'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'swephRdata'
Running examples in 'SwimmeR-Ex.R' failed
The error most likely occurred in:

> ### Name: name_reorder
> ### Title: Orders all names as "Firstname Lastname"
> ### Aliases: name_reorder
> 
> ### ** Examples
> 
> name_reorder(
+ data.frame(
+ Name = c("King, Lilly",
+  "Lilly King",
+  NA,
+  "Richards Ross, Sanya",
+  "Phelps, Michael F")),
+ verbose = TRUE
+ )
Error in `dplyr::na_if()`:
! Can't convert `y` <character> to match type of `x` <data.frame>.
Backtrace:
     x
  1. +-SwimmeR::name_reorder(...)
  2. | \-... %>% ...
  3. +-dplyr::mutate(...)
  4. +-dplyr::na_if(., "")
  5. | \-vctrs::vec_cast(x = y, to = x, x_arg = "y", to_arg = "x")
  6. +-dplyr::mutate(...)
  7. +-dplyr::na_if(., "")
  8. | \-vctrs::vec_cast(x = y, to = x, x_arg = "y", to_arg = "x")
  9. \-vctrs (local) `<fn>`()
 10.   \-vctrs::vec_default_cast(...)
 11.     +-base::withRestarts(...)
 12.     | \-base (local) withOneRestart(expr, restarts[[1L]])
 13.     |   \-base (local) doWithOneRestart(return(expr), restart)
 14.     \-vctrs::stop_incompatible_cast(...)
 15.       \-vctrs::stop_incompatible_type(...)
 16.         \-vctrs:::stop_incompatible(...)
 17.           \-vctrs:::stop_vctrs(...)
 18.             \-rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call))
Execution halted
Error(s) in re-building vignettes:
--- re-building 'SwimmeR.Rmd' using rmarkdown
Quitting from lines 60-66 (SwimmeR.Rmd) 
Error: processing vignette 'SwimmeR.Rmd' failed with diagnostics:
Can't convert `y` <character> to match type of `x` <data.frame>.
--- failed re-building 'SwimmeR.Rmd'

SUMMARY: processing the following file failed:
  'SwimmeR.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'winpath.R' [14s]
Running the tests in 'tests/winpath.R' failed.
Complete output:
  > library(switchr)
  > ## if(getOption("repos")["CRAN"] == "@CRAN@")
  > ##     chooseCRANmirror(ind=1L)
  > graceful_inet(TRUE)
  [1] TRUE
  > checkUrlRoundtrip = function(pth) {
  +     pth = switchr:::normalizePath2(pth)
  +     furl = switchr:::makeFileURL(pth)
  +     pth2 = switchr:::fileFromFileURL(furl)
  +     if(pth != pth2)
  +         stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
  + }
  > 
  > ## regression test to ensure that the roundtrip
  > ## between path and file url is working properly
  > checkUrlRoundtrip(getwd())
  > checkUrlRoundtrip(tempdir())
  > if(switchr:::isWindows())
  +     checkUrlRoundtrip("\\\\localhost\\c$")
  > 
  > ## regreossion test to ensure that package dependencies
  > ## are added to the dontunload list when a package
  > ## is specified
  > bef = switchrDontUnload()
  > af = switchrDontUnload("knitr")
  Switchr needs a default CRAN mirror set via R options. Using the cloud mirror. This happens only when no CRAN mirror is selected *and* the BiocInstaller package is not installed.
  Warning: unable to access index for repository http://bioconductor.org/packages/3.13/bioc/src/contrib:
    cannot open URL 'http://bioconductor.org/packages/3.13/bioc/src/contrib/PACKAGES'
  Warning: unable to access index for repository http://bioconductor.org/packages/3.13/data/annotation/src/contrib:
    cannot open URL 'http://bioconductor.org/packages/3.13/data/annotation/src/contrib/PACKAGES'
  Warning: unable to access index for repository http://bioconductor.org/packages/3.13/data/experiment/src/contrib:
    cannot open URL 'http://bioconductor.org/packages/3.13/data/experiment/src/contrib/PACKAGES'
  > stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
  Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
  Execution halted
'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   5.0Mb
Packages suggested but not available for checking: 'sylly.de', 'sylly.es'
'LazyData' is specified without a 'data' directory
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    libs     6.3Mb
    mylibs   1.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'unix'
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    R         1.3Mb
    extdata   3.1Mb
'LazyData' is specified without a 'data' directory
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   4.3Mb
    libs   2.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc   5.9Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/experiment/src/contrib/PACKAGES'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'tashudata'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.1/TDA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    apps   1.3Mb
    libs   2.9Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   2.4Mb
    libs   3.1Mb
'LazyData' is specified without a 'data' directory
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    doc       3.7Mb
    libs      2.2Mb
    telemac   1.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc   4.5Mb
'LazyData' is specified without a 'data' directory
installed size is 115.0Mb
  sub-directories of 1Mb or more:
    R       2.0Mb
    gdal    2.2Mb
    libs  101.0Mb
    proj    8.7Mb
installed size is 29.7Mb
  sub-directories of 1Mb or more:
    doc        1.0Mb
    libs      14.5Mb
    tessdata  14.0Mb
Package suggested but not available for checking: 'gurobi'
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   2.8Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    data   5.7Mb
'LazyData' is specified without a 'data' directory
installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data   2.6Mb
    doc    3.0Mb
    libs   2.5Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   5.6Mb
Error(s) in re-building vignettes:
--- re-building 'huggingface_in_r.Rmd' using rmarkdown
Error: processing vignette 'huggingface_in_r.Rmd' failed with diagnostics:
object 'preview_math' not found
--- failed re-building 'huggingface_in_r.Rmd'

