Running 'testthat.R' [13s/22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(seeker)
  > 
  > test_check('seeker')
  qs v0.25.4.
  reading in files with read_tsv
  1 2 
  transcripts missing from tx2gene: 116471
  summarizing abundance
  summarizing counts
  summarizing length
  [ FAIL 2 | WARN 1 | SKIP 17 | PASS 31 ]
  
  == Skipped tests ===============================================================
  * On CRAN (17)
  
  == Failed tests ================================================================
  -- Failure ('test-array-utils.R:97'): getNaiveEsetAe unsupported ---------------
  `getNaiveEsetAe(study, outputDir, file.path(outputDir, "raw"))` threw an unexpected error.
  Message: lexical error: invalid char in json text.
                                         <!doctype html> <html lang="en"
                       (right here) ------^
  
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-testthat::expect_error(...) at test-array-utils.R:97:4
    2. | \-testthat:::expect_condition_matching(...)
    3. |   \-testthat:::quasi_capture(...)
    4. |     +-testthat (local) .capture(...)
    5. |     | \-base::withCallingHandlers(...)
    6. |     \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. \-seeker:::getNaiveEsetAe(...)
    8.   \-seeker:::getAeMetadata(study, "experiments")
    9.     \-jsonlite::fromJSON(rawToChar(raw$content))
   10.       \-jsonlite:::parse_and_simplify(...)
   11.         \-jsonlite:::parseJSON(txt, bigint_as_char)
   12.           \-jsonlite:::parse_string(txt, bigint_as_char)
  -- Error ('test-array-utils.R:129'): getAeMetadata -----------------------------
  Error: lexical error: invalid char in json text.
                                         <!doctype html> <html lang="en"
                       (right here) ------^
  
  Backtrace:
      x
   1. \-seeker:::getAeMetadata(study, type = "experiments") at test-array-utils.R:129:2
   2.   \-jsonlite::fromJSON(rawToChar(raw$content))
   3.     \-jsonlite:::parse_and_simplify(...)
   4.       \-jsonlite:::parseJSON(txt, bigint_as_char)
   5.         \-jsonlite:::parse_string(txt, bigint_as_char)
  
  [ FAIL 2 | WARN 1 | SKIP 17 | PASS 31 ]
  Error: Test failures
  Execution halted