Running ‘testthat.R’ [42s/127s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(seqgendiff)
  > 
  > test_check("seqgendiff")
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 53 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_genthin.R:22:3'): general thinning works ───────────────────────
  Error: objects 'rowSums', 'colSums', 'rowMeans', 'colMeans' are not exported by 'namespace:BiocGenerics'
  Backtrace:
      ▆
   1. ├─seqgendiff::thin_diff(...) at test_genthin.R:22:2
   2. │ └─seqgendiff:::est_sv(...)
   3. │   └─utils::capture.output(...)
   4. │     └─base::withVisible(...elt(i))
   5. └─base::loadNamespace(x)
   6.   ├─base::namespaceImport(...)
   7.   └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
   8.     └─base::namespaceImportFrom(...)
   9.       └─base::importIntoEnv(impenv, impnames, ns, impvars)
  ── Error ('test_genthin.R:76:5'): conversion to DESeq2DataSet and SummarizedExperiment works ──
  Error: objects 'rowSums', 'colSums', 'rowMeans', 'colMeans' are not exported by 'namespace:BiocGenerics'
  Backtrace:
      ▆
   1. ├─seqgendiff::thin_diff(...) at test_genthin.R:76:4
   2. │ └─seqgendiff:::est_sv(...)
   3. │   └─utils::capture.output(...)
   4. │     └─base::withVisible(...elt(i))
   5. └─base::loadNamespace(x)
   6.   ├─base::namespaceImport(...)
   7.   └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
   8.     └─base::namespaceImportFrom(...)
   9.       └─base::importIntoEnv(impenv, impnames, ns, impvars)
  ── Error ('test_group_assign.R:13:3'): length of corvec and nfac are 0 ─────────
  Error: objects 'rowSums', 'colSums', 'rowMeans', 'colMeans' are not exported by 'namespace:BiocGenerics'
  Backtrace:
       ▆
    1. ├─testthat::expect_message(...) at test_group_assign.R:13:2
    2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. ├─seqgendiff::corassign(mat = Y, corvec = c(0.2, 0.2, 0.2))
    7. └─base::loadNamespace(x)
    8.   ├─base::namespaceImport(...)
    9.   └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
   10.     ├─base::namespaceImport(...)
   11.     └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
   12.       └─base::namespaceImportFrom(...)
   13.         └─base::importIntoEnv(impenv, impnames, ns, impvars)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 53 ]
  Error: Test failures
  Execution halted