Error(s) in re-building vignettes:
  ...
--- re-building ‘dynamAedes_local.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
Loading required package: spatstat.random
spatstat.random 3.0-1
Loading required package: spatstat.core
Loading required package: nlme
Loading required package: rpart
spatstat.core 2.4-4
Loading required package: spatstat.linnet
Loading required package: spatstat.explore
spatstat.explore 3.0-3

Attaching package: 'spatstat.explore'

The following objects are masked from 'package:spatstat.core':

    $<-.fv, BartCalc, CDF, CDF.density, CVforPCF, CressieReadName,
    CressieReadStatistic, CressieReadSymbol, Deviation, Emark,
    ExpSmoothLog, F3est, Fest, Fhazard, Finhom, FmultiInhom,
    FormatFaspFormulae, G3est, Gcross, Gdot, Gest, Gfox, Ginhom,
    Gmulti, GmultiInhom, Hest, Iest, Jcross, Jdot, Jest, Jfox, Jinhom,
    Jmulti, K3est, Kborder.engine, Kcross, Kcross.inhom, Kdot,
    Kdot.inhom, Kest, Kest.fft, Kinhom, Kmark, Kmeasure, Kmulti,
    Kmulti.inhom, Knone.engine, Kount, Krect.engine, Kscaled, Ksector,
    Kwtsum, Lcross, Lcross.inhom, Ldot, Ldot.inhom, Lest, Linhom,
    Lscaled, PPversion, QQversion, RelevantDeviation, Smooth,
    Smooth.fv, Smooth.im, Smooth.ppp, Smooth.solist, Smooth.ssf,
    Smoothfun, Smoothfun.ppp, Tstat, Vmark, Window.quadrattest,
    X2testEngine, [.fasp, [.fv, [.localpcfmatrix, [.rat, [.ssf, [<-.fv,
    adaptive.density, adjust.ratfv, allstats, alltypes, ang2rad,
    apply.ssf, as.data.frame.bw.optim, as.data.frame.envelope,
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    as.function.ssf, as.fv, as.fv.bw.optim, as.fv.data.frame,
    as.fv.fasp, as.fv.fv, as.fv.matrix, as.im.scan.test, as.im.ssf,
    as.owin.quadrattest, as.ppp.ssf, assemble.plot.objects, auc,
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    bermantestCalc, bermantestEngine, bind.fv, bind.ratfv,
    bits.envelope, bits.test, blur, bw.CvL, bw.CvLHeat, bw.abram,
    bw.diggle, bw.frac, bw.optim, bw.pcf, bw.ppl, bw.pplHeat,
    bw.relrisk, bw.scott, bw.scott.iso, bw.smoothppp, bw.stoyan,
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    circticks, clarkevans, clarkevans.test, clarkevansCalc, clusterset,
    collapse.anylist, collapse.fv, compatible.fasp, compatible.fv,
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    contour.ssf, cor.im, cov.im, cutoff2Dkernel, dclf.progress,
    dclf.sigtrace, dclf.test, density.ppp, density.ppplist,
    density.psp, density.splitppp, densityAdaptiveKernel,
    densityAdaptiveKernel.ppp, densityHeat, densityHeat.ppp,
    densityVoronoi, densityVoronoi.ppp, densitycrossEngine, densityfun,
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    f3Cengine, f3engine, fasp, findbestlegendpos, findcbind, flatfname,
    formula.fv, formula<-, formula<-.fv, fryplot, frypoints, fv,
    fvexprmap, fvlabelmap, fvlabels, fvlabels<-, fvlegend, fvnames,
    fvnames<-, g3Cengine, g3engine, getSumFun, good.correction.K,
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    hotbox, idw, image.ssf, implemented.for.K, increment.fv,
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    twostage.test, unmark.ssf, validate.angles, validate.weights,
    validate2Dkernel, vanilla.fv, varblock, weightedclosepairs,
    which.max.im, with.fv, with.ssf

Loading required package: spatstat.model
spatstat.model 3.0-2

Attaching package: 'spatstat.model'

The following objects are masked from 'package:spatstat.core':

    AIC.dppm, AIC.kppm, AIC.mppm, AIC.ppm, AreaInter, BadGey, Concom,
    DPPSaddle, DPPSaddlePairwise, DiggleGatesStibbard, DiggleGratton,
    Fiksel, GLMpredict, Gcom, Geyer, Gres, Hardcore, HierHard,
    HierStrauss, HierStraussHard, Hybrid, Kcom, Kmodel,
    Kmodel.detpointprocfamily, Kmodel.dppm, Kmodel.kppm, Kmodel.ppm,
    Kmodel.slrm, Kmodel.zclustermodel, Kpcf.kppm, Kres, LambertW,
    LennardJones, LurkEngine, Mayer, MultiHard, MultiStrauss,
    MultiStraussHard, Ops.msr, Ord, OrdThresh, PPMmodelmatrix,
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    Window.leverage.ppm, Window.msr, Window.ppm, Window.slrm,
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    anova.ppm, anova.slrm, areadelta2, as.function.leverage.ppm,
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    intensity.zclustermodel, intensity.zgibbsmodel,
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    newstyle.coeff.handling, nndcumfun, no.trend.ppm, nobs.dppm,
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    print.vblogit, print.zclustermodel, print.zgibbsmodel, printStatus,
    printStatusList, profilepl, project.ppm, prune.rppm, pseudoR2,
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    zclustermodel, zgibbsmodel

spatstat.linnet 3.0-2

spatstat 2.3-4       (nickname: 'Watch this space') 
For an introduction to spatstat, type 'beginner' 

Loading required package: sp
Loading required package: gstat

Attaching package: 'gstat'

The following object is masked from 'package:spatstat.explore':

    idw

The following object is masked from 'package:spatstat.core':

    idw

Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.0      ✔ purrr   0.3.5 
✔ tibble  3.1.8      ✔ dplyr   1.0.10
✔ tidyr   1.2.1      ✔ stringr 1.4.1 
✔ readr   2.1.3      ✔ forcats 0.5.2 
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::collapse() masks nlme::collapse()
✖ dplyr::filter()   masks stats::filter()
✖ dplyr::lag()      masks stats::lag()
Loading required package: geosphere

Attaching package: 'geosphere'

The following object is masked from 'package:spatstat.geom':

    perimeter

Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.11.0-CAPI-1.17.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-1 
 Polygon checking: TRUE 

Loading required package: dynamAedes
Loading required package: raster

Attaching package: 'raster'

The following object is masked from 'package:dplyr':

    select

The following object is masked from 'package:nlme':

    getData

starting worker pid=3563851 on localhost:11124 at 20:28:39.015
##########################################
## Life cycle iterations have begun... ##
##########################################
Loading required package: dynamAedes
Loading required package: raster
Loading required package: sp
loaded dynamAedes and set parent environment

  |                                                                            
  |%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%| 100%[1] "No active dispersing females today..."

2000-06-03. Day 1-- of iteration 1 has ended. Population is e: 0 i: 0 a: 4650 d: 0 eh: 0 el: 96587 
Max t: 28.528 

[1] "No active dispersing females today..."

