Running ‘Arguments-FILES.R’
  Running ‘FileProgressBar.R’
  Running ‘GString.R’
  Running ‘Java.R’
  Running ‘MultiVerbose.R’
  Running ‘NullVerbose.R’
  Running ‘Options.R’
  Running ‘ProgressBar.R’
  Running ‘Settings.R’
  Running ‘System.R’
  Running ‘TextStatusBar.R’
  Running ‘VComments.R’
  Running ‘Verbose.R’
  Running ‘absolute-relative-paths.R’
  Running ‘attachLocally.R’
  Running ‘callHooks.R’
  Running ‘capitalize.R’
  Running ‘captureOutput.R’
  Running ‘cmdArgs.R’
  Running ‘colClasses.R’
  Running ‘commandArgs.R’
  Running ‘compressFile.R’
  Running ‘compressPDF.R’
  Running ‘copyRenameFile.R’
  Running ‘countLines.R’
  Running ‘cout.R’
  Running ‘createFileAtomically.R’
  Running ‘createLink.R’
  Running ‘dataFrame.R’
  Running ‘dimNA.R’
  Running ‘displayCode.R’
  Running ‘doCall.R’
  Running ‘eget.R’
  Running ‘egsub.R’
  Running ‘env.R’
  Running ‘extract.array.R’
  Running ‘fileAccess.R’
  Running ‘filePath.R’
  Running ‘findFiles.R’
  Running ‘findSourceTraceback.R’
  Running ‘gcDLLs.R’
  Running ‘gcat.R’
  Running ‘getOption.R’
  Running ‘getParent.R’
  Running ‘hpaste.R’
  Running ‘insert.R’
  Running ‘intToHex.R’
  Running ‘isPackageLoaded.R’
  Running ‘isReplicated.R’
  Running ‘isUrl.R’
  Running ‘isZero.R’
  Running ‘listDirectory.R’
  Running ‘loadObject.R’
  Running ‘loadToEnv.R’
  Running ‘mkdirs.R’
  Running ‘mout.R’
  Running ‘mpager.R’
  Running ‘nullfile.R’
  Running ‘parseRepos.R’
  Running ‘pushBackupFile.R’
  Running ‘pushTemporaryFile.R’
  Running ‘queryRCmdCheck.R’
  Running ‘readBinFragments.R’
  Running ‘readWindowsShellLink.R’
  Running ‘readWindowsShortcut.R’
  Running ‘resample.R’
  Running ‘seqToHumanReadable.R’
  Running ‘seqToIntervals.R’
  Running ‘sourceDirectory.R’
  Running ‘sourceTo.R’
  Running ‘splitByPattern.R’
  Running ‘subplots.R’
  Running ‘symlinks,dirs.R’
  Running ‘symlinks,files.R’
  Running ‘systemR.R’
  Running ‘tempvar.R’
  Running ‘tmpfile.R’
  Running ‘toCamelCase.R’
  Running ‘touchFile.R’
  Running ‘use.R’
  Running ‘useRepos.R’
  Running ‘whichVector.R’
  Running ‘withCapture.R’
  Running ‘withLocale.R’
  Running ‘withOptions.R’
  Running ‘withRepos.R’
  Running ‘withSeed.R’
  Running ‘withSink.R’
  Running ‘withTimeout.R’ [1s/10s]
  Running ‘wrap.array.R’
  Running ‘writeDataFrame.R’
  Running ‘zzz_finalizer_crash.R’
Running the tests in ‘tests/parseRepos.R’ failed.
Complete output:
  > library("R.utils")
  Loading required package: R.oo
  Loading required package: R.methodsS3
  R.methodsS3 v1.8.2 (2022-06-13 22:00:14 UTC) successfully loaded. See ?R.methodsS3 for help.
  R.oo v1.25.0 (2022-06-12 02:20:02 UTC) successfully loaded. See ?R.oo for help.
  
  Attaching package: 'R.oo'
  
  The following object is masked from 'package:R.methodsS3':
  
      throw
  
  The following objects are masked from 'package:methods':
  
      getClasses, getMethods
  
  The following objects are masked from 'package:base':
  
      attach, detach, load, save
  
  R.utils v2.12.0 (2022-06-28 03:20:05 UTC) successfully loaded. See ?R.utils for help.
  