--- re-building 'huggingface_in_r_and_computer_capacity.Rmd' using rmarkdown
Error: processing vignette 'huggingface_in_r_and_computer_capacity.Rmd' failed with diagnostics:
object 'preview_math' not found
--- failed re-building 'huggingface_in_r_and_computer_capacity.Rmd'

--- re-building 'huggingface_in_r_extended_installation_guide.Rmd' using rmarkdown
--- finished re-building 'huggingface_in_r_extended_installation_guide.Rmd'

--- re-building 'pre-registration_and_transformers.Rmd' using rmarkdown
Error: processing vignette 'pre-registration_and_transformers.Rmd' failed with diagnostics:
object 'preview_math' not found
--- failed re-building 'pre-registration_and_transformers.Rmd'

--- re-building 'removing_huggingface_transformers_cache_files.Rmd' using rmarkdown
Error: processing vignette 'removing_huggingface_transformers_cache_files.Rmd' failed with diagnostics:
object 'preview_math' not found
--- failed re-building 'removing_huggingface_transformers_cache_files.Rmd'

--- re-building 'singularity_transformers_container.Rmd' using rmarkdown
Error: processing vignette 'singularity_transformers_container.Rmd' failed with diagnostics:
object 'preview_math' not found
--- failed re-building 'singularity_transformers_container.Rmd'

--- re-building 'text.Rmd' using rmarkdown
Error: processing vignette 'text.Rmd' failed with diagnostics:
object 'preview_math' not found
--- failed re-building 'text.Rmd'

SUMMARY: processing the following files failed:
  'huggingface_in_r.Rmd' 'huggingface_in_r_and_computer_capacity.Rmd'
  'pre-registration_and_transformers.Rmd'
  'removing_huggingface_transformers_cache_files.Rmd'
  'singularity_transformers_container.Rmd' 'text.Rmd'

