Found the following significant warnings:
  libphylocom/phylocom.h:104:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:105:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:106:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:107:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:108:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:109:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:110:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:112:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:113:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:114:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:115:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:116:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:117:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:118:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:120:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:121:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:122:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:123:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:124:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:125:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:126:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:127:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:128:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:129:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:130:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:131:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:132:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:133:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:134:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:135:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:136:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:137:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:138:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:139:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:140:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:141:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:142:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:143:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:144:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:145:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:146:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:147:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:148:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:149:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:150:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:151:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:152:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:153:8: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:154:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:155:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:156:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:157:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:158:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:159:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:162:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:164:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:165:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:166:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:167:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:168:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:169:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:170:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:173:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:176:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:177:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:178:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:181:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:182:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:183:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:186:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:187:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:188:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:189:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:190:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:191:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:192:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:193:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:194:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:195:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:198:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:199:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:202:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:203:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:204:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:207:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:208:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:211:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:212:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:213:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:214:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:215:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:216:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:217:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:218:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:219:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:220:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:221:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:222:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:223:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:224:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:225:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:226:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:227:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:170:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:150:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:139:14: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:151:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:149:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/io.c:434:16: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:148:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/io.c:483:12: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/io.c:490:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:137:15: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/io.c:619:27: warning: passing arguments to 'whatnewline' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/io.c:629:17: warning: passing arguments to 'myfgets' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/io.c:679:17: warning: passing arguments to 'myfgets' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:152:15: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/io.c:783:27: warning: passing arguments to 'whatnewline' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/io.c:794:17: warning: passing arguments to 'myfgets' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/io.c:848:17: warning: passing arguments to 'myfgets' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:138:14: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/io.c:939:16: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:207:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:208:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:164:7: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:165:5: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/io.c:1180:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylocom.h:135:14: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:203:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/traits.c:307:22: warning: passing arguments to 'AttachPhyloToTraits' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/traits.c:379:11: warning: passing arguments to 'AgeNodes' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/traits.c:394:15: warning: passing arguments to 'RandArrayT' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/traits.c:1692:42: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/traits.c:1692:15: warning: passing arguments to 'WriteNexus' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:204:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:153:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:29:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:130:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:92:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:96:13: warning: passing arguments to 'DistMatrix' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:131:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:169:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:173:13: warning: passing arguments to 'DistMatrix' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:166:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:247:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:251:13: warning: passing arguments to 'DistMatrix' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:167:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:296:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:300:13: warning: passing arguments to 'DistMatrix' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:168:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:338:24: warning: passing arguments to 'ReadMeans' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:345:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:349:13: warning: passing arguments to 'DistMatrix' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:169:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:391:24: warning: passing arguments to 'ReadMeans' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:398:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:402:13: warning: passing arguments to 'DistMatrix' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:106:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:448:13: warning: passing