Running ‘testthat.R’ [0m/11m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(queryup)
  > 
  > test_check("queryup")
  Query not supported
  Request failed : Error in handle_url(handle, url, ...) : 
    Must specify at least one of url or handle
  
  Request failed : Error in handle_url(handle, url, ...) : 
    Must specify at least one of url or handle
  
  Query not supported
  Request failed : Error in handle_url(handle, url, ...) : 
    Must specify at least one of url or handle
  
  Request failed : Error in handle_url(handle, url, ...) : 
    Must specify at least one of url or handle
  
  Query not supported
  Request failed : Error in handle_url(handle, url, ...) : 
    Must specify at least one of url or handle
  
  Request failed : Error in handle_url(handle, url, ...) : 
    Must specify at least one of url or handle
  
  Query not supported
  Request failed : Error in handle_url(handle, url, ...) : 
    Must specify at least one of url or handle
  
  Request failed : Error in handle_url(handle, url, ...) : 
    Must specify at least one of url or handle
  
  
  UniProt API request failed : 
  Client error: (404) Not Found
  
  UniProt API request failed : 
  Client error: (400) Bad Request
  'acc_id' is not a valid search field
  
  UniProt API request failed : 
  Client error: (400) Bad Request
  Invalid fields parameter value 'acc_id'
  300 invalid values were found (CON_A2ALU4, CON_A2ANU3, CON_A2AU37, CON_A2AUU0, CON_A2APF3, CON_D3YTS9, CON_A0A0G2JDV3, CON_A6H687, CON_E2JF22, CON_A6H630, ...) and removed from the query.
  Field 'accession_id' with no valid entries has been removed from query.
  600 invalid values were found (CON_A7TZE6, CON_A3FIN4, CON_A2A6M5, CON_A2AHL1, CON_A6X8Z5, CON_C0HKE9, CON_A1Y9I9, CON_A2AN08, CON_A2AF47, CON_A2AIW0, ...) and removed from the query.
  Field 'accession_id' with no valid entries has been removed from query.
  Field 'accession' with no valid entries has been removed from query.
  3 invalid values were found (P226, CON_P22682, REV_P47941) and removed from the query.
  
  UniProt API request failed : 
  Client error: (404) Not Found
  Querying the UniProt database...
  
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  Querying the UniProt database...
  
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    |=======================                                               |  33%Querying the UniProt database...
  
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  Querying the UniProt database...
  
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  Querying the UniProt database...
  
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  Querying the UniProt database...
  
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  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-query_uniprot.R:26:3'): Long queries with no columns defined work ──
  Error in `strsplit(res, split = "\n")`: non-character argument
  Backtrace:
      ▆
   1. └─queryup::query_uniprot(query, columns = NULL) at test-query_uniprot.R:26:2
   2.   └─queryup::get_uniprot_data(...)
   3.     └─base::strsplit(res, split = "\n")
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
  Error: Test failures
  Execution halted