Running 'testthat.R' [86s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(avidaR)
  > 
  > test_check("avidaR")
  Initiating curl with CURL_SSL_BACKEND: openssl
  [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]
  
  == Failed tests ================================================================
  -- Error ('test_get_db_summary.R:5:3'): get_db_summary -------------------------
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_db_summary.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_genome_id_from_genome_seq.R:5:3'): get_genome_id_from_genome_seq --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_genome_id_from_genome_seq.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_genome_id_from_logic_operation.R:5:3'): get_genome_id_from_logic_operation --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_genome_id_from_logic_operation.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_genome_id_from_phenotype_id.R:5:3'): get_genome_id_from_phenotype_id --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_genome_id_from_phenotype_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_genome_id_from_transcriptome_id.R:5:3'): get_genome_id_from_transcriptome_id --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_genome_id_from_transcriptome_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_genome_id_of_wild_type_organisms.R:5:3'): get_genome_id_of_wild_type_organisms --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_genome_id_of_wild_type_organisms.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_genome_seq_from_genome_id.R:5:3'): get_genome_seq_from_genome_id --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_genome_seq_from_genome_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_logic_operation_from_phenotype_id.R:5:3'): get_logic_operation_from_phenotype --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_logic_operation_from_phenotype_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_mutant_at_pos.R:5:3'): get_mutant_at_pos -------------------
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_mutant_at_pos.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_phenotype_id_from_genome_id.R:5:3'): get_phenotype_id_from_genome_id --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_phenotype_id_from_genome_seq.R:5:3'): get_phenotype_id_from_genome_seq --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_seq.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_phenotype_id_from_logic_operation.R:5:3'): get_phenotype_id_from_logic_operation --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_phenotype_id_from_logic_operation.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_phenotype_id_from_transcriptome_id.R:5:3'): get_phenotype_id_from_transcriptome_id --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_phenotype_id_from_transcriptome_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_tandem_id_from_genome_id.R:5:3'): get_tandem_id_from_genome_id --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_tandem_id_from_genome_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_tandem_id_from_genome_seq.R:5:3'): get_tandem_id_from_genome_seq --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_tandem_id_from_genome_seq.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_tandem_id_from_logic_operation.R:5:3'): get_tandem_id_from_logic_operation --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_tandem_id_from_logic_operation.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_tandem_id_from_phenotype_id.R:5:3'): get_tandem_id_from_phenotype --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_tandem_id_from_phenotype_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_tandem_seq_from_tandem_id.R:5:3'): get_tandem_seq_from_tandem_id --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_tandem_seq_from_tandem_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_transcriptome_id_from_genome_id.R:5:3'): get_transcriptome_id_from_genome_id --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_transcriptome_id_from_genome_seq.R:5:3'): get_transcriptome_id_from_genome_seq --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_seq.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_transcriptome_id_from_logic_operation.R:5:3'): get_transcriptome_id_from_logic_operation --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_transcriptome_id_from_logic_operation.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_transcriptome_id_from_phenotype_id.R:5:3'): get_transcriptome_id_from_phenotype --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_transcriptome_id_from_phenotype_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_get_transcriptome_seq_from_transcriptome_id.R:5:3'): get_transcriptome_seq_from_transcriptome_id --
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_get_transcriptome_seq_from_transcriptome_id.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_ontology.R:5:3'): ongology -------------------------------------
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_ontology.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_plot_transcriptome.R:5:3'): plot_transcriptome -----------------
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_plot_transcriptome.R:5:2
   2.   \-avidaR:::server_api_get(...)
  -- Error ('test_set_access_options.R:7:3'): set_access_options -----------------
  Error: Server responded with status code '523 - unknown':
  - Please, try in a few minutes.
  - If error persists, please contact server administrator.
  Backtrace:
      x
   1. \-triplestore$set_access_options(...) at test_set_access_options.R:7:2
   2.   \-avidaR:::server_api_get(...)
  
  [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]
  Error: Test failures
  Execution halted