'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  abctools.c:79:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  abctools.c:80:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  abctools.c:81:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  abctools.c:82:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  abctools.c:126:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  abctools.c:195:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  abctools.c:250:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/abctools.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'acceldata2.RData'
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  getLL.c:133:22: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  getLL.c:257:22: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ACDm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Packages suggested but not available for checking:
  'RGtk2', 'gWidgets2RGtk2'
Problems with news in 'NEWS.md':
No news entries found.
Running examples in 'activAnalyzer-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: average_results
> ### Title: Average results over valid days
> ### Aliases: average_results
> 
> ### ** Examples
> 
> file <- system.file("extdata", "acc.agd", package = "activAnalyzer")
> mydata <- prepare_dataset(data = file)
> mydata_with_wear_marks <- mark_wear_time(
+     dataset = mydata, 
+     TS = "TimeStamp", 
+     to_epoch = 60,
+     cts  = "vm",
+     frame = 90, 
+     allowanceFrame = 2, 
+     streamFrame = 30
+     )
Warning: Expected 2 pieces. Missing pieces filled with `NA` in 5 rows [1081, 2521, 3961, 5401, 6841].
frame is 90
streamFrame is 30
allowanceFrame is 2
Error in as.POSIXlt.character(x, tz, ...) : 
  character string is not in a standard unambiguous format
Calls: mark_wear_time ... as.POSIXct.default -> as.POSIXct -> as.POSIXlt -> as.POSIXlt.character
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'activAnalyzer.Rmd' using rmarkdown
Quitting from lines 53-67 (activAnalyzer.Rmd) 
Error: processing vignette 'activAnalyzer.Rmd' failed with diagnostics:
character string is not in a standard unambiguous format
--- failed re-building 'activAnalyzer.Rmd'

SUMMARY: processing the following file failed:
  'activAnalyzer.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
activityCounts-package.html:23:4: Warning: <img> attribute "align" not allowed for HTML5
'LazyData' is specified without a 'data' directory
Running examples in 'activPAL-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: activity.summary.by.window.duration
> ### Title: Summarise activity data from a folder of activPAL events files
> ###   into equal sized periods
> ### Aliases: activity.summary.by.window.duration
> 
> ### ** Examples
> 
> input_folder <- paste(system.file("extdata", "", package = "activPAL"),"/",sep="")
> output_folder <- paste(tempdir(),"/",sep="")
> 
> activPAL::activity.summary.by.window.duration(input_folder,output_folder,2)
Error in .POSIXct(x, tz, ...) : unused argument (origin = "1970-01-01")
Calls: <Anonymous> ... activpal.file.process.split.day.run -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Example.jpeg'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Unknown package 'MHadaptive' in Rd xrefs
checkRd: (-1) ada.Rd:171: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) chickenk.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) multispati.Rd:54: Escaped LaTeX specials: \$
checkRd: (-1) randboot.Rd:34: Escaped LaTeX specials: \&
Found the following significant warnings:
  tests.c:896:31: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:1356:23: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2694:9: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2719:20: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2725:10: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2742:59: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2742:67: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2743:61: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2743:71: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2756:49: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2756:53: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2756:59: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2756:65: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2757:38: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2757:40: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2777:20: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2777:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2783:30: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2965:56: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/adehabitatHR.Rcheck/00install.out' for details.
checkRd: (-1) kernelUD.Rd:210: Escaped LaTeX specials: \&
Found the following significant warnings:
  tests.c:902:31: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:2393:35: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/adehabitatHS.Rcheck/00install.out' for details.
Found the following significant warnings:
  tests.c:905:31: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:3047:56: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:3274:33: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tests.c:3308:32: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/adehabitatLT.Rcheck/00install.out' for details.
Found the following significant warnings:
  tests.c:886:31: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/adehabitatMA.Rcheck/00install.out' for details.
checkRd: (-1) orthobasis.Rd:106: Escaped LaTeX specials: \&
checkRd: (-1) orthobasis.Rd:110: Escaped LaTeX specials: \&
checkRd: (-1) treePart.Rd:33: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [3s/4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(adobeanalyticsr)
  > 
  > test_check("adobeanalyticsr")
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 94 ]
  
  == Failed tests ================================================================
  -- Failure (test-date_utilities.R:22:3): make_timeframe works as expected ------
  `date_result` not equal to `datetime_result`.
  1/1 mismatches
  x[1]: "2021-01-01T00:00:00/2021-01-10T23:59:59"
  y[1]: "2021-01-01/2021-01-10 23:59:59"
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 94 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./adssub.h:6:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  adssub.c:4:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  triangulate.c:66:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  triangulate.c:73:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  triangulate.c:838:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  triangulate.c:945:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  triangulate.c:957:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ads.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'table_AeRobiology'
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) BerryMielke.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) BlairLacy.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) Kvalseth.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) consensus.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) dsquared.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) l.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) lsquared.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) lsquared.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) var.variance.Rd:12: Escaped LaTeX specials: \&
Running examples in 'agroclim-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ehe
> ### Title: Extreme Heat Exposure (EHE)
> ### Aliases: ehe
> 
> ### ** Examples
> 
> 
>             ehe(mx = daily_tmax,
+             dates = seq.Date(as.Date('1981-01-01'),
+                     as.Date('2010-12-31'), by ='day'),
+             op = 'first')
Warning in as.character.POSIXt(as.POSIXlt(x), ...) :
  as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?
Warning in as.character.POSIXt(as.POSIXlt(x), ...) :
  as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?
Error in wini:wend : argument of length 0
Calls: ehe -> ff -> rle
Execution halted
checkRd: (-1) adapt.Rd:41: Escaped LaTeX specials: \$
Package suggested but not available for checking: 'RandomFields'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'ans_19-2.jpg' 'display2d_19-2.jpg' 'dist(3)_19-2.jpg'
  'dist(4)_19-2.jpg' 'dist(mirror)_19-2.jpg' 'dist(mirror2)_19-2.jpg'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'stuve.pdf'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  fun_sublr.cpp:18:22: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ALassoSurvIC.Rcheck/00install.out' for details.
checkRd: (-1) ALF.Rd:47: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Running examples in 'algaeClassify-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: accum
> ### Title: Split a dataframe column with binomial name into genus and
> ###   species columns. Plots change in species richness over time,
> ###   generates species accumulation curve, and compares SAC against
> ###   simulated idealized curve assuming all unique taxa have equal
> ###   probability of being sampled at any point in the time series. (author
> ###   Dietmar Straile)
> ### Aliases: accum
> 
> ### ** Examples
> 
> data(lakegeneva)
> #example dataset with 50 rows
> head(lakegeneva)
  biovol_um3_ml date_dd_mm_yy   lake   month                  phyto_name year
1         39200      10-01-05 Geneva January          Oscillatoria janus 2005
2         21200      10-01-05 Geneva January      Planktothrix rubescens 2005
3         48700      10-01-05 Geneva January     Pseudanabaena limnetica 2005
4          2100      10-01-05 Geneva January Plagioselmis nannoplanctica 2005
5         12000      10-01-05 Geneva January      Plagioselmis lacustris 2005
6         18200      10-01-05 Geneva January         Dinobryon divergens 2005
> 
> accum(b_data=lakegeneva,column='biovol_um3_ml',n=10,save.pdf=FALSE)
Error in .POSIXct(x, tz, ...) : unused argument (format = "%Y-%m-%d")
Calls: accum -> as.POSIXct -> as.POSIXct.default
Execution halted
checkRd: (-1) optimalfrequency.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:31: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) UN1.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) rateprof.Rd:64: Escaped LaTeX specials: \&
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./distance_T.h.h:172:16: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/amap.Rcheck/00install.out' for details.
checkRd: (-1) varrob.Rd:44: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'Zelig'
Found the following significant warnings:
  em.cpp:89:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  em.cpp:89:53: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Amelia.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) deshrink.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) deshrink.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) plot.mat.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) plot.wa.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) predict.prcurve.Rd:5: Escaped LaTeX specials: \&
Package which this enhances but not available for checking: 'SparkR'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'BH-0.05-ListOfGenes.txt' 'BH-0.05-VM-ListOfGenes.txt'
  'CompleteListOfGenes.txt' 'GenesOutOfAnalysis.txt'
  'GenesOutOfAnalysis_NotEnoughObs.txt'
  'GenesOutOfAnalysis_NullVar.txt' 'VM-CompleteListOfGenes.txt'
  'bonferroni-0.05-ListOfGenes.txt'
  'bonferroni-0.05-VM-ListOfGenes.txt'
checkRd: (-1) AncestryMapper2.0-package.Rd:33: Escaped LaTeX specials: \~
checkRd: (-1) AncestryMapper2.0-package.Rd:38: Escaped LaTeX specials: \~
Problems with news in 'NEWS.md':
No news entries found.
Running examples in 'animaltracker-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compare_flags
> ### Title: Joins and reformats two animal data frames for the purpose of
> ###   flag comparison
> ### Aliases: compare_flags
> 
> ### ** Examples
> 
> # Join and reformat unfiltered demo data and filtered demo data
> 
> compare_flags(demo_unfiltered_elev, demo_filtered_elev)
Error in `dplyr::mutate()`:
! Problem while computing `DateTime = as.POSIXct(DateTime, format =
  "%Y-%m-%d %H:%M:%S")`.
Caused by error in `.POSIXct()`:
! unused argument (format = "%Y-%m-%d %H:%M:%S")
Backtrace:
     x
  1. +-animaltracker::compare_flags(demo_unfiltered_elev, demo_filtered_elev)
  2. | \-... %>% dplyr::ungroup()
  3. +-dplyr::ungroup(.)
  4. +-dplyr::distinct(., DateTime, .keep_all = TRUE)
  5. +-dplyr::group_by(., GPS)
  6. +-dplyr::mutate(., DateTime = as.POSIXct(DateTime, format = "%Y-%m-%d %H:%M:%S"))
  7. +-dplyr:::mutate.data.frame(., DateTime = as.POSIXct(DateTime, format = "%Y-%m-%d %H:%M:%S"))
  8. | \-dplyr:::mutate_cols(.data, dplyr_quosures(...), caller_env = caller_env())
  9. |   +-base::withCallingHandlers(...)
 10. |   \-mask$eval_all_mutate(quo)
 11. +-base::as.POSIXct(DateTime, format = "%Y-%m-%d %H:%M:%S")
 12. +-base::as.POSIXct.default(DateTime, format = "%Y-%m-%d %H:%M:%S")
 13. \-base::.handleSimpleError(...)
 14.   \-dplyr (local) h(simpleError(msg, call))
 15.     \-rlang::abort(...)
Execution halted
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) PV_post_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_post_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'SportsAnalytics'
Found the following significant warnings:
  init.c:11:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Anthropometry.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./header.h:50:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bicriterion_iterated_local_search_call.c:510:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/anticlust.Rcheck/00install.out' for details.
Running 'testthat.R' [155s/185s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > 
  > if (!requireNamespace("testthat", quietly = TRUE)) {
  +   stop("The `testthat` package is not available, therefore `anticlust` cannot be tested.")
  + }
  > 
  > library("anticlust")
  > library("testthat")
  > 
  > test_check("anticlust")
  [ FAIL 1 | WARN 0 | SKIP 6 | PASS 5827 ]
  
  == Skipped tests ===============================================================
  * On CRAN (6)
  
  == Failed tests ================================================================
  -- Failure (test-brusco.R:58:3): input and output work expectedly for Brusco algorithm --
  all(tab == c(60, 12, 12, 12)) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 1 | WARN 0 | SKIP 6 | PASS 5827 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'aoristic-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aoristic.df
> ### Title: Calculate aoristic weights
> ### Aliases: aoristic.df
> 
> ### ** Examples
> 
> df <- aoristic.df(dcburglaries, 'X', 'Y', 'StartDateTime', 'EndDateTime')
Warning:  32 failed to parse.
Warning:  6 failed to parse.
Error in if (time.span >= 10080) { : 
  missing value where TRUE/FALSE needed
Calls: aoristic.df
Execution halted
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  get_subplot_boundary_pixels.cpp:37:10: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  polygonize_class.cpp:52:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  polygonize_class.cpp:78:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  polygonize_class.cpp:99:11: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  polygonize_class.cpp:102:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/APAtree.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./me.h:122:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  me.c:234:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ape.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ViterbiC.cpp:217:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  ViterbiC.cpp:528:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  ViterbiC.cpp:814:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  ViterbiC.cpp:1104:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  ViterbiC.cpp:1242:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:45:40: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:59:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:60:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:61:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:62:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:63:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:64:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:65:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:66:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  utils.cpp:67:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/aphid.Rcheck/00install.out' for details.
Found the following significant warnings:
  ../inst/include/tree_meat.hpp:375:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/aphylo.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following calls to attach():
File 'apollo/R/apollo_attach.R':
  attach(as.list(apollo_beta), warn.conflicts = FALSE)
  attach(database, warn.conflicts = FALSE)
  attach(draws, warn.conflicts = FALSE)
  attach(randcoeff, warn.conflicts = FALSE)
  attach(lcpars, warn.conflicts = FALSE)
See section 'Good practice' in '?attach'.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'BayesianTools'
Problems with news in 'NEWS.md':
No news entries found.
Unknown package 'BayesianTools' in Rd xrefs
Found the following files/directories:
  'APBinary_PPV.csv' 'APBinary_TPF.csv'
  'APBinary_ap_summary(method=perturbation,B=1500).csv'
  'APBinary_auc_summary(method=perturbation,B=1500).csv'
  'APSurv_PPV.csv' 'APSurv_TPF.csv'
  'APSurv_ap_summary(method=bootstrap,B=500).csv'
  'APSurv_auc_summary(method=bootstrap,B=500).csv'
  'CompareAP_Binary_dap_summary(method=none).csv'
  'CompareAP_Survival_dap_summary(method=bootstrap,B=500).csv'
checkRd: (-1) AQuadtree-package.Rd:11: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Packages suggested but not available for checking:
  'sfit', 'expectile', 'HaarSeg', 'mpcbs'
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'ARTP'
Found the following significant warnings:
  ARTP2_init.c:17:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ARTP2.Rcheck/00install.out' for details.
Found the following significant warnings:
  ptree.c:47:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  warm.c:217:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/arules.Rcheck/00install.out' for details.
Found the following significant warnings:
  ptree.c:32:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ptree.c:192:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ptree.c:200:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ptree.c:768:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/arulesSequences.Rcheck/00install.out' for details.
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/processx/include/processx/unix-sockets.h:36:58: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/processx/include/processx/unix-sockets.c:118:58: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./asciicast.h:8:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  r.c:26:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  common.c:76:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/asciicast.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'MSToutput.txt'
Package which this enhances but not available for checking: 'asreml'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'asteRiskData'
GNU make is a SystemRequirements.
Found the following significant warnings:
  asv.cpp:293:9: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  asv.cpp:293:39: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  asv.cpp:1294:9: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  asv.cpp:1294:39: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ASV.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Scaled_loops.cpp:203:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  Unscaled_loops.cpp:147:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  Unscaled_nuts_loops.cpp:206:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ATNr.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Unknown package 'snpar' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  driver.c:114:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  driver.c:161:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  driver.c:199:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/audio.Rcheck/00install.out' for details.
File 'audio/libs/audio.so':
  Found non-API call to R: 'R_checkActivity'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  autocart.cpp:71:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  autocart.cpp:71:42: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/autocart.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'AzureStor-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_account_sas
> ### Title: Generate shared access signatures
> ### Aliases: get_account_sas sas shared-access-signature
> ###   shared_access_signature get_account_sas.az_storage
> ###   get_account_sas.storage_endpoint get_account_sas.default
> ###   get_user_delegation_key get_user_delegation_key.az_resource
> ###   get_user_delegation_key.blob_endpoint revoke_user_delegation_keys
> ###   revoke_user_delegation_keys.az_storage get_user_delegation_sas
> ###   get_user_delegation_sas.az_storage
> ###   get_user_delegation_sas.blob_endpoint get_user_delegation_sas.default
> ###   get_service_sas get_service_sas.az_storage
> ###   get_service_sas.storage_endpoint get_service_sas.default
> 
> ### ** Examples
> 
> # account SAS valid for 7 days
> get_account_sas("mystorage", "access_key", start=Sys.Date(), expiry=Sys.Date() + 7)
Error in .POSIXct(unclass(x) * 86400, tz = tz, ...) : 
  unused argument (origin = "1970-01-01")
Calls: get_account_sas ... get_account_sas.default -> make_sas_dates -> as.POSIXct -> as.POSIXct.Date
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'exemplary_input1.txt' 'exemplary_input2.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./utilities.h:67:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./utilities.h:68:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./utilities.h:83:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./Ball_omp.h:6:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./Ball_omp.h:7:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./Ball_omp.h:8:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bd_gwas.c:260:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilities.c:1438:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilities.c:1446:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilities.c:1455:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Ball.Rcheck/00install.out' for details.
Found the following significant warnings:
  ptg.cpp:490:34: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  ptg.cpp:493:34: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bama.Rcheck/00install.out' for details.
Found the following significant warnings:
  bamlss_functions.c:117:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bamlss.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./zz_ksi.h:8:34: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./block.h:8:55: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./block.h:11:16: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./block.h:14:16: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./block.h:18:16: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./block.h:24:16: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./praez.h:6:32: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./praez.h:19:27: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./mxs.h:5:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./mxs.h:23:22: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bamp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) barcode.Rd:52: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:16:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BART.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Earlier versions
checkRd: (-1) bas.lm.Rd:425: Escaped LaTeX specials: \&
Package which this enhances but not available for checking: 'rPython'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) BayesComm-package.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) dilution.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:17: Escaped LaTeX specials: \$
Found the following significant warnings:
  bayesDccGarch.c:48:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bayesDccGarch.c:110:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bayesDccGarch.c:172:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bayesDccGarch.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  clusterMix_rcpp_loop.cpp:39:11: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bayesm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  BayesReversePLLH.cpp:439:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BayesReversePLLH.cpp:1129:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BayesReversePLLH.cpp:1172:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BayesReversePLLH.cpp:3029:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BayesReversePLLH.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) pulse_of_the_nation.Rd:10: Escaped LaTeX specials: \$
GNU make is a SystemRequirements.
Found the following significant warnings:
  arms.cpp:917:45: warning: format specifies type 'unsigned int' but the argument has type 'POINT *' (aka 'point *') [-Wformat]
  arms.cpp:927:56: warning: format specifies type 'unsigned int' but the argument has type 'POINT *' (aka 'point *') [-Wformat]
  arms.cpp:927:58: warning: format specifies type 'unsigned int' but the argument has type 'struct point *' [-Wformat]
  arms.cpp:927:64: warning: format specifies type 'unsigned int' but the argument has type 'struct point *' [-Wformat]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bayesSurv.Rcheck/00install.out' for details.
checkRd: (-1) bart.Rd:271: Escaped LaTeX specials: \_
Found the following significant warnings:
  priorprob.c:45:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  priorprob.c:93:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  priorprob.c:141:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BayesVarSel.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
checkRd: (-1) create_ThetaMatrix.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) create_ThetaMatrix.Rd:41: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  '.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_20_biascor_1.RData'
  '.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_50_biascor_1.RData'
  '.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_20_biascor_1.RData'
  '.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_50_biascor_1.RData'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'fabiabreast.txt'
Package suggested but not available for checking: 'INLA'
Found the following significant warnings:
  clm.cpp:12:9: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  clm.cpp:20:9: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  clm.cpp:20:25: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  clm.cpp:29:8: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  clm.cpp:33:9: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  clm.cpp:33:42: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BCEE.Rcheck/00install.out' for details.
checkRd: (-1) tlsce.Rd:51: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:55: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:90: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:93: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) Glendalough.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Sluggan.Rd:19: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'kBET', 'lisi', 'harmony', 'dlfUtils'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'dump.txt'
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'beast_plot_toy.pdf'
GNU make is a SystemRequirements.
Found the following files/directories:
  'alist.txt' 'rpkg'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  BekkFunctions.cpp:857:83: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  BekkFunctions.cpp:940:81: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  BekkFunctions.cpp:1024:81: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  BekkFunctions.cpp:1107:81: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  ScalarBEKK.cpp:404:81: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  ScalarBEKK.cpp:487:81: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BEKKs.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  chol_down.cpp:21:20: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  chol_down.cpp:22:5: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  chol_down.cpp:23:32: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  chol_down.cpp:49:49: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  chol_down.cpp:51:17: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  chol_down.cpp:51:57: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  chol_down.cpp:101:7: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  chol_down.cpp:101:25: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  chol_down.cpp:205:5: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  outlier.cpp:59:30: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Benchmarking.Rcheck/00install.out' for details.
Found the following significant warnings:
  load.c:11:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./nanotime.h:6:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./nanotime.h:7:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  mark.c:75:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  mark.c:118:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  mark.c:119:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  nanotime.c:61:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  nanotime.c:71:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  process_memory.c:79:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bench.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Checking should be performed on sources prepared by 'R CMD build'.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) scrHpd.Rd:30: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) bgmm-package.Rd:23: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
checkRd: (-1) dotPlot.Rd:56: Escaped LaTeX specials: \&
Found the following significant warnings:
  BHMSMA.cpp:59:8: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  BHMSMA.cpp:143:7: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BHMSMAfMRI.Rcheck/00install.out' for details.
Found the following significant warnings:
  BHSBVAR.cpp:236:71: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:236:23: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:246:72: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:246:23: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:256:97: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:256:122: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:256:23: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:256:47: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:284:68: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:284:20: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:289:69: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:289:20: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:294:94: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:294:119: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:294:20: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  BHSBVAR.cpp:294:44: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BHSBVAR.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./stocc.h:192:3: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./randomc.h:83:3: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./stocR.h:54:3: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  wnchyppr.cpp:636:50: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  wnchyppr.cpp:637:43: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  wnchyppr.cpp:668:21: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BiasedUrn.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) Jeffreysbs.Rd:17: Escaped LaTeX specials: \&
Found the following significant warnings:
  rbimax.c:326:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/biclust.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'ffbase'
Package suggested but not available for checking: 'INLA'
Found the following significant warnings:
  ./lib.h:6:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lib.c:3:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bigGP.Rcheck/00install.out' for details.
Found the following calls to data() loading into the global environment:
File 'biglm/R/bigglm.R':
  data(reset = TRUE)
  data(reset = FALSE)
See section 'Good practice' in '?data'.
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'rrelaxiv'
Checking should be performed on sources prepared by 'R CMD build'.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  pcg_basic.c:73:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  util.c:699:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BigQuic.Rcheck/00install.out' for details.
Found the following files/directories:
  'outputs'
Running 'testthat.R' [5s/7s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(bigrquery)
  > 
  > test_check("bigrquery")
  [ FAIL 1 | WARN 1 | SKIP 66 | PASS 128 ]
  
