- failed re-building 'warbleR_workflow_01.Rmd'

--- re-building 'warbleR_workflow_02.Rmd' using rmarkdown
--- finished re-building 'warbleR_workflow_02.Rmd'

--- re-building 'warbleR_workflow_03.Rmd' using rmarkdown
--- finished re-building 'warbleR_workflow_03.Rmd'

SUMMARY: processing the following file failed:
  'warbleR_workflow_01.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'wavemulcor-vignette.Rmd' using rmarkdown
Warning in dev.off(dv) : processing of the plot ran out of memory
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  unable to allocate bitmap
Warning in (function (filename = "Rplot%03d.png", width = 480, height = 480,  :
  opening device failed
Quitting from lines 277-294 (wavemulcor-vignette.Rmd) 
Error: processing vignette 'wavemulcor-vignette.Rmd' failed with diagnostics:
unable to start png() device
--- failed re-building 'wavemulcor-vignette.Rmd'

SUMMARY: processing the following file failed:
  'wavemulcor-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:
--- re-building 'waves.Rmd' using rmarkdown
Quitting from lines 273-285 (waves.Rmd) 
Error: processing vignette 'waves.Rmd' failed with diagnostics:
cannot allocate vector of size 17.6 Mb
--- failed re-building 'waves.Rmd'

SUMMARY: processing the following file failed:
  'waves.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpUrrlvo\file2450852576fc'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpUrrlvo\file2450852576fc'
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpUrrlvo\file2450852576fc'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'examples.Rmd' using rmarkdown
Quitting from lines 542-565 (examples.Rmd) 
Error: processing vignette 'examples.Rmd' failed with diagnostics:
cannot allocate vector of size 79 Kb
--- failed re-building 'examples.Rmd'

SUMMARY: processing the following file failed:
  'examples.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
'LazyData' is specified without a 'data' directory
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/wdman.Rcheck/00install.out' for details.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: 'prepr'
Problems with news in 'NEWS.md':
No news entries found.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpMfvXGV\file49c81c2f524f'
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
CreateThread failed
installed size is 10.2Mb
  sub-directories of 1Mb or more:
    client   9.1Mb
    doc      1.0Mb
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/httpuv/libs/x64/httpuv.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Calls: suppressMessages ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
Running 'testthat.R' [38s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(webmorphR)
  
  ************
  Welcome to webmorphR. For support and examples visit:
  https://debruine.github.io/webmorphR/
  ************
  
  
  Attaching package: 'webmorphR'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  > 
  > test_check("webmorphR")
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp4OWsYT\file1f0587b3725e7'
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpY1XmGD\file15bcc26091410'
Error: package or namespace load failed for 'webSDM' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/terra/libs/x64/terra.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), doma
Execution halted
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Error: package or namespace load failed for 'webSDM' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/rlang/libs/x64/rlang.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), doma
Execution halted
Fatal error: couldn't allocate node stack

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\Rtmp4sFhuW\fileeed83456722'
Specified C++11: please drop specification unless essential
Fatal error: couldn't allocate memory for pointer stack
Warning in get(f, envir = code_env) :
  internal error -4 in R_decompress1
Error in get(f, envir = code_env) : 
  lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/weibulltools/R/weibulltools.rdb' is corrupt
Calls: <Anonymous> -> Filter -> unlist -> lapply -> FUN -> get
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Specified C++11: please drop specification unless essential
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpEn2emK\file2297c2e1163'
Missing or unexported object: 'MNP::predict.mnp'
Missing link or links in documentation object 'sbps.Rd':
  '[cobalt:balance.summary]{col_w_smd()}'
  '[cobalt:balance.summary]{col_w_corr()}'

Missing link or links in documentation object 'stop.method.Rd':
  '[cobalt:balance.summary]{col_w_smd()}'
  '[cobalt:balance.summary]{col_w_ks()}'
  '[cobalt:balance.summary]{col_w_cov()}'
  '[cobalt:balance.summary]{balance summary}'

See section 'Cross-references' in the 'Writing R Extensions' manual.
Encountered the following conversion/validation errors:
CreateThread failed
Fatal error: couldn't allocate node stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [14s] OK
During startup - Warning message:
  package 'stats' in options("defaultPackages") was not found 
  Error in readRDS(nsInfoFilePath) : error reading from connection
  Calls: getNamespace -> loadNamespace -> readRDS
  Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpgrazTo\file1776c67c36c21'
Mingw-w64 runtime failure:
    VirtualProtect failed with code 0x5af
Running examples in 'welo-Ex.R' failed
The error occurred in:
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpyemBGF\file2940860704ba4'
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation

