Error(s) in re-building vignettes:
  ...
--- re-building ‘dynamAedes_local.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
Loading required package: spatstat.random
spatstat.random 3.0-1
Loading required package: spatstat.core
Loading required package: nlme
Loading required package: rpart
spatstat.core 2.4-4
Loading required package: spatstat.linnet
spatstat.linnet 2.3-2

spatstat 2.3-4       (nickname: 'Watch this space') 
For an introduction to spatstat, type 'beginner' 

Loading required package: sp
Loading required package: gstat

Attaching package: 'gstat'

The following object is masked from 'package:spatstat.core':

    idw

Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.0      ✔ purrr   0.3.5 
✔ tibble  3.1.8      ✔ dplyr   1.0.10
✔ tidyr   1.2.1      ✔ stringr 1.4.1 
✔ readr   2.1.3      ✔ forcats 0.5.2 
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::collapse() masks nlme::collapse()
✖ dplyr::filter()   masks stats::filter()
✖ dplyr::lag()      masks stats::lag()
Loading required package: geosphere

Attaching package: 'geosphere'

The following object is masked from 'package:spatstat.geom':

    perimeter

Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.11.0-CAPI-1.17.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-1 
 Polygon checking: TRUE 

Loading required package: dynamAedes
Loading required package: raster

Attaching package: 'raster'

The following object is masked from 'package:dplyr':

    select

The following object is masked from 'package:nlme':

    getData

starting worker pid=3468969 on localhost:11876 at 20:27:35.045
##########################################
## Life cycle iterations have begun... ##
##########################################
Loading required package: dynamAedes
Loading required package: raster
Loading required package: sp
loaded dynamAedes and set parent environment

  |                                                                            
  |%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%| 100%[1] "No active dispersing females today..."

2000-06-03. Day 1-- of iteration 1 has ended. Population is e: 0 i: 0 a: 4650 d: 0 eh: 0 el: 96587 
Max t: 28.528 

[1] "No active dispersing females today..."

2000-06-04. Day 2-- of iteration 1 has ended. Population is e: 96587 i: 0 a: 900 d: 0 eh: 0 el: 87383 
Max t: 33.067 


2000-06-05. Day 3-- of iteration 1 has ended. Population is e: 145106 i: 0 a: 682 d: 0 eh: 0 el: 0 
Max t: 33.176 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-06. Day 4-- of iteration 1 has ended. Population is e: 97461 i: 0 a: 560 d: 0 eh: 0 el: 12502 
Max t: 32.396 

[1] "No active dispersing females today..."

2000-06-07. Day 5-- of iteration 1 has ended. Population is e: 95240 i: 16739 a: 130 d: 0 eh: 16739 el: 10319 
Max t: 29.701 


2000-06-08. Day 6-- of iteration 1 has ended. Population is e: 71468 i: 32864 a: 113 d: 0 eh: 19361 el: 0 
Max t: 31.715 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-09. Day 7-- of iteration 1 has ended. Population is e: 46902 i: 39611 a: 94 d: 0 eh: 12574 el: 2425 
Max t: 31.506 

[1] "No active dispersing females today..."

2000-06-10. Day 8-- of iteration 1 has ended. Population is e: 30477 i: 30838 a: 19 d: 0 eh: 5845 el: 1977 
Max t: 33.415 


2000-06-11. Day 9-- of iteration 1 has ended. Population is e: 24688 i: 33285 a: 16 d: 0 eh: 8072 el: 0 
Max t: 31.558 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-12. Day 10-- of iteration 1 has ended. Population is e: 14437 i: 18081 a: 7 d: 0 eh: 2207 el: 268 
Max t: 34.528 

[1] "No active dispersing females today..."