  == Skipped tests ===============================================================
  * Authentication not available (8)
  * No BigQuery access credentials available (55)
  * On CRAN (1)
  * On Linux (1)
  * bq_authable() is not TRUE (1)
  
  == Failed tests ================================================================
  -- Error (test-bq-parse.R:37:3): can parse date/times --------------------------
  Error in `round(x$sec[n0], digits)`: non-numeric argument to mathematical function
  Backtrace:
      x
   1. +-testthat::expect_identical(...) at test-bq-parse.R:37:2
   2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
   3. |   \-rlang::eval_bare(expr, quo_get_env(quo))
   4. +-bigrquery:::bq_parse_single(...)
   5. | \-jsonlite::toJSON(value, auto_unbox = TRUE)
   6. |   \-base::force(x)
   7. +-base::as.character(dt, "%Y-%m-%dT%H:%M:%S")
   8. \-base::as.character.POSIXt(dt, "%Y-%m-%dT%H:%M:%S")
  
  [ FAIL 1 | WARN 1 | SKIP 66 | PASS 128 ]
  Error: Test failures
  Execution halted
Found the following significant warnings:
  ./binarizeBASCA.h:37:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  TASC.c:258:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  TASC_min.c:256:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  binarizeBASCA.c:358:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Binarize.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) BinaryEPPM.Rd:159: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'ccf_ccf_ID31_ID32_res.jpg' 'ccf_ccf_ID31_ID32_res.pdf'
  'output_ENSO_NHSST.tmp' 'plot_plot_ts_RAW_BIN_enso_sst.pdf'
  'plot_plot_ts_RAW_BIN_enso_sst01.png'
  'plot_plot_ts_RAW_BIN_enso_sst02.png'
  'plot_plot_ts_RAW_BIN_enso_sst03.png'
  'plot_plot_ts_RAW_BIN_enso_sst04.png' 'plot_ts_ACER_ABRUPT.pdf'
  'plot_ts_ACER_ABRUPT01.png' 'plot_ts_ACER_ABRUPT02.png'
  'plot_ts_ACER_ABRUPT03.png' 'plot_ts_ACER_ABRUPT04.png'
  'salida_ACER_ABRUPT.tmp' 'scaterplot_scatterplot_ENSO_SST.jpg'
  'scaterplot_scatterplot_ENSO_SST.pdf'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'msa'
checkRd: (-1) core.find.Rd:30: Escaped LaTeX specials: \_
checkRd: (-1) core.find.Rd:87: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:89: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:91: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:93: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:95: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:97: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
Found the following files/directories:
  'Plots.pdf'
Found the following files/directories:
  'pointshape.dbf' 'pointshape.shp' 'pointshape.shx'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'asreml'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) tocher.Rd:13: Escaped LaTeX specials: \&
Found the following significant warnings:
  bmn5.cc:48:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bipartite.Rcheck/00install.out' for details.
checkRd: (-1) NOS.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) specieslevel.Rd:156: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  bit.c:57:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bit.c:68:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  chunkutil.c:3:24: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  init.c:24:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bit.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./binarizeBASCA.h:37:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  TASC.c:258:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  TASC_min.c:256:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  binarizeBASCA.c:358:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BiTrinA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'RQuantLib'
'LazyData' is specified without a 'data' directory
Running examples in 'blaise-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write_fwf_blaise_with_model
> ### Title: Write a fixed width ascii datafile based on a given blaise
> ###   datamodel
> ### Aliases: write_fwf_blaise_with_model
> 
> ### ** Examples
> 
> datafilename = tempfile('testdata', fileext = '.asc')
> blafilename = tempfile('testbla', fileext = '.bla')
> 
> model = "
+ DATAMODEL Test
+ FIELDS
+ A     : STRING[1]
+ B     : INTEGER[1]
+ C     : REAL[3,1]
+ D     : REAL[3]
+ E     : (Male, Female)
+ F     : 1..20
+ G     : 1.00..100.00
+ H     : DATETYPE
+ ENDMODEL
+ "
> writeLines(model, con = blafilename)
> 
>   df = data.frame(
+ list(
+   A = rep('t',3),
+   B = 1:3,
+   C = 1.1:3.3,
+   D = 1.0:3.0,
+   E = factor(c(1,2,1), labels = c('Male', 'Female')),
+   F = 1:3,
+   G = c(1., 99.9, 78.5),
+   H = as.Date(rep('2001-01-01', 3))
+ )
+ )
> write_fwf_blaise_with_model(df, datafilename, blafilename)
Warning in as.character.POSIXt(as.POSIXlt(x), ...) :
  as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?
> 
> 
> model = "
+ DATAMODEL Test
+ FIELDS
+ A     : STRING[1]
+ B     : STRING[1]
+ C     : STRING[3]
+ E     : STRING[1]
+ H     : STRING[8]
+ ENDMODEL
+ "
> writeLines(model, con = blafilename)
> 
> df = data.frame(
+ list(
+ A = rep('t',3),
+ E = factor(c(1,2,1), labels = c('Male', 'Female')),
+ B = 1:3,
+ C = 1.1:3.3,
+ H = as.Date(rep('2001-01-01', 3))
+ ),
+ stringsAsFactors = FALSE
+ )
> write_fwf_blaise_with_model(df, datafilename, blafilename)
Warning in as.character.POSIXt(as.POSIXlt(x), ...) :
  as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?
Error in (function (col, var)  : 
  width in datamodel smaller than number of characters of largest element for variable: H
Calls: write_fwf_blaise_with_model ... create_fixed_width_column -> as.data.frame -> mapply -> <Anonymous>
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
GNU make is a SystemRequirements.
checkRd: (-1) posteriorFeasibility.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) sp500Returns.Rd:4: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Forest.cpp:350:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/blockForest.Rcheck/00install.out' for details.
Found the following significant warnings:
  blockmodelingC.c:3303:24: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3303:57: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3303:61: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3303:71: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3303:99: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3303:104: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3303:119: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3304:39: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3304:56: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3304:69: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3307:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3307:63: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  blockmodelingC.c:3309:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/blockmodeling.Rcheck/00install.out' for details.
Found the following significant warnings:
  cppFunctions.cpp:171:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BLPestimatoR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
Found the following significant warnings:
  node_pos_all.cpp:670:55: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  node_pos_contribution.cpp:348:55: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  node_pos_motifweights.cpp:352:55: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  node_pos_nodeweights.cpp:329:55: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  node_pos_stouffer.cpp:421:55: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  sd.cpp:283:55: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bmotif.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Package suggested but not available for checking: 'INLA'
GNU make is a SystemRequirements.
Found the following significant warnings:
  basic-misc.cpp:29:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bnclassify.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./include/register.h:46:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./include/register.h:75:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./include/register.h:76:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./include/register.h:82:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  globals.c:15:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  globals.c:33:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  test.counter.c:26:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  test.counter.c:35:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bnlearn.Rcheck/00install.out' for details.
Found the following significant warnings:
  get_latents.cpp:216:17: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BNPMIXcluster.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  common.c:15:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:9:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./random.h:12:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sat_search.c:106:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  symbolic_simulator.c:344:53: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BoolNet.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'flow'
Error(s) in re-building vignettes:
  ...
--- re-building 'how-boomer-works.Rmd' using rmarkdown
Quitting from lines 67-68 (how-boomer-works.Rmd) 
Error: processing vignette 'how-boomer-works.Rmd' failed with diagnostics:
there is no package called 'flow'
--- failed re-building 'how-boomer-works.Rmd'

--- re-building 'shiny.Rmd' using rmarkdown
--- finished re-building 'shiny.Rmd'

SUMMARY: processing the following file failed:
  'how-boomer-works.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  math/cephes/planck.cpp:84:54: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Boom.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Packages suggested but not available for checking: 'cplexAPI', 'bestsubset'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    modules 0.x
'LazyData' is specified without a 'data' directory
checkRd: (-1) bpca.Rd:85: Escaped LaTeX specials: \&
Found the following significant warnings:
  ./randomnumbers.h:15:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  randomnumbers.c:13:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BPEC.Rcheck/00install.out' for details.
checkRd: (-1) bp_rats.Rd:41: Escaped LaTeX specials: \&
Found the following significant warnings:
  lapadj.c:34:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lapadj.c:35:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  upbqtl.c:35:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  upbqtl.c:36:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bqtl.Rcheck/00install.out' for details.
checkRd: (-1) R2txtJG.Rd:90: Escaped LaTeX specials: \#
Packages suggested but not available for checking: 'RGtk2', 'cairoDevice'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  exhaust_bic.cpp:269:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  exhaust_bic.cpp:290:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/breakfast.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
Package suggested but not available for checking: 'glmmADMB'
Found the following significant warnings:
  dec/decode.c:2490:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  common/dictionary.c:5893:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/brotli.Rcheck/00install.out' for details.
checkRd: (-1) brr-package.Rd:33: Escaped LaTeX specials: \&
Found the following significant warnings:
  BugsHelper.c:76:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  BugsHelper.c:87:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  BugsHelper.c:88:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BRugs.Rcheck/00install.out' for details.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/Makefile.win
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  simulate_toad.cpp:155:17: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  simulate_toad.cpp:182:17: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BSL.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gvcm.cat'
Unknown package 'gvcm.cat' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) kink_estimator.Rd:60: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  opt.cpp:110:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  opt.cpp:110:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bzinb.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) deleteZeroComponents.Rd:70: Escaped LaTeX specials: \& \&
Found the following significant warnings:
  cairobem.c:50:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./Rapi.h:9:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./Rapi.h:11:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cairotalk.c:661:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cairotalk.c:1552:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cairotalk.c:1588:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  xlib-backend.c:156:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Cairo.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ReGenesees'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'tmp.txt'
Found the following files/directories:
  'MDA231_tree.pdf'
checkRd: (-1) caic-class.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) caic-class.Rd:15: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    captr .1.4
    captr .1.3
    captr .1.2
'LazyData' is specified without a 'data' directory
checkRd: (-1) States.Rd:48: Escaped LaTeX specials: \$
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  graphical-intercept-ALASSO.cpp:151:25: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  graphical-intercept-ALASSO.cpp:414:25: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CARlasso.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot-methods.Rd:46: Escaped LaTeX specials: \_
checkRd: (-1) plot-methods.Rd:96: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'GAMBoost'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'catmapdata.fixed.effects.plot.pdf' 'catmapdata.funnel.plot.pdf'
  'catmapdata.output.txt' 'catmapdata.random.effects.plot.pdf'
Found the following significant warnings:
  ./catnet_rexport.h:63:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/catnet.Rcheck/00install.out' for details.
checkRd: (-1) belt.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) bipf.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) crime.Rd:17: Escaped LaTeX specials: \&
checkRd: (-1) da.cat.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) dabipf.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) ecm.cat.Rd:77: Escaped LaTeX specials: \&
checkRd: (-1) em.cat.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) ipf.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) logpost.cat.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) mda.cat.Rd:67: Escaped LaTeX specials: \&
checkRd: (-1) mi.inference.Rd:140: Escaped LaTeX specials: \&
checkRd: (-1) older.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) prelim.cat.Rd:67: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Cat.cpp:230:39: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Estimator.cpp:548:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Estimator.cpp:609:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Estimator.cpp:863:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Estimator.cpp:879:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Estimator.cpp:903:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Estimator.cpp:918:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Estimator.cpp:987:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Estimator.cpp:1135:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  QuestionSet.cpp:163:25: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  QuestionSet.cpp:167:29: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  WLEEstimator.cpp:261:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  WLEEstimator.cpp:277:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/catSurv.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) tpcExample.Rd:30: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  proximus.c:6:12: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cba.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    News about the ccdf R package
Found the following significant warnings:
  median.c:15:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cclust.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'hotcold.csv'
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'out.png' 'out1.txt' 'out2.txt'
Found the following files/directories:
  'figure01ceg.pdf' 'figure02ceg.pdf' 'staged.tree.graph.pdf'
  'stratified-event-tree-plot.pdf'
'LazyData' is specified without a 'data' directory
Unexported objects imported by ':::' calls:
  'copula:::dCdu' 'copula:::fitCopStart'
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'alr3'
Problems with news in 'NEWS.md':
No news entries found.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Major refactoring of the code
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./graph.h:85:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./session.h:40:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  session.c:29:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cgraph.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  NPPELT.c:41:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  NPPELT.c:42:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  NPPELT.c:43:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  NPPELT.c:72:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/changepoint.np.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ChannelAttribution.cpp:694:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  ChannelAttribution.cpp:696:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ChannelAttribution.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'darts'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  treeshap.cpp:148:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cheem.Rcheck/00install.out' for details.
checkRd: (-1) hyptis.Rd:31: Escaped LaTeX specials: \&
Found the following files/directories:
  'stepres00.txt'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'countreg'
Found the following significant warnings:
  RandIndex.cpp:28:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  RandIndex.cpp:30:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  RandIndex.cpp:33:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/chickn.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
Package unavailable to check Rd xrefs: 'cmdstanr'
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'entab'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  newplt.cc:186:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  newplt.cc:188:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CIFsmry.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'userfriendlyscience'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./libcld3/script_span/getonescriptspan.h:36:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
  libcld3/script_span/getonescriptspan.h:36:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cld3.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./cleancall.h:30:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cleancall.c:40:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:12:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  test.c:68:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cleancall.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    clhs_0.7-2
    clhs_0.7-0
    clhs_0.6-0
    clhs_0.5-7
    clhs_0.5-6
    clhs_0.5-3
    clhs_0.5-2
    clhs_0.5-1
    clhs_0.5-0
    clhs_0.4-3
    clhs_0.4-2
    clhs_0.4-1
    clhs_0.4-0
    clhs_0.3-2
    clhs_0.3-1
    clhs_0.3-0
    clhs_0.2-1
    clhs_0.2-0
    clhs_0.1-0
'LazyData' is specified without a 'data' directory
checkRd: (-1) diagwl.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) diagwl.Rd:5: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    clinfun (development version)
checkRd: (-1) coxphCPE.Rd:2: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) dataADaMCDISCP01.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) clme.Rd:84: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./criteria.h:45:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./criteria.h:48:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/clusterCrit.Rcheck/00install.out' for details.
checkRd: (-1) genRandomClust.Rd:228: Escaped LaTeX specials: \_
checkRd: (-1) genRandomClust.Rd:259: Escaped LaTeX specials: \_
checkRd: (-1) genRandomClust.Rd:327: Escaped LaTeX specials: \_
checkRd: (-1) plot1DProjection.Rd:95: Escaped LaTeX specials: \_ \_
checkRd: (-1) plot2DProjection.Rd:117: Escaped LaTeX specials: \_ \_
checkRd: (-1) simClustDesign.Rd:235: Escaped LaTeX specials: \_
checkRd: (-1) simClustDesign.Rd:268: Escaped LaTeX specials: \_
checkRd: (-1) simClustDesign.Rd:331: Escaped LaTeX specials: \_
Found the following files/directories:
  'clusterhap_reports'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'CRTSize'
checkRd: (-1) HINoV.Mod.rd:3: Escaped LaTeX specials: \&
checkRd: (-1) HINoV.Symbolic.rd:3: Escaped LaTeX specials: \&
checkRd: (-1) cluster.Gen.rd:14: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:18: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:29: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) cluster.Gen.rd:33: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:34: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:36: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:38: Escaped LaTeX specials: \_ \_
checkRd: (-1) cluster.Gen.rd:51: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:52: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:54: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:55: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:62: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) comparing.Partitions.rd:12: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) dist.BC.rd:10: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) dist.GDM.rd:33: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) dist.SM.rd:10: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.C.rd:11: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.G2.rd:11: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.G3.rd:11: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.H.rd:16: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.S.rd:12: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) dtmvnom.Rd:30: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  optimal_assignment.c:47:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/clv.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Rwrapper.c:84:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Rwrapper.c:184:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cmfrec.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot.predict.crrQR.Rd:18: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crrQR.Rd:22: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crr.Rd:18: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crr.Rd:22: Escaped LaTeX specials: \#
Problems with news in 'NEWS.md':
No news entries found.
Running examples in 'cmsafops-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hourmean
> ### Title: Determine hourly means
> ### Aliases: hourmean
> 
> ### ** Examples
> 
> ## Create an example NetCDF file with a similar structure as used by CM
> ## SAF. The file is created with the ncdf4 package.  Alternatively
> ## example data can be freely downloaded here: <https://wui.cmsaf.eu/>
> 
> library(ncdf4)
> 
> ## create some (non-realistic) example data
> 
> lon <- seq(5, 15, 0.5)
> lat <- seq(45, 55, 0.5)
> 
> time <- seq(ISOdate(2000, 1, 1), ISOdate(2000, 1, 2), "mins")
> origin <- as.Date("1983-01-01 00:00:00")
> time <- as.numeric(difftime(time, origin, units = "min"))
> data <- array(250:350, dim = c(21, 21, 1441))
> ## create example NetCDF
> 
> x <- ncdim_def(name = "lon", units = "degrees_east", vals = lon)
> y <- ncdim_def(name = "lat", units = "degrees_north", vals = lat)
> t <- ncdim_def(name = "time", units = "minutes since 1983-01-01 00:00:00",
+               vals = time, unlim = TRUE)
> var1 <- ncvar_def("SIS", "W m-2", list(x, y, t), -1, prec = "short")
> vars <- list(var1)
> ncnew <- nc_create(file.path(tempdir(),"CMSAF_example_file.nc"), vars)
> ncvar_put(ncnew, var1, data)
> ncatt_put(ncnew, "lon", "standard_name", "longitude", prec = "text")
> ncatt_put(ncnew, "lat", "standard_name", "latitude", prec = "text")
> nc_close(ncnew)
> 
> ## Determine the hourly means of the example CM SAF NetCDF file
> ## and write the output to a new file.
> hourmean(var = "SIS", infile = file.path(tempdir(),"CMSAF_example_file.nc"), 
+  outfile = file.path(tempdir(),"CMSAF_example_file_hourmean.nc"))
Error in hourx_wrapper(1, var, infile, outfile, nc34, overwrite, verbose,  : 
  The time steps must be available at least every hour. Please try daysum for diurnal aggregation. 
Calls: hourmean -> hourx_wrapper
Execution halted
Running 'spelling.R' [0s/1s]
  Comparing 'spelling.Rout' to 'spelling.Rout.save' ...6c6
< NULL
---
> All Done!
  Running 'testthat.R' [143s/167s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(cmsafops)
  > 
  > test_check("cmsafops")
  149016292920292920149016149016149016149028149016[ FAIL 3 | WARN 0 | SKIP 0 | PASS 9082 ]
  