Found the following possibly unsafe calls:
Fatal error: couldn't allocate node stack
Incorrect (un)loading of package shared object.
Fatal error: couldn't allocate node stack

The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [11s] OK
'LazyData' is specified without a 'data' directory
Error in readRDS(ffile) : error reading from connection
Calls: getNamespace -> loadNamespace -> readRDS
Execution halted
Running massageExamples to create 'wfg-Ex.R' failed
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Error: lazy-load database 'D:/RCompile/recent/R/library/base/R/base.rdb' is corrupt
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
       attr(package, "LibPath") <- which.lib.loc
       ns <- loadNamespace(package, lib.loc)
       env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
   }, error = function(e) {
       P <- if (!is.null(cc <- conditionCall(e))) 
           paste(" in", deparse(cc)[1L])
       else ""
       msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
           sQuote(package), P, conditionMessage(e))
       if (logical.return && !quietly) 
           message(paste("Error:", msg), domain = NA)
       else stop(msg, call. = FALSE, domain = NA)
   })
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
Fatal error: couldn't allocate node stack
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
8: inDL(x, as.logical(local), as.logical(now), ...)
7: dyn.load(file, DLLpath = DLLpath, ...)
6: library.dynam(lib, package, package.lib)
5: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Running massageExamples to create 'wgaim-Ex.R' failed
Fatal error: couldn't allocate node stack

 NONE
Error(s) in re-building vignettes:
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Error: package or namespace load failed for 'wgeesel':
 cannot allocate vector of size 343 Kb
Execution halted

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Warning in Rd2ex(db[[f]], file.path(filedir, paste0(nm, ".R")), defines = NULL,  :
  internal error -4 in R_decompress1
Error in Rd2ex(db[[f]], file.path(filedir, paste0(nm, ".R")), defines = NULL,  : 
  lazy-load database 'D:/RCompile/recent/R/library/tools/R/tools.rdb' is corrupt
Execution halted
Encountered the following conversion/validation errors:
'CreateProcess' failed to run 'd:\rtools43\x86_64-w64-mingw32.static.posix\bin\tidy.exe -language en -qe --drop-empty-elements no D:\temp\RtmpK0UiVU\file140a435694b0b'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Major changes
    Minor changes
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Error in get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable) : 
  object '#HAS_DUPLICATE_CLASS_NAMES' not found
Calls: suppressMessages ... .newOrMultipleMethod -> .duplicateClassesExist -> get
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Loading this package had a fatal error status code 5
Loading log:
Fatal error: couldn't allocate node stack
Fatal error: couldn't allocate node stack
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Fatal error: couldn't allocate node stack
During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
Warning in FUN(X[[i]], ...) : internal error -4 in R_decompress1
Error in FUN(X[[i]], ...) : 
  lazy-load database 'D:/RCompile/CRANpkg/lib/4.3/whitening/R/whitening.rdb' is corrupt
Calls: <Anonymous> -> funs_in_env -> Filter -> unlist -> lapply -> FUN
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found 
2: In .getClassesFromCache(Class) :
  restarting interrupted promise evaluation
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running examples in 'whitening-Ex.R' failed
The error most likely occurred in:

> ### Name: whiten
> ### Title: Whiten Data Matrix
> ### Aliases: whiten
> ### Keywords: multivariate
> 
> ### ** Examples
> 
> # load whitening library
> library("whitening")
> 
> ######
> 
> # example data set
> # E. Anderson. 1935.  The irises of the Gaspe Peninsula.
> # Bull. Am. Iris Soc. 59: 2--5
> data("iris")
> X = as.matrix(iris[,1:4])
Warning in as.matrix(iris[, 1:4]) : internal error 5 in R_decompress3
Error in as.matrix(iris[, 1:4]) : 
  lazy-load database 'D:\RCompile\recent\R\library\datasets/data/Rdata.rdb' is corrupt
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate node stack
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for 'whoa' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Execution halted
Error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.3/vctrs/libs/x64/vctrs.dll':
  LoadLibrary failure:  Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.