arguments to 'DistMatrix' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:133:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:579:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:134:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:713:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:815:26: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:872:41: warning: passing arguments to 'RandomizeSampleTaxaShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:875:41: warning: passing arguments to 'RandomizeSampleTaxaShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:876:37: warning: passing arguments to 'PhylogenyAttachShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:941:11: warning: passing arguments to 'Sort' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:949:11: warning: passing arguments to 'Sort' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:957:11: warning: passing arguments to 'Sort' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:965:11: warning: passing arguments to 'Sort' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:973:11: warning: passing arguments to 'Sort' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:981:11: warning: passing arguments to 'Sort' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:122:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:104:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:1179:26: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:1196:31: warning: passing arguments to 'PhylogenyAttachShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:1276:43: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:1277:26: warning: passing arguments to 'ReadTraits' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comstruct.c:1276:15: warning: passing arguments to 'WriteNexus' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:136:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:182:14: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:181:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/fy2new.c:282:26: warning: passing arguments to 'downPar' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:183:7: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:155:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/bladj.c:41:27: warning: passing arguments to 'whatnewline' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/bladj.c:45:17: warning: passing arguments to 'myfgets' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/bladj.c:77:27: warning: passing arguments to 'LineOfSight' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/bladj.c:80:49: warning: passing arguments to 'LineOfSight' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/bladj.c:89:17: warning: passing arguments to 'SortAction' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/bladj.c:94:17: warning: passing arguments to 'Adjust' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/bladj.c:98:19: warning: passing arguments to 'FyOut' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/bladj.c:99:17: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:159:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:158:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:157:5: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:173:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comnode.c:222:12: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comnode.c:225:12: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:176:14: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:177:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/prune.c:284:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/prune.c:297:29: warning: passing arguments to 'PhylogenyAttachShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/prune.c:301:16: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:178:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/prune.c:315:22: warning: passing arguments to 'AttachSampleToPhylo' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/prune.c:322:16: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:156:5: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/prune.c:337:22: warning: passing arguments to 'SetNodePointers' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/prune.c:402:19: warning: passing arguments to 'FyOut' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/prune.c:403:17: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:162:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:46:23: warning: passing arguments to 'AttachSampleToTraits' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:67:22: warning: passing arguments to 'traitMetric' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:77:22: warning: passing arguments to 'IndependentSwap' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:79:16: warning: passing arguments to 'TrialSwap' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:93:30: warning: passing arguments to 'TraitsAttachShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:98:37: warning: passing arguments to 'RandomizeSampleTaxaShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:103:37: warning: passing arguments to 'RandomizeSampleTaxaShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:104:30: warning: passing arguments to 'TraitsAttachShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:109:26: warning: passing arguments to 'IndependentSwap' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:114:20: warning: passing arguments to 'TrialSwap' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/comtrait.c:139:26: warning: passing arguments to 'traitMetric' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:217:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:221:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:127:7: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:128:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/combase.c:48:13: warning: passing arguments to 'DistMatrix' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:129:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/combase.c:103:42: warning: passing arguments to 'DistToRootNode' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:107:28: warning: passing arguments to 'FindMRCA' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:108:42: warning: passing arguments to 'DistToRootNode' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:140:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:141:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:142:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:143:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:144:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:145:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:146:7: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:147:5: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:211:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/combase.c:392:31: warning: passing arguments to 'MeanDistance' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:393:41: warning: passing arguments to 'MeanMinimumDistance' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:404:22: warning: passing arguments to 'IndependentSwap' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:406:16: warning: passing arguments to 'TrialSwap' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:417:29: warning: passing arguments to 'PhylogenyAttachShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:424:33: warning: passing arguments to 'RandomizeSampleTaxaShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:434:33: warning: passing arguments to 'RandomizeSampleTaxaShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:435:29: warning: passing arguments to 'PhylogenyAttachShuffle' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:440:22: warning: passing arguments to 'IndependentSwap' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:445:16: warning: passing arguments to 'TrialSwap' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:458:29: warning: passing arguments to 'MeanDistance' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/combase.c:469:36: warning: passing arguments to 'MeanMinimumDistance' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:212:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:213:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:215:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:216:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:218:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:214:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:219:8: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:220:8: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:224:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:225:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:226:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylocom.h:227:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/main.c:171:28: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:188:36: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:190:16: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:191:16: warning: passing arguments to 'ReadTraits' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:189:17: warning: passing arguments to 'WriteNexus' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:199:36: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:200:33: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:200:57: warning: passing arguments to 'ReadTraits' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:200:10: warning: passing arguments to 'NAF' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:210:34: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:210:20: warning: passing arguments to 'NewickToNexus' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:216:30: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:216:15: warning: passing arguments to 'CleanPhy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:222:24: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:222:47: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:222:9: warning: passing arguments to 