Error(s) in re-building vignettes:
--- re-building 'altbin-teratology.Rnw' using Sweave
--- finished re-building 'altbin-teratology.Rnw'

--- re-building 'binary-unemployment.Rnw' using Sweave
--- finished re-building 'binary-unemployment.Rnw'

--- re-building 'binary-vaso.Rnw' using Sweave
--- finished re-building 'binary-vaso.Rnw'

--- re-building 'count-children.Rnw' using Sweave
--- finished re-building 'count-children.Rnw'

--- re-building 'count-encephalitis.Rnw' using Sweave
--- finished re-building 'count-encephalitis.Rnw'

--- re-building 'count-insolvency.Rnw' using Sweave
--- finished re-building 'count-insolvency.Rnw'

--- re-building 'count-medcare.Rnw' using Sweave
--- finished re-building 'count-medcare.Rnw'

--- re-building 'loglinear-birth.Rnw' using Sweave
--- finished re-building 'loglinear-birth.Rnw'

--- re-building 'loglinear-leukoplakia.Rnw' using Sweave
--- finished re-building 'loglinear-leukoplakia.Rnw'

--- re-building 'modbin-dust.Rnw' using Sweave
--- finished re-building 'modbin-dust.Rnw'

--- re-building 'modbin-foodstamp.Rnw' using Sweave
--- finished re-building 'modbin-foodstamp.Rnw'

--- re-building 'modbin-unemployment1.Rnw' using Sweave
--- finished re-building 'modbin-unemployment1.Rnw'

--- re-building 'modbin-unemployment2.Rnw' using Sweave
--- finished re-building 'modbin-unemployment2.Rnw'

--- re-building 'multinomial-addiction1.Rnw' using Sweave
--- finished re-building 'multinomial-addiction1.Rnw'

--- re-building 'multinomial-addiction2.Rnw' using Sweave
--- finished re-building 'multinomial-addiction2.Rnw'

--- re-building 'multinomial-party1.Rnw' using Sweave
--- finished re-building 'multinomial-party1.Rnw'

--- re-building 'multinomial-party2.Rnw' using Sweave
--- finished re-building 'multinomial-party2.Rnw'

--- re-building 'multinomial-travel.Rnw' using Sweave
--- finished re-building 'multinomial-travel.Rnw'

--- re-building 'multivariate-birth1.Rnw' using Sweave
--- finished re-building 'multivariate-birth1.Rnw'

--- re-building 'multivariate-birth2.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "multivariate-birth2.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
--- finished re-building 'multivariate-birth2.Rnw'

Fatal error: couldn't allocate memory for pointer stack


During startup - Warning message:
package 'stats' in options("defaultPackages") was not found 
--- re-building 'ordinal-knee1.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "ordinal-knee1.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 301
--- finished re-building 'ordinal-knee1.Rnw'

--- re-building 'ordinal-knee2.Rnw' using Sweave
--- finished re-building 'ordinal-knee2.Rnw'

--- re-building 'ordinal-retinopathy1.Rnw' using Sweave
Loading required package: MASS
Loading required package: stats4
Loading required package: splines
--- finished re-building 'ordinal-retinopathy1.Rnw'

--- re-building 'ordinal-retinopathy2.Rnw' using Sweave
Loading required package: MASS
Loading required package: stats4
Loading required package: splines
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
Warning: 'logit' is deprecated.
Use 'logitlink' instead.
See help("Deprecated")
--- finished re-building 'ordinal-retinopathy2.Rnw'

--- re-building 'prediction-medcare.Rnw' using Sweave
--- finished re-building 'prediction-medcare.Rnw'

--- re-building 'random-aids.Rnw' using Sweave
--- finished re-building 'random-aids.Rnw'

--- re-building 'random-betablocker.Rnw' using Sweave
--- finished re-building 'random-betablocker.Rnw'

--- re-building 'random-knee1.Rnw' using Sweave
--- finished re-building 'random-knee1.Rnw'

--- re-building 'random-knee2.Rnw' using Sweave
--- finished re-building 'random-knee2.Rnw'

--- re-building 'random-knee3.Rnw' using Sweave
--- finished re-building 'random-knee3.Rnw'

--- re-building 'semiparametric-addiction.Rnw' using Sweave
--- finished re-building 'semiparametric-addiction.Rnw'

--- re-building 'semiparametric-children.Rnw' using Sweave
--- finished re-building 'semiparametric-children.Rnw'

--- re-building 'semiparametric-dust.Rnw' using Sweave
--- finished re-building 'semiparametric-dust.Rnw'

--- re-building 'semiparametric-unemployment.Rnw' using Sweave
--- finished re-building 'semiparametric-unemployment.Rnw'

--- re-building 'tree-dust.Rnw' using Sweave
--- finished re-building 'tree-dust.Rnw'

--- re-building 'tree-unemployment.Rnw' using Sweave
--- finished re-building 'tree-unemployment.Rnw'

SUMMARY: processing the following files failed:
  'multivariate-knee.Rnw' 'ordinal-arthritis.Rnw'

Error: Vignette re-building failed.
Execution halted