Call sequence:
8: inDL(x, as.logical(local), as.logical(now), ...)
7: dyn.load(file, DLLpath = DLLpath, ...)
6: library.dynam(lib, package, package.lib)
5: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
4: namespaceImport(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), 
       versionCheck = vI[[j]]), from = package, except = i$except)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), 
       versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'Using_sampler.Rmd' using rmarkdown
--- finished re-building 'Using_sampler.Rmd'

--- re-building 'Using_ssize.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'Using_ssize.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'Using_ssize.Rmd'

SUMMARY: processing the following file failed:
  'Using_ssize.Rmd'

Error: Vignette re-building failed.
Execution halted
Loading this package had a fatal error status code 301
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Fatal error: couldn't allocate node stack
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
During startup - Warning message:
package 'grDevices' in options("defaultPackages") was not found 
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Fatal error: couldn't allocate memory for pointer stack
Fatal error: couldn't allocate node stack
Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  : 
  invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$', reason 'Out of memory'
Calls: <Anonymous> -> grep
In addition: Warning message:
In grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz][ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789._-]+$",  :
  TRE pattern compilation error 'Out of memory'
Execution halted
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
Loading this package had a fatal error status code 301
Loading this package had a fatal error status code 301
'LazyData' is specified without a 'data' directory
Fatal error: couldn't allocate node stack
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate memory for pointer stack
Loading this package had a fatal error status code 301
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/wingui.Rcheck/00install.out' for details.
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    bn   7.1Mb
Fatal error: couldn't allocate memory for pointer stack
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: couldn't allocate memory for pointer stack

See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Found the following files with non-ASCII characters:
  Error in grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  : 
    invalid regular expression '^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]', reason 'Out of memory'
  Calls: <Anonymous> -> list_files_with_type -> grep
  In addition: Warning message:
  In grep("^[ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789]",  :
    TRE pattern compilation error 'Out of memory'
  Execution halted
Portable packages must use only ASCII characters in their R code,
except perhaps in comments.
Use \uxxxx escapes for other characters.
Loading this package had a fatal error status code 301
Problems with news in 'NEWS.md':
No news entries found.
Error: cannot allocate vector of size 25 Kb
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Error: cannot allocate vector of size 202 Kb
Execution halted
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Specified C++11: please drop specification unless essential
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error in readRDS(ffile) : error reading from connection
Calls: loadNamespace -> readRDS
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Mingw-w64 runtime failure:
  VirtualProtect failed with code 0x5af
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Running examples in 'woe-Ex.R' failed
The error occurred in:
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Problems with news in 'NEWS.md':
No news entries found.
Error: package or namespace load failed for 'woodValuationDE' in loadNamespace(package, lib.loc):
 there is no package called 'woodValuationDE'
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Specified C++11: please drop specification unless essential
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Loading this package had a fatal error status code 301
Error in readRDS(nsInfoFilePath) : error reading from connection
Calls: getNamespace -> loadNamespace -> readRDS
Execution halted
 ERROR
Fatal error: couldn't allocate memory for pointer stack
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    data   6.5Mb
Malformed Description field: should contain one or more complete sentences.
installed size is 12.7Mb
  sub-directories of 1Mb or more:
    data  12.6Mb
Malformed Description field: should contain one or more complete sentences.
installed size is 11.2Mb
  sub-directories of 1Mb or more:
    data  11.1Mb
installed size is 11.4Mb
  sub-directories of 1Mb or more:
    data  11.3Mb
installed size is 11.2Mb
  sub-directories of 1Mb or more:
    data  11.1Mb
Malformed Title field: should not end in a period.
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    doc       3.3Mb
    extdata   2.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   4.6Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 27.0Mb
  sub-directories of 1Mb or more:
    java  24.5Mb
Problems with news in 'NEWS.md':
No news entries found.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.3/xLLiM.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    java  10.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    exampleData   1.3Mb
    libs          2.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) read.npc.vpc.results.Rd:16: Escaped LaTeX specials: \_
checkRd: (-1) read.npc.vpc.results.Rd:19: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_
checkRd: (-1) read.npc.vpc.results.Rd:22: Escaped LaTeX specials: \_
Running 'testthat.R' [58s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(xpose)
  Loading required package: ggplot2
  
  Attaching package: 'xpose'
  
  The following object is masked from 'package:stats':
  
      filter
  
  > 
  > test_check("xpose")
  [ FAIL 1 | WARN 0 | SKIP 7 | PASS 520 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (7)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-xpose_save.R:27:3'): errors are returned for bad filename input ──
  `xpose_save(plot = plot, file = paths_1[3])` threw an error with unexpected message.
  Expected match: "Unknown graphics device"
  Actual message: "`filename` has no file extension and `device` is \"NULL\"."
  Backtrace:
       ▆
    1. ├─testthat::expect_error(...) at test-xpose_save.R:27:2
    2. │ └─testthat:::quasi_capture(...)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. └─xpose::xpose_save(plot = plot, file = paths_1[3])
    7.   └─ggplot2::ggsave(...)
    8.     └─ggplot2:::plot_dev(device, filename, dpi = dpi)
    9.       └─cli::cli_abort(...)
   10.         └─rlang::abort(...)
  