  == Failed tests ================================================================
  -- Error (test_hourmean.R:8:1): (code run outside of `test_that()`) ------------
  Error in `hourx_wrapper(1, var, infile, outfile, nc34, overwrite, verbose, 
      nc = nc)`: The time steps must be available at least every hour. Please try daysum for diurnal aggregation. 
  Backtrace:
      x
   1. \-cmsafops::hourmean(...) at test_hourmean.R:8:0
   2.   \-cmsafops:::hourx_wrapper(...)
  -- Error (test_hoursum.R:8:1): (code run outside of `test_that()`) -------------
  Error in `hourx_wrapper(2, var, infile, outfile, nc34, overwrite, verbose, 
      nc = nc)`: The time steps must be available at least every hour. Please try daysum for diurnal aggregation. 
  Backtrace:
      x
   1. \-cmsafops::hoursum(...) at test_hoursum.R:8:0
   2.   \-cmsafops:::hourx_wrapper(...)
  -- Error (test_mondaymean.R:8:1): (code run outside of `test_that()`) ----------
  Error in `mondaymean("SIS", file.path(data_dir, "ex_mondaymean.nc"), file_out)`: The time steps must be available every 15min (at least 12 days per month), 30min (at least 6 days per month) or 1h (at least 3 days per month). One or more time steps do not meet the requirements. The result of these time steps is NA. 
  Backtrace:
      x
   1. \-cmsafops::mondaymean(...) at test_mondaymean.R:8:0
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 9082 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'tobit1'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) drqssbc.Rd:83: Escaped LaTeX specials: \&
checkRd: (-1) qbsks.Rd:81: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'rkward'
Package which this enhances but not available for checking: 'rkward'
Package suggested but not available for checking: 'userfriendlyscience'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'foo.R' 'foo.html'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  base_radixsort.c:63:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  base_radixsort.c:80:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  base_radixsort.c:163:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  base_radixsort.c:172:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  base_radixsort.c:1720:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  base_radixsort.c:1721:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./data.table.h:83:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./data.table.h:83:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  data.table_init.c:43:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  data.table_rbindlist.c:475:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  data.table_rbindlist.c:516:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/collapse.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./utils.h:8:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  collections.c:11:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utils.c:5:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utils.c:18:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/collections.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'cometExactTest_plot.pdf'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  cmark/cmark-gfm.h:114:43: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cmark/cmark-gfm.h:120:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  extensions.c:5:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:6:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cmark/cmark.c:13:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cmark/cmark.c:15:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cmark/cmark.c:41:43: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cmark/arena.c:101:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/commonmark.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'CAM'
checkRd: (-1) compareGroups-package.Rd:52: Escaped LaTeX specials: \~
Found the following significant warnings:
  sprinkler.c:6:14037: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CompModels.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) HouseholdExp.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) HouseholdExp.Rd:27: Escaped LaTeX specials: \$
checkRd: (-1) mix2compositions.Rd:28: Escaped LaTeX specials: \$
checkRd: (-1) mixRead.Rd:30: Escaped LaTeX specials: \$ \$
checkRd: (-1) mixRead.Rd:31: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Deprecation
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) babies.Rd:35: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'design_names.csv' 'design_numbers.csv'
  'encoded_orthogonal_factorial_design.csv'
  'orthogonal_factorial_design.csv'
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'conosPanel', 'p2data'
Installation failed.
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/conos.Rcheck/00install.out' for details.
checkRd: (-1) plotMCC.Rd:19: Escaped LaTeX specials: \_
GNU make is a SystemRequirements.
Found the following significant warnings:
  brentmin.c:237:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ContaminatedMixt.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'cec2005benchmark', 'cec2013'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./options.h:85:57: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CORElearn.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) poss_local.Rd:21: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
checkRd: (-1) BrownBigrams.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BrownLOBPassives.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BrownPassives.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BrownStats.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) KrennPPV.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) KrennPPV.Rd:74: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) sgt.Rd:16: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) egde.Rd:26: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) cosmoFns-package.Rd:34: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package required but not available: 'ctsem'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  bb.c:719:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ibb.c:78:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/countdata.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'covatest-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read.STdata
> ### Title: Imports a text file in R
> ### Aliases: read.STdata
> 
> ### ** Examples
> 
> #example 1: import a text file, with dates stored in a single column (the 4th)
> # and fill missing time points in monthly time series, with time lag equal to one
> 
> file_date <- system.file("extdata", "file_date.txt", package = "covatest")
> db.date <- read.STdata(file = file_date, header = TRUE, iclx = 2, icly = 3, iclt = 0,
+ icldate = c(icl.date = 4, iclty = 0, icltm = 0, icltd = 0),
+ icltime = c(icl.time = 0, icltH =0, icltM = 0, icltS = 0),
+ iclvr = 5, iclsp = 1, missing.v = -99999, save.as = "data.frame",
+ date.format = c("Date", "%d-%m-%Y"), bytime = "%m", tlag = 1)
Killed
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'covfefe_inauguration.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  CPGLIB.cpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./ProxGrad.hpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  CPGLIB_Main.cpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./CV_ProxGrad.hpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./CV_CPGLIB.hpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  CV_CPGLIB_Main.cpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  CV_ProxGrad.cpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  CV_ProxGrad_Main.cpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ProxGrad.cpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ProxGrad_Main.cpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CPGLIB.Rcheck/00install.out' for details.
Found the following significant warnings:
  bcplm.c:84:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cplm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Non-visible changes:
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./crf/src/crfsuite_internal.h:169:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./crf/src/params.h:36:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  crf/src/crf1d_encode.c:1031:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  crf/src/crf1d_feature.c:77:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./crf/src/quark.h:39:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  crf/src/params.c:252:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  crf/src/quark.c:72:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/crfsuite.Rcheck/00install.out' for details.
BugReports field is not a suitable URL but contains an email address:
   use the Contact field instead
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following HTML validation problems:
download_terraclimate.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
download_terraclimate.html:20:1: Warning: <img> proprietary attribute "logo"
eto_calibration.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
eto_calibration.html:20:1: Warning: <img> proprietary attribute "logo"
loadROI.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
loadROI.html:20:1: Warning: <img> proprietary attribute "logo"
monthly_stack.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
monthly_stack.html:20:1: Warning: <img> proprietary attribute "logo"
plot_AWC.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
plot_AWC.html:20:1: Warning: <img> proprietary attribute "logo"
ppt_calibration.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
ppt_calibration.html:20:1: Warning: <img> proprietary attribute "logo"
see_brazil_biomes.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
see_brazil_biomes.html:20:1: Warning: <img> proprietary attribute "logo"
see_brazil_states.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
see_brazil_states.html:20:1: Warning: <img> proprietary attribute "logo"
waterDemand.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
waterDemand.html:20:1: Warning: <img> proprietary attribute "logo"
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'crop.eps' 'crop.pdf' 'crop.png' 'crop.ps'
'LazyData' is specified without a 'data' directory
Found the following HTML validation problems:
ccrop_zoning.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
ccrop_zoning.html:20:1: Warning: <img> proprietary attribute "logo"
download_terraclimate.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
download_terraclimate.html:20:1: Warning: <img> proprietary attribute "logo"
loadROI.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
loadROI.html:20:1: Warning: <img> proprietary attribute "logo"
plot_ccrop_zoning.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
plot_ccrop_zoning.html:20:1: Warning: <img> proprietary attribute "logo"
see_brazil_biomes.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
see_brazil_biomes.html:20:1: Warning: <img> proprietary attribute "logo"
see_brazil_states.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
see_brazil_states.html:20:1: Warning: <img> proprietary attribute "logo"
tmax_calibration.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
tmax_calibration.html:20:1: Warning: <img> proprietary attribute "logo"
tmean.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
tmean.html:20:1: Warning: <img> proprietary attribute "logo"
tmean_monthly_stack.html:20:1: Warning: <img> attribute "width" has invalid value "auto"
tmean_monthly_stack.html:20:1: Warning: <img> proprietary attribute "logo"
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Major features
    Minor features
checkRd: (-1) handmovement.Rd:9: Escaped LaTeX specials: \_ \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
  ...
--- re-building 'MTZ.Rmd' using rmarkdown
Killed
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./structs.h:44:46: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  vector.c:125:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ctl.Rcheck/00install.out' for details.
Found the following significant warnings:
  init.c:11:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ctmcd.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package required but not available: 'ctsem'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ctsem.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Hello.csv'
Found the following significant warnings:
  ../inst/include/cuba.h:75:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../inst/include/cuba.h:76:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cubature.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./redefine.h:9:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./redefine.h:27:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  formrules.c:210:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  formrules.c:222:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  formrules.c:401:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  getdata.c:44:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./hash.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rcubist.c:40:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  redefine.c:46:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  redefine.c:191:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rulebasedmodels.c:197:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rulebasedmodels.c:202:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  top.c:10:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Cubist.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
File 'curl/libs/curl.so':
  Found non-API call to R: 'R_new_custom_connection'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Adjusted_p_values.pdf' 'Effect_Size_Curves.pdf'
  'Mean_Difference_Curves.pdf'
Found the following significant warnings:
  inpolygon.c:109:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/curvHDR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Misc
checkRd: (-1) abs_d_ppv_npv.Rd:27: Escaped LaTeX specials: \_ \_ \_
Package which this enhances but not available for checking: 'RGtk2'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [150s/170s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(cvms)
  > 
  > test_check("cvms")
  [ FAIL 1 | WARN 0 | SKIP 70 | PASS 3622 ]
  
  == Skipped tests ===============================================================
  * Fails in check - IMPROVE THESE TESTS (1)
  * On CRAN (58)
  * Skipping check for CRAN release due to r_hub failure (1)
  * Skipping parallel tests (3)
  * empty test (1)
  * keras and tensorflow take too long and have too many dependencies (1)
  * mac and ubuntu give different warnings (4)
  * tidymodels have too many dependencies (1)
  
  == Failed tests ================================================================
  -- Failure (test_cross_validate.R:3481:5): varying number of folds in repeated cv with cross_validate() --
  CV$Coefficients not equal to list(...).
  Component 1: Attributes: < Names: 12 string mismatches >
  Component 1: Attributes: < Length mismatch: comparison on first 36 components >
  Component 1: Attributes: < Component 26: Modes: character, logical >
  Component 1: Attributes: < Component 26: Lengths: 2, 1 >
  Component 1: Attributes: < Component 26: names for target but not for current >
  Component 1: Attributes: < Component 26: target is character, current is logical >
  Component 1: Attributes: < Component 27: Modes: logical, numeric >
  Component 1: Attributes: < Component 27: target is logical, current is numeric >
  Component 1: Attributes: < Component 28: Modes: numeric, logical >
  ...
  
  [ FAIL 1 | WARN 0 | SKIP 70 | PASS 3622 ]
  Error: Test failures
  Execution halted
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'lattice' 'robustbase'
A package should be listed in only one of these fields.
Packages which this enhances but not available for checking:
  'gurobi', 'rcbc'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    CVXR pre-0.94-4
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) dspg.Rd:29: Escaped LaTeX specials: \^ \^
checkRd: (-1) dspgd2015.Rd:31: Escaped LaTeX specials: \^ \^
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'dash'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'dash'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'dash'
Package suggested but not available for checking: 'dash'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  DTRegion3D.cpp:58:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  DTRegion3D.cpp:102:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DataGraph.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'my new data set.rds'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'dataquieR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: con_detection_limits
> ### Title: con_detection_limits
> ### Aliases: con_detection_limits
> 
> ### ** Examples
> 
> load(system.file("extdata", "study_data.RData", package = "dataquieR"))
> load(system.file("extdata", "meta_data.RData", package = "dataquieR"))
> 
> # make things a bit more complicated for the function, giving datetimes
> # as numeric
> study_data[,
+   vapply(study_data, inherits, "POSIXct", FUN.VALUE = logical(1))] <-
+   lapply(study_data[, vapply(study_data, inherits, "POSIXct",
+   FUN.VALUE = logical(1))], as.numeric)
> 
> MyValueLimits <- con_limit_deviations(
+   resp_vars = NULL,
+   label_col = "LABEL",
+   study_data = study_data,
+   meta_data = meta_data,
+   limits = "HARD_LIMITS"
+ )
Warning: In con_limit_deviations: All variables with HARD_LIMITS in the metadata are used.
> con_limit_deviations(resp_vars = NULL, label_col = "LABEL", study_data = study_data, 
    meta_data = meta_data, limits = "HARD_LIMITS")

Error in .POSIXct(x, tz, ...) : unused argument (origin = 0)
Calls: con_limit_deviations -> lapply -> FUN -> as.POSIXct -> as.POSIXct.default
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'DQ-report-example.Rmd' using rmarkdown
Warning: In com_segment_missingness: Study variables: "AGE_GROUP_0", "ARM_CIRC_0", "ARM_CIRC_DISC_0", "ARM_CUFF_0", "USR_VO2_0", "USR_BP_0", "EXAM_DT_0", "DEV_NO_0", "LAB_DT_0", "USR_SOCDEM_0", "INT_DT_0", "QUEST_DT_0" are not considered due to their VARIABLE_ROLE.
> com_segment_missingness(study_data = sd1, meta_data = md1, label_col = "LABEL", 
    threshold_value = 5, direction = "high", exclude_roles = c("secondary", 

Loading required package: lubridate

Attaching package: 'lubridate'

The following objects are masked from 'package:base':

    date, intersect, setdiff, union

Warning: In com_segment_missingness: Study variables: "AGE_GROUP_0", "ARM_CIRC_0", "ARM_CIRC_DISC_0", "ARM_CUFF_0", "USR_VO2_0", "USR_BP_0", "EXAM_DT_0", "DEV_NO_0", "LAB_DT_0", "USR_SOCDEM_0", "INT_DT_0", "QUEST_DT_0" are not considered due to their VARIABLE_ROLE.
> com_segment_missingness(study_data = sd2, meta_data = MD_TMP, 
    group_vars = "EXAM_MONTH", label_col = "LABEL", threshold_value = 1, 

Warning: In com_item_missingness: Setting suppressWarnings to its default FALSE
> com_item_missingness(study_data = sd1, meta_data = meta_data, 
    label_col = "LABEL", show_causes = TRUE, cause_label_df = code_labels, 

Warning: In con_limit_deviations: All variables with HARD_LIMITS in the metadata are used.
> con_limit_deviations(resp_vars = NULL, label_col = "LABEL", study_data = sd1, 
    meta_data = md1, limits = "HARD_LIMITS")

Quitting from lines 192-197 (DQ-report-example.Rmd) 
Error: processing vignette 'DQ-report-example.Rmd' failed with diagnostics:
unused argument (origin = 0)
--- failed re-building 'DQ-report-example.Rmd'

SUMMARY: processing the following file failed:
  'DQ-report-example.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'stubthat'
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Datastream DWE - now decommissioned by Refinitiv
    CRAN
Found the following significant warnings:
  init.c:29:43: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:30:45: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:31:46: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:33:51: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:34:52: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:36:43: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:37:43: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/datastructures.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'msa'
Running 'testthat.R' [2s/3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(daterangepicker)
  > 
  > test_check("daterangepicker")
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 54 ]
  
  == Failed tests ================================================================
  -- Failure (test-daterangepicker.R:158:3): daterangepicker ---------------------
  x[1] not identical to as.POSIXct(start - 10).
  Modes: list, numeric
  names for target but not for current
  Attributes: < names for current but not for target >
  Attributes: < Length mismatch: comparison on first 0 components >
  current is not list-like
  -- Failure (test-daterangepicker.R:159:3): daterangepicker ---------------------
  x[2] not identical to as.POSIXct(end).
  Modes: list, numeric
  names for target but not for current
  Attributes: < names for current but not for target >
  Attributes: < Length mismatch: comparison on first 0 components >
  current is not list-like
  
