Undocumented code objects:
  ‘.abf’ ‘.abfSig’ ‘.allFreq’ ‘.applySidakCorrection’ ‘.applyTrans’
  ‘.as.numeric1’ ‘.backwardSelection’ ‘.bafratio’ ‘.calcExpectedGeno’
  ‘.calcOffset’ ‘.calcPPA’ ‘.centralise’ ‘.chol’ ‘.cholesky’
  ‘.closeGenoConnection’ ‘.cnt’ ‘.cntNa’ ‘.cntVec’ ‘.cnvdistr’
  ‘.convAvgToUnc’ ‘.convAvgToUncM’ ‘.convAvgToUncMat’
  ‘.convertFactorToMatrix’ ‘.convertMatrixToFactor’ ‘.countIn’
  ‘.destandardise’ ‘.entropy’ ‘.estSigma’ ‘.expDist’ ‘.expand’
  ‘.expand2’ ‘.expandCoeff’ ‘.expandDat’ ‘.expandGenoToDist’
  ‘.expandGenoToDistAll’ ‘.extractIds’ ‘.extractIdsMat’
  ‘.extractIdsVec’ ‘.extractNames’ ‘.extractSig’ ‘.extractSig1’
  ‘.extractSig1P’ ‘.extractSigExact’ ‘.extractSigP’ ‘.fillMissing’
  ‘.findIn’ ‘.findInclusion’ ‘.findInd’ ‘.findmax’ ‘.fisherPvalue’
  ‘.fixDuplicatesInTodo’ ‘.fixGenoCols’ ‘.fixNonNumeric’ ‘.flatten’
  ‘.flattenBetaX’ ‘.formatTable’ ‘.fprint’ ‘.genRandCovar’ ‘.getArray’
  ‘.getAvg’ ‘.getAvgAll’ ‘.getAvgWeights’ ‘.getCNProfile’ ‘.getDim’
  ‘.getFamily’ ‘.getGlm’ ‘.getHWE’ ‘.getHist’ ‘.getIMatrix’ ‘.getIncl’
  ‘.getLast’ ‘.getLimitMatrixFromList’ ‘.getMaf’ ‘.getOnes’ ‘.getPv’
  ‘.getPvLrr’ ‘.getPvLrrAllGen’ ‘.getPvLrrMult’ ‘.getPvLrrMultiGen’
  ‘.getPvLrrMultiGen1’ ‘.getPvLrrMultiGenNoVS’ ‘.getPvLrrMultiGenVS’
  ‘.getPvRev’ ‘.getPvRevPleio’ ‘.getPvRevPleioVS’ ‘.getPvRevPleio_’
  ‘.getPvTable’ ‘.getSuffix’ ‘.getSumBetaX’ ‘.getUNum1Matrix’
  ‘.getVCFDimNames’ ‘.getVCFProcess’ ‘.getVCFSplit’ ‘.getin’ ‘.getin1’
  ‘.getin2’ ‘.glm1’ ‘.gs’ ‘.heatm’ ‘.hwep’ ‘.hwepall’ ‘.hwestat’
  ‘.iscase’ ‘.joinRes’ ‘.joinResVec’ ‘.length’ ‘.lrt’ ‘.mPhen’ ‘.mabf’
  ‘.mafCount’ ‘.makeColsForBed’ ‘.makeFactor’ ‘.makeGenoWeights’
  ‘.makeNumeric’ ‘.makeQuantile’ ‘.makeThresh’ ‘.makeTopTail’ ‘.manh’
  ‘.manhattan’ ‘.manhattanBed’ ‘.mergeAlleleCols’ ‘.mergeFiles’
  ‘.mergeLists’ ‘.metaAnalysis’ ‘.metaresFisher’ ‘.metaresHetMeasure’
  ‘.metaresInvVarianceFixed’ ‘.minOneMinus’ ‘.mod’ ‘.mod1’
  ‘.nonNumeric’ ‘.nonNumeric1’ ‘.nullDim’ ‘.numLev’ ‘.nyholdtSidak’
  ‘.openGenoConnection’ ‘.openOutputConnection’ ‘.openPlinkConnection’
  ‘.openVCFConnection’ ‘.openZipConnection’ ‘.ordTest’ ‘.ordTest1’
  ‘.ordTest2’ ‘.ordTestUnivariate’ ‘.orthogonalise’ ‘.pFromSEBeta’
  ‘.parseOpts’ ‘.plotBaf’ ‘.plotFingerprint’ ‘.pow’ ‘.proc’ ‘.proc1’
  ‘.projOut’ ‘.pseudoInv’ ‘.qb’ ‘.qq’ ‘.qqplot’ ‘.readGenoConnection’
  ‘.readHeader’ ‘.readLimitFile’ ‘.readLinesPlink’ ‘.readPhen’
  ‘.readPlinkConnection’ ‘.readVCFConnection’ ‘.readZip’
  ‘.readZipConnection’ ‘.reduceWeightsToGeno’ ‘.reopenConnection’
  ‘.rescale’ ‘.sampDirichlet’ ‘.sampJoint’ ‘.sample1’ ‘.seFromPBeta’
  ‘.splitImputed’ ‘.standardise’ ‘.subSample’ ‘.sum1’
  ‘.summariseBootstrap’ ‘.tabulateWithWeights’ ‘.trL’ ‘.unchanged’
  ‘.updateRelatedness’ ‘.updateSampleQC’ ‘.writeBed’ ‘.writeTable’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.