  [ FAIL 1 | WARN 0 | SKIP 7 | PASS 520 ]
  Error: Test failures
  Execution halted
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    include   4.0Mb
    libs      1.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'zdat'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    NEW DEPENDENCIES
checkRd: (-1) ZIClass.Rd:87: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:72: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:74: Escaped LaTeX specials: \_
checkRd: (-1) zid.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:63: Escaped LaTeX specials: \_
Package suggested but not available for checking: 'SDMTools'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘acceldata2.RData’
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Packages suggested but not available for checking:
  'RGtk2', 'gWidgets2RGtk2'
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: ‘cplm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Example.jpeg’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Unknown packages ‘HI’, ‘MHadaptive’ in Rd xrefs
checkRd: (-1) ada.Rd:171: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘table_AeRobiology’
Problems with news in ‘NEWS.md’:
No news entries found.
Error(s) in re-building vignettes:
  ...
--- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown
Quitting from lines 326-331 (afex_analysing_accuracy_data.Rmd) 
Error: processing vignette ‘afex_analysing_accuracy_data.Rmd’ failed with diagnostics:
Problem while computing position.
ℹ Error occurred in the 1st layer.
Caused by error in `ggplot2::remove_missing()`:
! `na.rm` must be `TRUE` or `FALSE`, not an empty logical vector.
--- failed re-building ‘afex_analysing_accuracy_data.Rmd’

--- re-building ‘afex_anova_example.Rmd’ using rmarkdown
--- finished re-building ‘afex_anova_example.Rmd’

--- re-building ‘afex_mixed_example.Rmd’ using rmarkdown
--- finished re-building ‘afex_mixed_example.Rmd’

--- re-building ‘afex_plot_introduction.Rmd’ using rmarkdown
--- finished re-building ‘afex_plot_introduction.Rmd’

--- re-building ‘afex_plot_supported_models.Rmd’ using rmarkdown
--- finished re-building ‘afex_plot_supported_models.Rmd’

--- re-building ‘assumptions_of_ANOVAs.Rmd’ using rmarkdown
--- finished re-building ‘assumptions_of_ANOVAs.Rmd’

--- re-building ‘introduction-mixed-models.pdf.asis’ using asis
--- finished re-building ‘introduction-mixed-models.pdf.asis’

SUMMARY: processing the following file failed:
  ‘afex_analysing_accuracy_data.Rmd’

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
Problems with news in ‘NEWS.md’:
No news entries found.
S3 methods shown with full name in documentation object ‘intervals.freq’:
  ‘intervals.freq’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Package which this enhances but not available for checking: ‘asreml’
'LazyData' is specified without a 'data' directory
checkRd: (-1) BerryMielke.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) BlairLacy.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) Kvalseth.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) consensus.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) dsquared.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) l.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) lsquared.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) lsquared.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) var.variance.Rd:12: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘RandomFields’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘Rmalschains’
Error(s) in re-building vignettes:
  ...
--- re-building ‘V01_get_started.Rmd’ using rmarkdown
--- finished re-building ‘V01_get_started.Rmd’

--- re-building ‘V02.1_param_optim.Rmd’ using rmarkdown
Quitting from lines 14-25 (V02.1_param_optim.Rmd) 
Error: processing vignette ‘V02.1_param_optim.Rmd’ failed with diagnostics:
there is no package called 'Rmalschains'
--- failed re-building ‘V02.1_param_optim.Rmd’

--- re-building ‘V02.2_param_mcmc.Rmd’ using rmarkdown
--- finished re-building ‘V02.2_param_mcmc.Rmd’

--- re-building ‘V03_param_sets_GR4J.Rmd’ using rmarkdown
--- finished re-building ‘V03_param_sets_GR4J.Rmd’

--- re-building ‘V04_cemaneige_hysteresis.Rmd’ using rmarkdown
--- finished re-building ‘V04_cemaneige_hysteresis.Rmd’

--- re-building ‘V05_sd_model.Rmd’ using rmarkdown
--- finished re-building ‘V05_sd_model.Rmd’

SUMMARY: processing the following file failed:
  ‘V02.1_param_optim.Rmd’