2000-06-04. Day 2-- of iteration 1 has ended. Population is e: 96587 i: 0 a: 900 d: 0 eh: 0 el: 87383 
Max t: 33.067 


2000-06-05. Day 3-- of iteration 1 has ended. Population is e: 145106 i: 0 a: 682 d: 0 eh: 0 el: 0 
Max t: 33.176 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-06. Day 4-- of iteration 1 has ended. Population is e: 97461 i: 0 a: 560 d: 0 eh: 0 el: 12502 
Max t: 32.396 

[1] "No active dispersing females today..."

2000-06-07. Day 5-- of iteration 1 has ended. Population is e: 95240 i: 16739 a: 130 d: 0 eh: 16739 el: 10319 
Max t: 29.701 


2000-06-08. Day 6-- of iteration 1 has ended. Population is e: 71468 i: 32864 a: 113 d: 0 eh: 19361 el: 0 
Max t: 31.715 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-09. Day 7-- of iteration 1 has ended. Population is e: 46902 i: 39611 a: 94 d: 0 eh: 12574 el: 2425 
Max t: 31.506 

[1] "No active dispersing females today..."

2000-06-10. Day 8-- of iteration 1 has ended. Population is e: 30477 i: 30838 a: 19 d: 0 eh: 5845 el: 1977 
Max t: 33.415 


2000-06-11. Day 9-- of iteration 1 has ended. Population is e: 24688 i: 33285 a: 16 d: 0 eh: 8072 el: 0 
Max t: 31.558 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-12. Day 10-- of iteration 1 has ended. Population is e: 14437 i: 18081 a: 7 d: 0 eh: 2207 el: 268 
Max t: 34.528 

[1] "No active dispersing females today..."

2000-06-13. Day 11-- of iteration 1 has ended. Population is e: 11871 i: 16945 a: 691 d: 0 eh: 4099 el: 144 
Max t: 31.783 


2000-06-14. Day 12-- of iteration 1 has ended. Population is e: 7309 i: 7955 a: 879 d: 0 eh: 1110 el: 0 
Max t: 34.908 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-15. Day 13-- of iteration 1 has ended. Population is e: 6084 i: 7963 a: 1400 d: 0 eh: 2624 el: 8265 
Max t: 30.567 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-16. Day 14-- of iteration 1 has ended. Population is e: 11660 i: 8209 a: 1350 d: 0 eh: 1547 el: 17186 
Max t: 30.22 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-17. Day 15-- of iteration 1 has ended. Population is e: 19206 i: 704 a: 43 d: 0 eh: 1 el: 0 
Max t: 39.83 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-18. Day 16-- of iteration 1 has ended. Population is e: 13670 i: 652 a: 40 d: 0 eh: 597 el: 428 
Max t: 32.185 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-19. Day 17-- of iteration 1 has ended. Population is e: 8034 i: 635 a: 33 d: 0 eh: 273 el: 464 
Max t: 33.781 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-20. Day 18-- of iteration 1 has ended. Population is e: 4622 i: 1068 a: 24 d: 0 eh: 758 el: 411 
Max t: 34.575 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-21. Day 19-- of iteration 1 has ended. Population is e: 4085 i: 1804 a: 17 d: 0 eh: 996 el: 552 
Max t: 32.281 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-22. Day 20-- of iteration 1 has ended. Population is e: 3243 i: 1307 a: 7 d: 0 eh: 395 el: 263 
Max t: 34.466 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-23. Day 21-- of iteration 1 has ended. Population is e: 2760 i: 1105 a: 6 d: 0 eh: 426 el: 58 
Max t: 34.218 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-24. Day 22-- of iteration 1 has ended. Population is e: 2219 i: 1240 a: 15 d: 0 eh: 486 el: 0 
Max t: 33.042 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-25. Day 23-- of iteration 1 has ended. Population is e: 1587 i: 1203 a: 12 d: 0 eh: 405 el: 0 
Max t: 33.69 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-26. Day 24-- of iteration 1 has ended. Population is e: 1125 i: 1103 a: 16 d: 0 eh: 304 el: 354 
Max t: 33.53 

[1] "Laying diapausing eggs"

