Error(s) in re-building vignettes:
  ...
--- re-building 'effect-of-climate-dependent-flux.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Don't know how to automatically pick scale for object of type <ts>. Defaulting
to continuous.
Killed
--- re-building 'introduction-to-sedproxy.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Using Rapid version
Warning in ClimToProxyClim(clim.signal = clim.in, timepoints = req.timepoints,  :
  Timepoint(s) 1, 101 are in the mixed layer
Joining, by = c("stage", "scale")
Scale for alpha is already present.
Adding another scale for alpha, which will replace the existing scale.
Using Rapid version
Warning in ClimToProxyClim(clim.signal = clim.in, timepoints = req.timepoints,  :
  Timepoint(s) 1, 101 are in the mixed layer
Joining, by = c("stage", "scale")
Scale for alpha is already present.
Adding another scale for alpha, which will replace the existing scale.
Using Rapid version
Warning in ClimToProxyClim(clim.signal = clim.in, timepoints = req.timepoints,  :
  Timepoint(s) 1, 101 are in the mixed layer
Using Rapid version
Warning in ClimToProxyClim(clim.signal = clim.in, timepoints = req.timepoints,  :
  Timepoint(s) 1, 101 are in the mixed layer
Using Rapid version
Warning in ClimToProxyClim(clim.signal = clim.in, timepoints = req.timepoints,  :
  Timepoint(s) 1, 101 are in the mixed layer
Using Rapid version
Warning in ClimToProxyClim(clim.signal = clim.in, timepoints = req.timepoints,  :
  Timepoint(s) 1, 101 are in the mixed layer
Using Rapid version
Warning in ClimToProxyClim(clim.signal = clim.in, timepoints = req.timepoints,  :
  Timepoint(s) 1, 101 are in the mixed layer
`summarise()` has grouped output by 'stage', 'timepoints'. You can override
using the `.groups` argument.
`summarise()` has grouped output by 'stage'. You can override using the
`.groups` argument.
--- finished re-building 'introduction-to-sedproxy.Rmd'

SUMMARY: processing the following file failed:
  'effect-of-climate-dependent-flux.Rmd'

Error: Vignette re-building failed.
Execution halted