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘stuve.pdf’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) ALF.Rd:47: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) optimalfrequency.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:31: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
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checkRd: (-1) UN1.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) rateprof.Rd:64: Escaped LaTeX specials: \&
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
‘library’ or ‘require’ call to ‘network’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
as.url:
  function(x, ...)
as.url.domain:
  function(x)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
checkRd: (-1) deshrink.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) deshrink.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) plot.mat.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) plot.wa.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) predict.prcurve.Rd:5: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘BH-0.05-ListOfGenes.txt’ ‘BH-0.05-VM-ListOfGenes.txt’
  ‘CompleteListOfGenes.txt’ ‘GenesOutOfAnalysis.txt’
  ‘GenesOutOfAnalysis_NotEnoughObs.txt’
  ‘GenesOutOfAnalysis_NullVar.txt’ ‘VM-CompleteListOfGenes.txt’
  ‘bonferroni-0.05-ListOfGenes.txt’
  ‘bonferroni-0.05-VM-ListOfGenes.txt’
checkRd: (-1) AncestryMapper2.0-package.Rd:33: Escaped LaTeX specials: \~
checkRd: (-1) AncestryMapper2.0-package.Rd:38: Escaped LaTeX specials: \~
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) PV_post_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_post_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package required but not available: ‘ChainLadder’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Found the following calls to attach():
File ‘apollo/R/apollo_attach.R’:
  attach(as.list(apollo_beta), warn.conflicts = FALSE)
  attach(database, warn.conflicts = FALSE)
  attach(draws, warn.conflicts = FALSE)
  attach(randcoeff, warn.conflicts = FALSE)
  attach(lcpars, warn.conflicts = FALSE)
See section ‘Good practice’ in ‘?attach’.
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following files/directories:
  ‘APBinary_PPV.csv’ ‘APBinary_TPF.csv’
  ‘APBinary_ap_summary(method=perturbation,B=1500).csv’
  ‘APBinary_auc_summary(method=perturbation,B=1500).csv’
  ‘APSurv_PPV.csv’ ‘APSurv_TPF.csv’
  ‘APSurv_ap_summary(method=bootstrap,B=500).csv’
  ‘APSurv_auc_summary(method=bootstrap,B=500).csv’
  ‘CompareAP_Binary_dap_summary(method=none).csv’
  ‘CompareAP_Survival_dap_summary(method=bootstrap,B=500).csv’
checkRd: (-1) AQuadtree-package.Rd:11: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Packages suggested but not available for checking:
  'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘ARTP’
Found the following significant warnings:
  ARTP2_init.c:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ARTP2.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
* used C++ compiler: ‘g++-11 (Debian 11.3.0-12) 11.3.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘asreml’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘asteRiskData’
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Unknown package ‘snpar’ in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  driver.c:114:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  driver.c:161:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  driver.c:199:17: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/audio.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
File ‘audio/libs/audio.so’:
  Found non-API call to R: ‘R_checkActivity’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Running examples in ‘autoReg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ggcmprsk
> ### Title: Draw Cumulative Incidence Curves for Competing Risks
> ### Aliases: ggcmprsk
> 
> ### ** Examples
> 
> data(melanoma,package="boot")
> melanoma$status1 = ifelse(melanoma$status==1,1,ifelse(melanoma$status==2,0,2))
> ggcmprsk(time/365+status1~1,data=melanoma)
Error in `mold_formula_default_process_outcomes()`:
! Interaction terms can't be specified on the LHS of `formula`.
ℹ The following interaction term was found: `time/365`.
Backtrace:
     ▆
  1. └─autoReg::ggcmprsk(time/365 + status1 ~ 1, data = melanoma)
  2.   ├─base::suppressWarnings(...)
  3.   │ └─base::withCallingHandlers(...)
  4.   ├─tidycmprsk::cuminc(as.formula(formula), data = data, ...)
  5.   └─tidycmprsk:::cuminc.formula(...)
  6.     ├─hardhat::mold(formula, data, blueprint = hardhat::default_formula_blueprint(intercept = TRUE))
  7.     └─hardhat:::mold.formula(formula, data, blueprint = hardhat::default_formula_blueprint(intercept = TRUE))
  8.       ├─hardhat::run_mold(blueprint, data = data)
  9.       └─hardhat:::run_mold.default_formula_blueprint(blueprint, data = data)
 10.         └─hardhat:::mold_formula_default_process(...)
 11.           └─hardhat:::mold_formula_default_process_outcomes(blueprint = blueprint, data = data)
 12.             └─hardhat:::check_no_interactions(formula)
 13.               └─hardhat:::expr_check_no_interactions(expr, error_call = error_call)
 14.                 └─hardhat:::expr_check_no_interactions(expr[[i]], error_call = error_call)
 15.                   └─hardhat:::expr_check_no_interactions(expr[[i]], error_call = error_call)
 16.                     └─cli::cli_abort(message, call = error_call)
 17.                       └─rlang::abort(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Automatic_Regression_Modeling.Rmd’ using rmarkdown
--- finished re-building ‘Automatic_Regression_Modeling.Rmd’