Error: Vignette re-building failed.
Execution halted
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    extdata   2.9Mb
    libs      2.1Mb
'LazyData' is specified without a 'data' directory
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   3.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc    2.7Mb
    libs   2.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data   1.1Mb
    rda    7.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    R      4.1Mb
    data   3.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc           1.6Mb
    htmlwidgets   2.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    libs   5.6Mb
GNU make is a SystemRequirements.
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/experiment/src/contrib/PACKAGES'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'spelling.R' [0s]
  Running 'testthat.R' [24s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(tidyCDISC)
  > library(shinyjs)
  
  Attaching package: 'shinyjs'
  
  The following objects are masked from 'package:methods':
  
      removeClass, show
  
  > 
  > test_check("tidyCDISC")
  [ FAIL 1 | WARN 13 | SKIP 15 | PASS 97 ]
  
  == Skipped tests ===============================================================
  * empty test (15)
  
  == Failed tests ================================================================
  -- Failure ('test-mod_indvExp_fct_buildEvents.R:60'): build_events fun ---------
  colnames(...) not equal to c("START", "DECODE", "EVENTTYP", "DOMAIN", "END", "tab_st", "tab_en").
  7/7 mismatches
  x[1]: "EVENTTYP"
  y[1]: "START"
  
  x[2]: "START"
  y[2]: "DECODE"
  
  x[3]: "END"
  y[3]: "EVENTTYP"
  
  x[4]: "tab_st"
  y[4]: "DOMAIN"
  
  x[5]: "tab_en"
  y[5]: "END"
  
  [ FAIL 1 | WARN 13 | SKIP 15 | PASS 97 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/experiment/src/contrib/PACKAGES'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc   4.4Mb
'LazyData' is specified without a 'data' directory
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   5.9Mb
'LazyData' is specified without a 'data' directory
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    doc       2.1Mb
    extdata   4.5Mb
installed size is 32.9Mb
  sub-directories of 1Mb or more:
    libs  30.7Mb
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'tpr_intro.Rmd' using rmarkdown
Quitting from lines 318-319 (tpr_intro.Rmd) 
Error: processing vignette 'tpr_intro.Rmd' failed with diagnostics:
Please install xml2 package
--- failed re-building 'tpr_intro.Rmd'