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 54 ]
  Error: Test failures
  Execution halted
Found the following significant warnings:
  char_date.c:8:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/date.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'SASxport'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ../include/external/random.h:53:52: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../include/external/random.h:54:62: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  randomBase.c:363:52: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  randomBase.c:381:62: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../include/misc/adaptiveRadixTree.h:54:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  adaptiveRadixTree.c:195:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  simd.c:53:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dbarts.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'dblog'
Found the following significant warnings:
  d011ch.c:41:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  d011ch.c:42:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  d011ch.c:44:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  d011ch.c:44:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  d011ch.c:45:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  d011ch.c:45:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  d011ch.c:531:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  d011ch.c:698:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  urnew010.c:36:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  urnew010.c:37:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dblcens.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Changes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  DCLEAR.cpp:54:5: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  DCLEAR.cpp:58:5: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  DCLEAR.cpp:71:5: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  DCLEAR.cpp:75:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DCLEAR.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'INLA'
Running examples in 'DClusterm-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DetectClustersModel
> ### Title: Detects clusters and computes their significance.
> ### Aliases: DetectClustersModel
> 
> ### ** Examples
> 
> library("DClusterm")
> data("NY8")
> 
> NY8$Observed <- round(NY8$Cases)
> NY8$Expected  <- NY8$POP8 * sum(NY8$Observed) / sum(NY8$POP8)
> 
> NY8$x <- coordinates(NY8)[, 1]
> NY8$y <- coordinates(NY8)[, 2]
> 
> 
> #Model to account for covariates
> ny.m1 <- glm(Observed ~ offset(log(Expected)) + PCTOWNHOME + PCTAGE65P +
+ PEXPOSURE, family = "poisson", data = NY8)
> 
> #Indices of areas that are possible cluster centres
> idxcl <- c(120, 12, 89, 139, 146)
> 
> #Cluster detection adjusting for covariates
> ny.cl1 <- DetectClustersModel(NY8,
+ thegrid = as.data.frame(NY8)[idxcl, c("x", "y")],
+ fractpop = 0.15, alpha = 0.05,
+ typeCluster = "S", R = NULL, model0 = ny.m1,
+ ClusterSizeContribution = "POP8")
Warning in showSRID(uprojargs, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum Unknown based on WGS84 ellipsoid in Proj4 definition
[1] 1 1
Error in .POSIXct(unclass(x) * 86400, tz = tz, ...) : 
  unused argument (origin = "1970-01-01")
Calls: DetectClustersModel -> as.POSIXct -> as.POSIXct.Date
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  ./difeq.h:65:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  difeq.c:123:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./dopri.h:208:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dopri.c:245:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dde.Rcheck/00install.out' for details.
Found the following significant warnings:
  DDHFm.c:101:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  DDHFm.c:122:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  DDHFm.c:199:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DDHFm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  matrix.c:13:48: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./matrix.h:13:48: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  postc0.c:13:48: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/deal.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./globals.h:139:49: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/deBif.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'defineR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write_define
> ### Title: Creates a define XML document
> ### Aliases: write_define
> 
> ### ** Examples
> 
> # Get temp directory
> tmp <- tempdir()
> 
> # Create demo metadata
> pth <- write_metadata(tmp, demo = TRUE)
> 
> # Generate define files
> res <- write_define(pth, tmp, view = FALSE)
Error in round(x$sec[n0], digits) : 
  non-numeric argument to mathematical function
Calls: write_define ... render.pdf_info -> paste0 -> as.character -> as.character.POSIXt
Execution halted
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'res.pdf' 'res1.jpg'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Changes from previous package DecompHoriuchi
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'smd_table.docx'
checkRd: (-1) lifetable.Rd:15: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
checkRd: (-1) scramb.Rd:44: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Running examples in 'dendRoAnalyst-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clim.twd
> ### Title: Calculating relative growth change during no-rain periods.
> ### Aliases: clim.twd
> 
> ### ** Examples
> 
> library(dendRoAnalyst)
> data(gf_nepa17)
> data(ktm_rain17)
> relative_dry_growth<-clim.twd(df=gf_nepa17, Clim=ktm_rain17, dailyValue='max', showPlot=TRUE)
Error in .POSIXct(x, tz, ...) : 
  unused argument (format = "%Y-%m-%d %H:%M:%S")
Calls: clim.twd -> <Anonymous> -> as.POSIXct -> as.POSIXct.default
Execution halted
checkRd: (-1) DendSer.Rd:50: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'Rdonlp2'
checkRd: (-1) discrimination.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) fitdmm.Rd:59: Escaped LaTeX specials: \$
Package suggested but not available for checking: 'Rdonlp2'
Found the following significant warnings:
  ./deque.h:73:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  constructor.c:43:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  deque.c:31:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dequer_native.c:9:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dequer.Rcheck/00install.out' for details.
checkRd: (-1) barriers.Rd:127: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
checkRd: (-1) geom_axis.Rd:10: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'RDCOMClient'
Package which this enhances but not available for checking: 'gurobi'
Found the following significant warnings:
  ./deSolve.h:95:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  R_init_deSolve.c:25:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  R_init_deSolve.c:60:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  deSolve_utils.c:76:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ex_CCL4model.c:51:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ex_CCL4model.c:74:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/deSolve.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  DetSel_init.c:12:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  GetData.c:33:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  SimulDiv.c:216:68: warning: while loop has empty body [-Wempty-body]
  SimulDiv.c:220:68: warning: while loop has empty body [-Wempty-body]
  SimulDiv.c:233:68: warning: while loop has empty body [-Wempty-body]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DetSel.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  void_dev.c:103:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  void_dev.c:182:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  void_dev.c:197:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/devoid.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./arms.h:50:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dfcomb.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) phihat.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) anova.dglm.Rd:41: Escaped LaTeX specials: \&
Package which this enhances but not available for checking: 'BayesianTools'
'LazyData' is specified without a 'data' directory
Running examples in 'DiagrammeR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_graph_series_info
> ### Title: Get information on a graph series
> ### Aliases: get_graph_series_info
> 
> ### ** Examples
> 
> # Create three graphs
> graph_1 <-
+   create_graph() %>%
+   add_path(n = 4)
> 
> graph_2 <-
+   create_graph() %>%
+   add_cycle(n = 5)
> 
> graph_3 <-
+   create_graph() %>%
+   add_star(n = 6)
> 
> # Create an empty graph series
> # and add the graphs
> series <-
+   create_graph_series() %>%
+   add_graph_to_graph_series(
+     graph = graph_1) %>%
+   add_graph_to_graph_series(
+     graph = graph_2) %>%
+   add_graph_to_graph_series(
+     graph = graph_3)
> 
> # Get information on the graphs in the series
> series %>% get_graph_series_info()
Error in .POSIXct(x, tz, ...) : unused argument (origin = "1970-01-01")
Calls: %>% ... get_graph_series_info -> as.POSIXct -> as.POSIXct.default
Execution halted
Running 'testthat.R' [84s/93s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(DiagrammeR)
  > 
  > suppressWarnings(RNGversion("3.5.0"))
  > test_check("DiagrammeR")
  [ FAIL 1 | WARN 8 | SKIP 0 | PASS 2122 ]
  
  == Failed tests ================================================================
  -- Error (test-series_info.R:91:3): graph series information can be obtained ---
  Error in `.POSIXct(x, tz, ...)`: unused argument (origin = "1970-01-01")
  Backtrace:
      x
   1. +-series %>% get_graph_series_info() at test-series_info.R:91:2
   2. \-DiagrammeR::get_graph_series_info(.)
   3.   +-base::as.POSIXct(...)
   4.   \-base::as.POSIXct.default(...)
  
  [ FAIL 1 | WARN 8 | SKIP 0 | PASS 2122 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'digiRhythm-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: resample_dgm
> ### Title: Change the sampling of a digiRhythm friendly dataset
> ### Aliases: resample_dgm
> 
> ### ** Examples
> 
> data("df516b_2", package = "digiRhythm")
> df <- df516b_2
> df <- remove_activity_outliers(df)
> new_sampling <- 30
> new_dgm <- resample_dgm(df, new_sampling)
Error in if ((new_sampling%%original_sampling) != 0) { : 
  missing value where TRUE/FALSE needed
Calls: resample_dgm
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'Actgram_diurnality_avg_activity.Rmd' using rmarkdown
Quitting from lines 30-36 (Actgram_diurnality_avg_activity.Rmd) 
Error: processing vignette 'Actgram_diurnality_avg_activity.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building 'Actgram_diurnality_avg_activity.Rmd'

--- re-building 'DFC_and_HP_and_changing_plots.Rmd' using rmarkdown
Quitting from lines 20-26 (DFC_and_HP_and_changing_plots.Rmd) 
Error: processing vignette 'DFC_and_HP_and_changing_plots.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building 'DFC_and_HP_and_changing_plots.Rmd'

--- re-building 'Loading_and_preprocessing_data_in_DigiRhythm.Rmd' using rmarkdown
trying URL 'https://raw.githubusercontent.com/nasserdr/digiRhythm_sample_datasets/main/516b_2.csv'
Content type 'text/plain; charset=utf-8' length 2655404 bytes (2.5 MB)
==================================================
downloaded 2.5 MB

Quitting from lines 118-120 (Loading_and_preprocessing_data_in_DigiRhythm.Rmd) 
Error: processing vignette 'Loading_and_preprocessing_data_in_DigiRhythm.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building 'Loading_and_preprocessing_data_in_DigiRhythm.Rmd'

SUMMARY: processing the following files failed:
  'Actgram_diurnality_avg_activity.Rmd'
  'DFC_and_HP_and_changing_plots.Rmd'
  'Loading_and_preprocessing_data_in_DigiRhythm.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [10s/11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(dint)
  > 
  > test_check("dint")
  [ FAIL 2 | WARN 0 | SKIP 2 | PASS 1258 ]
  
  == Skipped tests ===============================================================
  * empty test (1)
  * not yet (1)
  
  == Failed tests ================================================================
  -- Failure (test_date_xx.R:39:3): date_xx coercion to POSIXt works -------------
  as.POSIXlt(make_date_xx(2012)) not identical to as.POSIXlt(as.Date("2012-01-01")).
  Attributes: < Component "tzone": 1 string mismatch >
  -- Failure (test_date_xx.R:40:3): date_xx coercion to POSIXt works -------------
  as.POSIXct(make_date_xx(2012)) not identical to as.POSIXct(as.Date("2012-01-01")).
  Attributes: < Component "tzone": 1 string mismatch >
  
  [ FAIL 2 | WARN 0 | SKIP 2 | PASS 1258 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: 'rrelaxiv'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) disaggregate.Rd:56: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'INLA'
GNU make is a SystemRequirements.
checkRd: (-1) sammy.Rd:51: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'discreteMTP'
Unknown package 'discreteMTP' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) dataCensoring.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) dataLong.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) dataLongCompRisksTimeDep.Rd:130: Escaped LaTeX specials: \&
checkRd: (-1) dataLongMultiSpell.Rd:123: Escaped LaTeX specials: \&
checkRd: (-1) dataLongTimeDep.Rd:96: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) booter.Rd:68: Escaped LaTeX specials: \&
checkRd: (-1) ci.booted.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) pbooter.Rd:57: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'csim' 'xyz' 'xyz.sav' 'xyz.sav.comment'
Found the following files/directories:
  'csim.mean' 'csim.mean.comment'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./rfftw.h:34:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rfftw.c:149:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  util.c:231:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./zzz.h:10:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./zzz.h:44:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/diversitree.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'BOLTSSIRR'
Packages suggested but not available for checking: 'sendplot', 'HWxtest'
checkRd: (-1) fastDivPart.Rd:13: Escaped LaTeX specials: \_
checkRd: (-1) inCalc.Rd:26: Escaped LaTeX specials: \_
checkRd: (-1) inCalc.Rd:13: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  arms-R.c:83:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  arms-R.c:832:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:11:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:12:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:13:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:14:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:15:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:16:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:17:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:18:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:19:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:53:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dlm.c:54:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dlm.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Changes to previous versions
    Minor changes
    Fixes
    Previous Versions
checkRd: (-1) dlsem.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) unirootTest.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) unirootTest.Rd:20: Escaped LaTeX specials: \&
checkRd: (-1) unirootTest.Rd:26: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) dnr.Rd:12: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) block.catlg.Rd:61: Escaped LaTeX specials: \^ \^
Package which this enhances but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following calls to attach():
File 'doParallel/R/doParallel.R':
  attach(exportEnv)
See section 'Good practice' in '?attach'.
Found the following significant warnings:
  alive.c:200:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  alive.c:277:7: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/doRedis.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    New features
'LazyData' is specified without a 'data' directory
Found the following calls to attach():
File 'doSNOW/R/doSNOW.R':
  attach(exportEnv)
See section 'Good practice' in '?attach'.
Package suggested but not available for checking: 'OpenMPController'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'myfile.ps' 'myfile.svg'
Unknown package 'broomExtra' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  lr.c:27:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dparser.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) confint.dr4pl.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) gof-dr4pl.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) vcov.dr4pl.Rd:61: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'drawBox.pdf' 'drawCircle.pdf' 'drawCurve.pdf' 'drawLine.pdf'
  'drawPoint.pdf' 'drawSettingsExample.pdf' 'drawText.pdf' 'export.pdf'
'LazyData' is specified without a 'data' directory
checkRd: (-1) EDcomp.Rd:88: Escaped LaTeX specials: \&
checkRd: (-1) LL.4.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) W4.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) algae.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) anova.drc.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) deguelin.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) gompertz.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) hatvalues.drc.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) llogistic.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) modelFit.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) weibull1.Rd:67: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
Found the following significant warnings:
  dscore.cpp:135:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dscore.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'dsBaseClient'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Running examples in 'dtwSat-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotCostMatrix
> ### Title: Plotting paths
> ### Aliases: plotCostMatrix
> 
> ### ** Examples
> 
> log_fun = logisticWeight(-0.1, 100)
> ts = twdtwTimeSeries(MOD13Q1.ts.list)
> patt = twdtwTimeSeries(MOD13Q1.patterns.list)
> mat1 = twdtwApply(x=ts, y=patt, weight.fun=log_fun, keep=TRUE)
> 
> plotCostMatrix(mat1, matrix.name="costMatrix")
Error in data.frame(y.breaks, y.labels = names(y.labels)) : 
  arguments imply differing number of rows: 5, 6
Calls: plotCostMatrix -> do.call -> lapply -> FUN -> data.frame
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  nwout.c:49:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DynamicGP.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  init.c:15:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynaTree.Rcheck/00install.out' for details.
checkRd: (-1) dynaTree.Rd:265: Escaped LaTeX specials: \&
checkRd: (-1) dynaTree.Rd:270: Escaped LaTeX specials: \&
checkRd: (-1) relevance.dynaTree.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) sens.dynaTree.Rd:140: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'lle'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:40: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  adaodesolver.c:197:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  adaodesolver.c:407:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./adaodesolver.h:72:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./adaodesolver.h:106:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynr.Rcheck/00install.out' for details.
Found the following significant warnings:
  arms.c:105:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  arms.c:902:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynsurv.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  trait_model_rc.cpp:214:39: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/EasyABC.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    20181118
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'example_table1.csv' 'example_table1.txt' 'example_table2.csv'
  'example_table2.txt' 'example_table3.csv' 'example_table3.txt'
  'table1.csv' 'table2.csv' 'table2.txt' 'table3.txt' 'table4.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'gurobi'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    breaking changes
    major changes
    minor changes
    Internal
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  include/ecos_bb.h:161:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ecos_bb/ecos_bb_preproc.c:298:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ecos/include/ecos_bb.h:161:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ECOSolveR.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    TODO:
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'eval_test_LG_ROC.pdf' 'test.pdf'
Package suggested but not available for checking: 'eggCountsExtra'
GNU make is a SystemRequirements.
Found the following significant warnings:
  GB_zeroin.c:4:42: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  GB_zeroin.c:4:53: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  eha_zeroin.c:4:42: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  eha_zeroin.c:4:53: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  expreg.c:1:30: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  expreg.c:1:41: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  phexpreg.c:122:6: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  phreg.c:124:6: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/eha.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Running examples in 'EHR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: run_Build_PK_Oral
> ### Title: Build-PK-Oral Module
> ### Aliases: run_Build_PK_Oral
> 
> ### ** Examples
> 
> ## Data Generating Function
> mkdat <- function() {
+   npat <- 3
+   visits <- floor(runif(npat, min=2, max=6))
+   id <- rep(1:npat, visits)
+   dt_samp <- as.Date(sort(sample(700, sum(visits))), origin = '2019-01-01')
+   tm_samp <- as.POSIXct(paste(dt_samp, '10:00:00'), tz = 'UTC')
+   dt <- tm_samp + rnorm(sum(visits), 0, 1*60*60)
+   dose_morn <- sample(c(2.5,5,7.5,10), sum(visits), replace = TRUE)
+   conc <- round(rnorm(sum(visits), 1.5*dose_morn, 1),1)
+   ld <- dt - sample(10:16, sum(visits), replace = TRUE) * 3600
+   ld[rnorm(sum(visits)) < .3] <- NA
+   age <- rep(sample(40:75, npat), visits)
+   gender <- rep(sample(0:1, npat, replace=TRUE), visits)
+   weight <- rep(round(rnorm(npat, 180, 20)),visits)
+   hgb <- rep(rnorm(npat, 10, 2), visits)
+   data.frame(id, dt, dose_morn, conc, ld, age, gender, weight, hgb)
+ }
> 
> # Make raw data
> set.seed(30)
> dat <- mkdat()
> 
> #Process data without last-dose times
> run_Build_PK_Oral(x = dat,
+                   idCol = "id",
+                   dtCol = "dt",
+                   doseCol = "dose_morn",
+                   concCol = "conc",
+                   ldCol = NULL,
+                   first_interval_hours = 336,
+                   imputeClosest = NULL)
Error in round(x$sec[n0], digits) : 
  non-numeric argument to mathematical function
Calls: run_Build_PK_Oral -> as.character -> as.character.POSIXt
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'ehr_vignette_01_mxr.Rmd' using rmarkdown
--- finished re-building 'ehr_vignette_01_mxr.Rmd'

--- re-building 'ehr_vignette_02_str.Rmd' using rmarkdown
--- finished re-building 'ehr_vignette_02_str.Rmd'

--- re-building 'ehr_vignette_03_DoseBuilding.Rmd' using rmarkdown
--- finished re-building 'ehr_vignette_03_DoseBuilding.Rmd'

--- re-building 'ehr_vignette_04_Build_PK_Oral.Rmd' using rmarkdown
Quitting from lines 85-95 (ehr_vignette_04_Build_PK_Oral.Rmd) 
Error: processing vignette 'ehr_vignette_04_Build_PK_Oral.Rmd' failed with diagnostics:
non-numeric argument to mathematical function
--- failed re-building 'ehr_vignette_04_Build_PK_Oral.Rmd'