2000-06-27. Day 25-- of iteration 1 has ended. Population is e: 1154 i: 235 a: 9 d: 0 eh: 26 el: 0 
Max t: 38.147 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-28. Day 26-- of iteration 1 has ended. Population is e: 1012 i: 460 a: 21 d: 0 eh: 293 el: 0 
Max t: 32.12 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-29. Day 27-- of iteration 1 has ended. Population is e: 661 i: 596 a: 22 d: 0 eh: 195 el: 148 
Max t: 31.405 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-30. Day 28-- of iteration 1 has ended. Population is e: 515 i: 494 a: 19 d: 0 eh: 86 el: 680 
Max t: 33.832 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-01. Day 29-- of iteration 1 has ended. Population is e: 1042 i: 343 a: 23 d: 0 eh: 55 el: 300 
Max t: 34.434 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-02. Day 30-- of iteration 1 has ended. Population is e: 967 i: 230 a: 27 d: 0 eh: 46 el: 147 
Max t: 34.72 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-03. Day 31-- of iteration 1 has ended. Population is e: 905 i: 246 a: 24 d: 0 eh: 75 el: 604 
Max t: 32.843 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-04. Day 32-- of iteration 1 has ended. Population is e: 1341 i: 350 a: 38 d: 0 eh: 180 el: 444 
Max t: 31.574 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-05. Day 33-- of iteration 1 has ended. Population is e: 1189 i: 224 a: 30 d: 0 eh: 78 el: 287 
Max t: 36.498 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-06. Day 34-- of iteration 1 has ended. Population is e: 1243 i: 312 a: 32 d: 0 eh: 136 el: 349 
Max t: 33.088 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-07. Day 35-- of iteration 1 has ended. Population is e: 1335 i: 482 a: 23 d: 0 eh: 210 el: 438 
Max t: 31.992 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-08. Day 36-- of iteration 1 has ended. Population is e: 1400 i: 606 a: 17 d: 0 eh: 196 el: 277 
Max t: 33.313 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-09. Day 37-- of iteration 1 has ended. Population is e: 1302 i: 725 a: 15 d: 0 eh: 196 el: 77 
Max t: 33.38 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-10. Day 38-- of iteration 1 has ended. Population is e: 864 i: 554 a: 24 d: 0 eh: 90 el: 0 
Max t: 36.124 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-11. Day 39-- of iteration 1 has ended. Population is e: 670 i: 642 a: 33 d: 0 eh: 211 el: 202 
Max t: 33.931 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-12. Day 40-- of iteration 1 has ended. Population is e: 602 i: 598 a: 42 d: 0 eh: 130 el: 361 
Max t: 35.316 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-13. Day 41-- of iteration 1 has ended. Population is e: 776 i: 634 a: 45 d: 0 eh: 127 el: 719 
Max t: 32.632 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-14. Day 42-- of iteration 1 has ended. Population is e: 1224 i: 552 a: 67 d: 0 eh: 47 el: 785 
Max t: 34.101 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-15. Day 43-- of iteration 1 has ended. Population is e: 1778 i: 504 a: 81 d: 0 eh: 65 el: 816 
Max t: 32.916 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-16. Day 44-- of iteration 1 has ended. Population is e: 2197 i: 525 a: 78 d: 0 eh: 111 el: 1223 
Max t: 33.752 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-17. Day 45-- of iteration 1 has ended. Population is e: 3065 i: 729 a: 89 d: 1 eh: 318 el: 1362 
Max t: 31.605 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-18. Day 46-- of iteration 1 has ended. Population is e: 3863 i: 1108 a: 90 d: 1 eh: 472 el: 701 
Max t: 30.666 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-19. Day 47-- of iteration 1 has ended. Population is e: 2480 i: 676 a: 74 d: 0 eh: 114 el: 867 
Max t: 37.596 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-20. Day 48-- of iteration 1 has ended. Population is e: 2760 i: 789 a: 74 d: 0 eh: 305 el: 1068 
Max t: 34.574 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-21. Day 49-- of iteration 1 has ended. Population is e: 3343 i: 1359 a: 68 d: 0 eh: 645 el: 556 
Max t: 30.584 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-22. Day 50-- of iteration 1 has ended. Population is e: 2965 i: 1674 a: 56 d: 0 eh: 429 el: 1115 
Max t: 31.858 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-23. Day 51-- of iteration 1 has ended. Population is e: 3445 i: 2076 a: 75 d: 0 eh: 583 el: 1035 
Max t: 30.56 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-24. Day 52-- of iteration 1 has ended. Population is e: 2567 i: 1188 a: 65 d: 0 eh: 144 el: 199 
Max t: 37.626 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-25. Day 53-- of iteration 1 has ended. Population is e: 1966 i: 1078 a: 75 d: 0 eh: 256 el: 345 
Max t: 35.659 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-26. Day 54-- of iteration 1 has ended. Population is e: 1865 i: 1380 a: 89 d: 0 eh: 452 el: 956 
Max t: 32.225 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-27. Day 55-- of iteration 1 has ended. Population is e: 2117 i: 1424 a: 116 d: 0 eh: 330 el: 1095 
Max t: 33.831 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-28. Day 56-- of iteration 1 has ended. Population is e: 2678 i: 1528 a: 143 d: 0 eh: 313 el: 1028 
Max t: 31.699 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-29. Day 57-- of iteration 1 has ended. Population is e: 3148 i: 1550 a: 165 d: 0 eh: 238 el: 2082 
Max t: 31.456 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-30. Day 58-- of iteration 1 has ended. Population is e: 4727 i: 1861 a: 162 d: 0 eh: 496 el: 2219 
Max t: 30.678 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-31. Day 59-- of iteration 1 has ended. Population is e: 6110 i: 2307 a: 177 d: 0 eh: 677 el: 1791 
Max t: 30.967 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-08-01. Day 60-- of iteration 1 has ended. Population is e: 5573 i: 1892 a: 215 d: 0 eh: 319 el: 1999 
Max t: 35.589 




########################################
## Iterations concluded.              ##
########################################



Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
--- finished re-building ‘dynamAedes_local.Rmd’

--- re-building ‘dynamAedes_punctual.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
Loading required package: spatstat.random
spatstat.random 3.0-1
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Loading required package: nlme
Loading required package: rpart
spatstat.core 2.4-4
Loading required package: spatstat.linnet
Loading required package: spatstat.explore
spatstat.explore 3.0-3

Attaching package: 'spatstat.explore'

The following objects are masked from 'package:spatstat.core':