  Attaching package: 'R.utils'
  
  The following object is masked from 'package:utils':
  
      timestamp
  
  The following objects are masked from 'package:base':
  
      cat, commandArgs, getOption, isOpen, nullfile, parse, warnings
  
  > 
  > message("CRAN:")
  CRAN:
  > str(as.list(parseRepos("CRAN")))
  Error in get(".read_repositories", envir = ns) : 
    object '.read_repositories' not found
  Calls: str ... as.list -> parseRepos -> reposAll -> reposKnownToR -> get
  Execution halted
Running the tests in ‘tests/useRepos.R’ failed.
Complete output:
  > library("R.utils")
  Loading required package: R.oo
  Loading required package: R.methodsS3
  R.methodsS3 v1.8.2 (2022-06-13 22:00:14 UTC) successfully loaded. See ?R.methodsS3 for help.
  R.oo v1.25.0 (2022-06-12 02:20:02 UTC) successfully loaded. See ?R.oo for help.
  
  Attaching package: 'R.oo'
  
  The following object is masked from 'package:R.methodsS3':
  
      throw
  
  The following objects are masked from 'package:methods':
  
      getClasses, getMethods
  
  The following objects are masked from 'package:base':
  
      attach, detach, load, save
  
  R.utils v2.12.0 (2022-06-28 03:20:05 UTC) successfully loaded. See ?R.utils for help.
  
  Attaching package: 'R.utils'
  
  The following object is masked from 'package:utils':
  
      timestamp
  
  The following objects are masked from 'package:base':
  
      cat, commandArgs, getOption, isOpen, nullfile, parse, warnings
  
  > 
  > # Get current 'repos' option
  > orepos <- useRepos()
  > print(orepos)
  $repos
                            CRAN 
  "file:///data/gannet/ripley/R" 
  
  > 
  > useRepos("http://cran.r-project.org")
  Error in get(".read_repositories", envir = ns) : 
    object '.read_repositories' not found
  Calls: useRepos -> parseRepos -> reposAll -> reposKnownToR -> get
  Execution halted
Running the tests in ‘tests/withRepos.R’ failed.
Complete output:
  > library("R.utils")
  Loading required package: R.oo
  Loading required package: R.methodsS3
  R.methodsS3 v1.8.2 (2022-06-13 22:00:14 UTC) successfully loaded. See ?R.methodsS3 for help.
  R.oo v1.25.0 (2022-06-12 02:20:02 UTC) successfully loaded. See ?R.oo for help.
  
  Attaching package: 'R.oo'
  
  The following object is masked from 'package:R.methodsS3':
  
      throw
  
  The following objects are masked from 'package:methods':
  
      getClasses, getMethods
  
  The following objects are masked from 'package:base':
  
      attach, detach, load, save
  
  R.utils v2.12.0 (2022-06-28 03:20:05 UTC) successfully loaded. See ?R.utils for help.
  
  Attaching package: 'R.utils'
  
  The following object is masked from 'package:utils':
  
      timestamp
  
  The following objects are masked from 'package:base':
  
      cat, commandArgs, getOption, isOpen, nullfile, parse, warnings
  
  > 
  > # Set new default repositories for this test
  > orepos <- options(repos=c(
  +   CRAN="http://cran.r-project.org",
  +   EXAMPLE="http://example.org"
  + ))
  > 
  > message("Current repositories:")
  Current repositories:
  > str(as.list(getOption("repos")))
  List of 2
   $ CRAN   : chr "http://cran.r-project.org"
   $ EXAMPLE: chr "http://example.org"
  > 
  > message("All current repositories:")
  All current repositories:
  > withRepos({
  +   str(as.list(getOption("repos")))
  + })
  Error in get(".read_repositories", envir = ns) : 
    object '.read_repositories' not found
  Calls: withRepos ... useRepos -> parseRepos -> reposAll -> reposKnownToR -> get
  Execution halted