--- re-building ‘Bootstrap_Prediction.Rmd’ using rmarkdown
--- finished re-building ‘Bootstrap_Prediction.Rmd’

--- re-building ‘Getting_started.Rmd’ using rmarkdown
--- finished re-building ‘Getting_started.Rmd’

--- re-building ‘Statiastical_test_in_gaze.Rmd’ using rmarkdown
--- finished re-building ‘Statiastical_test_in_gaze.Rmd’

--- re-building ‘Survival.Rmd’ using rmarkdown
Quitting from lines 195-196 (Survival.Rmd) 
Error: processing vignette ‘Survival.Rmd’ failed with diagnostics:
Interaction terms can't be specified on the LHS of `formula`.
ℹ The following interaction term was found: `time/365`.
--- failed re-building ‘Survival.Rmd’

SUMMARY: processing the following file failed:
  ‘Survival.Rmd’

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘lixoftConnectors’
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘fdpbandsdata’
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) barcode.Rd:52: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Earlier versions
Specified C++11: please drop specification unless essential
Package which this enhances but not available for checking: ‘rPython’
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) BayesComm-package.Rd:33: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
checkRd: (-1) dilution.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:17: Escaped LaTeX specials: \$
Found the following significant warnings:
  bayesDccGarch.c:48:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  bayesDccGarch.c:110:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  bayesDccGarch.c:172:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/bayesDccGarch.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
plot:
  function(x)
plot.posterior:
  function(x, add_prior, ...)

plot:
  function(x)
plot.posterior:
  function(x, add_prior, ...)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) pulse_of_the_nation.Rd:10: Escaped LaTeX specials: \$
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
checkRd: (-1) bart.Rd:271: Escaped LaTeX specials: \_
Package suggested but not available for checking: ‘gpclib’
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
checkRd: (-1) create_ThetaMatrix.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) create_ThetaMatrix.Rd:41: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_50_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_50_biascor_1.RData’
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘fabiabreast.txt’
Package suggested but not available for checking: ‘INLA’
checkRd: (-1) tlsce.Rd:51: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:55: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:90: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:93: Escaped LaTeX specials: \_
S3 methods shown with full name in documentation object ‘export.bce’:
  ‘export.bce’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) Glendalough.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Sluggan.Rd:19: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘dump.txt’
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘beast_plot_toy.pdf’
GNU make is a SystemRequirements.
Found the following files/directories:
  ‘alist.txt’ ‘rpkg’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  load.c:11:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nanotime.h:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nanotime.h:7:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mark.c:75:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mark.c:118:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mark.c:119:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nanotime.c:61:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nanotime.c:71:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  process_memory.c:79:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/bench.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
Package suggested but not available for checking: ‘SoDA’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) bgmm-package.Rd:23: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
checkRd: (-1) dotPlot.Rd:56: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) Jeffreysbs.Rd:17: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  rbimax.c:326:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/biclust.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘ffbase’
Package suggested but not available for checking: ‘INLA’
Found the following significant warnings:
  lib.h:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lib.c:3:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/bigGP.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
Specified C++11: please drop specification unless essential
Found the following calls to data() loading into the global environment:
File ‘biglm/R/bigglm.R’:
  data(reset = TRUE)
  data(reset = FALSE)
See section ‘Good practice’ in ‘?data’.
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘rrelaxiv’
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘outputs’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) BinaryEPPM.Rd:159: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘ccf_ccf_ID31_ID32_res.jpg’ ‘ccf_ccf_ID31_ID32_res.pdf’
  ‘output_ENSO_NHSST.tmp’ ‘plot_plot_ts_RAW_BIN_enso_sst.pdf’
  ‘plot_plot_ts_RAW_BIN_enso_sst01.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst02.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst03.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst04.png’ ‘plot_ts_ACER_ABRUPT.pdf’
  ‘plot_ts_ACER_ABRUPT01.png’ ‘plot_ts_ACER_ABRUPT02.png’
  ‘plot_ts_ACER_ABRUPT03.png’ ‘plot_ts_ACER_ABRUPT04.png’
  ‘salida_ACER_ABRUPT.tmp’ ‘scaterplot_scatterplot_ENSO_SST.jpg’
  ‘scaterplot_scatterplot_ENSO_SST.pdf’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
S3 methods shown with full name in documentation object ‘select.cfs’:
  ‘select.cfs’