    $<-.fv, BartCalc, CDF, CDF.density, CVforPCF, CressieReadName,
    CressieReadStatistic, CressieReadSymbol, Deviation, Emark,
    ExpSmoothLog, F3est, Fest, Fhazard, Finhom, FmultiInhom,
    FormatFaspFormulae, G3est, Gcross, Gdot, Gest, Gfox, Ginhom,
    Gmulti, GmultiInhom, Hest, Iest, Jcross, Jdot, Jest, Jfox, Jinhom,
    Jmulti, K3est, Kborder.engine, Kcross, Kcross.inhom, Kdot,
    Kdot.inhom, Kest, Kest.fft, Kinhom, Kmark, Kmeasure, Kmulti,
    Kmulti.inhom, Knone.engine, Kount, Krect.engine, Kscaled, Ksector,
    Kwtsum, Lcross, Lcross.inhom, Ldot, Ldot.inhom, Lest, Linhom,
    Lscaled, PPversion, QQversion, RelevantDeviation, Smooth,
    Smooth.fv, Smooth.im, Smooth.ppp, Smooth.solist, Smooth.ssf,
    Smoothfun, Smoothfun.ppp, Tstat, Vmark, Window.quadrattest,
    X2testEngine, [.fasp, [.fv, [.localpcfmatrix, [.rat, [.ssf, [<-.fv,
    adaptive.density, adjust.ratfv, allstats, alltypes, ang2rad,
    apply.ssf, as.data.frame.bw.optim, as.data.frame.envelope,
    as.data.frame.fv, as.function.fv, as.function.rhohat,
    as.function.ssf, as.fv, as.fv.bw.optim, as.fv.data.frame,
    as.fv.fasp, as.fv.fv, as.fv.matrix, as.im.scan.test, as.im.ssf,
    as.owin.quadrattest, as.ppp.ssf, assemble.plot.objects, auc,
    auc.ppp, bandwidth.is.infinite, berman.test, berman.test.ppp,
    bermantestCalc, bermantestEngine, bind.fv, bind.ratfv,
    bits.envelope, bits.test, blur, bw.CvL, bw.CvLHeat, bw.abram,
    bw.diggle, bw.frac, bw.optim, bw.pcf, bw.ppl, bw.pplHeat,
    bw.relrisk, bw.scott, bw.scott.iso, bw.smoothppp, bw.stoyan,
    calc.DR, calc.NNIR, calc.SAVE, calc.SIR, calc.TSE, cbind.fv,
    cdf.test, cdf.test.ppp, censtimeCDFest, check.testfun, circdensity,
    circticks, clarkevans, clarkevans.test, clarkevansCalc, clusterset,
    collapse.anylist, collapse.fv, compatible.fasp, compatible.fv,
    compatible.rat, compileCDF, compileK, compilepcf, conform.ratfv,
    contour.ssf, cor.im, cov.im, cutoff2Dkernel, dclf.progress,
    dclf.sigtrace, dclf.test, density.ppp, density.ppplist,
    density.psp, density.splitppp, densityAdaptiveKernel,
    densityAdaptiveKernel.ppp, densityHeat, densityHeat.ppp,
    densityVoronoi, densityVoronoi.ppp, densitycrossEngine, densityfun,
    densityfun.ppp, densitypointsEngine, deriv.fv, dg.envelope,
    dg.progress, dg.sigtrace, dg.test, digestCovariates,
    digital.volume, dim.fasp, dimhat, dimnames.fasp, dimnames<-.fasp,
    distcdf, distributecbind, dkernel, domain.quadrattest, edge.Ripley,
    edge.Trans, envelope, envelope.envelope, envelope.hasenvelope,
    envelope.matrix, envelope.pp3, envelope.ppp, envelopeArray,
    envelopeEngine, envelopeProgressData, envelopeTest, eval.fasp,
    eval.fv, evalCovar, evaluate2Dkernel, extractAtomicQtests,
    f3Cengine, f3engine, fasp, findbestlegendpos, findcbind, flatfname,
    formula.fv, formula<-, formula<-.fv, fryplot, frypoints, fv,
    fvexprmap, fvlabelmap, fvlabels, fvlabels<-, fvlegend, fvnames,
    fvnames<-, g3Cengine, g3engine, getSumFun, good.correction.K,
    harmonise.fv, harmonize.fv, hasenvelope, hopskel, hopskel.test,
    hotbox, idw, image.ssf, implemented.for.K, increment.fv,
    integral.ssf, is.atomicQtest, is.scov, k3engine, kaplan.meier,
    kernel.factor, kernel.moment, kernel.squint, km.rs, km.rs.opt,
    laslett, localK, localKcross, localKcross.inhom, localKdot,
    localKengine, localKinhom, localKmultiEngine, localL, localLcross,
    localLcross.inhom, localLdot, localLinhom, localpcf,
    localpcfengine, localpcfinhom, localpcfmatrix, lohboot,
    lookup2DkernelInfo, mad.progress, mad.sigtrace, mad.test,
    makefvlabel, markconnect, markcorr, markcorrint, markcrosscorr,
    markmarkscatter, markmean, marks.ssf, marks<-.ssf, marktable,
    markvar, markvario, maskLaslett, match.kernel, match2DkernelName,
    max.fv, max.ssf, mctest.progress, mctest.sigtrace,
    mctestSigtraceEngine, meanlistfv, min.fv, min.ssf, miplot,
    names<-.fv, nearest.neighbour, nnclean, nnclean.pp3, nnclean.ppp,
    nncleanEngine, nncorr, nndensity, nndensity.ppp, nnmean, nnorient,
    nnvario, pairMean, pairorient, pairs.im, pairs.listof,
    pairs.solist, panel.contour, panel.histogram, panel.image, pcf,
    pcf.fasp, pcf.fv, pcf.ppp, pcf3engine, pcf3est, pcfcross,
    pcfcross.inhom, pcfdot, pcfdot.inhom, pcfinhom, pcfmulti,
    pcfmulti.inhom, pkernel, plot.bermantest, plot.bw.frac,
    plot.bw.optim, plot.cdftest, plot.envelope, plot.fasp, plot.fv,
    plot.laslett, plot.localpcfmatrix, plot.plotpairsim,
    plot.quadrattest, plot.rho2hat, plot.rhohat, plot.scan.test,
    plot.spatialcdf, plot.ssf, plot.studpermutest, polyLaslett, pool,
    pool.anylist, pool.envelope, pool.fasp, pool.fv, pool.quadrattest,
    pool.rat, predict.rho2hat, predict.rhohat, prefixfv,
    print.Smoothfun, print.bw.frac, print.bw.optim, print.densityfun,
    print.envelope, print.fasp, print.fv, print.fvfun,
    print.hasenvelope, print.laslett, print.localpcfmatrix,
    print.plotpairsim, print.quadrattest, print.rat, print.rho2hat,
    print.rhohat, print.ssf, print.summary.ssf, qkernel, quadrat.test,
    quadrat.test.ppp, quadrat.test.quadratcount, quadrat.test.splitppp,
    quadrat.testEngine, quantile.density, range.fv, range.ssf, rat,
    ratfv, rebadge.as.crossfun, rebadge.as.dotfun, rebadge.fv,
    rebadgeLabels, reconcile.fv, rectcontact, reduced.sample,
    reload.or.compute, relrisk, relrisk.ppp, rename.fv,
    resolve.2D.kernel, resolve.foxall.window, resolve.lambda,
    resolveEinfo, rho2hat, rhohat, rhohat.ppp, rhohat.quad, rhohatCalc,
    rhohatEngine, rkernel, rmax.Rigid, rmax.Ripley, rmax.Trans,
    rmax.rule, roc, roc.ppp, rocData, rocModel, rose, rose.default,
    rose.density, rose.fv, rose.histogram, roseContinuous, rotmean,
    scan.test, scanBinomLRTS, scanLRTS, scanPoisLRTS, scanmeasure,
    scanmeasure.im, scanmeasure.ppp, sdr, sdr.ppp, sdrPredict,
    second.moment.calc, second.moment.engine, segregation.test,
    segregation.test.ppp, sewpcf, sewsmod, sharpen, sharpen.ppp,
    shift.quadrattest, simulate.rhohat, simulrecipe, smoothcrossEngine,
    smoothpointsEngine, spatcov, spatialCDFframe, spatialCDFtest,
    spatialCDFtestCalc, spatialcdf, sphere.volume, ssf, stieltjes,
    stienen, stienenSet, studpermu.test, subspaceDistance,
    summary.envelope, summary.ssf, thresholdCI, thresholdSelect,
    transect.im, tweak.fv.entry, tweak.ratfv.entry, twostage.envelope,
    twostage.test, unmark.ssf, validate.angles, validate.weights,
    validate2Dkernel, vanilla.fv, varblock, weightedclosepairs,
    which.max.im, with.fv, with.ssf

Loading required package: spatstat.model
spatstat.model 3.0-2

Attaching package: 'spatstat.model'

The following objects are masked from 'package:spatstat.core':