2000-06-13. Day 11-- of iteration 1 has ended. Population is e: 11871 i: 16945 a: 691 d: 0 eh: 4099 el: 144 
Max t: 31.783 


2000-06-14. Day 12-- of iteration 1 has ended. Population is e: 7309 i: 7955 a: 879 d: 0 eh: 1110 el: 0 
Max t: 34.908 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-15. Day 13-- of iteration 1 has ended. Population is e: 6084 i: 7963 a: 1400 d: 0 eh: 2624 el: 8265 
Max t: 30.567 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-16. Day 14-- of iteration 1 has ended. Population is e: 11660 i: 8209 a: 1350 d: 0 eh: 1547 el: 17186 
Max t: 30.22 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-17. Day 15-- of iteration 1 has ended. Population is e: 19206 i: 704 a: 43 d: 0 eh: 1 el: 0 
Max t: 39.83 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-18. Day 16-- of iteration 1 has ended. Population is e: 13670 i: 652 a: 40 d: 0 eh: 597 el: 428 
Max t: 32.185 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-19. Day 17-- of iteration 1 has ended. Population is e: 8034 i: 635 a: 33 d: 0 eh: 273 el: 464 
Max t: 33.781 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-20. Day 18-- of iteration 1 has ended. Population is e: 4622 i: 1068 a: 24 d: 0 eh: 758 el: 411 
Max t: 34.575 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-21. Day 19-- of iteration 1 has ended. Population is e: 4085 i: 1804 a: 17 d: 0 eh: 996 el: 552 
Max t: 32.281 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-22. Day 20-- of iteration 1 has ended. Population is e: 3243 i: 1307 a: 7 d: 0 eh: 395 el: 263 
Max t: 34.466 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-23. Day 21-- of iteration 1 has ended. Population is e: 2760 i: 1105 a: 6 d: 0 eh: 426 el: 58 
Max t: 34.218 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-24. Day 22-- of iteration 1 has ended. Population is e: 2219 i: 1240 a: 15 d: 0 eh: 486 el: 0 
Max t: 33.042 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-25. Day 23-- of iteration 1 has ended. Population is e: 1587 i: 1203 a: 12 d: 0 eh: 405 el: 0 
Max t: 33.69 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-26. Day 24-- of iteration 1 has ended. Population is e: 1125 i: 1103 a: 16 d: 0 eh: 304 el: 354 
Max t: 33.53 

[1] "Laying diapausing eggs"