SUMMARY: processing the following file failed:
  'ehr_vignette_04_Build_PK_Oral.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./eicm.h:70:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/eicm.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) AuditErrors.Rd:40: Escaped LaTeX specials: \_
checkRd: (-1) compute.audit.errors.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) compute.stark.t.Rd:35: Escaped LaTeX specials: \_ \_
checkRd: (-1) find.q.Rd:44: Escaped LaTeX specials: \_
checkRd: (-1) find.q.Rd:56: Escaped LaTeX specials: \_
checkRd: (-1) stark.test.Rd:50: Escaped LaTeX specials: \$
checkRd: (-1) stark.test.Rd:101: Escaped LaTeX specials: \$ \$
checkRd: (-1) tri.audit.sim.Rd:47: Escaped LaTeX specials: \_
checkRd: (-1) tri.calc.sample.Rd:34: Escaped LaTeX specials: \_
checkRd: (-1) tri.sample.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:36: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:49: Escaped LaTeX specials: \$
checkRd: (-1) weight.function.Rd:16: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  emd-rubner.c:143:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  emd-rubner.c:153:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  emd-rubner.c:640:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/emdist.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) freudenstein_roth_func.Rd:29: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'osmar'
Running examples in 'EmiStatR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Delay
> ### Title: Delay function for time series
> ### Aliases: Delay
> ### Keywords: Delay
> 
> ### ** Examples
> 
> library(EmiStatR)
> data(P1)
> 
> P1_delayed <- Delay(P1 = P1, x = 500)
Error in .POSIXct(x, tz, ...) : 
  unused argument (format = "%Y-%m-%d %H:%M:%S")
Calls: Delay -> IsReg -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./utilities.h:7:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilities.c:14:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/emoa.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  conj_EMVS.cpp:68:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  conj_EMVS.cpp:77:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  conj_EMVS.cpp:135:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  ind_EMVS.cpp:67:11: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  ind_EMVS.cpp:77:11: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  ind_EMVS.cpp:124:11: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/EMVS.Rcheck/00install.out' for details.
checkRd: (-1) encode.character.Rd:22: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'file.path(temp_dir, gp2.csv)'
'LazyData' is specified without a 'data' directory
checkRd: (-1) check_several.Rd:34: Escaped LaTeX specials: \#
checkRd: (-1) check_several.Rd:35: Escaped LaTeX specials: \#
Found the following files/directories:
  'Environmental variables.csv' 'Inf.txt' 'List of species.csv' 'Mean
  overlap among taxa.csv' 'Overlap among taxa.csv' 'Pointsize.dat'
  'Polar coordinates.csv'
'LazyData' is specified without a 'data' directory
checkRd: (-1) calibrate.Rd:151: Escaped LaTeX specials: \&
checkRd: (-1) cdfCompareCensored.Rd:299: Escaped LaTeX specials: \&
checkRd: (-1) detectionLimitCalibrate.Rd:149: Escaped LaTeX specials: \&
checkRd: (-1) ecdfPlotCensored.Rd:169: Escaped LaTeX specials: \&
checkRd: (-1) egammaAltCensored.Rd:344: Escaped LaTeX specials: \&
checkRd: (-1) egammaCensored.Rd:340: Escaped LaTeX specials: \&
checkRd: (-1) elnormAltCensored.Rd:694: Escaped LaTeX specials: \&
checkRd: (-1) elnormCensored.Rd:270: Escaped LaTeX specials: \&
checkRd: (-1) enormCensored.Rd:852: Escaped LaTeX specials: \&
checkRd: (-1) enparCensored.Rd:343: Escaped LaTeX specials: \&
checkRd: (-1) enparCensored.Rd:358: Escaped LaTeX specials: \&
checkRd: (-1) epoisCensored.Rd:354: Escaped LaTeX specials: \&
checkRd: (-1) ppointsCensored.Rd:406: Escaped LaTeX specials: \&
checkRd: (-1) predIntGammaSimultaneous.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) predIntGammaSimultaneous.Rd:171: Escaped LaTeX specials: \&
checkRd: (-1) predIntLnormSimultaneous.Rd:136: Escaped LaTeX specials: \&
checkRd: (-1) predIntLnormSimultaneous.Rd:137: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneous.Rd:204: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneous.Rd:205: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneousK.Rd:277: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneousK.Rd:278: Escaped LaTeX specials: \&
checkRd: (-1) qqPlotCensored.Rd:261: Escaped LaTeX specials: \&
checkRd: (-1) twoSampleLinearRankTest.Rd:276: Escaped LaTeX specials: \&
checkRd: (-1) twoSampleLinearRankTestCensored.Rd:324: Escaped LaTeX specials: \&
checkRd: (-1) twoSampleLinearRankTestCensored.Rd:331: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Net1-fromR.inp'
GNU make is a SystemRequirements.
checkRd: (-1) risk.display.rd:98: Escaped LaTeX specials: \$
Package suggested but not available for checking: 'epidict'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_state.h:33:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:380:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:381:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:382:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_wtstate.h:32:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:585:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:586:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:587:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/EpiModel.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'EpiSoon'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'episcan_1geno_cc.txt' 'episcan_1geno_quant.txt'
  'episcan_2geno_cc.txt' 'episcan_2geno_quant.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'taskscheduleR'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  EqMult.cpp:542:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/equateMultiple.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  directed.cpp:65:30: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:66:30: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:67:30: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:96:28: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:97:28: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:121:28: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:256:28: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:257:28: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:258:28: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:269:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:291:24: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:292:24: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:307:24: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:367:24: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:368:24: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  directed.cpp:369:24: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  undirected.cpp:141:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ergmclust.Rcheck/00install.out' for details.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_state.h:33:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:380:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:381:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:382:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_wtstate.h:32:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:585:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:586:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:587:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ergm.count.Rcheck/00install.out' for details.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_state.h:33:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:380:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:381:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:382:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_wtstate.h:32:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:585:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:586:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:587:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ergm.ego.Rcheck/00install.out' for details.
Found the following significant warnings:
  induced_submat.cpp:25:11: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  induced_submat.cpp:27:11: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ergmito.Rcheck/00install.out' for details.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_state.h:33:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:380:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:381:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:382:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_wtstate.h:32:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:585:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:586:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:587:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ergm.rank.Rcheck/00install.out' for details.
Found the following significant warnings:
  ../inst/include/ergm_state.h:33:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  MPLE.c:28:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ergm_omp.c:36:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ergm_state.c:107:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../inst/include/ergm_wtstate.h:32:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ergm_wtstate.c:107:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:34:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:35:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:36:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:40:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ergm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) aic.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) aic.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:64: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) calculateGLR.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) Snoring.Rd:21: Escaped LaTeX specials: \&
Found the following files/directories:
  'sample .nwk'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ExactData'
checkRd: (-1) exams2sakai.Rd:152: Escaped LaTeX specials: \&
checkRd: (-1) exams2blackboard.Rd:152: Escaped LaTeX specials: \&
checkRd: (-1) exams2qti12.Rd:186: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cec2013'
checkRd: (-1) ccF.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:29: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  expint.c:536:52: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  expint.c:604:61: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/expint.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Running examples in 'expss-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: net
> ### Title: Add subtotal to a set of categories
> ### Aliases: net subtotal tab_net_cells tab_net_cols tab_net_rows
> ###   tab_subtotal_cells tab_subtotal_cols tab_subtotal_rows hide unhide
> 
> ### ** Examples
> 
> ol = c(1:7, 99)
> var_lab(ol) = "Liking"
> val_lab(ol)  = num_lab("
+                      1 Disgusting
+                      2 Very Poor
+                      3 Poor
+                      4 So-so
+                      5 Good
+                      6 Very good
+                      7 Excellent
+                      99 Hard to say
+                      ")
>                      
> cro(subtotal(ol, BOTTOM = 1:3, TOP = 6:7, position = "top"))
Error in set_val_lab.default(x, value, add = FALSE) : 
  'set_val_lab' - duplicated values in labels: 1 1 2 2 3 3 4 5 6 6 7 7 99
Calls: cro ... net.default -> val_lab<- -> set_val_lab -> set_val_lab.default
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) sp500.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) outlierPlot.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) outlierPlot.Rd:32: Escaped LaTeX specials: \$
Package suggested but not available for checking: 'exuberdata'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Functions and objects (details)
checkRd: (-1) codePasses.Rd:64: Escaped LaTeX specials: \#
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [23s/26s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(fable.prophet)
  Loading required package: Rcpp
  Loading required package: fabletools
  > 
  > test_check("fable.prophet")
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 11 ]
  
  == Failed tests ================================================================
  -- Failure (test-prophet.R:8:3): Prophet simple --------------------------------
  default_mdl$seasonalities has length 0, not length 1.
  -- Failure (test-prophet.R:9:3): Prophet simple --------------------------------
  default_mdl$changepoints has length 0, not length 25.
  
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 11 ]
  Error: Test failures
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'intro.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'lubridate'

The following object is masked from 'package:tsibble':

    interval

The following objects are masked from 'package:base':

    date, intersect, setdiff, union

`summarise()` has grouped output by 'month'. You can override using the
`.groups` argument.
Quitting from lines 100-101 (intro.Rmd) 
Error: processing vignette 'intro.Rmd' failed with diagnostics:
Problem while computing `cmp = map(.fit, components)`.
Caused by error in `UseMethod()`:
! no applicable method for 'components' applied to an object of class "null_mdl"
--- failed re-building 'intro.Rmd'

SUMMARY: processing the following file failed:
  'intro.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Bogota.tex' 'DogBreeds1.tex'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    minor changes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  chli.c:5:48: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fame.Rcheck/00install.out' for details.
File 'fame/R/windows/zzz.R':
  .onLoad calls:
    packageStartupMessage("FAME environment variable not set; assuming ",     defaultDir)
    packageStartupMessage("FAME directory ", fameDir, " not found.\n",     "If you have FAME installed, specify it's location ", "via the FAME environment variable.\n",     "Otherwise, this package is pretty useless.\n")

See section 'Good practice' in '?.onAttach'.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ezprof.c:16:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fanc.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'OpenML'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./lu.h:44:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lu.c:828:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fastclime.Rcheck/00install.out' for details.
Found the following files/directories:
  'default5.eps'
Package suggested but not available for checking: 'crrp'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  pixelfn.cpp:15:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  pixelfn.cpp:34:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  pixelfn.cpp:41:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fasterize.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'coxKM'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:8:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fastmap.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File 'fastmatch/libs/fastmatch.so':
  Found non-API call to R: 'match5'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) FastPCS-package.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) FastPCS.Rd:104: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  code.cpp:64:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fastqq.Rcheck/00install.out' for details.
checkRd: (-1) Scent.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) Traffic.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) Lemons.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) Lemons.Rd:5: Escaped LaTeX specials: \&
.run: no visible binding for global variable 'init'
.run: no visible global function definition for 'init'
.run: no visible binding for global variable 'run'
Undefined global functions or variables:
  init run
Note: information on .o files is not available
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:12:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:13:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:14:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:15:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:16:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:17:53: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:18:49: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:19:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:20:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:21:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:22:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fastText.Rcheck/00install.out' for details.
Found the following significant warnings:
  clean.cc:18:10: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  clean.cc:29:10: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  clean.cc:70:25: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  clean.cc:74:25: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fastTextR.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'NNLM'
GNU make is a SystemRequirements.
Found the following significant warnings:
  gld.c:439:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fBasics.Rcheck/00install.out' for details.
Found the following significant warnings:
  fbati_init.c:35:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  fbati_init.c:36:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  fbati_init.c:37:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  fbati_init.c:39:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  fbati_init.c:50:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  fbati_init.c:51:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  fbati_init.c:52:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  fbati_init.c:53:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fbati.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  func.cpp:124:17: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fclust.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'test2delete.txt' 'test2delete2_values.txt' 'test2delete_values.txt'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  '.Rprofile'
Unexported objects imported by ':::' calls:
  'fdapace:::GCVLwls1D1' 'fdapace:::GetSmoothedMeanCurve'
  'fdapace:::HandleNumericsAndNAN' 'fdapace:::interp2lin'
  See the note in ?`:::` about the use of this operator.
Found the following significant warnings:
  C_Libraries/triangle.h:287:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  C_Libraries/triangle.h:288:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  C_Libraries/triangle.c:3295:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  C_Libraries/triangle.c:4914:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  C_Libraries/triangle.c:13250:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fdaPDE.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
checkRd: (-1) summary.fdata.comp.Rd:44: Escaped LaTeX specials: \&
Found the following math rendering problems:
fregre.plm.Rd:86-87: Undefined control sequence: \emph in y =\emph{r(X)}+\sum_{j=...
metric.kl.Rd:45-46: Undefined control sequence: \- in \left|f_i(t)\-g_i(t) \right|\...
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'vert.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'treesAll.txt'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./vector_converter.h:249:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  ./vector_converter.h:259:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/FeatureHashing.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) morse.Rd:40: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:23: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) regMin.Rd:24: Escaped LaTeX specials: \#
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    New Stuff
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fermicatsR.Rd:31: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  combNWrapper.c:49:27: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  combNWrapper.c:81:27: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/FFD.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./ff.h:34:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./r_ff.h:62:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./r_ff.h:63:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./r_ff.h:64:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  r_ff.c:289:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  r_ff.c:298:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  r_ff.c:309:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ff.Rcheck/00install.out' for details.
checkRd: (-1) dimnames.ff.rd:18: Escaped LaTeX specials: \_
checkRd: (-1) ff.rd:120: Escaped LaTeX specials: \_
checkRd: (-1) names.ff.rd:22: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./f2c.h:185:49: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:186:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:187:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:188:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:189:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:189:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:190:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:191:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:192:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:193:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:194:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:195:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/FGSG.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'MicrobeDS'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'AH_genepop.txt' 'AH_popname.txt' 'JSM_MS_freq.txt'
  'JSM_MS_genepop.txt' 'JSM_genepop_clipped_both.txt'
  'JSM_genepop_clipped_maf.txt' 'JSM_genepop_clipped_name.txt'
  'JSM_mtDNA_freq.txt' 'JSM_popname.txt' 'result_DJ.csv'
  'result_EBDJ.csv' 'result_EBFST.csv' 'result_EBFST_mtDNA.csv'
  'result_EBGstH.csv' 'result_GstH.csv' 'result_GstN.csv'
  'result_GstNC.csv' 'result_thetaWCpair.csv'
checkRd: (-1) bitspec.Rd:8: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fitmixEM.Rd:51: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
  ...
--- re-building 'FIT.Rmd' using rmarkdown
Quitting from lines 221-224 (FIT.Rmd) 
Error: processing vignette 'FIT.Rmd' failed with diagnostics:
unused argument (origin = "1970-1-1")
--- failed re-building 'FIT.Rmd'

SUMMARY: processing the following file failed:
  'FIT.Rmd'

Error: Vignette re-building failed.
Execution halted
Packages suggested but not available for checking:
  'benchden', 'reliaR', 'STAR'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'fivethirtyeightdata'
Package unavailable to check Rd xrefs: 'fivethirtyeightdata'
Error(s) in re-building vignettes:
  ...
--- re-building 'spot-rate-curve-indexing.Rmd' using rmarkdown
Quitting from lines 134-135 (spot-rate-curve-indexing.Rmd) 
Error: processing vignette 'spot-rate-curve-indexing.Rmd' failed with diagnostics:
invalid class "SpotRateCurve" object: FALSE
--- failed re-building 'spot-rate-curve-indexing.Rmd'

--- re-building 'spot-rate-curve-interpolation.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:fixedincome':

    first, last

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

--- finished re-building 'spot-rate-curve-interpolation.Rmd'

--- re-building 'spot-rate-curve-plotting.Rmd' using rmarkdown
Quitting from lines 83-86 (spot-rate-curve-plotting.Rmd) 
Error: processing vignette 'spot-rate-curve-plotting.Rmd' failed with diagnostics:
'to' must be a finite number
--- failed re-building 'spot-rate-curve-plotting.Rmd'

SUMMARY: processing the following files failed:
  'spot-rate-curve-indexing.Rmd' 'spot-rate-curve-plotting.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
checkRd: (-1) etable.Rd:494: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fk_regression.Rd:32: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) flashClust.Rd:92: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) cclust.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) randIndex.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) vacmot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) vacmot.Rd:28: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  intGL_NC.c:330:24: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/flexrsurv.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  float_native.c:40:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  float_native.c:41:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  float_native.c:53:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  machine.c:7:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  NA.c:20:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  NA.c:76:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  NA.c:88:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/float.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
GNU make is a SystemRequirements.
Found the following files/directories:
  'flux.CH4.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) pseudoOptim.Rd:27: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) write.AFNI.Rd:16: Escaped LaTeX specials: \_
checkRd: (-1) write.AFNI.Rd:17: Escaped LaTeX specials: \_
checkRd: (-1) write.AFNI.Rd:20: Escaped LaTeX specials: \_
checkRd: (-1) write.AFNI.Rd:22: Escaped LaTeX specials: \_
Found the following significant warnings:
  BDSTest.c:84:8: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  BDSTest.c:227:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fNonlinear.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
BugReports field is not a suitable URL but contains an email address:
   use the Contact field instead
checkRd: (-1) forecTheta-package.Rd:11: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Previous versions (not tagged nor released)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  simulations_1.5.cpp:322:18: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  simulations_1.5.cpp:418:18: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  simulations_1.5.cpp:526:18: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/FORTLS.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'Rsocp', 'Rnlminb2', 'Rdonlp2'
Found the following significant warnings:
  ./fracdiff.h:39:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  fdcore.c:31:50: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fracdiff.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'RandomFields'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) MultiAsset.Rd:26: Escaped LaTeX specials: \&
Found the following significant warnings:
  main.cpp:32:9: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/free.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) CatalogueAccessors.Rd:249: Escaped LaTeX specials: \^ \^
checkRd: (-1) FrF2.Rd:574: Escaped LaTeX specials: \^
checkRd: (-1) FrF2.Rd:629: Escaped LaTeX specials: \^ \^
checkRd: (-1) IAPlot.Rd:87: Escaped LaTeX specials: \$
checkRd: (-1) block.Rd:121: Escaped LaTeX specials: \^
checkRd: (-1) block.Rd:150: Escaped LaTeX specials: \^ \^
checkRd: (-1) blockpick.Rd:114: Escaped LaTeX specials: \^ \^
Packages suggested but not available for checking: 'dggrids', 'INLA'
Installation failed.
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fRLR.Rcheck/00install.out' for details.
Unknown package 'frm' in Rd xrefs
Unknown package 'frm' in Rd xrefs
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'extraTrees', 'foba', 'nodeHarvest', 'obliqueRF', 'relaxo', 'rrlda'
Found the following significant warnings:
  init.c:20:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/FSelectorRcpp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mean.fts.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) median.fts.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) plot.fm.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) residuals.fm.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) sd.fts.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) var.fts.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) Spec_compare_localize_freq.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) Spec_compare_localize_freq.Rd:52: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'completeTrial_byArm_eventPriorRateC3=0.001_eventPriorRateT1=0_eventPriorRateT2=0_eventPriorWt=0.5.RData'
  'completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.2.RData'
  'completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.4.RData'
  'completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.6.RData'
  'completeTrial_pooled_eventPriorRate=0.001_eventPriorWt=0.5.RData'
  'completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.2.RData'
  'completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.4.RData'
  'completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.6.RData'
  'rcdf_byArm_arm=T1_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03.pdf'
  'rcdf_pooled_eventPriorRate=0.06.pdf'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [2s/2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(fuzzyreg)
  > 
  > test_check("fuzzyreg")
  [ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ]
  
  == Failed tests ================================================================
  -- Failure (test_correctSolution.R:43:3): correct MOFLR ------------------------
  fuzzylm(y ~ x, fuzzydat$nas, "moflr", "xl", , "yl")$coef not equivalent to matrix(c(6.07, 7.84, 7.84, 1.67, 0.48, 0.48), ncol = 3, byrow = TRUE).
  2/6 mismatches (average diff: 0.71)
  [1] 7.02 - 6.07 ==  0.947
  [2] 1.20 - 1.67 == -0.473
  
  [ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  proglikelihood.cc:279:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  proglikelihood.cc:368:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  proglikelihood.cc:371:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gadget2.Rcheck/00install.out' for details.
Running examples in 'gainML-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: analyze.gain
> ### Title: Analyze Potential Gain from Passive Device Installation on WTGs
> ###   by Using a Machine Learning-Based Tool
> ### Aliases: analyze.gain
> 
> ### ** Examples
> 
> df.ref <- with(wtg, data.frame(time = time, turb.id = 1, wind.dir = D,
+  power = y, air.dens = rho))
> df.ctrb <- with(wtg, data.frame(time = time, turb.id = 2, wind.spd = V,
+  power = y))
> df.ctrn <- df.ctrb
> df.ctrn$turb.id <- 3
> 
> # For Full Sector Analysis
> res <- analyze.gain(df.ref, df.ctrb, df.ctrn, p1.beg = '2014-10-24',
+  p1.end = '2014-10-25', p2.beg = '2014-10-25', p2.end = '2014-10-26',
+  ratedPW = 1000, AEP = 300000, pw.freq = pw.freq, k.fold = 2)
Error in .POSIXct(x, tz, ...) : 
  unused argument (format = "%Y-%m-%d %H:%M:%S")
Calls: analyze.gain -> arrange.data -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  gamlr.c:87:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:12:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gamlr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LGAclaims.Rd:30: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:34: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:35: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:36: Escaped LaTeX specials: \_
Found the following significant warnings:
  loessc.c:74:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  loessc.c:76:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  loessc.c:78:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  loessc.c:80:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  loessc.c:82:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  loessc.c:84:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  loessc.c:86:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  loessc.c:88:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  loessc.c:90:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gam.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) GSE.Test.Main.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) meyer.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) mia.Rd:39: Escaped LaTeX specials: \#
Found the following significant warnings:
  genope.cpp:963:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  genope.cpp:1400:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/GA.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'checkdata.csv' 'gbmforest.sas'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) fitgbd.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) fitgld.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) gb.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) gbd.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) gld.Rd:36: Escaped LaTeX specials: \&
Package in Depends field not imported from: 'tools'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  'tools:::.Rd_get_argument_names' 'tools:::RdTags' 'tools:::fetchRdDB'
  See the note in ?`:::` about the use of this operator.
checkRd: (-1) estprops.Rd:40: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'gputools'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  proj_conf_test.c:4:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gdalcubes/src/warp.h:52:19: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gdalcubes.Rcheck/00install.out' for details.
Found the following calls to attach():
File 'g.data/R/g.data.attach.R':
  attach(NULL, pos, basename(dir))
See section 'Good practice' in '?attach'.
Found the following HTML validation problems:
gdistance.html:23:4: Warning: <img> attribute "align" not allowed for HTML5
Found the following significant warnings:
  gdpc_auxfunc.cpp:79:11: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gdpc.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'gdxrrw'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot_summary.Rd:14: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'genderdata'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
checkRd: (-1) SandP500.Rd:4: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  MatingPrograms.cpp:31:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  MatingPrograms.cpp:36:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  MatingPrograms.cpp:42:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  MatingPrograms.cpp:47:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  MatingPrograms.cpp:52:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  MatingPrograms.cpp:57:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  MatingPrograms.cpp:62:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  MatingPrograms.cpp:67:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  MatingPrograms.cpp:72:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/GenomicMating.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  init.c:14:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/GenSA.Rcheck/00install.out' for details.
Found the following significant warnings:
  arms.c:99:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  arms.c:900:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/genscore.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  gensvm/include/gensvm_rand.h:44:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gensvm/src/gensvm_rand.c:105:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gensvm/src/gensvm_rand.c:112:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gensvm/src/gensvm_rand.c:153:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gensvm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  geodesic.c:57:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/geodist.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:5:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:6:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:7:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/geohashTools.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'geomarocdata'
'LazyData' is specified without a 'data' directory
Warning in file.exists(file) :
  unable to translate '<?xml version='1.0' encoding='UTF-8'?>
<?xml-stylesheet type="text/xsl" href="media-types.xsl"?>
<?xml-model href="media-types.rng" schematypens="http://relaxng.org/ns/structure/1.0" ?>
<registry xmlns="http://www.iana.org/assignments" id="media-types"...' to native encoding