    AIC.dppm, AIC.kppm, AIC.mppm, AIC.ppm, AreaInter, BadGey, Concom,
    DPPSaddle, DPPSaddlePairwise, DiggleGatesStibbard, DiggleGratton,
    Fiksel, GLMpredict, Gcom, Geyer, Gres, Hardcore, HierHard,
    HierStrauss, HierStraussHard, Hybrid, Kcom, Kmodel,
    Kmodel.detpointprocfamily, Kmodel.dppm, Kmodel.kppm, Kmodel.ppm,
    Kmodel.slrm, Kmodel.zclustermodel, Kpcf.kppm, Kres, LambertW,
    LennardJones, LurkEngine, Mayer, MultiHard, MultiStrauss,
    MultiStraussHard, Ops.msr, Ord, OrdThresh, PPMmodelmatrix,
    PairPiece, PairPotentialType, Pairwise, Penttinen, PoisSaddle,
    PoisSaddleArea, PoisSaddleGeyer, PoisSaddlePairwise, Poisson,
    SaddleApprox, SatPiece, Saturated, Smooth.influence.ppm,
    Smooth.leverage.ppm, Smooth.msr, Softcore, Strauss, StraussHard,
    Triplets, Window.dppm, Window.influence.ppm, Window.kppm,
    Window.leverage.ppm, Window.msr, Window.ppm, Window.slrm,
    [.influence.ppm, [.leverage.ppm, [.msr, accumulateStatus,
    active.interactions, adaptcoef, addvar, affine.msr, anova.mppm,
    anova.ppm, anova.slrm, areadelta2, as.function.leverage.ppm,
    as.fv.dppm, as.fv.kppm, as.fv.minconfit, as.im.leverage.ppm,
    as.interact, as.interact.fii, as.interact.interact,
    as.interact.ppm, as.interact.zgibbsmodel, as.isf,
    as.isf.zgibbsmodel, as.layered.msr, as.owin.dppm,
    as.owin.influence.ppm, as.owin.kppm, as.owin.leverage.ppm,
    as.owin.msr, as.owin.ppm, as.owin.slrm, as.ppm, as.ppm.dppm,
    as.ppm.kppm, as.ppm.ppm, as.ppm.profilepl, as.ppm.rppm,
    as.ppp.influence.ppm, auc.kppm, auc.ppm, auc.slrm, augment.msr, bc,
    bc.ppm, berman.test.ppm, bigvaluerule, blankcoefnames, bt.frame,
    cannot.update, cauchy.estK, cauchy.estpcf, cdf.test.mppm,
    cdf.test.ppm, cdf.test.slrm, check.separable, closepaircounts,
    clusterfield.kppm, clusterfit, clusterkernel.kppm,
    clusterradius.kppm, clusterradius.zclustermodel, coef.dppm,
    coef.fii, coef.kppm, coef.mppm, coef.ppm, coef.slrm,
    coef.summary.fii, coef.summary.kppm, coef.summary.ppm,
    coef.summary.slrm, coef.vblogit, coef<-.fii, compareFit,
    condSimCox, contour.leverage.ppm, contour.objsurf, crosspaircounts,
    damaged.ppm, data.mppm, data.ppm, deltasuffstat,
    detpointprocfamilyfun, deviance.ppm, deviance.slrm, dfbetas.ppm,
    dfbetas.ppmInfluence, dfbetas.slrm, dffit, dffit.ppm, dffit.slrm,
    diagnose.ppm, diagnose.ppm.engine, dim.detpointprocfamily, dim.msr,
    dimnames.msr, doMultiStraussHard, domain.dppm,
    domain.influence.ppm, domain.kppm, domain.leverage.ppm, domain.msr,
    domain.ppm, domain.slrm, dppBessel, dppCauchy, dppDpcf, dppGauss,
    dppMatern, dppPowerExp, dppapproxkernel, dppapproxpcf, dppeigen,
    dppkernel, dppm, dppmFixAlgorithm, dppmFixIntensity, dppparbounds,
    dppspecden, dppspecdenrange, dummify, dummy.ppm, eem, eem.ppm,
    eem.slrm, effectfun, emend, emend.ppm, emend.slrm, envelope.kppm,
    envelope.ppm, envelope.slrm, equalpairs, evalInterEngine,
    evalInteraction, evalPairPotential, evalPairwiseTerm,
    exactMPLEstrauss, expandDot, extractAIC.dppm, extractAIC.kppm,
    extractAIC.mppm, extractAIC.ppm, extractAIC.slrm, fakefii,
    family.hackglmmPQL, family.vblogit, fii, fill.coefs, findCovariate,
    fitin, fitin.ppm, fitin.profilepl, fitted.dppm, fitted.kppm,
    fitted.mppm, fitted.ppm, fitted.rppm, fitted.slrm, fixef.mppm,
    flipxy.msr, forbid.logi, formula.dppm, formula.hackglmmPQL,
    formula.kppm, formula.ppm, formula.slrm, getCall.mppm, getdataname,
    getglmdata, getglmfit, getglmsubset, getppmOriginalCovariates,
    getppmdatasubset, geyercounts, geyerdelta2, hackglmmPQL,
    hardcoredist, hardcoredist.fii, hardcoredist.ppm, harmonic,
    harmonise.msr, has.offset, has.offset.term, hasglmfit,
    hierarchicalordering, hiermat, hierpair.family, ho.engine,
    hybrid.family, ic, ic.kppm, ic.ppm, illegal.iformula,
    image.objsurf, impliedcoefficients, impliedpresence, improve.kppm,
    influence.ppm, influence.ppmInfluence, influence.slrm,
    inforder.family, instantiate.interact, integral.influence.ppm,
    integral.leverage.ppm, integral.msr, intensity.detpointprocfamily,
    intensity.dppm, intensity.ppm, intensity.slrm,
    intensity.zclustermodel, intensity.zgibbsmodel,
    interactionfamilyname, interactionorder, interactionorder.fii,
    interactionorder.interact, interactionorder.isf,
    interactionorder.ppm, interactionorder.zgibbsmodel, intermaker,
    ippm, is.dppm, is.expandable.ppm, is.hybrid, is.hybrid.interact,
    is.hybrid.ppm, is.interact, is.kppm, is.lppm, is.marked.mppm,
    is.marked.msr, is.marked.ppm, is.marked.slrm, is.mppm,
    is.multitype.mppm, is.multitype.msr, is.multitype.ppm,
    is.multitype.slrm, is.poisson.interact, is.poisson.kppm,
    is.poisson.mppm, is.poisson.ppm, is.poisson.slrm,
    is.poisson.zgibbsmodel, is.ppm, is.slrm,
    is.stationary.detpointprocfamily, is.stationary.dppm,
    is.stationary.kppm, is.stationary.ppm, is.stationary.slrm,
    is.stationary.zgibbsmodel, killinteraction, kppm, kppm.formula,
    kppm.ppp, kppm.quad, kppmCLadap, kppmComLik, kppmMinCon,
    kppmPalmLik, labels.dppm, labels.kppm, labels.ppm, labels.slrm,
    leverage, leverage.ppm, leverage.ppmInfluence, leverage.slrm,
    lgcp.estK, lgcp.estpcf, logLik.dppm, logLik.kppm, logLik.mppm,
    logLik.ppm, logLik.slrm, logLik.vblogit, logi.engine, lurking,
    lurking.mppm, lurking.ppm, lurking.ppp, mapInterVars,
    matclust.estK, matclust.estpcf, mean.leverage.ppm,
    measureContinuous, measureDiscrete, measureNegative,
    measurePositive, measureVariation, mincontrast, model.covariates,
    model.depends, model.frame.dppm, model.frame.kppm, model.frame.ppm,
    model.frame.slrm, model.images, model.images.dppm,
    model.images.kppm, model.images.ppm, model.images.slrm,
    model.is.additive, model.matrix.dppm, model.matrix.ippm,
    model.matrix.kppm, model.matrix.mppm, model.matrix.ppm,
    model.matrix.slrm, model.se.image, modelFrameGam, mpl.engine,
    mpl.get.covariates, mpl.prepare, mpl.usable, mppm, msr, newformula,
    newstyle.coeff.handling, nndcumfun, no.trend.ppm, nobs.dppm,
    nobs.kppm, nobs.mppm, nobs.ppm, npfun, objsurf, objsurf.dppm,
    objsurf.kppm, objsurf.minconfit, objsurfEngine, optimConverged,
    optimNsteps, optimStatus, ord.family, outdated.interact,
    oversize.quad, pairsat.family, pairwise.family, panel.contour,
    panel.histogram, panel.image, parameters, parameters.dppm,
    parameters.fii, parameters.interact, parameters.kppm,
    parameters.ppm, parameters.profilepl, parameters.slrm, parres,
    partialModelMatrix, pcfmodel, pcfmodel.detpointprocfamily,
    pcfmodel.dppm, pcfmodel.kppm, pcfmodel.ppm, pcfmodel.slrm,
    pcfmodel.zclustermodel, persp.leverage.ppm, persp.objsurf,
    plot.addvar, plot.diagppm, plot.dppm, plot.fii, plot.influence.ppm,
    plot.kppm, plot.leverage.ppm, plot.lurk, plot.minconfit, plot.mppm,
    plot.msr, plot.objsurf, plot.parres, plot.plotppm, plot.ppm,
    plot.profilepl, plot.qqppm, plot.rppm, plot.slrm, ploterodeimage,
    ploterodewin, polynom, ppm, ppm.default, ppm.formula, ppm.ppp,
    ppm.quad, ppmCovariates, ppmDerivatives, ppmInfluence,
    ppmInfluenceEngine, predict.dppm, predict.kppm, predict.mppm,
    predict.ppm, predict.profilepl, predict.rppm, predict.slrm,
    predict.vblogit, predict.zclustermodel, print.addvar,
    print.bt.frame, print.detpointprocfamily,
    print.detpointprocfamilyfun, print.diagppm, print.dppm, print.fii,
    print.hierarchicalordering, print.influence.ppm, print.interact,
    print.intermaker, print.isf, print.kppm, print.leverage.ppm,
    print.lurk, print.minconfit, print.mppm, print.msr, print.objsurf,
    print.parres, print.plotppm, print.ppm, print.profilepl,
    print.qqppm, print.rppm, print.slrm, print.summary.dppm,
    print.summary.fii, print.summary.kppm, print.summary.mppm,
    print.summary.objsurf, print.summary.ppm, print.summary.slrm,
    print.vblogit, print.zclustermodel, print.zgibbsmodel, printStatus,
    printStatusList, profilepl, project.ppm, prune.rppm, pseudoR2,
    pseudoR2.ppm, pseudoR2.slrm, psib, psib.kppm, psst, psstA, psstG,
    qqplot.ppm, quad.mppm, quad.ppm, quadBlockSizes, quadrat.test.mppm,
    quadrat.test.ppm, quadrat.test.slrm, ranef.mppm, rdpp,
    reach.detpointprocfamily, reach.dppm, reach.fii, reach.interact,
    reach.kppm, reach.ppm, reach.slrm, reach.zclustermodel,
    reduceformula, reincarnate.interact, relrisk.ppm, repul,
    repul.dppm, rescale.msr, resid1panel, resid1plot, resid4plot,
    residuals.dppm, residuals.kppm, residuals.mppm, residuals.ppm,
    residuals.slrm, response, response.dppm, response.glm,
    response.kppm, response.lm, response.mppm, response.ppm,
    response.slrm, rex, rhohat.ppm, rhohat.slrm, rmh.ppm, rmhmodel.ppm,
    roc.kppm, roc.ppm, roc.slrm, rotate.msr, rppm, safeFiniteValue,
    safePositiveValue, scalardilate.msr, shift.influence.ppm,
    shift.leverage.ppm, shift.msr, signalStatus,
    simulate.detpointprocfamily, simulate.dppm, simulate.kppm,
    simulate.mppm, simulate.ppm, simulate.profilepl, simulate.slrm,
    slr.prepare, slrAssemblePixelData, slrm, slrmInfluence,
    sp.foundclass, sp.foundclasses, spatstatDPPModelInfo, split.msr,
    splitHybridInteraction, strausscounts, stripGLMM, subfits,
    subfits.new, subfits.old, suffloc, suffstat, suffstat.generic,
    suffstat.poisson, summary.dppm, summary.fii, summary.kppm,
    summary.mppm, summary.msr, summary.objsurf, summary.ppm,
    summary.profilepl, summary.slrm, summary.vblogit, terms.dppm,
    terms.kppm, terms.mppm, terms.ppm, terms.slrm, thomas.estK,
    thomas.estpcf, totalVariation, triplet.family, tweak.coefs,
    unitname.dppm, unitname.kppm, unitname.minconfit, unitname.msr,
    unitname.ppm, unitname.slrm, unitname<-.dppm, unitname<-.kppm,
    unitname<-.minconfit, unitname<-.msr, unitname<-.ppm,
    unitname<-.slrm, unstack.msr, update.detpointprocfamily,
    update.interact, update.ippm, update.kppm, update.msr, update.ppm,
    update.slrm, valid, valid.detpointprocfamily, valid.ppm,
    valid.slrm, varcount, varcountEngine, vargamma.estK,
    vargamma.estpcf, vcov.kppm, vcov.mppm, vcov.ppm, vcov.slrm,
    versionstring.interact, versionstring.ppm, windows.mppm, with.msr,
    zclustermodel, zgibbsmodel

