Running ‘testthat.R’ [99s/173s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(CausalGPS)
  > 
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  > test_check("CausalGPS")
  2023-02-16 01:01:30 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:01:34 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 196) ... 
  2023-02-16 01:01:35 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  21.2300763979248 in  0.5  radius.
  2023-02-16 01:01:35 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 196)
  2023-02-16 01:01:40 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 100) ... 
  2023-02-16 01:01:40 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  -8.74760785492387 in  0.5  radius.
  2023-02-16 01:01:40 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  -7.74760785492387 in  0.5  radius.
  2023-02-16 01:01:40 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  -6.74760785492387 in  0.5  radius.
  2023-02-16 01:01:40 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  -5.74760785492387 in  0.5  radius.
  2023-02-16 01:01:40 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  -4.74760785492387 in  0.5  radius.
  2023-02-16 01:01:40 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  -3.74760785492387 in  0.5  radius.
  2023-02-16 01:01:40 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  21.2523921450761 in  0.5  radius.
  2023-02-16 01:01:40 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  22.2523921450761 in  0.5  radius.
  2023-02-16 01:01:40 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  23.2523921450761 in  0.5  radius.
  2023-02-16 01:01:41 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 100)
  2023-02-16 01:01:41 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 1000) ... 
  2023-02-16 01:01:41 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 1000)
  2023-02-16 01:01:41 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:01:57 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 98) ... 
  2023-02-16 01:01:57 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  17.0145640770203 in  0.5  radius.
  2023-02-16 01:01:58 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 2058)
  2023-02-16 01:02:01 gimli 1109690 CausalGPS estimate_gps WARN:  Vector w has 1 missing values.
  2023-02-16 01:02:01 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:02:24 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 196) ... 
  2023-02-16 01:02:24 gimli 1109690 CausalGPS FUN WARN:  There is no data to match with  -1.26798024301974 in  0.5  radius.
  2023-02-16 01:02:25 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 4704)
  2023-02-16 01:03:15 gimli 1109690 CausalGPS estimate_npmetric_erf INFO:  The band width with the minimum risk value: 0.6.
  2023-02-16 01:03:17 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:23 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 490) ... 
  2023-02-16 01:03:24 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 490)
  2023-02-16 01:03:24 gimli 1109690 CausalGPS generate_pseudo_pop WARN:  Effective sample size is less than recommended.Current: 26.1426863179163, recommended min value: 49.
  2023-02-16 01:03:24 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:27 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:27 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:03:28 gimli 1109690 CausalGPS generate_pseudo_pop WARN:  Effective sample size is less than recommended.Current: 20.5023661048217, recommended min value: 46.
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:28 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:31 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:31 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:03:32 gimli 1109690 CausalGPS generate_pseudo_pop WARN:  Effective sample size is less than recommended.Current: 3.24085816396445, recommended min value: 46.
  2023-02-16 01:03:32 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:34 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:35 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:03:39 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:40 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:03:43 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:44 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:03:47 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:48 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:03:48 gimli 1109690 CausalGPS generate_pseudo_pop WARN:  Effective sample size is less than recommended.Current: 20.5161021345085, recommended min value: 46.
  2023-02-16 01:03:48 gimli 1109690 CausalGPS log_system_info INFO:  System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.2.2 (2022-10-31), detected cores: 32
  2023-02-16 01:03:50 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:51 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:03:52 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:53 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:03:55 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:56 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:03:58 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:03:59 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:04:00 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:04:01 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:04:03 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:04:04 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:04:05 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Starting compiling pseudo population  (original data size: 460) ... 
  2023-02-16 01:04:06 gimli 1109690 CausalGPS compile_pseudo_pop INFO:  Finished compiling pseudo population  (Pseudo population data size: 460)
  2023-02-16 01:04:06 gimli 1109690 CausalGPS generate_pseudo_pop WARN:  Effective sample size is less than recommended.Current: 22.7748385392029, recommended min value: 46.
  [ FAIL 8 | WARN 24 | SKIP 3 | PASS 196 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • earth cannot be loaded (3)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-absolute_weighted_corr_fun.R:10'): absoulte_weighted_corr_fun works as expected. ──
  val1$mean_absolute_corr not equal to 0.09003267.
  1/1 mismatches
  [1] 0.0851 - 0.09 == -0.00489
  ── Failure ('test-absolute_weighted_corr_fun.R:11'): absoulte_weighted_corr_fun works as expected. ──
  val1$median_absolute_corr not equal to 0.07821234.
  1/1 mismatches
  [1] 0.0691 - 0.0782 == -0.00908
  ── Failure ('test-absolute_weighted_corr_fun.R:12'): absoulte_weighted_corr_fun works as expected. ──
  val1$maximal_absolute_corr not equal to 0.2222087.
  1/1 mismatches
  [1] 0.218 - 0.222 == -0.00434
  ── Failure ('test-generate_pseudo_pop.R:37'): generate_pseudo_pop works as expected. ──
  ps_pop1$adjusted_corr_results$mean_absolute_corr not equal to 0.2580037.
  1/1 mismatches
  [1] 0.258 - 0.258 == 4.44e-05
  ── Failure ('test-generate_pseudo_pop.R:75'): generate_pseudo_pop works as expected. ──
  ps_pop2$adjusted_corr_results$mean_absolute_corr not equal to 0.2243034.
  1/1 mismatches
  [1] 0.224 - 0.224 == -0.000124
  ── Failure ('test-generate_pseudo_pop.R:279'): generate_pseudo_pop works as expected. ──
  ps_pop3$adjusted_corr_results$mean_absolute_corr not equal to 0.4481222.
  1/1 mismatches
  [1] 0.375 - 0.448 == -0.0731
  ── Failure ('test-generate_pseudo_pop.R:306'): generate_pseudo_pop works as expected. ──
  ps_pop4$adjusted_corr_results$mean_absolute_corr not equal to 0.2210705.
  1/1 mismatches
  [1] 0.221 - 0.221 == -9.3e-05
  ── Failure ('test-generate_pseudo_pop.R:333'): generate_pseudo_pop works as expected. ──
  ps_pop5$adjusted_corr_results$mean_absolute_corr not equal to 0.1078871.
  1/1 mismatches
  [1] 0.108 - 0.108 == -0.000196
  
  [ FAIL 8 | WARN 24 | SKIP 3 | PASS 196 ]
  Error: Test failures
  Execution halted