2000-06-27. Day 25-- of iteration 1 has ended. Population is e: 1154 i: 235 a: 9 d: 0 eh: 26 el: 0 
Max t: 38.147 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-28. Day 26-- of iteration 1 has ended. Population is e: 1012 i: 460 a: 21 d: 0 eh: 293 el: 0 
Max t: 32.12 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-29. Day 27-- of iteration 1 has ended. Population is e: 661 i: 596 a: 22 d: 0 eh: 195 el: 148 
Max t: 31.405 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-30. Day 28-- of iteration 1 has ended. Population is e: 515 i: 494 a: 19 d: 0 eh: 86 el: 680 
Max t: 33.832 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-01. Day 29-- of iteration 1 has ended. Population is e: 1042 i: 343 a: 23 d: 0 eh: 55 el: 300 
Max t: 34.434 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-02. Day 30-- of iteration 1 has ended. Population is e: 967 i: 230 a: 27 d: 0 eh: 46 el: 147 
Max t: 34.72 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-03. Day 31-- of iteration 1 has ended. Population is e: 905 i: 246 a: 24 d: 0 eh: 75 el: 604 
Max t: 32.843 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-04. Day 32-- of iteration 1 has ended. Population is e: 1341 i: 350 a: 38 d: 0 eh: 180 el: 444 
Max t: 31.574 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-05. Day 33-- of iteration 1 has ended. Population is e: 1189 i: 224 a: 30 d: 0 eh: 78 el: 287 
Max t: 36.498 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-06. Day 34-- of iteration 1 has ended. Population is e: 1243 i: 312 a: 32 d: 0 eh: 136 el: 349 
Max t: 33.088 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-07. Day 35-- of iteration 1 has ended. Population is e: 1335 i: 482 a: 23 d: 0 eh: 210 el: 438 
Max t: 31.992 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-08. Day 36-- of iteration 1 has ended. Population is e: 1400 i: 606 a: 17 d: 0 eh: 196 el: 277 
Max t: 33.313 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-09. Day 37-- of iteration 1 has ended. Population is e: 1302 i: 725 a: 15 d: 0 eh: 196 el: 77 
Max t: 33.38 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-10. Day 38-- of iteration 1 has ended. Population is e: 864 i: 554 a: 24 d: 0 eh: 90 el: 0 
Max t: 36.124 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-11. Day 39-- of iteration 1 has ended. Population is e: 670 i: 642 a: 33 d: 0 eh: 211 el: 202 
Max t: 33.931 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-12. Day 40-- of iteration 1 has ended. Population is e: 602 i: 598 a: 42 d: 0 eh: 130 el: 361 
Max t: 35.316 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-13. Day 41-- of iteration 1 has ended. Population is e: 776 i: 634 a: 45 d: 0 eh: 127 el: 719 
Max t: 32.632 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-14. Day 42-- of iteration 1 has ended. Population is e: 1224 i: 552 a: 67 d: 0 eh: 47 el: 785 
Max t: 34.101 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-15. Day 43-- of iteration 1 has ended. Population is e: 1778 i: 504 a: 81 d: 0 eh: 65 el: 816 
Max t: 32.916 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-16. Day 44-- of iteration 1 has ended. Population is e: 2197 i: 525 a: 78 d: 0 eh: 111 el: 1223 
Max t: 33.752 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-17. Day 45-- of iteration 1 has ended. Population is e: 3065 i: 729 a: 89 d: 1 eh: 318 el: 1362 
Max t: 31.605 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-18. Day 46-- of iteration 1 has ended. Population is e: 3863 i: 1108 a: 90 d: 1 eh: 472 el: 701 
Max t: 30.666 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-19. Day 47-- of iteration 1 has ended. Population is e: 2480 i: 676 a: 74 d: 0 eh: 114 el: 867 
Max t: 37.596 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-20. Day 48-- of iteration 1 has ended. Population is e: 2760 i: 789 a: 74 d: 0 eh: 305 el: 1068 
Max t: 34.574 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-21. Day 49-- of iteration 1 has ended. Population is e: 3343 i: 1359 a: 68 d: 0 eh: 645 el: 556 
Max t: 30.584 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-22. Day 50-- of iteration 1 has ended. Population is e: 2965 i: 1674 a: 56 d: 0 eh: 429 el: 1115 
Max t: 31.858 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-23. Day 51-- of iteration 1 has ended. Population is e: 3445 i: 2076 a: 75 d: 0 eh: 583 el: 1035 
Max t: 30.56 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-24. Day 52-- of iteration 1 has ended. Population is e: 2567 i: 1188 a: 65 d: 0 eh: 144 el: 199 
Max t: 37.626 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-25. Day 53-- of iteration 1 has ended. Population is e: 1966 i: 1078 a: 75 d: 0 eh: 256 el: 345 
Max t: 35.659 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-26. Day 54-- of iteration 1 has ended. Population is e: 1865 i: 1380 a: 89 d: 0 eh: 452 el: 956 
Max t: 32.225 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-27. Day 55-- of iteration 1 has ended. Population is e: 2117 i: 1424 a: 116 d: 0 eh: 330 el: 1095 
Max t: 33.831 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-28. Day 56-- of iteration 1 has ended. Population is e: 2678 i: 1528 a: 143 d: 0 eh: 313 el: 1028 
Max t: 31.699 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-29. Day 57-- of iteration 1 has ended. Population is e: 3148 i: 1550 a: 165 d: 0 eh: 238 el: 2082 
Max t: 31.456 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-30. Day 58-- of iteration 1 has ended. Population is e: 4727 i: 1861 a: 162 d: 0 eh: 496 el: 2219 
Max t: 30.678 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-31. Day 59-- of iteration 1 has ended. Population is e: 6110 i: 2307 a: 177 d: 0 eh: 677 el: 1791 
Max t: 30.967 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-08-01. Day 60-- of iteration 1 has ended. Population is e: 5573 i: 1892 a: 215 d: 0 eh: 319 el: 1999 
Max t: 35.589 