spatstat.linnet 3.0-2

spatstat 2.3-4       (nickname: 'Watch this space') 
For an introduction to spatstat, type 'beginner' 

Loading required package: sp
Loading required package: gstat

Attaching package: 'gstat'

The following object is masked from 'package:spatstat.explore':

    idw

The following object is masked from 'package:spatstat.core':

    idw

Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.0      ✔ purrr   0.3.5 
✔ tibble  3.1.8      ✔ dplyr   1.0.10
✔ tidyr   1.2.1      ✔ stringr 1.4.1 
✔ readr   2.1.3      ✔ forcats 0.5.2 
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::collapse() masks nlme::collapse()
✖ dplyr::filter()   masks stats::filter()
✖ dplyr::lag()      masks stats::lag()
Loading required package: geosphere

Attaching package: 'geosphere'

The following object is masked from 'package:spatstat.geom':

    perimeter

Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.11.0-CAPI-1.17.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-1 
 Polygon checking: TRUE 

Loading required package: dynamAedes
Loading required package: raster

Attaching package: 'raster'

The following object is masked from 'package:dplyr':

    select

The following object is masked from 'package:nlme':

    getData

Warning in max(cells.coords[, 2]) :
  no non-missing arguments to max; returning -Inf

 ### Model without dispersal ### 

starting worker pid=3605088 on localhost:11442 at 20:30:52.345
##########################################
## Life cycle iterations have begun... ##
##########################################
Loading required package: dynamAedes
Loading required package: raster
Loading required package: sp
loaded dynamAedes and set parent environment

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  |%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%| 100%


########################################
## Iterations concluded.              ##
########################################



Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
--- finished re-building ‘dynamAedes_punctual.Rmd’

--- re-building ‘dynamAedes_regional.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
Loading required package: spatstat.random
spatstat.random 3.0-1
Loading required package: spatstat.core
Loading required package: nlme
Loading required package: rpart
spatstat.core 2.4-4
Loading required package: spatstat.linnet
Loading required package: spatstat.explore
spatstat.explore 3.0-3

Attaching package: 'spatstat.explore'

The following objects are masked from 'package:spatstat.core':