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  GeoModels_init.c:33:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  GeoModels_init.c:34:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Utility.c:1057:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Utility.c:1144:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/GeoModels.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  dist.c:117:57: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/geosphere.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
Found the following calls to data() loading into the global environment:
File 'geotools/R/zzz.R':
  data(fr_geo_rad)
See section 'Good practice' in '?data'.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  getip_native.c:9:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ip_internal.c:71:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ip_internal.c:292:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/getip.Rcheck/00install.out' for details.
checkRd: (-1) getopt.Rd:60: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:11:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gettz.Rcheck/00install.out' for details.
checkRd: (-1) gexp.Rd:123: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'RGtk2'
checkRd: (-1) estGF.Rd:106: Escaped LaTeX specials: \&
checkRd: (-1) estGF.Rd:107: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    earlier versions
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following assignments to the global environment:
File 'ggExtra/R/ggMarginalGadget.R':
  assign(plotname, eval(parse(text = origPlot)), envir = .GlobalEnv)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [2s/3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  > library("GGIRread")
  > test_check("GGIRread")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 72 ]
  
  == Failed tests ================================================================
  -- Error (test_readGenea.R:15:3): readGenea reads data from file correctly -----
  Error in `.POSIXct(x, tz, ...)`: unused argument (origin = "1970-01-01")
  Backtrace:
      x
   1. \-GGIRread::readGenea(...) at test_readGenea.R:15:2
   2.   +-base::as.POSIXct(start, origin = "1970-01-01", tz = "Europe/London")
   3.   \-base::as.POSIXct.default(start, origin = "1970-01-01", tz = "Europe/London")
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 72 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) boot_eip.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) constrained.Rd:93: Escaped LaTeX specials: \&
checkRd: (-1) constrained.Rd:37: Escaped LaTeX specials: \&
Found the following HTML validation problems:
ggmulti-package.html:23:4: Warning: <img> attribute "align" not allowed for HTML5
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ggOceanMapsData'
'LazyData' is specified without a 'data' directory
checkRd: (-1) diamonds.Rd:10: Escaped LaTeX specials: \$ \$
Found the following HTML validation problems:
ggplot2-package.html:23:4: Warning: <img> attribute "align" not allowed for HTML5
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    History
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'lixoftConnectors'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Bug fixes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  repel_boxes.cpp:183:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  repel_boxes.cpp:193:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ggrepel.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    * Changes all data options to .data to decrease possibility of column naming overlap
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Initial Release (0.1.0)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Win CRAN check results - R Windows
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Pictures_analyzed' 'cutoff_vals' 'cutoff_vals1' 'gina_cran.JPG'
Unknown package 'IC2' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) randPIT.Rd:52: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) starship.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) starship.adaptivegrid.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) starship.adaptivegrid.Rd:54: Escaped LaTeX specials: \&
checkRd: (-1) starship.adaptivegrid.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) starship.obj.Rd:25: Escaped LaTeX specials: \&
Found the following significant warnings:
  gld.rs.fx.c:62:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gld.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'mlr3proba'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  phytr.c:419:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:1348:69: warning: for loop has empty body [-Wempty-body]
  phytr.c:1650:46: warning: for loop has empty body [-Wempty-body]
  phytr.c:2327:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3266:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3268:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3298:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3302:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3307:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3310:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3313:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3316:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3319:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3322:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  phytr.c:3325:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glinvci.Rcheck/00install.out' for details.
Found the following significant warnings:
  emgllm.c:40:7: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  emgllm.c:51:24: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  emgllm.c:68:62: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  emgllm.c:95:20: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  emgllm.c:99:30: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  emgllm.c:99:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  emgllm.c:106:28: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  emgllm.c:106:34: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  emgllm.c:152:30: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  emgllm.c:152:36: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gllm.Rcheck/00install.out' for details.
checkRd: (-1) glmc.Rd:232: Escaped LaTeX specials: \&
checkRd: (-1) glmc.Rd:241: Escaped LaTeX specials: \&
checkRd: (-1) glmc.control.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) glmc.control.Rd:31: Escaped LaTeX specials: \$
checkRd: (-1) glmc.summaries.Rd:79: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  GB_zeroin.c:4:42: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  GB_zeroin.c:4:53: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmmML.Rcheck/00install.out' for details.
checkRd: (-1) basal.Rd:32: Escaped LaTeX specials: \_
checkRd: (-1) basal.Rd:33: Escaped LaTeX specials: \_ \_ \_
Found the following significant warnings:
  pb.c:27:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmnet.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) coef.glmulti.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) consensus.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) getfit.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-class.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti.Rd:99: Escaped LaTeX specials: \&
checkRd: (-1) summary.glmulti.Rd:72: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'cplexAPI'
Malformed Description field: should contain one or more complete sentences.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  ./extract_matrix.h:89:24: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gmp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) replace_in_file.Rd:40: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) barleyHeights.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) barleyHeights.Rd:22: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) BVDWSTOXX.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:16: Escaped LaTeX specials: \& \&
checkRd: (-1) BVDWSTOXX.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:37: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Found the following significant warnings:
  R_register_native.c:11:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  R_register_native.c:12:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gower.c:60:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gower.c:72:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gower.c:83:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gower.Rcheck/00install.out' for details.
checkRd: (-1) rotations.Rd:103: Escaped LaTeX specials: \^
Package suggested but not available for checking: 'gvcm.cat'
Unknown package 'gvcm.cat' in Rd xrefs
Found the following significant warnings:
  engine.c:57:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  engine.c:111:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  options.c:3:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gpg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) barplot2.Rd:219: Escaped LaTeX specials: \_
checkRd: (-1) colorpanel.Rd:31: Escaped LaTeX specials: \#
checkRd: (-1) qqnorm.aov.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) venn.Rd:59: Escaped LaTeX specials: \_
checkRd: (-1) GPoM.FDLyapu-package.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) Plague.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) lyapFDGrond.Rd:66: Escaped LaTeX specials: \&
checkRd: (-1) lyapFDGrond.Rd:68: Escaped LaTeX specials: \&
checkRd: (-1) lyapFDGrond.Rd:69: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  U_NZentries.cpp:27:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/GPvecchia.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) corrApp.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) crdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) descApp.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) layoutApp.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) rbdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) ttApp.Rd:43: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) gen_graph_indep.Rd:126: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mlGraphicalVAR.Rd:79: Escaped LaTeX specials: \~
Packages suggested but not available for checking:
  'taxstats', 'taxstats1516'
Found the following significant warnings:
  Offset.c:3:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:12:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  omp_diagnose.c:5:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  omp_diagnose.c:18:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/grattan.Rcheck/00install.out' for details.
Found the following significant warnings:
  _u_rowsums_etc.c:7:5: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  _u_rowsums_etc.c:7:11: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:5:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:5:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:55:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:55:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:178:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:178:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:448:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:448:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:613:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  api_array_tab_X.cpp:613:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  init.c:17:49: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gRbase.Rcheck/00install.out' for details.
Found the following significant warnings:
  init.c:11:46: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gRc.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
  ...
--- re-building 'printCrudeAndAdjustedModel.Rmd' using rmarkdown
Loading required package: forestplot
Loading required package: grid
Loading required package: checkmate
Loading required package: abind
Loading required package: Gmisc
Loading required package: Rcpp
Loading required package: htmlTable
Loading required package: lattice
Loading required package: survival
Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

Quitting from lines 70-77 (printCrudeAndAdjustedModel.Rmd) 
Error: processing vignette 'printCrudeAndAdjustedModel.Rmd' failed with diagnostics:
could not find function "%>%"
--- failed re-building 'printCrudeAndAdjustedModel.Rmd'

--- re-building 'timeSplitter.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:Hmisc':

    src, summarize

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning in coxph(formula = Surv(Start_time, Stop_time, status == "Died from melanoma") ~  :
  a variable appears on both the left and right sides of the formula
Warning in coxph(formula = Surv(Start_time, Stop_time, status == "Died from melanoma") ~  :
  a variable appears on both the left and right sides of the formula
--- finished re-building 'timeSplitter.Rmd'

SUMMARY: processing the following file failed:
  'printCrudeAndAdjustedModel.Rmd'

Error: Vignette re-building failed.
Execution halted
Problems with news in 'NEWS.md':
No news entries found.
accrualReport: multiple local function definitions for 'gg' with
  different formal arguments
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
Found the following significant warnings:
  _utils_mat.c:5:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  _utils_mat.c:5:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./_utils_mat.h:5:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./_utils_mat.h:5:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gRim.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'p1_20up-vs-p2_25up_in_str1.txt' 'p1_20up-vs-p2_25up_in_str2.txt'
  'p2_25up-vs-p1_20up_in_str1.txt' 'p2_25up-vs-p1_20up_in_str2.txt'
  's0_20up.txt' 's0_30up.txt' 's0_f2up.txt' 'strs.vec_01mx.txt'
  'strs.vec_02mx.txt' 'strs.vec_03mx.txt' 'strs.vec_04mx.txt'
  'strs.vec_05mx.txt' 'strs.vec_06mx.txt' 'strs.vec_30up.txt'
  'strs.vec_50up.txt' 'strs.vec_f2up.txt' 'uni_p1_20up-p2_25up.txt'
checkRd: (-1) fmddisc.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:46: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:54: Escaped LaTeX specials: \&
Found the following files/directories:
  'FMD mag discontinuities_disc.png' 'FMD mag
  discontinuities_disc1.res' 'FMD mag discontinuities_disc2.res'
  'IDYLLWILD_bvmed.png' 'IDYLLWILD_fig.png' 'Schuster's
  diagram_schu.png' 'hour.res'
Found the following significant warnings:
  cov-em.cpp:169:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  cov-em.cpp:174:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/GSE.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  smolyak.c:58:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  smolyak.c:79:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  smolyak.c:227:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  smolyak.c:477:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gss.Rcheck/00install.out' for details.
Found the following significant warnings:
  nsearch.c:8:16: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gstat.Rcheck/00install.out' for details.
checkRd: (-1) fit.variogram.Rd:91: Escaped LaTeX specials: \&
checkRd: (-1) fit.variogram.gls.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) gstat.Rd:117: Escaped LaTeX specials: \&
checkRd: (-1) hscat.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) krige.Rd:163: Escaped LaTeX specials: \&
checkRd: (-1) krigeST.Rd:85: Escaped LaTeX specials: \&
checkRd: (-1) meuse.all.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) predict.gstat.Rd:155: Escaped LaTeX specials: \&
checkRd: (-1) variogram.Rd:163: Escaped LaTeX specials: \&
checkRd: (-1) variogramST.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) vgm.Rd:116: Escaped LaTeX specials: \&
Found the following significant warnings:
  wrappers.c:67:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gsw.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) gsym.point.Rd:143: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Warning: unable to re-encode 'guiplotServer.R' lines 318, 319
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/guiplot.Rcheck/00install.out' for details.
Found the following files/directories:
  'RRprof.out'
'LazyData' is specified without a 'data' directory
checkRd: (-1) GUTS-package.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) GUTS.Rd:201: Escaped LaTeX specials: \&
checkRd: (-1) GUTS.Rd:209: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) luzdat.Rd:21: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following files/directories:
  'testdata1.txt' 'testdata2.txt' 'testdata3.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [9s/10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(hablar)
  > test_check("hablar")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 414 ]
  
  == Failed tests ================================================================
  -- Error (test.convert.R:118:3): from Date -------------------------------------
  <dplyr:::mutate_error/rlang_error/error/condition>
  Error in `mutate(.tbl, !!!funs)`: Problem while computing `a = (structure(function (..., .x = ..1, .y =
  ..2, . = ..1) ...`.
  Caused by error in `.POSIXct()`:
  ! unused argument (origin = "1970-01-01")
  Backtrace:
       x
    1. +-testthat::expect_equal(...) at test.convert.R:118:2
    2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
    3. |   \-rlang::eval_bare(expr, quo_get_env(quo))
    4. +-... %>% convert(dtm(a))
    5. +-hablar::convert(., dtm(a))
    6. | \-.x %>% dplyr::mutate_at(dplyr::vars(!!!.vars), .fun)
    7. +-dplyr::mutate_at(., dplyr::vars(!!!.vars), .fun)
    8. | +-dplyr::mutate(.tbl, !!!funs)
    9. | \-dplyr:::mutate.data.frame(.tbl, !!!funs)
   10. |   \-dplyr:::mutate_cols(.data, dplyr_quosures(...), caller_env = caller_env())
   11. |     +-base::withCallingHandlers(...)
   12. |     \-mask$eval_all_mutate(quo)
   13. +-hablar (local) `<inln_cl_>`(a)
   14. | \-rlang::eval_bare(`_quo`, base::parent.frame())
   15. +-rlang (local) as_reliable_dtm(.)
   16. +-hablar::as_reliable_dtm(.)
   17. | +-base::as.POSIXct(.x, origin = origin, tz = tz, ...)
   18. | \-base::as.POSIXct.Date(.x, origin = origin, tz = tz, ...)
   19. \-base::.handleSimpleError(...)
   20.   \-dplyr (local) h(simpleError(msg, call))
   21.     \-rlang::abort(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 414 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  haplo.stats_init.c:22:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  haplo_em_pin.c:30:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./haplo_em_pin.h:28:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./haplo_em_pin.h:107:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  haplo_em_pin.c:1143:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  seqhap.c:17:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  seqhap.c:19:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  seqhap.c:110:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  seqhap.c:627:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  seqhap.c:807:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/haplo.stats.Rcheck/00install.out' for details.
checkRd: (-1) haplo.design.Rd:33: Escaped LaTeX specials: \$
checkRd: (-1) haplo.design.Rd:42: Escaped LaTeX specials: \$
checkRd: (-1) haplo.glm.Rd:176: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) haplo.glm.Rd:178: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) haplo.glm.Rd:283: Escaped LaTeX specials: \$ \$
checkRd: (-1) haplo.glm.Rd:292: Escaped LaTeX specials: \$ \$
checkRd: (-1) haplo.glm.Rd:324: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
checkRd: (-1) HWAlr.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) HWAlrPlot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) HWClr.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) HWClrPlot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) HWIlr.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) HWf.Rd:25: Escaped LaTeX specials: \&
Installation failed.
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) hash-accessors.Rd:46: Escaped LaTeX specials: \$
checkRd: (-1) hash-class.Rd:44: Escaped LaTeX specials: \$
checkRd: (-1) hash-class.Rd:45: Escaped LaTeX specials: \$
checkRd: (-1) hash-package.Rd:39: Escaped LaTeX specials: \#
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) prm09.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) prm09.Rd:26: Escaped LaTeX specials: \&
Found the following significant warnings:
  Soil_HBV.cpp:226:10: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Soil_HBV.cpp:312:10: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/HBV.IANIGLA.Rcheck/00install.out' for details.
checkRd: (-1) schools.Rd:18: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./H5Error.h:25:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  datatype_export.c:64:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  H5Error.c:122:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/hdf5r.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rtkore/projects/Algebra/include/STK_ILeastSquare.h:97:39: warning: returning reference to local temporary object [-Wreturn-stack-address]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/HDPenReg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    TODO:
    "GW", "OLO"
    seriate(cophenetic(dend), method = "OLO", control = list(hclust = as.hclust(dend)))
    the downside in using cophenetic is that seriate has to go through running hclust all over again
    but we'll just have to accept it...
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'synbreed'
'LazyData' is specified without a 'data' directory
checkRd: (-1) erode.hexbin.Rd:43: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ohio.Rd:104: Escaped LaTeX specials: \&
checkRd: (-1) ohio.Rd:105: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
':::' call which should be '::': 'ggplot2:::guide_axis'
  See the note in ?`:::` about the use of this operator.
Unexported objects imported by ':::' calls:
  'ggplot2:::build_guides' 'ggplot2:::scales_list'
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
Running examples in 'highfrequency-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: driftBursts
> ### Title: Inference on drift burst hypothesis
> ### Aliases: driftBursts
> 
> ### ** Examples
> 
> # Usage with data.table object
> dat <- sampleTData[as.Date(DT) == "2018-01-02"]
> # Testing every 60 seconds after 09:45:00
> DBH1 <- driftBursts(dat, testTimes = seq(35100, 57600, 60), preAverage = 2, ACLag = -1L,
+                     meanBandwidth = 300L, varianceBandwidth = 900L)
Error in .POSIXct(unclass(x) * 86400, tz = tz, ...) : 
  unused argument (format = "%Y-%m-%d")
Calls: driftBursts -> as.POSIXct -> as.POSIXct.Date
Execution halted
Package suggested but not available for checking: 'INLA'
Package suggested but not available for checking: 'colorfulVennPlot'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  arms-R.c:83:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  arms-R.c:832:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/HI.Rcheck/00install.out' for details.
checkRd: (-1) trans.dens.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) Snow.Rd:118: Escaped LaTeX specials: \&
checkRd: (-1) Snow.Rd:142: Escaped LaTeX specials: \&
checkRd: (-1) Yeast.Rd:56: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'trackr'
Package which this enhances but not available for checking: 'HadoopStreaming'
Found the following significant warnings:
  hkevp.cpp:446:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:475:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:506:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:534:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:573:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:633:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:652:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:905:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:934:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:965:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:993:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:1251:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:1311:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  hkevp.cpp:1330:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/hkevp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'FGN'
Found the following significant warnings:
  VstarSfunction.c:12:65: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  score.c:14:65: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  score0.c:12:65: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/HKprocess.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  cda.cpp:29:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/hmlasso.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) disc42.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) discrimination.Rd:31: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'glmmADMB'
checkRd: (-1) Dmean.Rd:62: Escaped LaTeX specials: \&
checkRd: (-1) Dvar.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) babies.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) residuals.rsm.Rd:74: Escaped LaTeX specials: \&
Error(s) in re-building vignettes:
  ...
--- re-building 'hockey-ref-scrapers.Rmd' using rmarkdown
Quitting from lines 50-56 (hockey-ref-scrapers.Rmd) 
Error: processing vignette 'hockey-ref-scrapers.Rmd' failed with diagnostics:
Could not get skater stats for 2022
--- failed re-building 'hockey-ref-scrapers.Rmd'

--- re-building 'hockeyR.Rmd' using rmarkdown
--- finished re-building 'hockeyR.Rmd'

SUMMARY: processing the following file failed:
  'hockey-ref-scrapers.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'ROI.plugin.mosek'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'RGtk2', 'cairoDevice'
checkRd: (-1) attributes_speclib.Rd:73: Escaped LaTeX specials: \$
checkRd: (-1) get_reflectance.Rd:34: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./useful.h:6:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/hSDM.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ars_demo.cpp:39:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/HTLR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) simplePostToHost.Rd:14: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  humanleague_init.c:14:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/humanleague.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'hurricaneexposuredata'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./hutilscpp.h:184:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  C_lehmer.c:17:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:55:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  omp_diagnose.c:7:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  omp_diagnose.c:20:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  pcg_hash.c:13:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  pcg_hash.c:37:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/hutilscpp.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) Trancura9414001.Rd:27: Escaped LaTeX specials: \_
checkRd: (-1) Trancura9414001.Rd:28: Escaped LaTeX specials: \_
checkRd: (-1) hydroPSO.Rd:390: Escaped LaTeX specials: \&
checkRd: (-1) hydroPSO.Rd:408: Escaped LaTeX specials: \&
Running examples in 'hydroroute-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: estimate_AE
> ### Title: Estimate Associated Events
> ### Aliases: estimate_AE
> 
> ### ** Examples
> 
> # file paths
> Sx <- system.file("testdata", "Events", "100000_2_2014-01-01_2014-02-28.csv",
+                   package = "hydroroute")
> Sy <- system.file("testdata", "Events", "200000_2_2014-01-01_2014-02-28.csv",
+                   package = "hydroroute")
> relation <- system.file("testdata", "relation.csv", package = "hydroroute")
> 
> # read data
> Sx <- utils::read.csv(Sx)
> Sy <- utils::read.csv(Sy)
> relation <- utils::read.csv(relation)
> relation <- relation[1:2, ]
> 
> # estimate AE, exact time matches
> results <- estimate_AE(Sx, Sy, relation, timeLag = c(0, 1, 0))
Error in .POSIXct(x, tz, ...) : 
  unused argument (format = "%Y-%m-%d %H:%M")
Calls: estimate_AE ... merge_time -> shift_time -> as.POSIXct -> as.POSIXct.default
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'hydroroute-intro.Rmd' using rmarkdown
Quitting from lines 265-280 (hydroroute-intro.Rmd) 
Error: processing vignette 'hydroroute-intro.Rmd' failed with diagnostics:
unused argument (format = "%Y-%m-%d %H:%M")
--- failed re-building 'hydroroute-intro.Rmd'