S3 methods shown with full name in documentation object ‘select.fast.filter’:
  ‘select.fast.filter’

S3 methods shown with full name in documentation object ‘select.forward.Corr’:
  ‘select.forward.Corr’

S3 methods shown with full name in documentation object ‘select.forward.wrapper’:
  ‘select.forward.wrapper’

S3 methods shown with full name in documentation object ‘select.inf.chi2’:
  ‘select.inf.chi2’

S3 methods shown with full name in documentation object ‘select.inf.gain’:
  ‘select.inf.gain’

S3 methods shown with full name in documentation object ‘select.inf.symm’:
  ‘select.inf.symm’

S3 methods shown with full name in documentation object ‘select.process’:
  ‘select.process’

S3 methods shown with full name in documentation object ‘select.relief’:
  ‘select.relief’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Found the following files/directories:
  ‘pointshape.dbf’ ‘pointshape.shp’ ‘pointshape.shx’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘asreml’
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) tocher.Rd:13: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Found the following significant warnings:
  binarizeBASCA.h:37:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  TASC.c:258:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  TASC_min.c:256:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  binarizeBASCA.c:358:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/BiTrinA.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cmdstanr’
S3 methods shown with full name in documentation object ‘blavFitIndices’:
  ‘summary.bfi’

S3 methods shown with full name in documentation object ‘ppmc’:
  ‘summary.ppmc’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
GNU make is a SystemRequirements.
checkRd: (-1) posteriorFeasibility.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) sp500Returns.Rd:4: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  include/register.h:46:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  include/register.h:75:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  include/register.h:76:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  include/register.h:82:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  globals.c:15:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  globals.c:33:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  test.counter.c:26:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  test.counter.c:35:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/bnlearn.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Packages suggested but not available for checking: 'cplexAPI', 'bestsubset'
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    modules 0.x
'LazyData' is specified without a 'data' directory
checkRd: (-1) bpca.Rd:85: Escaped LaTeX specials: \&
S3 methods shown with full name in documentation object ‘xtable.bpca’:
  ‘xtable.bpca’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) bp_rats.Rd:41: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
checkRd: (-1) R2txtJG.Rd:90: Escaped LaTeX specials: \#
Packages suggested but not available for checking: 'RGtk2', 'cairoDevice'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
S3 methods shown with full name in documentation object ‘subset.int’:
  ‘subset.int’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘cmdstanr’
Package suggested but not available for checking: ‘glmmADMB’
Packages suggested but not available for checking: 'btergm', 'speedglm'
Unknown packages ‘speedglm’, ‘btergm’ in Rd xrefs
checkRd: (-1) brr-package.Rd:33: Escaped LaTeX specials: \&
Found the following significant warnings:
  BugsHelper.c:76:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BugsHelper.c:87:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BugsHelper.c:88:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/BRugs.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/Makefile.win
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘gvcm.cat’
Specified C++11: please drop specification unless essential
Unknown package ‘gvcm.cat’ in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) kink_estimator.Rd:60: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) deleteZeroComponents.Rd:70: Escaped LaTeX specials: \& \&
Found the following significant warnings:
  cairobem.c:50:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Rapi.h:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Rapi.h:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cairotalk.c:661:23: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cairotalk.c:1552:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cairotalk.c:1588:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  xlib-backend.c:156:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/Cairo.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘ReGenesees’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘tmp.txt’
Found the following files/directories:
  ‘MDA231_tree.pdf’
checkRd: (-1) caic-class.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) caic-class.Rd:15: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    captr .1.4
    captr .1.3
    captr .1.2
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) States.Rd:48: Escaped LaTeX specials: \$
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘GAMBoost’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘catmapdata.fixed.effects.plot.pdf’ ‘catmapdata.funnel.plot.pdf’
  ‘catmapdata.output.txt’ ‘catmapdata.random.effects.plot.pdf’
checkRd: (-1) belt.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) bipf.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) crime.Rd:17: Escaped LaTeX specials: \&
checkRd: (-1) da.cat.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) dabipf.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) ecm.cat.Rd:77: Escaped LaTeX specials: \&
checkRd: (-1) em.cat.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) ipf.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) logpost.cat.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) mda.cat.Rd:67: Escaped LaTeX specials: \&
checkRd: (-1) mi.inference.Rd:140: Escaped LaTeX specials: \&
checkRd: (-1) older.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) prelim.cat.Rd:67: Escaped LaTeX specials: \&
Specified C++14: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) tpcExample.Rd:30: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Specified C++14: please drop specification unless essential
GNU make is a SystemRequirements.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘hotcold.csv’
Problems with news in ‘NEWS.md’:
No news entries found.
Specified C++11: please drop specification unless essential
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘CirceR’
Found the following files/directories:
  ‘out.png’ ‘out1.txt’ ‘out2.txt’
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘figure01ceg.pdf’ ‘figure02ceg.pdf’ ‘staged.tree.graph.pdf’
  ‘stratified-event-tree-plot.pdf’
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Unexported objects imported by ‘:::’ calls:
  ‘copula:::dCdu’ ‘copula:::fitCopStart’
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘gravity’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘alr3’
Problems with news in ‘NEWS.md’:
No news entries found.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Major refactoring of the code
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
S3 methods shown with full name in documentation object ‘select.cglasso’:
  ‘select.cglasso’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: ‘cplm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
S3 methods shown with full name in documentation object ‘internals’:
  ‘max.rss’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘darts’
'LazyData' is specified without a 'data' directory
checkRd: (-1) hyptis.Rd:31: Escaped LaTeX specials: \&
Found the following files/directories:
  ‘stepres00.txt’
Package suggested but not available for checking: ‘clusterCrit’
Unknown package ‘clusterCrit’ in Rd xrefs
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘countreg’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cmdstanr’
Package unavailable to check Rd xrefs: ‘cmdstanr’
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘entab’
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘userfriendlyscience’
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    clhs_0.7-2
    clhs_0.7-0
    clhs_0.6-0
    clhs_0.5-7
    clhs_0.5-6
    clhs_0.5-3
    clhs_0.5-2
    clhs_0.5-1
    clhs_0.5-0
    clhs_0.4-3
    clhs_0.4-2
    clhs_0.4-1
    clhs_0.4-0
    clhs_0.3-2
    clhs_0.3-1
    clhs_0.3-0
    clhs_0.2-1
    clhs_0.2-0
    clhs_0.1-0
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) diagwl.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) diagwl.Rd:5: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) clme.Rd:84: Escaped LaTeX specials: \&
Package required but not available: ‘ChainLadder’

