Running ‘testthat.R’ [41s/98s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(digitalDLSorteR)
  
  Attaching package: 'digitalDLSorteR'
  
  The following object is masked from 'package:base':
  
      saveRDS
  
  > 
  > test_check("digitalDLSorteR")
  [ FAIL 3 | WARN 0 | SKIP 2 | PASS 44 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • .checkPythonDependencies(alert = "none") is not TRUE (2)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_simBulk.R:29:1'): (code run outside of `test_that()`) ──────────
  Error: objects 'rowSums', 'colSums', 'rowMeans', 'colMeans' are not exported by 'namespace:BiocGenerics'
  Backtrace:
      ▆
   1. ├─digitalDLSorteR::estimateZinbwaveParams(...) at test_simBulk.R:29:0
   2. │ └─digitalDLSorteR:::.zinbWaveModel(...)
   3. │   └─base::do.call(zinbwave::zinbFit, args.list)
   4. └─base::loadNamespace(x)
   5.   ├─base::namespaceImportFrom(...)
   6.   │ └─base::asNamespace(ns)
   7.   └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   8.     └─base::namespaceImportFrom(...)
   9.       └─base::importIntoEnv(impenv, impnames, ns, impvars)
  ── Error ('test_simSingleCell.R:31:1'): (code run outside of `test_that()`) ────
  Error: objects 'rowSums', 'colSums', 'rowMeans', 'colMeans' are not exported by 'namespace:BiocGenerics'
  Backtrace:
      ▆
   1. ├─digitalDLSorteR::estimateZinbwaveParams(...) at test_simSingleCell.R:31:0
   2. │ └─digitalDLSorteR:::.zinbWaveModel(...)
   3. │   └─base::do.call(zinbwave::zinbFit, args.list)
   4. └─base::loadNamespace(x)
   5.   ├─base::namespaceImportFrom(...)
   6.   │ └─base::asNamespace(ns)
   7.   └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   8.     └─base::namespaceImportFrom(...)
   9.       └─base::importIntoEnv(impenv, impnames, ns, impvars)
  ── Error ('test_utils.R:25:1'): (code run outside of `test_that()`) ────────────
  Error: objects 'rowSums', 'colSums', 'rowMeans', 'colMeans' are not exported by 'namespace:BiocGenerics'
  Backtrace:
      ▆
   1. ├─digitalDLSorteR::estimateZinbwaveParams(...) at test_utils.R:25:0
   2. │ └─digitalDLSorteR:::.zinbWaveModel(...)
   3. │   └─base::do.call(zinbwave::zinbFit, args.list)
   4. └─base::loadNamespace(x)
   5.   ├─base::namespaceImportFrom(...)
   6.   │ └─base::asNamespace(ns)
   7.   └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   8.     └─base::namespaceImportFrom(...)
   9.       └─base::importIntoEnv(impenv, impnames, ns, impvars)
  
  [ FAIL 3 | WARN 0 | SKIP 2 | PASS 44 ]
  Error: Test failures
  Execution halted