SUMMARY: processing the following file failed:
  'hydroroute-intro.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Running examples in 'hydroTSM-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: izoo2rzoo
> ### Title: Irregular Zoo -> Regular Zoo
> ### Aliases: izoo2rzoo izoo2rzoo.default izoo2rzoo.zoo
> ### Keywords: manip
> 
> ### ** Examples
> 
> ##
> ## Example 1: Adding NA for February 29th to an existing zoo object
> 
> # dummy values and dates (February 29th is not present !)
> x <- 1:9
> dates <- c("1964-02-25", "1964-02-26", "1964-02-27", "1964-02-28", "1964-03-01", 
+            "1964-03-02", "1964-03-03", "1964-03-04", "1964-03-05")
> 
> # From 'character' to 'Date' class
> dates <- as.Date(dates)
> 
> ## From 'numeric' to 'zoo' class
> x <- zoo(x, dates) # Feb 29th is still missing
> 
> ## Adding a missing value (NA in this case) for Feb 29th
> y <- izoo2rzoo(x)
> 
> ## checking the new length
> length(y) # 1 element more than the original 'x' (Feb 29th)
[1] 10
> 
> 
> ##
> ## Example 2: Extending the original 'x' object from February 1st to the end of 
> #  March, assigning 'NA' to the days in which 'x' do not have a value.
> y <- izoo2rzoo(x, from="1964-02-01", to="1964-03-31")
> 
> 
> ##
> ## Example 3: Working with a zoo matrix
> Y <- cbind(x,x)
> 
> # Adding a missing value (NA in this case) for Feb 29th in all the columns of Y
> rY <- izoo2rzoo(Y, from="1964-02-25", to="1964-03-05")
> 
> 
> ##
> ## Example 4: Working with hourly data, from 01:00 to 10:00 on 12th December 2000
> dates  <- ISOdatetime(2000, 12, 12, 1:10, 0, 0)
> values <- 1:10
> x      <- zoo(values, dates)
> 
> # removing values from 02:00 to 05:00 (not present at all in 'x', not even NA !)
> x <- x[-c(2:5)]
> 
> #  Adding missing values (NA in this case) from 02:00 to 05:00
> y <-  izoo2rzoo(x, date.fmt="%Y-%m-%d %H:%M:%S", tstep="hours")
Error in .POSIXct(x, tz, ...) : 
  unused argument (format = "%Y-%m-%d %H:%M:%S")
Calls: izoo2rzoo -> izoo2rzoo.zoo -> as.POSIXct -> as.POSIXct.default
Execution halted
checkRd: (-1) SandP500.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) SandP500.Rd:7: Escaped LaTeX specials: \&
checkRd: (-1) palettes.Rd:25: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'AIC.txt' 'AICc.txt' 'IAS.pdf' 'IAS2.pdf' 'IAS3.pdf'
  'P.microlepis-AIC.txt' 'P.microlepis-AICc.txt' 'P.microlepis-IAS.pdf'
  'P.microlepis-IAS2.pdf' 'P.microlepis-IAS3.pdf'
Package suggested but not available for checking: 'gutenbergr'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ibdreg_init.c:22:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./mcmemory.h:188:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sim.mark.prop.c:85:64: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sim.mark.prop.c:88:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sim.mark.prop.c:90:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sim.mark.prop.c:303:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sim.mark.prop.c:814:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sim.mark.prop.c:877:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sim.mark.prop.c:1018:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ibdreg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'SparkR'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  initds.c:10:29: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/icapca.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'icd'
checkRd: (-1) ICEscale.Rd:53: Escaped LaTeX specials: \^
checkRd: (-1) dpwdg.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) dpwdg.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) dmahal.Rd:18: Escaped LaTeX specials: \~
Installation failed.
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ichimoku.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) pulmonary.Rd:13: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'rggobi'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'optiRum'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'IFCdata'
Found the following significant warnings:
  ../inst/include/ut_debug.h:188:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ut_debug.c:102:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ifultools.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  cda3.cpp:26:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/iilasso.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  common.c:62:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:12:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utils.c:9:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ijtiff.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  engines.cpp:337:14: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  engines.cpp:351:14: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  engines.cpp:365:14: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  engines.cpp:379:14: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  engines.cpp:401:16: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/imagine.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'accdata'
Running examples in 'impactr-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: define_region
> ### Title: Define region of interest
> ### Aliases: define_region
> 
> ### ** Examples
> 
> data <- read_acc(impactr_example("hip-raw.csv"))
> define_region(
+   data, start_time = "2021-04-06 15:45:00", end_time = "2021-04-06 15:46:00"
+ )
Error in .POSIXct(x, tz, ...) : unused argument (format = "%H:%M:%S")
Calls: define_region ... check_args_define_region -> as.POSIXct -> as.POSIXct.default
Execution halted
Running 'testthat.R' [5s/5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(impactr)
  > 
  > test_check("impactr")
  [ FAIL 2 | WARN 0 | SKIP 11 | PASS 98 ]
  
  == Skipped tests ===============================================================
  * On CRAN (4)
  * `accdata` not available (7)
  
  == Failed tests ================================================================
  -- Error (test-utils.R:71:3): define_region() error handling works -------------
  Error in `.POSIXct(x, tz, ...)`: unused argument (format = "%H:%M:%S")
  Backtrace:
       x
    1. +-testthat::expect_error(...) at test-utils.R:71:2
    2. | \-testthat:::expect_condition_matching(...)
    3. |   \-testthat:::quasi_capture(...)
    4. |     +-testthat (local) .capture(...)
    5. |     | \-base::withCallingHandlers(...)
    6. |     \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. \-impactr::define_region(data, "2017-12-09 15:01:00", "2017-12-09 14:00:00")
    8.   \-impactr:::check_args_define_region(data, start_time, end_time)
    9.     +-base::as.POSIXct(start_time, format = "%H:%M:%S")
   10.     \-base::as.POSIXct.default(start_time, format = "%H:%M:%S")
  -- Error (test-utils.R:79:3): define_region() works ----------------------------
  Error in `.POSIXct(x, tz, ...)`: unused argument (format = "%H:%M:%S")
  Backtrace:
      x
   1. \-impactr::define_region(data, "2017-12-09 15:00:01", "2017-12-09 15:00:03") at test-utils.R:79:2
   2.   \-impactr:::check_args_define_region(data, start_time, end_time)
   3.     +-base::as.POSIXct(start_time, format = "%H:%M:%S")
   4.     \-base::as.POSIXct.default(start_time, format = "%H:%M:%S")
  
  [ FAIL 2 | WARN 0 | SKIP 11 | PASS 98 ]
  Error: Test failures
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'impactr.Rmd' using rmarkdown
Quitting from lines 80-86 (impactr.Rmd) 
Error: processing vignette 'impactr.Rmd' failed with diagnostics:
unused argument (format = "%H:%M:%S")
--- failed re-building 'impactr.Rmd'

SUMMARY: processing the following file failed:
  'impactr.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) school23.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) school23.Rd:35: Escaped LaTeX specials: \&
Found the following significant warnings:
  keyplayer-utils.c:24:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/influenceR.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
BugReports field should be the URL of a single webpage
Package which this enhances but not available for checking: 'gurobi'
Found the following files/directories:
  'c.txt' 'rho.txt' 'sta.txt' 'topo.txt'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Package suggested but not available for checking: 'INLA'
Found the following significant warnings:
  DefinePolygons.c:17:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  DefinePolygons.c:18:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/inlmisc.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'insol-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: eqtime
> ### Title: Equation of time
> ### Aliases: eqtime
> 
> ### ** Examples
> 
> # plot the equation of time for 2013 at daily intervals
> jdays = seq(ISOdate(2013,1,1),ISOdate(2013,12,31),by='day')
> jd = JD(jdays)
> plot(eqtime(jd))
> abline(h=0,col=8)
> 
> # Analema
> plot(eqtime(jd),declination(jd))
> 
> # Analema from Greenwich Observatory
> latGwch = 51.4791
> x = 180+eqtime(jd)*15/60
> y = 90-latGwch+declination(jd)
> plot(x,y,ylim=c(0,90),xlab=expression(paste('Azimuth (',degree,')')),
+ 	ylab=expression(paste('Elevation (',degree,')')))
> 
> ## Add the solstices and equinoxes (nearest day, see Meeus ch. 26 for more precision)
> decl = declination(jd)
> wintersolstice = which(decl==min(decl))
> summersolstice = which(decl==max(decl))
> ## spring equinox: when declination becomes zero in the first part of the year
> springeqx = uniroot(declination,jd[c(1,180)])$root
> springeqx = daydoy(JD(springeqx,inv=TRUE))
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'x' in selecting a method for function 'daydoy': unused argument (format = "%Y-%m-%d %H:%M:%S")
Calls: daydoy ... as.POSIXct -> as.POSIXct.default -> .handleSimpleError -> h
Execution halted
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    INSPECTumours (development version)
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    TODO for future releases:
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Error_Estimation_Response_1.tiff' 'Error_Estimation_Response_2.tiff'
  'Error_Estimation_Response_3.tiff'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./ebm_native/EbmStatisticUtils.h:86:122: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/interpret.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) Intervals-class.Rd:109: Escaped LaTeX specials: \_
checkRd: (-1) Intervals-class.Rd:110: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:68: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:76: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:77: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:78: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:79: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:81: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:88: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:89: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:90: Escaped LaTeX specials: \_
checkRd: (-1) sgd.Rd:12: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [3s/4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(inverseRegex)
  > 
  > test_check("inverseRegex")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 62 ]
  
  == Failed tests ================================================================
  -- Failure (test.inverseRegex.R:91:5): Inputs other than type character work as expected --
  inverseRegex(Sys.time()) not equal to inverseRegex(as.character(Sys.time())).
  1/1 mismatches
  x[1]: "[[:digit:]]{4}-[[:digit:]]{2}-[[:digit:]]{2} [[:digit:]]{2}:[[:digit:]]{2
  x[1]: }:[[:digit:]]{2}.[[:digit:]]{5}"
  y[1]: "[[:digit:]]{4}-[[:digit:]]{2}-[[:digit:]]{2} [[:digit:]]{2}:[[:digit:]]{2
  y[1]: }:[[:digit:]]{2}.[[:digit:]]+"
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 62 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File 'iotools/libs/iotools.so':
  Found non-API calls to R: 'R_GetConnection', 'R_ReadConnection',
    'R_WriteConnection'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) constrained.Rd:49: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
  ...
--- re-building 'Ex-01-Propensity-Score-Weights-Using-GBM.Rmd' using rmarkdown
Could not fetch https://live.staticflickr.com/65535/52279750317_4d5f5912b6_o.png
HttpExceptionRequest Request {
  host                 = "live.staticflickr.com"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/65535/52279750317_4d5f5912b6_o.png"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
  proxySecureMode      = ProxySecureWithConnect
}
 (InternalException (HandshakeFailed (Error_Misc "Network.Socket.sendBuf: resource vanished (Connection reset by peer)")))
Error: processing vignette 'Ex-01-Propensity-Score-Weights-Using-GBM.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building 'Ex-01-Propensity-Score-Weights-Using-GBM.Rmd'

--- re-building 'Ex-02-Adjusting-For-Survey-Non-Response-Using-Weights.Rmd' using rmarkdown
--- finished re-building 'Ex-02-Adjusting-For-Survey-Non-Response-Using-Weights.Rmd'

--- re-building 'Ex-03-Instructor-Level-Effects-With-Bayesian-Multilevel-Models.Rmd' using rmarkdown
--- finished re-building 'Ex-03-Instructor-Level-Effects-With-Bayesian-Multilevel-Models.Rmd'

--- re-building 'Ex-04-Webscraping-Online-Data-Files.Rmd' using rmarkdown
--- finished re-building 'Ex-04-Webscraping-Online-Data-Files.Rmd'

--- re-building 'Ex-05-Geocoding-Addresses.Rmd' using rmarkdown
--- finished re-building 'Ex-05-Geocoding-Addresses.Rmd'

SUMMARY: processing the following file failed:
  'Ex-01-Propensity-Score-Weights-Using-GBM.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'IRISSeismic-intro.Rmd' using rmarkdown
Quitting from lines 80-89 (IRISSeismic-intro.Rmd) 
Error: processing vignette 'IRISSeismic-intro.Rmd' failed with diagnostics:
do not know how to convert 'e' to class "POSIXct"
--- failed re-building 'IRISSeismic-intro.Rmd'

SUMMARY: processing the following file failed:
  'IRISSeismic-intro.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  ./phi.h:33:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/IRon.Rcheck/00install.out' for details.
checkRd: (-1) bp.coeff.raw.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) fleiss.kappa.raw.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:17: Escaped LaTeX specials: \&
checkRd: (-1) ir_to_transmittance.Rd:49: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  item_analysis.cpp:75:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/irt.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) pine.Rd:20: Escaped LaTeX specials: \&
Found the following significant warnings:
  trace_islasso.c:39:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/islasso.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  Genetics.cpp:363:20: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  Genetics.cpp:376:20: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  Genetics.cpp:376:51: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/isqg.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Found the following files/directories:
  'RMTplot.pdf'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gurobi'
Package suggested but not available for checking: 'locClass'
checkRd: (-1) ivmodel.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) ivmodelFormula.Rd:79: Escaped LaTeX specials: \&
Packages suggested but not available for checking: 'gurobi', 'cplexAPI'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [22s/25s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(janitor)
  
  Attaching package: 'janitor'
  
  The following objects are masked from 'package:stats':
  
      chisq.test, fisher.test
  
  > 
  > test_check("janitor")
  Reading layer `nc' from data source 
    `/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sf/shape/nc.shp' 
    using driver `ESRI Shapefile'
  Simple feature collection with 100 features and 14 fields
  Geometry type: MULTIPOLYGON
  Dimension:     XY
  Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
  Geodetic CRS:  NAD27
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 645 ]
  
  == Skipped tests ===============================================================
  * On CRAN (1)
  
  == Failed tests ================================================================
  -- Error (test-convert_to_date.R:85:3): convert_datetime works -----------------
  Error in `.POSIXct(unclass(x) * 86400, tz = tz, ...)`: unused arguments (character_fun = function (..., quiet = FALSE, tz = "UTC", locale = Sys.getlocale("LC_TIME"), truncated = 0) 
  {
      .parse_xxx_hms(..., orders = c("ymdTz", "ymdT"), quiet = quiet, tz = tz, locale = locale, truncated = truncated)
  }, string_conversion_failure = "error")
  Backtrace:
      x
   1. +-testthat::expect_equal(...) at test-convert_to_date.R:85:2
   2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
   3. |   \-rlang::eval_bare(expr, quo_get_env(quo))
   4. \-janitor::convert_to_datetime(as.Date("2009-07-06"))
   5.   +-janitor:::convert_to_datetime_helper(...)
   6.   \-janitor:::convert_to_datetime_helper.Date(...)
   7.     +-base::as.POSIXct(x, ...)
   8.     \-base::as.POSIXct.Date(x, ...)
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 645 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Warning: unable to re-encode 'helper_letter.convert.R' lines 302, 318, 324, 328, 329, 330, 331, 337, 338, 340, 350, 353, 354, 356, 357, 358, 375, 380, 499
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/JATSdecoder.Rcheck/00install.out' for details.
Found the following significant warnings:
  jGDtalk.c:116:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  jGDtalk.c:797:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  javaGD.c:153:9: warning: expression which evaluates to zero treated as a null pointer constant of type 'newJavaGDDesc *' [-Wnon-literal-null-conversion]
  javaGD.c:373:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  javaGD.c:382:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/JavaGD.Rcheck/00install.out' for details.
Output from running autoreconf:
  configure.ac:4: warning: The macro `AC_CONFIG_HEADER' is obsolete.
  configure.ac:4: You should run autoupdate.
  ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
  configure.ac:4: the top level
  configure.ac:24: warning: The macro `AC_HEADER_STDC' is obsolete.
  configure.ac:24: You should run autoupdate.
  ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from...
  configure.ac:24: the top level
  configure.ac:30: warning: The macro `AC_HEADER_TIME' is obsolete.
  configure.ac:30: You should run autoupdate.
  ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from...
  configure.ac:30: the top level
  configure.ac:34: warning: The macro `AC_TYPE_SIGNAL' is obsolete.
  configure.ac:34: You should run autoupdate.
  ./lib/autoconf/types.m4:776: AC_TYPE_SIGNAL is expanded from...
  configure.ac:34: the top level
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    joineR <1.1
Package which this enhances but not available for checking: 'remMap'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./rjcommon.h:75:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/jpeg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./push_parser.h:1:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  yajl/yajl_tree.c:523:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/jsonlite.Rcheck/00install.out' for details.
checkRd: (-1) summ.rq.Rd:104: Escaped LaTeX specials: \&
checkRd: (-1) summ.rq.Rd:108: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    pre-release juicr (2017 - 2021)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'my.Mobius.set.func.csv' 'my.card.set.func.csv' 'my.set.func.csv'
Found the following files/directories:
  'song.wav' 'song4karaoke.wav'
Found the following HTML validation problems:
math_to_rd.html:81:2153: Warning: <svg> attribute "width" has invalid value "400em"
math_to_rd.html:81:2153: Warning: <svg> attribute "height" has invalid value "1.08em"
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  evaluators.cpp:52:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kdevine.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ionosphere.Rd:22: Escaped LaTeX specials: \&
checkRd: (-1) ionosphere.Rd:32: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  keypress-unix.c:3:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keypress-win.c:3:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/keypress.Rcheck/00install.out' for details.
Found the following significant warnings:
  init.c:12:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:30:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring_macos.c:523:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring_secret_service.c:3:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring_secret_service.c:15:50: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring_secret_service.c:59:64: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring_secret_service.c:91:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring_secret_service.c:394:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring_wincred.c:3:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/keyring.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Minor Changes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./kit.h:92:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utils.c:21:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kit.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'rkward'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'cld1.Rdata' 'main.tex' 'myCld.Rdata' 'myCld3d.Rdata' 'scene.asy'
Found the following files/directories:
  'cld1.Rdata' 'ld.Rdata' 'myCld.Rdata'
Found the following significant warnings:
  kmlShape.c:5:81: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  kmlShape.c:157:85: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/kmlShape.Rcheck/00install.out' for details.
checkRd: (-1) pathFrechet.Rd:54: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Killed after '
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'VARSEDIG'
Unknown package 'VARSEDIG' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'koRpus.lang.de', 'koRpus.lang.es', 'koRpus.lang.fr',
  'koRpus.lang.it', 'koRpus.lang.nl', 'koRpus.lang.pt',
  'koRpus.lang.ru'