    $<-.fv, BartCalc, CDF, CDF.density, CVforPCF, CressieReadName,
    CressieReadStatistic, CressieReadSymbol, Deviation, Emark,
    ExpSmoothLog, F3est, Fest, Fhazard, Finhom, FmultiInhom,
    FormatFaspFormulae, G3est, Gcross, Gdot, Gest, Gfox, Ginhom,
    Gmulti, GmultiInhom, Hest, Iest, Jcross, Jdot, Jest, Jfox, Jinhom,
    Jmulti, K3est, Kborder.engine, Kcross, Kcross.inhom, Kdot,
    Kdot.inhom, Kest, Kest.fft, Kinhom, Kmark, Kmeasure, Kmulti,
    Kmulti.inhom, Knone.engine, Kount, Krect.engine, Kscaled, Ksector,
    Kwtsum, Lcross, Lcross.inhom, Ldot, Ldot.inhom, Lest, Linhom,
    Lscaled, PPversion, QQversion, RelevantDeviation, Smooth,
    Smooth.fv, Smooth.im, Smooth.ppp, Smooth.solist, Smooth.ssf,
    Smoothfun, Smoothfun.ppp, Tstat, Vmark, Window.quadrattest,
    X2testEngine, [.fasp, [.fv, [.localpcfmatrix, [.rat, [.ssf, [<-.fv,
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    apply.ssf, as.data.frame.bw.optim, as.data.frame.envelope,
    as.data.frame.fv, as.function.fv, as.function.rhohat,
    as.function.ssf, as.fv, as.fv.bw.optim, as.fv.data.frame,
    as.fv.fasp, as.fv.fv, as.fv.matrix, as.im.scan.test, as.im.ssf,
    as.owin.quadrattest, as.ppp.ssf, assemble.plot.objects, auc,
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    bits.envelope, bits.test, blur, bw.CvL, bw.CvLHeat, bw.abram,
    bw.diggle, bw.frac, bw.optim, bw.pcf, bw.ppl, bw.pplHeat,
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    collapse.anylist, collapse.fv, compatible.fasp, compatible.fv,
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    contour.ssf, cor.im, cov.im, cutoff2Dkernel, dclf.progress,
    dclf.sigtrace, dclf.test, density.ppp, density.ppplist,
    density.psp, density.splitppp, densityAdaptiveKernel,
    densityAdaptiveKernel.ppp, densityHeat, densityHeat.ppp,
    densityVoronoi, densityVoronoi.ppp, densitycrossEngine, densityfun,
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    dg.progress, dg.sigtrace, dg.test, digestCovariates,
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    eval.fv, evalCovar, evaluate2Dkernel, extractAtomicQtests,
    f3Cengine, f3engine, fasp, findbestlegendpos, findcbind, flatfname,
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    fvnames<-, g3Cengine, g3engine, getSumFun, good.correction.K,
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    quadrat.test.ppp, quadrat.test.quadratcount, quadrat.test.splitppp,
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    rebadgeLabels, reconcile.fv, rectcontact, reduced.sample,
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    resolveEinfo, rho2hat, rhohat, rhohat.ppp, rhohat.quad, rhohatCalc,
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    rmax.rule, roc, roc.ppp, rocData, rocModel, rose, rose.default,
    rose.density, rose.fv, rose.histogram, roseContinuous, rotmean,
    scan.test, scanBinomLRTS, scanLRTS, scanPoisLRTS, scanmeasure,
    scanmeasure.im, scanmeasure.ppp, sdr, sdr.ppp, sdrPredict,
    second.moment.calc, second.moment.engine, segregation.test,
    segregation.test.ppp, sewpcf, sewsmod, sharpen, sharpen.ppp,
    shift.quadrattest, simulate.rhohat, simulrecipe, smoothcrossEngine,
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    twostage.test, unmark.ssf, validate.angles, validate.weights,
    validate2Dkernel, vanilla.fv, varblock, weightedclosepairs,
    which.max.im, with.fv, with.ssf

Loading required package: spatstat.model
spatstat.model 3.0-2

Attaching package: 'spatstat.model'

The following objects are masked from 'package:spatstat.core':