SUMMARY: processing the following file failed:
  'tpr_intro.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Illegal parameter number in definition of \Hy@tempa.
<to be read again> 
                   D
l.965 visjs documentation}}
                           .
! Illegal parameter number in definition of \Hy@tempa.
<to be read again> 
                   D
l.965 visjs documentation}}
                           .
! Illegal parameter number in definition of \Hy@tempa.
<to be read again> 
                   D
l.965 visjs documentation}}
                           .
! Illegal parameter number in definition of \Hy@tempa.
<to be read again> 
                   g
l.1021 visjs documentation}}
                            .
! Illegal parameter number in definition of \Hy@tempa.
<to be read again> 
                   g
l.1021 visjs documentation}}
                            .
! Illegal parameter number in definition of \Hy@tempa.
<to be read again> 
                   g
l.1021 visjs documentation}}
                            .
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
    libs   1.9Mb
'LazyData' is specified without a 'data' directory
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   5.1Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc    2.3Mb
    libs   2.6Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 23.8Mb
  sub-directories of 1Mb or more:
    examples  19.6Mb
    include    3.5Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'Rcampdf', 'Rpoppler', 'tm.lexicon.GeneralInquirer'
Package unavailable to check Rd xrefs: 'Rpoppler'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'corpus.JSS.papers'
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    data   7.2Mb
installed size is 39.9Mb
  sub-directories of 1Mb or more:
    R         5.2Mb
    help      1.6Mb
    include   1.5Mb
    libs     31.1Mb
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'toscaData'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   2.4Mb
    doc    2.7Mb
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'taxidata'
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   5.1Mb
'LazyData' is specified without a 'data' directory
installed size is 23.0Mb
  sub-directories of 1Mb or more:
    doc    2.1Mb
    libs  20.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'TreeDistData'
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    doc    4.8Mb
    libs   2.4Mb
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Warning: replacing previous import 'ape::where' by 'dplyr::where' when loading 'treeplyr'
See 'd:/Rcompile/CRANpkg/local/4.1/treeplyr.Rcheck/00install.out' for details.
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    datasets   1.6Mb
    libs       2.2Mb
'LazyData' is specified without a 'data' directory
installed size is 16.6Mb
  sub-directories of 1Mb or more:
    data      1.3Mb
    extdata  14.8Mb
installed size is 17.8Mb
  sub-directories of 1Mb or more:
    doc    3.8Mb
    libs  12.9Mb
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
    libs   2.3Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'sl3'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.9Mb
  sub-directories of 1Mb or more:
    doc     7.0Mb
    ubinc   2.0Mb
installed size is 10.4Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    doc    1.0Mb
    libs   7.8Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc        1.4Mb
    shinyapp   3.4Mb
installed size is  9.6Mb
  sub-directories of 1Mb or more:
    doc         1.4Mb
    dummydata   1.4Mb
    libs        5.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    help   4.3Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/experiment/src/contrib/PACKAGES'
'LazyData' is specified without a 'data' directory
installed size is 26.5Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    libs  23.6Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    doc   7.6Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'USAboundariesData'
Package suggested but not available for checking: 'USA.state.boundaries.data'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    extdata   6.6Mb
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
installed size is 25.0Mb
  sub-directories of 1Mb or more:
    doc    1.7Mb
    libs  23.2Mb
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'vaers', 'vaersND'
Packages suggested but not available for checking: 'vaers', 'vaersND'
'LazyData' is specified without a 'data' directory
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    doc    2.2Mb
    libs   5.0Mb
'LazyData' is specified without a 'data' directory
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    extdata   8.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 109.4Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    gdal      2.2Mb
    libs     94.7Mb
    proj      8.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
--- re-building 'VedicDateTime.Rmd' using rmarkdown
Error: processing vignette 'VedicDateTime.Rmd' failed with diagnostics:
Using a custom highlighting style requires Pandoc 2.0 and above
--- failed re-building 'VedicDateTime.Rmd'

SUMMARY: processing the following file failed:
  'VedicDateTime.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'vegalite-Ex.R' failed
The error most likely occurred in:

> ### Name: from_spec
> ### Title: Take a JSON Vega-Lite Spec and render as an htmlwidget
> ### Aliases: from_spec
> 
> ### ** Examples
> 
> from_spec("http://rud.is/dl/embedded.json")
Warning in file(con, "r") :
  InternetOpenUrl failed: 'Die Serververbindung wurde zurückgesetzt.'
Error in file(con, "r") : cannot open the connection
Calls: from_spec -> readLines -> file
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  8.0Mb
  sub-directories of 1Mb or more:
    R      4.1Mb
    help   2.9Mb
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    doc    2.7Mb
    libs   2.1Mb
'LazyData' is specified without a 'data' directory
installed size is 10.3Mb
  sub-directories of 1Mb or more:
    doc    1.4Mb
    libs   8.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    help          1.3Mb
    htmlwidgets   5.0Mb
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
installed size is 10.7Mb
  sub-directories of 1Mb or more:
    doc           2.0Mb
    htmlwidgets   6.8Mb
'LazyData' is specified without a 'data' directory
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc   5.5Mb
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   5.7Mb
'LazyData' is specified without a 'data' directory
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    doc       5.4Mb
    extdata   1.1Mb
'LazyData' is specified without a 'data' directory
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    libs   6.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    extdata   8.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    libs   8.2Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.2Mb
  sub-directories of 1Mb or more:
    R      1.2Mb
    doc    5.5Mb
    libs   2.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'wcep-Ex.R' failed
The error most likely occurred in:

