Running ‘testthat.R’ [85s/268s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > 
  > suppressPackageStartupMessages(library(metacoder))
  > 
  > test_check("metacoder")
  [ FAIL 1 | WARN 1 | SKIP 3 | PASS 524 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (3)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test--taxmap.R:214:3'): Print methods works ─────────────────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: The `n_extra` argument of `print()` was deprecated in pillar 1.6.2 and
  is now defunct.
  ℹ Please use the `max_extra_cols` argument instead.
  Backtrace:
       ▆
    1. ├─testthat::expect_output(print(x), "<Taxmap>.+17 taxa.+17 edges.+1 functions.+reaction") at test--taxmap.R:214:2
    2. │ └─testthat:::quasi_capture(...)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─testthat::capture_output_lines(code, print, width = width)
    5. │   │   └─testthat:::eval_with_output(code, print = print, width = width)
    6. │   │     ├─withr::with_output_sink(path, withVisible(code))
    7. │   │     │ └─base::force(code)
    8. │   │     └─base::withVisible(code)
    9. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   10. ├─base::print(x)
   11. └─R6:::print.R6(x)
   12.   └─.subset2(x, "print")(...)
   13.     └─metacoder:::print_item(...)
   14.       └─get(best_method)(...)
   15.         ├─base::paste0(...)
   16.         ├─utils::capture.output(...)
   17.         │ └─base::withVisible(...elt(i))
   18.         ├─base::print(...)
   19.         └─pillar:::print.tbl(...)
   20.           └─pillar:::print_tbl(...)
   21.             └─lifecycle::deprecate_stop(...)
   22.               └─lifecycle:::deprecate_stop0(msg)
   23.                 └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 1 | SKIP 3 | PASS 524 ]
  Error: Test failures
  Execution halted