    AIC.dppm, AIC.kppm, AIC.mppm, AIC.ppm, AreaInter, BadGey, Concom,
    DPPSaddle, DPPSaddlePairwise, DiggleGatesStibbard, DiggleGratton,
    Fiksel, GLMpredict, Gcom, Geyer, Gres, Hardcore, HierHard,
    HierStrauss, HierStraussHard, Hybrid, Kcom, Kmodel,
    Kmodel.detpointprocfamily, Kmodel.dppm, Kmodel.kppm, Kmodel.ppm,
    Kmodel.slrm, Kmodel.zclustermodel, Kpcf.kppm, Kres, LambertW,
    LennardJones, LurkEngine, Mayer, MultiHard, MultiStrauss,
    MultiStraussHard, Ops.msr, Ord, OrdThresh, PPMmodelmatrix,
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    Triplets, Window.dppm, Window.influence.ppm, Window.kppm,
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    coef.fii, coef.kppm, coef.mppm, coef.ppm, coef.slrm,
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    dppkernel, dppm, dppmFixAlgorithm, dppmFixIntensity, dppparbounds,
    dppspecden, dppspecdenrange, dummify, dummy.ppm, eem, eem.ppm,
    eem.slrm, effectfun, emend, emend.ppm, emend.slrm, envelope.kppm,
    envelope.ppm, envelope.slrm, equalpairs, evalInterEngine,
    evalInteraction, evalPairPotential, evalPairwiseTerm,
    exactMPLEstrauss, expandDot, extractAIC.dppm, extractAIC.kppm,
    extractAIC.mppm, extractAIC.ppm, extractAIC.slrm, fakefii,
    family.hackglmmPQL, family.vblogit, fii, fill.coefs, findCovariate,
    fitin, fitin.ppm, fitin.profilepl, fitted.dppm, fitted.kppm,
    fitted.mppm, fitted.ppm, fitted.rppm, fitted.slrm, fixef.mppm,
    flipxy.msr, forbid.logi, formula.dppm, formula.hackglmmPQL,
    formula.kppm, formula.ppm, formula.slrm, getCall.mppm, getdataname,
    getglmdata, getglmfit, getglmsubset, getppmOriginalCovariates,
    getppmdatasubset, geyercounts, geyerdelta2, hackglmmPQL,
    hardcoredist, hardcoredist.fii, hardcoredist.ppm, harmonic,
    harmonise.msr, has.offset, has.offset.term, hasglmfit,
    hierarchicalordering, hiermat, hierpair.family, ho.engine,
    hybrid.family, ic, ic.kppm, ic.ppm, illegal.iformula,
    image.objsurf, impliedcoefficients, impliedpresence, improve.kppm,
    influence.ppm, influence.ppmInfluence, influence.slrm,
    inforder.family, instantiate.interact, integral.influence.ppm,
    integral.leverage.ppm, integral.msr, intensity.detpointprocfamily,
    intensity.dppm, intensity.ppm, intensity.slrm,
    intensity.zclustermodel, intensity.zgibbsmodel,
    interactionfamilyname, interactionorder, interactionorder.fii,
    interactionorder.interact, interactionorder.isf,
    interactionorder.ppm, interactionorder.zgibbsmodel, intermaker,
    ippm, is.dppm, is.expandable.ppm, is.hybrid, is.hybrid.interact,
    is.hybrid.ppm, is.interact, is.kppm, is.lppm, is.marked.mppm,
    is.marked.msr, is.marked.ppm, is.marked.slrm, is.mppm,
    is.multitype.mppm, is.multitype.msr, is.multitype.ppm,
    is.multitype.slrm, is.poisson.interact, is.poisson.kppm,
    is.poisson.mppm, is.poisson.ppm, is.poisson.slrm,
    is.poisson.zgibbsmodel, is.ppm, is.slrm,
    is.stationary.detpointprocfamily, is.stationary.dppm,
    is.stationary.kppm, is.stationary.ppm, is.stationary.slrm,
    is.stationary.zgibbsmodel, killinteraction, kppm, kppm.formula,
    kppm.ppp, kppm.quad, kppmCLadap, kppmComLik, kppmMinCon,
    kppmPalmLik, labels.dppm, labels.kppm, labels.ppm, labels.slrm,
    leverage, leverage.ppm, leverage.ppmInfluence, leverage.slrm,
    lgcp.estK, lgcp.estpcf, logLik.dppm, logLik.kppm, logLik.mppm,
    logLik.ppm, logLik.slrm, logLik.vblogit, logi.engine, lurking,
    lurking.mppm, lurking.ppm, lurking.ppp, mapInterVars,
    matclust.estK, matclust.estpcf, mean.leverage.ppm,
    measureContinuous, measureDiscrete, measureNegative,
    measurePositive, measureVariation, mincontrast, model.covariates,
    model.depends, model.frame.dppm, model.frame.kppm, model.frame.ppm,
    model.frame.slrm, model.images, model.images.dppm,
    model.images.kppm, model.images.ppm, model.images.slrm,
    model.is.additive, model.matrix.dppm, model.matrix.ippm,
    model.matrix.kppm, model.matrix.mppm, model.matrix.ppm,
    model.matrix.slrm, model.se.image, modelFrameGam, mpl.engine,
    mpl.get.covariates, mpl.prepare, mpl.usable, mppm, msr, newformula,
    newstyle.coeff.handling, nndcumfun, no.trend.ppm, nobs.dppm,
    nobs.kppm, nobs.mppm, nobs.ppm, npfun, objsurf, objsurf.dppm,
    objsurf.kppm, objsurf.minconfit, objsurfEngine, optimConverged,
    optimNsteps, optimStatus, ord.family, outdated.interact,
    oversize.quad, pairsat.family, pairwise.family, panel.contour,
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    parameters.fii, parameters.interact, parameters.kppm,
    parameters.ppm, parameters.profilepl, parameters.slrm, parres,
    partialModelMatrix, pcfmodel, pcfmodel.detpointprocfamily,
    pcfmodel.dppm, pcfmodel.kppm, pcfmodel.ppm, pcfmodel.slrm,
    pcfmodel.zclustermodel, persp.leverage.ppm, persp.objsurf,
    plot.addvar, plot.diagppm, plot.dppm, plot.fii, plot.influence.ppm,
    plot.kppm, plot.leverage.ppm, plot.lurk, plot.minconfit, plot.mppm,
    plot.msr, plot.objsurf, plot.parres, plot.plotppm, plot.ppm,
    plot.profilepl, plot.qqppm, plot.rppm, plot.slrm, ploterodeimage,
    ploterodewin, polynom, ppm, ppm.default, ppm.formula, ppm.ppp,
    ppm.quad, ppmCovariates, ppmDerivatives, ppmInfluence,
    ppmInfluenceEngine, predict.dppm, predict.kppm, predict.mppm,
    predict.ppm, predict.profilepl, predict.rppm, predict.slrm,
    predict.vblogit, predict.zclustermodel, print.addvar,
    print.bt.frame, print.detpointprocfamily,
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    print.hierarchicalordering, print.influence.ppm, print.interact,
    print.intermaker, print.isf, print.kppm, print.leverage.ppm,
    print.lurk, print.minconfit, print.mppm, print.msr, print.objsurf,
    print.parres, print.plotppm, print.ppm, print.profilepl,
    print.qqppm, print.rppm, print.slrm, print.summary.dppm,
    print.summary.fii, print.summary.kppm, print.summary.mppm,
    print.summary.objsurf, print.summary.ppm, print.summary.slrm,
    print.vblogit, print.zclustermodel, print.zgibbsmodel, printStatus,
    printStatusList, profilepl, project.ppm, prune.rppm, pseudoR2,
    pseudoR2.ppm, pseudoR2.slrm, psib, psib.kppm, psst, psstA, psstG,
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    response.kppm, response.lm, response.mppm, response.ppm,
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    shift.leverage.ppm, shift.msr, signalStatus,
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    sp.foundclass, sp.foundclasses, spatstatDPPModelInfo, split.msr,
    splitHybridInteraction, strausscounts, stripGLMM, subfits,
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    terms.kppm, terms.mppm, terms.ppm, terms.slrm, thomas.estK,
    thomas.estpcf, totalVariation, triplet.family, tweak.coefs,
    unitname.dppm, unitname.kppm, unitname.minconfit, unitname.msr,
    unitname.ppm, unitname.slrm, unitname<-.dppm, unitname<-.kppm,
    unitname<-.minconfit, unitname<-.msr, unitname<-.ppm,
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    versionstring.interact, versionstring.ppm, windows.mppm, with.msr,
    zclustermodel, zgibbsmodel

spatstat.linnet 3.0-2

spatstat 2.3-4       (nickname: 'Watch this space') 
For an introduction to spatstat, type 'beginner' 

Loading required package: sp
Loading required package: gstat

Attaching package: 'gstat'

The following object is masked from 'package:spatstat.explore':

    idw

The following object is masked from 'package:spatstat.core':

    idw

Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.0      ✔ purrr   0.3.5 
✔ tibble  3.1.8      ✔ dplyr   1.0.10
✔ tidyr   1.2.1      ✔ stringr 1.4.1 
✔ readr   2.1.3      ✔ forcats 0.5.2 
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::collapse() masks nlme::collapse()
✖ dplyr::filter()   masks stats::filter()
✖ dplyr::lag()      masks stats::lag()
Loading required package: geosphere

Attaching package: 'geosphere'

The following object is masked from 'package:spatstat.geom':

    perimeter

Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.11.0-CAPI-1.17.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-1 
 Polygon checking: TRUE 

Loading required package: dynamAedes
Loading required package: raster

Attaching package: 'raster'

The following object is masked from 'package:dplyr':

    select

The following object is masked from 'package:nlme':

    getData

inside
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Error: processing vignette ‘dynamAedes_regional.Rmd’ failed with diagnostics:
error in evaluating the argument ‘obj’ in selecting a method for function ‘coordinates’: package rgdal is required for spTransform methods
--- failed re-building ‘dynamAedes_regional.Rmd’

SUMMARY: processing the following file failed:
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Error: Vignette re-building failed.
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