> ### Name: wcep
> ### Title: Analysis of weighted composite endpoints
> ### Aliases: wcep
> 
> ### ** Examples
> 
> data(toyexample)
> #event weights
> EW <- data.frame(event = c('CHF','DTH','SHK','REMI'), weight = c(0.3,1,0.5,0.2))
> res1 <- wcep(toyexample, EW)
Error in `left_join()`:
! `...` must be empty.
x Problematic argument:
* stringsAsFactors = FALSE
Backtrace:
    x
 1. \-wcep::wcep(toyexample, EW)
 2.   \-wcep:::wcep_core(x[, 1:3], EW, alpha)
 3.     +-dplyr::left_join(ew_h0, ew1, by = "event", stringsAsFactors = FALSE)
 4.     \-dplyr:::left_join.data.frame(ew_h0, ew1, by = "event", stringsAsFactors = FALSE)
 5.       \-rlang::check_dots_empty0(...)
 6.         \-rlang::check_dots_empty(call = call)
 7.           \-rlang:::action_dots(...)
 8.             +-base (local) try_dots(...)
 9.             \-rlang (local) action(...)
Execution halted
'LazyData' is specified without a 'data' directory
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.14/data/experiment/src/contrib/PACKAGES'
Package suggested but not available for checking: 'prepr'
'LazyData' is specified without a 'data' directory
installed size is 10.1Mb
  sub-directories of 1Mb or more:
    client   8.9Mb
    doc      1.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    libs   9.6Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
'LazyData' is specified without a 'data' directory
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    R      1.2Mb
    libs   2.2Mb
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'wikiTools-Ex.R' failed
The error most likely occurred in:

> ### Name: extractWiki
> ### Title: Extract the first paragraph of a Wikipedia article with a
> ###   maximum of characters.
> ### Aliases: extractWiki
> 
> ### ** Examples
> 
> ## Obtaining information in English Wikidata
> names <- c("William Shakespeare", "Pablo Picasso")
> info <- getWikiInf(names)
> info$text <- extractWiki(info$label)
Warning in open.connection(con, "rb") :
  InternetOpenUrl failed: 'Die Serververbindung konnte nicht hergestellt werden.'
Error in open.connection(con, "rb") : cannot open the connection
Calls: extractWiki ... parse_and_simplify -> parseJSON -> parse_con -> open -> open.connection
Execution halted
'LazyData' is specified without a 'data' directory
.__A__.1 : <anonymous>: no visible binding for global variable '.hwnd'
Undefined global functions or variables:
  .hwnd
Error(s) in re-building vignettes:
--- re-building 'vignette.Rmd' using rmarkdown
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
LaTeX failed to compile d:/RCompile/CRANpkg/local/4.1/WINS.Rcheck/vign_test/WINS/vignettes/vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See vignette.log for more info.
--- failed re-building 'vignette.Rmd'

SUMMARY: processing the following file failed:
  'vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    bn   7.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    data   6.5Mb
Malformed Description field: should contain one or more complete sentences.
installed size is 12.6Mb
  sub-directories of 1Mb or more:
    data  12.6Mb
Malformed Description field: should contain one or more complete sentences.
installed size is 11.2Mb
  sub-directories of 1Mb or more:
    data  11.1Mb
installed size is 11.4Mb
  sub-directories of 1Mb or more:
    data  11.3Mb
installed size is 11.3Mb
  sub-directories of 1Mb or more:
    data  11.2Mb
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.1/wrappedtools.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc       3.6Mb
    extdata   2.4Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   3.5Mb
    libs   2.0Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    libs   6.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  src/predictor/cpu_predictor.cc:167:27: warning: narrowing conversion of '(long long unsigned int)beg' from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} inside { } [-Wnarrowing]
See 'd:/Rcompile/CRANpkg/local/4.1/xgboost.Rcheck/00install.out' for details.
installed size is 10.0Mb
  sub-directories of 1Mb or more:
    libs   9.2Mb
GNU make is a SystemRequirements.
Running examples in 'xgboost-Ex.R' failed
The error most likely occurred in:

