Running ‘testthat.R’ [322s/289s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(CRE)
  > 
  > test_check("CRE")
  2023-04-08 15:26:28.319597 gimli2 3633866 CRE cre INFO:  Starting rules discovery...
  2023-04-08 15:26:28.357623 gimli2 3633866 CRE cre INFO:  Starting rules discovery...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-08 15:27:03.688679 gimli2 3633866 CRE cre INFO:  Done with rules discovery. (WC: 35.327 seconds.)
  2023-04-08 15:27:03.730568 gimli2 3633866 CRE cre INFO:  Starting inference...
  2023-04-08 15:27:04.225392 gimli2 3633866 CRE cre INFO:  Starting rules discovery...
  2023-04-08 15:27:37.410009 gimli2 3633866 CRE cre INFO:  Done with rules discovery. (WC: 33.181 seconds.)
  2023-04-08 15:27:37.413212 gimli2 3633866 CRE cre INFO:  Starting inference...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-08 15:27:46.246649 gimli2 3633866 CRE cre INFO:  Done with inference. (WC: 8.831 seconds .)
  2023-04-08 15:27:46.265646 gimli2 3633866 CRE cre INFO:  Done with running CRE function!(WC: 42.042 seconds.)
  2023-04-08 15:27:46.268265 gimli2 3633866 CRE cre INFO:  Done!
  2023-04-08 15:27:46.304057 gimli2 3633866 CRE cre INFO:  Starting rules discovery...
  2023-04-08 15:27:51.529052 gimli2 3633866 CRE cre INFO:  Done with rules discovery. (WC: 5.222 seconds.)
  2023-04-08 15:27:51.531799 gimli2 3633866 CRE cre INFO:  Starting inference...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  2023-04-08 15:27:58.563202 gimli2 3633866 CRE cre INFO:  Done with inference. (WC: 7.029 seconds .)
  2023-04-08 15:27:58.565759 gimli2 3633866 CRE cre INFO:  Done with running CRE function!(WC: 12.263 seconds.)
  2023-04-08 15:27:58.567985 gimli2 3633866 CRE cre INFO:  Done!
  2023-04-08 15:27:58.590321 gimli2 3633866 CRE cre INFO:  Starting rules discovery...
  2023-04-08 15:28:03.457132 gimli2 3633866 CRE cre INFO:  Done with rules discovery. (WC: 4.859 seconds.)
  2023-04-08 15:28:03.459813 gimli2 3633866 CRE cre INFO:  Starting inference...
  2023-04-08 15:28:07.994342 gimli2 3633866 CRE cre INFO:  Done with inference. (WC: 4.531 seconds .)
  2023-04-08 15:28:07.997398 gimli2 3633866 CRE cre INFO:  Done with running CRE function!(WC: 9.408 seconds.)
  2023-04-08 15:28:07.999835 gimli2 3633866 CRE cre INFO:  Done!
  2023-04-08 15:28:08.012296 gimli2 3633866 CRE cre INFO:  Starting rules discovery...
  2023-04-08 15:28:08.014956 gimli2 3633866 CRE cre INFO:  Using the provided ITE estimations...
  2023-04-08 15:28:08.460955 gimli2 3633866 CRE cre INFO:  Done with rules discovery. (WC: 0.446 seconds.)
  2023-04-08 15:28:08.464747 gimli2 3633866 CRE cre INFO:  Starting inference...
  2023-04-08 15:28:08.467455 gimli2 3633866 CRE cre INFO:  Skipped generating ITE.The provided ITE will be used.
  2023-04-08 15:28:08.486971 gimli2 3633866 CRE cre INFO:  Done with inference. (WC: 0.019 seconds .)
  2023-04-08 15:28:08.489713 gimli2 3633866 CRE cre INFO:  Done with running CRE function!(WC: 0.479 seconds.)
  2023-04-08 15:28:08.492224 gimli2 3633866 CRE cre INFO:  Done!
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  
   *** caught segfault ***
  address 0x7fd028d6a990, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  Error in setinfo.xgb.DMatrix(dmat, names(p), p[[1]]) : 
    The length of labels must equal to the number of rows in the input data
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Using 11 control variables.
  Using 10 potential effect moderators.
  
  Beginning MCMC:
  iteration: 0 sigma: 1
  iteration: 100 sigma: 0.939757
  iteration: 200 sigma: 0.790513
  iteration: 300 sigma: 0.861269
  iteration: 400 sigma: 0.801012
  iteration: 500 sigma: 0.835339
  iteration: 600 sigma: 0.782724
  iteration: 700 sigma: 0.841266
  iteration: 800 sigma: 0.809863
  iteration: 900 sigma: 0.866562
  time for loop: 5
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  Using 11 control variables.
  Using 10 potential effect moderators.
  
  Beginning MCMC:
  iteration: 0 sigma: 1
  iteration: 100 sigma: 0.833804
  iteration: 200 sigma: 0.818013
  iteration: 300 sigma: 0.773024
  iteration: 400 sigma: 0.817209
  iteration: 500 sigma: 0.827118
  iteration: 600 sigma: 0.795232
  iteration: 700 sigma: 0.798065
  iteration: 800 sigma: 0.920424
  iteration: 900 sigma: 0.808557
  time for loop: 10
  Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : 
    contrasts can be applied only to factors with 2 or more levels
  Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : 
    contrasts can be applied only to factors with 2 or more levels
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  fitting treatment model via method 'bart'
  fitting response model via method 'bart'
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 243 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-discover_rules.R:53:3'): discover_rules works as expected! ─────
  Error in `value[[3L]](cond)`: Combination of `cutoff` and `pfer` not allowed. 
  Try to decrease the `cutoff` or increase the `pfer`. 
  See Stability Selection documentation for further details. 
  
  Original Error message: Error in run_stabsel(fitter = fit_model, args.fitter = args.fitfun, n = n, : 'fitfun' must return a list with a named element called 'selected', and an optional second element called 'path'
  
  Backtrace:
      ▆
   1. └─CRE:::discover_rules(X, ite, method_params, hyper_params) at test-discover_rules.R:53:2
   2.   └─CRE:::select_rules(...)
   3.     └─base::tryCatch(...)
   4.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   5.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   6.           └─value[[3L]](cond)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 243 ]
  Error: Test failures
  Execution halted