########################################
## Iterations concluded.              ##
########################################



Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
--- finished re-building ‘dynamAedes_local.Rmd’

--- re-building ‘dynamAedes_punctual.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
Loading required package: spatstat.random
spatstat.random 3.0-1
Loading required package: spatstat.core
Loading required package: nlme
Loading required package: rpart
spatstat.core 2.4-4
Loading required package: spatstat.linnet
spatstat.linnet 2.3-2

spatstat 2.3-4       (nickname: 'Watch this space') 
For an introduction to spatstat, type 'beginner' 

Loading required package: sp
Loading required package: gstat

Attaching package: 'gstat'

The following object is masked from 'package:spatstat.core':

    idw

Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.0      ✔ purrr   0.3.5 
✔ tibble  3.1.8      ✔ dplyr   1.0.10
✔ tidyr   1.2.1      ✔ stringr 1.4.1 
✔ readr   2.1.3      ✔ forcats 0.5.2 
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::collapse() masks nlme::collapse()
✖ dplyr::filter()   masks stats::filter()
✖ dplyr::lag()      masks stats::lag()
Loading required package: geosphere

Attaching package: 'geosphere'

The following object is masked from 'package:spatstat.geom':

    perimeter

Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.11.0-CAPI-1.17.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-1 
 Polygon checking: TRUE 

Loading required package: dynamAedes
Loading required package: raster

Attaching package: 'raster'

The following object is masked from 'package:dplyr':

    select

The following object is masked from 'package:nlme':

    getData

Warning in max(cells.coords[, 2]) :
  no non-missing arguments to max; returning -Inf

 ### Model without dispersal ### 

starting worker pid=3517753 on localhost:11767 at 20:29:53.343
##########################################
## Life cycle iterations have begun... ##
##########################################
Loading required package: dynamAedes
Loading required package: raster
Loading required package: sp
loaded dynamAedes and set parent environment

  |                                                                            
  |%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%| 100%


########################################
## Iterations concluded.              ##
########################################



Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
--- finished re-building ‘dynamAedes_punctual.Rmd’

--- re-building ‘dynamAedes_regional.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
Loading required package: spatstat.random
spatstat.random 3.0-1
Loading required package: spatstat.core
Loading required package: nlme
Loading required package: rpart
spatstat.core 2.4-4
Loading required package: spatstat.linnet
spatstat.linnet 2.3-2

spatstat 2.3-4       (nickname: 'Watch this space') 
For an introduction to spatstat, type 'beginner' 

Loading required package: sp
Loading required package: gstat

Attaching package: 'gstat'

The following object is masked from 'package:spatstat.core':

    idw

Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.0      ✔ purrr   0.3.5 
✔ tibble  3.1.8      ✔ dplyr   1.0.10
✔ tidyr   1.2.1      ✔ stringr 1.4.1 
✔ readr   2.1.3      ✔ forcats 0.5.2 
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::collapse() masks nlme::collapse()
✖ dplyr::filter()   masks stats::filter()
✖ dplyr::lag()      masks stats::lag()
Loading required package: geosphere

Attaching package: 'geosphere'

The following object is masked from 'package:spatstat.geom':

    perimeter

Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.11.0-CAPI-1.17.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-1 
 Polygon checking: TRUE 

Loading required package: dynamAedes
Loading required package: raster

Attaching package: 'raster'

The following object is masked from 'package:dplyr':

    select

The following object is masked from 'package:nlme':

    getData

inside
Quitting from lines 182-196 (dynamAedes_regional.Rmd) 
Error: processing vignette ‘dynamAedes_regional.Rmd’ failed with diagnostics:
error in evaluating the argument ‘obj’ in selecting a method for function ‘coordinates’: package rgdal is required for spTransform methods
--- failed re-building ‘dynamAedes_regional.Rmd’

SUMMARY: processing the following file failed:
  ‘dynamAedes_regional.Rmd’

Error: Vignette re-building failed.
Execution halted