> ### Name: xgb.set.config, xgb.get.config
> ### Title: Set and get global configuration
> ### Aliases: 'xgb.set.config, xgb.get.config' xgb.set.config xgb.get.config
> 
> ### ** Examples
> 
> # Set verbosity level to silent (0)
> xgb.set.config(verbosity = 0)
[1] TRUE
> # Now global verbosity level is 0
> config <- xgb.get.config()
> print(config$verbosity)
[1] 0
> # Set verbosity level to warning (1)
> xgb.set.config(verbosity = 1)
[1] TRUE
> # Now global verbosity level is 1
> config <- xgb.get.config()
> print(config$verbosity)
[1] 1
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  25.35 1.25 25.19 NA NA 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 26.9Mb
  sub-directories of 1Mb or more:
    java  24.5Mb
'LazyData' is specified without a 'data' directory
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    java  10.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    exampleData   1.3Mb
    libs          4.2Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(xpectr)
  > 
  > test_check("xpectr")
  [ FAIL 1 | WARN 10 | SKIP 2 | PASS 841 ]
  
  == Skipped tests ===============================================================
  * skipping due to breaking changes in R 4.0.0 (2)
  
  == Failed tests ================================================================
  -- Failure ('test_capture_side_effects.R:30'): capture_side_effects() works with tibbles --
  strip(output_10856[["error"]]) %in% ... is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 1 | WARN 10 | SKIP 2 | PASS 841 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   6.6Mb
'LazyData' is specified without a 'data' directory
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    include   4.0Mb
    libs      2.1Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is 21.6Mb
  sub-directories of 1Mb or more:
    libs  19.7Mb
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
GNU make is a SystemRequirements.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    libs   5.1Mb
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Running examples in 'YRmisc-Ex.R' failed
The error most likely occurred in:

> ### Name: xd.fred
> ### Title: Download data from Federal Reserve Bank of St. Louis
> ### Aliases: xd.fred
> 
> ### ** Examples
> 
>  cpi <- xd.fred("CPIAUCSL") # CPI data
Warning in file(file, "rt") :
  InternetOpenUrl failed: 'Die Serververbindung konnte nicht hergestellt werden.'
Error in file(file, "rt") : cannot open the connection
Calls: xd.fred -> read.csv -> read.table -> file
Execution halted
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    R      2.1Mb
    libs   2.6Mb
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode char â (U+2010)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
Running 'testthat.R' [197s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(zipangu)
  > 
  > test_check("zipangu")
  [ FAIL 3 | WARN 16 | SKIP 2 | PASS 142 ]
  
  == Skipped tests ===============================================================
  * On CRAN (2)
  
  == Failed tests ================================================================
  -- Failure ('test-jyear.R:10'): convert jyear works ----------------------------
  convert_jyear("<U+5E73><U+6210><U+5143><U+5E74>") not equal to convert_jyear("H1").
  1/1 mismatches
  [1] NA - 1989 == NA
  -- Failure ('test-jyear.R:33'): convert japanese date format -------------------
  convert_jdate("<U+4EE4><U+548C>2<U+5E74>7<U+6708>6<U+65E5>") not equal to as.Date("2020-07-06").
  'is.NA' value mismatch: 0 in current 1 in target
  -- Failure ('test-jyear.R:45'): convert japanese date format -------------------
  convert_jdate(...) not equal to as.Date(c("2018-01-01", "2018-02-01", NA)).
  'is.NA' value mismatch: 1 in current 3 in target
  
  [ FAIL 3 | WARN 16 | SKIP 2 | PASS 142 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'zdat'
Running examples in 'zoon-Ex.R' failed
The error most likely occurred in:

> ### Name: ModuleArguments
> ### Title: ModuleArguments
> ### Aliases: ModuleArguments
> 
> ### ** Examples
> 
> ModuleArguments('Background')
Error in ModuleArguments("Background") : 
  URL for module does not exist: https://raw.githubusercontent.com/zoonproject/modules/master/R/Background.R
Execution halted
'LazyData' is specified without a 'data' directory