Error(s) in re-building vignettes:
--- re-building ‘CRS_projections_transformations.Rmd’ using rmarkdown
--- finished re-building ‘CRS_projections_transformations.Rmd’

--- re-building ‘PROJ6_GDAL3.Rmd’ using rmarkdown
hgridshift: could not find required grid(s).
pipeline: Pipeline: Bad step definition: proj=hgridshift (File not found or invalid)
hgridshift: could not find required grid(s).
pipeline: Pipeline: Bad step definition: proj=hgridshift (File not found or invalid)
hgridshift: could not find required grid(s).
pipeline: Pipeline: Bad step definition: proj=hgridshift (File not found or invalid)
hgridshift: could not find required grid(s).
pipeline: Pipeline: Bad step definition: proj=hgridshift (File not found or invalid)
hgridshift: could not find required grid(s).
pipeline: Pipeline: Bad step definition: proj=hgridshift (File not found or invalid)
hgridshift: could not find required grid(s).
pipeline: Pipeline: Bad step definition: proj=hgridshift (File not found or invalid)
hgridshift: could not find required grid(s).
pipeline: Pipeline: Bad step definition: proj=hgridshift (File not found or invalid)
hgridshift: could not find required grid(s).
pipeline: Pipeline: Bad step definition: proj=hgridshift (File not found or invalid)
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
Warning: PROJ support is provided by the sf and terra packages among others
--- finished re-building ‘PROJ6_GDAL3.Rmd’

--- re-building ‘OGR_shape_encoding.Rnw’ using Sweave
Loading required package: sp
Please note that rgdal will be retired during 2023,
plan transition to sf/stars/terra functions using GDAL and PROJ
at your earliest convenience.
See https://r-spatial.org/r/2022/04/12/evolution.html and https://github.com/r-spatial/evolution
rgdal: version: 1.6-2, (SVN revision 1183)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.4.3, released 2022/04/22
Path to GDAL shared files: /usr/local/share/gdal
GDAL binary built with GEOS: TRUE 
Loaded PROJ runtime: Rel. 8.2.1, January 1st, 2022, [PJ_VERSION: 821]
Path to PROJ shared files: /data/gannet/ripley/.local/share/proj:/usr/local/share/proj:/usr/local/share/proj
PROJ CDN enabled: FALSE
Linking to sp version:1.5-1
To mute warnings of possible GDAL/OSR exportToProj4() degradation,
use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Warning: OGR support is provided by the sf and terra packages among others
Read 1 item
Error: processing vignette 'OGR_shape_encoding.Rnw' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘OGR_shape_encoding.Rnw’

SUMMARY: processing the following file failed:
  ‘OGR_shape_encoding.Rnw’

Error: Vignette re-building failed.
Execution halted