Package suggested but not available for checking: ‘apc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) genRandomClust.Rd:228: Escaped LaTeX specials: \_
checkRd: (-1) genRandomClust.Rd:259: Escaped LaTeX specials: \_
checkRd: (-1) genRandomClust.Rd:327: Escaped LaTeX specials: \_
checkRd: (-1) plot1DProjection.Rd:95: Escaped LaTeX specials: \_ \_
checkRd: (-1) plot2DProjection.Rd:117: Escaped LaTeX specials: \_ \_
checkRd: (-1) simClustDesign.Rd:235: Escaped LaTeX specials: \_
checkRd: (-1) simClustDesign.Rd:268: Escaped LaTeX specials: \_
checkRd: (-1) simClustDesign.Rd:331: Escaped LaTeX specials: \_
Found the following files/directories:
  ‘clusterhap_reports’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
checkRd: (-1) dtmvnom.Rd:30: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  optimal_assignment.c:47:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/clv.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot.predict.crrQR.Rd:18: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crrQR.Rd:22: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crr.Rd:18: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crr.Rd:22: Escaped LaTeX specials: \#
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘tobit1’
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘PopGenome’
'LazyData' is specified without a 'data' directory
checkRd: (-1) drqssbc.Rd:83: Escaped LaTeX specials: \&
checkRd: (-1) qbsks.Rd:81: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘rkward’
Package which this enhances but not available for checking: ‘rkward’
Package suggested but not available for checking: ‘userfriendlyscience’
Found the following files/directories:
  ‘foo.R’ ‘foo.html’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Unexported object imported by a ‘:::’ call: ‘crayon:::mypaste’
  See the note in ?`:::` about the use of this operator.
Problems with news in ‘NEWS.md’:
No news entries found.
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘cometExactTest_plot.pdf’
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘CAM’
S3 methods shown with full name in documentation object ‘compareGroups-internal’:
  ‘formula.compareGroups’ ‘update.formula2’ ‘summary.snp2’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) babies.Rd:35: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘design_names.csv’ ‘design_numbers.csv’
  ‘encoded_orthogonal_factorial_design.csv’
  ‘orthogonal_factorial_design.csv’
Specified C++11: please drop specification unless essential
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'conosPanel', 'p2data'
Specified C++11: please drop specification unless essential
GNU make is a SystemRequirements.
Found the following significant warnings:
  brentmin.c:237:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ContaminatedMixt.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’