'PD' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:229:28: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:229:51: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:229:14: warning: passing arguments to 'Comnode' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:235:26: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:235:12: warning: passing arguments to 'Bladj' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:253:35: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:255:15: warning: passing arguments to 'AgeNodes' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:268:28: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:270:15: warning: passing arguments to 'AgeNodes' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:283:31: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:283:17: warning: passing arguments to 'SimpleDist' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:289:34: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:289:20: warning: passing arguments to 'PhyloVarCovar' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:296:42: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:296:65: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:296:28: warning: passing arguments to 'CommunityDistanceNull' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:304:44: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:304:67: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:304:30: warning: passing arguments to 'CommunityDistanceNNNull' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:311:28: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:311:51: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:311:14: warning: passing arguments to 'ComDist' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:317:30: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:317:53: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:317:16: warning: passing arguments to 'ComDistNN' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:323:22: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:323:45: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:323:15: warning: passing arguments to 'IComDist' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:324:24: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:324:47: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:324:17: warning: passing arguments to 'IComDistNN' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:330:22: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:330:45: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:330:15: warning: passing arguments to 'VComDist' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:331:24: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:331:47: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:331:17: warning: passing arguments to 'VComDistNN' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:337:20: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:337:13: warning: passing arguments to 'VMeans' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:344:21: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:344:44: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:344:14: warning: passing arguments to 'NodeSig' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:350:21: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:350:44: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:350:14: warning: passing arguments to 'NodeSig' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:363:26: warning: passing arguments to 'New2fy' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:363:49: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:363:19: warning: passing arguments to 'RaoDiversity' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:369:25: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:369:48: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:369:10: warning: passing arguments to 'Ltt' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:375:25: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:375:48: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:375:11: warning: passing arguments to 'LttR' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:394:25: warning: passing arguments to 'ReadTraits' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:394:51: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:394:14: warning: passing arguments to 'PSigRun' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:400:25: warning: passing arguments to 'ReadTraits' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:400:51: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:400:14: warning: passing arguments to 'PSigRun' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:406:25: warning: passing arguments to 'ReadTraits' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:406:51: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:406:14: warning: passing arguments to 'PSigRun' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:411:30: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:411:16: warning: passing arguments to 'RandPrune' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:417:32: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:417:55: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:417:18: warning: passing arguments to 'SamplePrune' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:424:30: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:424:52: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:424:16: warning: passing arguments to 'ComStruct' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:430:40: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:430:62: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:430:26: warning: passing arguments to 'OutputSwappedMatrix' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:436:32: warning: passing arguments to 'ReadSample' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:436:55: warning: passing arguments to 'ReadTraits' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/main.c:436:21: warning: passing arguments to 'ComTraitMetric' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecovolve.h:74:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:75:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:76:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:77:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:78:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:79:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:80:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:81:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:82:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:84:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecomain.c:148:22: warning: passing arguments to 'MakeChange' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:157:14: warning: passing arguments to 'Compete' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:171:25: warning: passing arguments to 'CharChange' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:194:27: warning: passing arguments to 'Speciate' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:205:26: warning: passing arguments to 'Extinct' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:238:18: warning: passing arguments to 'Extinct' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecovolve.h:74:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:368:9: warning: passing arguments to 'Output' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecovolve.h:76:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/ecovolve.h:78:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/ecovolve.h:75:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:455:9: warning: passing arguments to 'Output' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecovolve.h:77:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:471:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecomain.c:523:36: warning: passing arguments to 'Prune' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:523:30: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:524:17: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:529:51: warning: passing arguments to 'Prune' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:529:45: warning: passing arguments to 'Balance' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:538:51: warning: passing arguments to 'Prune' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:538:45: warning: passing arguments to 'Balance' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/ecovolve.h:82:14: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/ecomain.c:595:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecomain.c:651:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/ecovolve.h:84:7: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:47:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libphylocom/phylomatic.c:124:20: warning: passing arguments to 'ReadPhylogeny' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:125:15: warning: passing arguments to 'ReadTaxa' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:128:11: warning: passing arguments to 'AgeNodes' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:268:25: warning: passing arguments to 'Prune' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:268:19: warning: passing arguments to 'FyOut' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:269:23: warning: passing arguments to 'Prune' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:269:17: warning: passing arguments to 'Fy2newRec' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:47:13: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:314:27: warning: passing arguments to 'whatnewline' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:317:17: warning: passing arguments to 'myfgets' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  libphylocom/phylomatic.c:345:17: warning: passing arguments to 'myfgets' without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
  nothing.c:2:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-clang/phylocomr.Rcheck/00install.out’ for details.