Package which this enhances but not available for checking: 'rkward'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ProteinSequence.cpp:347:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/krm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'KSEA Bar Plot.tiff' 'KSEA Kinase Scores.csv'
  'KSEA.Merged.Heatmap.png' 'Kinase-Substrate Links.csv'
'LazyData' is specified without a 'data' directory
checkRd: (-1) kstIO-package.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) read_kbase.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) read_kdata.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) read_kfamset.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) read_kspace.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) read_kstructure.Rd:45: Escaped LaTeX specials: \&
checkRd: (-1) read_surmiserelation.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) write_kbase.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) write_kdata.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) write_kspace.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) write_kstructure.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) write_surmiserelation.Rd:36: Escaped LaTeX specials: \&
Found the following files/directories:
  'DF7.bas' 'DF7.dat' 'DF7.rel' 'DF7.spc' 'DF7.struct'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) alphaOnly.Rd:25: Escaped LaTeX specials: \^
checkRd: (-1) alphaOnly.Rd:26: Escaped LaTeX specials: \$
checkRd: (-1) escape.Rd:28: Escaped LaTeX specials: \$
checkRd: (-1) natlongsurv.Rd:28: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'MYSLID.csv' 'tabelle.csv'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:32:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:34:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/laGP.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./reader.h:10:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  languageserver.c:16:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  reader.c:110:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/languageserver.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LaplaceApproximation.Rd:485: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:115: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:117: Escaped LaTeX specials: \&
Found the following significant warnings:
  LA.cpp:143:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  LA.cpp:143:54: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  LA.cpp:164:25: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/LA.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  init.c:19:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/largeList.Rcheck/00install.out' for details.
Found the following files/directories:
  'example.llo'
Found the following significant warnings:
  ExportedFunctions.cpp:101:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  ExportedFunctions.cpp:106:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/LassoBacktracking.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ergm.userterms'
checkRd: (-1) simulate.ergmm.Rd:35: Escaped LaTeX specials: \$
checkRd: (-1) simulate.ergmm.Rd:36: Escaped LaTeX specials: \$
Unknown package 'ergm.userterms' in Rd xrefs
GNU make is a SystemRequirements.
Found the following significant warnings:
  init.c:12:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:18:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:24:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:27:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:51:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/later.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./lrsmp.h:147:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lrslib.c:1466:18: warning: if statement has empty body [-Wempty-body]
  lrsmp.c:40:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/LatticeDesign.Rcheck/00install.out' for details.
checkRd: (-1) LKrig.MLE.Rd:114: Escaped LaTeX specials: \$ \$
checkRd: (-1) LKrig.MLE.Rd:115: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'gof', 'lava.tobit'
checkRd: (-1) Col.Rd:17: Escaped LaTeX specials: \#
checkRd: (-1) regression-set.Rd:103: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Found the following calls to attach():
File 'lazyData/R/requireData.R':
  attach(NULL, pos = pos, name = searchDataName)
See section 'Good practice' in '?attach'.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) goodnessfit.Rd:105: Escaped LaTeX specials: \&
checkRd: (-1) lba.Rd:252: Escaped LaTeX specials: \&
checkRd: (-1) pregnancy.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) pregnancy.Rd:46: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    lcars.0.3.1
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'temp.float.csv' 'temp.result.athena.csv'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  lcopula-init.c:15:50: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lcopula.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  em.cpp:103:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ldsep.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    light.interception.voxels() - This function create the Fraction absorbed incident light
    light.interception.raster() - Create a raster of Fraction absorbed incident light
    light.incident.voxels() - This function create the Fraction incident light
    light.incident.raster() - Create a raster of the Fraction incident light
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) leaps.Rd:38: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  rigraph/src/plfit/gss.h:132:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/plfit/gss.c:60:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/plfit/platform.c:36:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/plfit/mt.c:20:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/attributes.c:281:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/init.c:51:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/init.c:104:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/rinterface.c:2354:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/rinterface.c:2370:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/rinterface.c:9538:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/random.c:626:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rigraph/src/glpk_support.c:95:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/leidenbase.Rcheck/00install.out' for details.
Found the following significant warnings:
  lemna.c:98:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lemna.c:109:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lemna.c:120:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lemna.c:129:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lemna.c:138:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lemna.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'spelling.R' [0s/1s]
  Running 'testthat.R' [36s/46s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  > library("LexisNexisTools")
  LexisNexisTools Version 0.3.5
  > 
  > test_check("LexisNexisTools")
  
    |                                                  | 0 % ~calculating  
    |+++++                                             | 10% ~00s          
    |++++++++++                                        | 20% ~00s          
    |+++++++++++++++                                   | 30% ~00s          
    |++++++++++++++++++++                              | 40% ~00s          
    |+++++++++++++++++++++++++                         | 50% ~00s          
    |++++++++++++++++++++++++++++++                    | 60% ~00s          
    |+++++++++++++++++++++++++++++++++++               | 70% ~00s          
    |++++++++++++++++++++++++++++++++++++++++          | 80% ~00s          
    |+++++++++++++++++++++++++++++++++++++++++++++     | 90% ~00s          
    |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=00s  
    adding: sample.DOCX (deflated 45%)
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 99 ]
  
  == Skipped tests ===============================================================
  * !dir.exists("/home/johannes/Dropbox/LexisNexis_sample_files/") is TRUE (1)
  * On CRAN (1)
  
  == Failed tests ================================================================
  -- Failure (test-lnt_convert.R:16:3): Convert LNToutput to rDNA ----------------
  {
      ...
  } not equal to readRDS("../files/rDNA.RDS").
  Component "date": 'tzone' attributes are inconsistent ('UTC' and '')
  
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 99 ]
  Error: Test failures
  Execution halted
Found the following significant warnings:
  ./lfe.h:121:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./lfe.h:122:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utils.c:195:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utils.c:208:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lfe.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) hydro.Rd:17: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  init.c:14:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lhs.Rcheck/00install.out' for details.
Found the following significant warnings:
  libgeos-init.c:41:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libgeos-init.c:434:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/libgeos.Rcheck/00install.out' for details.
Found the following significant warnings:
  trainLinear.c:20:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  trainLinear.c:93:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/LiblineaR.ACF.Rcheck/00install.out' for details.
Found the following significant warnings:
  trainLinear.c:19:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  trainLinear.c:20:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  trainLinear.c:100:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  trainLinear.c:130:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/LiblineaR.Rcheck/00install.out' for details.
checkRd: (-1) predict.lb.Rd:16: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'gWidgets', 'gWidgetsRGtk2', 'RGtk2'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:6:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/liGP.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LIMEcoli.Rd:125: Escaped LaTeX specials: \_
checkRd: (-1) Read.Rd:88: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:92: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:98: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:104: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:105: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:106: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:107: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:108: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:109: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:110: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:111: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:112: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:114: Escaped LaTeX specials: \# \#
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following math rendering problems:
WLindley.Rd:54: Undefined control sequence: \label in ...e^{-\theta x}  \label{density-weight...
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) solveLP.Rd:119: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  littler.c:334:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  littler.c:368:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  littler.c:393:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  littler.c:426:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  littler.c:456:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/littler.Rcheck/00install.out' for details.
checkRd: (-1) lstats.liu.Rd:41: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) MHDI.Rd:23: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) cauchypoly.Rd:39: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) cauchypoly.Rd:40: Escaped LaTeX specials: \_
checkRd: (-1) normpoly.Rd:38: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) normpoly.Rd:39: Escaped LaTeX specials: \_
Running examples in 'lmomPi-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cdf
> ### Title: Generic function for 'cdf...': probability distribution fitting
> ###   with L-Moments.
> ### Aliases: cdf spi.cdf cdf.spi
> 
> ### ** Examples
> 
> 
> # Sample L-moments of Ozone from the airquality data
> data(airquality)
> lmom <- samlmu(airquality$Ozone,nmom=6)
> 
> distrib <- c("exp","gam","gev","glo","gpa","gno","gum","kap",
+ "ln3","nor","pe3","wak","wei")
> 
> para_list <- pel(distrib=distrib,lmom=lmom)
> cdf_list <- cdf(para=para_list,x=airquality$Ozone)
> 
>  library(rasterList)
Loading required package: raster
Loading required package: sp
>  precff <- system.file("map/Mekrou_precipitation.grd", package="rasterList")
> 	precs <- stack(precff)
>  prec_point <- precs[143][,]
> 
>  ## month index 
>  month <- as.character(as.Date(names(prec_point),format="X%Y.%m.%d"),format="M%m")
Warning in as.character.POSIXt(as.POSIXlt(x), ...) :
  as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?
>  prec_point[(prec_point<1) & (month=="M01")] <- 0
> 
>  distrib_prec2 <- c("gam")
>  para_vvv <- pel(x=prec_point,indices=month,distrib=distrib_prec2)
Error in if (lmom[2] == 0) { : missing value where TRUE/FALSE needed
Calls: pel -> tapply -> lapply -> FUN -> pel
Execution halted
'LazyData' is specified without a 'data' directory
checkRd: (-1) hatr.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) lmSubsets-package.Rd:48: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'tTestTable.rda'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Author
    Maintainer
checkRd: (-1) SPSloess.Rd:71: Escaped LaTeX specials: \^ \^
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  CPkPlj.c:160:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  CPkPlj.c:324:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  CcovI.c:21:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/locits.Rcheck/00install.out' for details.
checkRd: (-1) TrafficFlow.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) ACS.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) EmployedACS.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSale.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSaleCA.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSaleCanton.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSaleNY.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) MustangPrice.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) MustangPrice.Rd:24: Escaped LaTeX specials: \$
checkRd: (-1) SalaryGender.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) SandP500.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) SandP500.Rd:24: Escaped LaTeX specials: \&
checkRd: (-1) SandP500.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) SandwichAnts.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) SandwichAnts2.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) StockChanges.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) StockChanges.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) TrafficFlow.Rd:18: Escaped LaTeX specials: \#
Found the following significant warnings:
  locpol.c:101:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/locpol.Rcheck/00install.out' for details.
checkRd: (-1) KernelChars.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) Kernels.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) PRDenEstC.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) compKernVals.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) denCVBwSelC.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) equivKernel.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) kernelCtes.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) locPolWeights.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) locpol.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) locpol.Rd:82: Escaped LaTeX specials: \&
checkRd: (-1) locpolSmoothers.Rd:54: Escaped LaTeX specials: \&
checkRd: (-1) pluginBw.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) regCVBwSelC.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) thumbBw.Rd:40: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  clogic.c:13:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  clogic.c:14:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  clogic.c:15:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  swrite.c:14:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/LogicReg.Rcheck/00install.out' for details.
checkRd: (-1) logreg.myown.Rd:19: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:20: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:24: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:99: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:120: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:132: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:133: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:134: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:172: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:182: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:184: Escaped LaTeX specials: \_ \_
Found the following significant warnings:
  ./veclib.h:316:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/logistf.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'main.tex' 'scene.asy'
'LazyData' is specified without a 'data' directory
checkRd: (-1) butstrap.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) butstrap.nri.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) butstrap.s.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) maxauc.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) maxauc.s.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) nri.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) roc.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) roc.s.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) sensspec.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) sensspec.s.Rd:47: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following HTML validation problems:
loon.shiny-package.html:23:4: Warning: <img> attribute "align" not allowed for HTML5
Found the following files/directories:
  'Model_1.cm' 'dambacher.dot' 'levins.dot'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'scio'
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  LowRankQP.c:278:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  LowRankQP_init.c:29:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/LowRankQP.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Checking should be performed on sources prepared by 'R CMD build'.
'LazyData' is specified without a 'data' directory
checkRd: (-1) lpepa.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:90: Escaped LaTeX specials: \&
checkRd: (-1) lpridge.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) lpridge.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) lpridge.Rd:65: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ../inst/include/RlpSolveLink.h:288:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  RlpSolveLink.c:2442:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lp_matrix.c:3297:59: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lpSolveAPI.Rcheck/00install.out' for details.
Found the following significant warnings:
  lp_matrix.c:2913:59: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./lp_rlp.h:1161:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./lp_rlp.h:1293:49: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./lp_rlp.h:1401:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lp_rlp.c:569:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./lp_rlp.h:1401:12: warning: 'static' function 'input' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
  yacc_read.c:139:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  yacc_read.c:547:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lpSolve.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'kerdiest'
checkRd: (-1) specialchars.Rd:6: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LS.kalman.Rd:65: Escaped LaTeX specials: \&
checkRd: (-1) spectral.density.Rd:55: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  period.c:116:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lubridate.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'test'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  proj_conf_test.c:5:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  proj_conf_test.c:4:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./liblwgeom/liblwgeom.h:305:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  liblwgeom/lwgeom_geos.c:613:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  liblwgeom/lwgeom_api.c:36:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  liblwgeom/lwgeom_api.c:667:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  liblwgeom/lwgeom_api.c:671:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  liblwgeom/lwboundingcircle.c:36:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  liblwgeom/lwboundingcircle.c:217:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lwin_wkt_lex.l:16:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lwin_wkt_lex.l:129:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lwgeom.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./map_lib.h:42:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  map_lib.c:45:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lxb.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) read.magpie.Rd:20: Escaped LaTeX specials: \_ \_
checkRd: (-1) read.magpie.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) read.magpie.Rd:35: Escaped LaTeX specials: \_
checkRd: (-1) read.magpie.Rd:36: Escaped LaTeX specials: \_
checkRd: (-1) read.magpie.Rd:65: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:24: Escaped LaTeX specials: \_ \_
checkRd: (-1) write.magpie.Rd:27: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:39: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:40: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:42: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:43: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:70: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
checkRd: (-1) cilleruelo.Rd:36: Escaped LaTeX specials: \#
Problems with news in 'NEWS.md':
No news entries found.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Package unavailable to check Rd xrefs: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  libCEigen.c:76:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libCEigen.c:76:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ManlyMix.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'RGtk2'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Gmake.c:17:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Gmake.c:93:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Lmake.c:18:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mapdata.Rcheck/00install.out' for details.
checkRd: (-1) china.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) china.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) japan.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) japan.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) nzHires.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) nzHires.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) rivers.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) rivers.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) world2Hires.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) world2Hires.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) worldHires.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) worldHires.Rd:52: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Bug Fixes
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  eisenlohr.c:19:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  mapproject.c:16:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  mapproject.c:20:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mapproj.Rcheck/00install.out' for details.
checkRd: (-1) mapproject.Rd:203: Escaped LaTeX specials: \_
checkRd: (-1) mapproject.Rd:204: Escaped LaTeX specials: \_
checkRd: (-1) mapproject.Rd:210: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'scrubr'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    To do
Found the following significant warnings:
  Gmake.c:17:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Gmake.c:93:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Lmake.c:18:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/maps.Rcheck/00install.out' for details.
checkRd: (-1) county.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) county.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) france.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) france.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) italy.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) italy.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) match.map.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) nz.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) nz.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) state.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) state.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) state.carto.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) state.carto.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) state.vbm.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) state.vbm.Rd:45: Escaped LaTeX specials: \&
checkRd: (-1) usa.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) usa.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) world.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) world.Rd:45: Escaped LaTeX specials: \&
checkRd: (-1) world2.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) world2.Rd:54: Escaped LaTeX specials: \&
checkRd: (-1) sw_sfac.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) Interpolation-class.Rd:41: Escaped LaTeX specials: \#
checkRd: (-1) MareyMap-class.Rd:85: Escaped LaTeX specials: \_
checkRd: (-1) MareyMap-methods.Rd:11: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) MareyMap-methods.Rd:12: Escaped LaTeX specials: \_
checkRd: (-1) SpeciesMaps-methods.Rd:11: Escaped LaTeX specials: \_
checkRd: (-1) interpolation-methods.Rd:13: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
checkRd: (-1) mma.Rd:67: Escaped LaTeX specials: \&
checkRd: (-1) residuals.rsm.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) marima.Rd:223: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./Rmarkdown.h:32:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Rmarkdown.c:179:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/markdown.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'flashr'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) GerberGreenImai.Rd:22: Escaped LaTeX specials: \#
checkRd: (-1) GerberGreenImai.Rd:31: Escaped LaTeX specials: \#
checkRd: (-1) GerberGreenImai.Rd:34: Escaped LaTeX specials: \#
checkRd: (-1) GerberGreenImai.Rd:35: Escaped LaTeX specials: \#
Package suggested but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
checkRd: (-1) size_t-class.Rd:6: Escaped LaTeX specials: \_
Found the following significant warnings:
  libCEigen.c:76:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libCEigen.c:76:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MatManlyMix.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  m_exp.cpp:21:18: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/matrixdist.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  ./t_sparseVector.c:83:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./chm_common.h:72:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./chm_common.h:93:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./chm_common.h:94:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  chm_common.c:8:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  chm_common.c:25:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  chm_common.c:50:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Matrix.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  allocMatrix2.c:10:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  allocMatrix2.c:16:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/matrixStats.Rcheck/00install.out' for details.
Found the following files/directories:
  'utilities.R'
'LazyData' is specified without a 'data' directory
checkRd: (-1) maxControl.Rd:83: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'map_5.png' 'maze_5.html'
Found the following significant warnings:
  ./include/GenMatrix.h:56:12: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./include/MBAdata.h:50:12: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./include/UCBsplineSurface.h:48:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./include/MBA.h:73:12: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MBA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cplexAPI'
checkRd: (-1) salamander.Rd:22: Escaped LaTeX specials: \&
checkRd: (-1) mc.lnOR.Rd:7: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) MCtest.Rd:39: Escaped LaTeX specials: \#
checkRd: (-1) MCtest.Rd:40: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  chMatrix.c:162:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  mcmcsae_init.c:16:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mcmcsae.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) eigp.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:41: Escaped LaTeX specials: \&
Checking should be performed on sources prepared by 'R CMD build'.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Initial version.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) glass.Rd:23: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) glass.Rd:24: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) glass.Rd:25: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) glass.Rd:26: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) pBED.Rd:34: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./threat-safe-random.h:58:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./threat-safe-random.h:70:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mdgc.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'RGtk2'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mriTest.Rd:9: Escaped LaTeX specials: \&
checkRd: (-1) riTest.Rd:9: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  meanr_native.c:8:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  meanr_nthreads.c:9:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  meanr_nthreads.c:31:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/meanr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mebootSpear.Rd:88: Escaped LaTeX specials: \_
checkRd: (-1) ullwan.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) ullwan.Rd:8: Escaped LaTeX specials: \& \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Data_Correlation.txt' 'correlation_FDR_table.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  pspp-system-for-R.c:34:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  pspp-system-for-R.c:1291:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/memisc.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) Soybean.Rd:15: Escaped LaTeX specials: \#
checkRd: (-1) Soybean.Rd:33: Escaped LaTeX specials: \#
Found the following significant warnings:
  meminfo/src/meminfo.h:61:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./meminfo/src/meminfo.h:61:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  wrappers.c:48:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  wrappers.c:71:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  wrappers.c:93:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  wrappers.c:129:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  memuse_native.c:8:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  memuse_native.c:11:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  memuse_native.c:12:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  memuse_native.c:14:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/memuse.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'genuMet'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'cycHumanBloodData.csv' 'cycHumanBloodDesign.csv'
  'cycMouseLiverProtein.txt' 'cycMouseLiverRNA.csv' 'cycSimu4h2d.csv'
  'cycYeastCycle.csv' 'example'
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) dslp.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) cardiac.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) plvol.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) sbp.Rd:16: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'MetProc_output.pdf' 'sample_removed.csv' 'sample_retained.csv'
Found the following HTML validation problems:
metR.html:23:4: Warning: <img> attribute "align" not allowed for HTML5
Found the following significant warnings:
  init.c:37:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mets.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    mev v.1.9x
    mev v.1.8x
Found the following significant warnings:
  ./SplineFunc.h:9:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./SplineFunc.h:17:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./SplineFunc.h:20:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  SplineFunc.c:84:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  SplineFunc.c:212:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  SplineFunc.c:248:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mexhaz.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    First release of mfe:
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  loglikelihood.c:483:20: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  loglikelihood_GJR.c:442:20: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mgarchBEKK.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  matrix.c:172:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mgcv.Rcheck/00install.out' for details.
checkRd: (-1) gam.fit3.Rd:4: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'structSSI'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Package unavailable to check Rd xrefs: 'DAPAR'
checkRd: (-1) IPDNa.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) fdgs.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) mice.impute.cart.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) mice.impute.rf.Rd:75: Escaped LaTeX specials: \&
checkRd: (-1) pmm.match.Rd:41: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./do_nothing.h:4:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  do_nothing.c:11:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:7:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  nanotimer.c:88:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/microbenchmark.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'microcontax.data'
Package unavailable to check Rd xrefs: 'microcontax.data'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [11s/16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(MicroMoB)
  > 
  > test_check("MicroMoB")
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 915 ]
  
  == Failed tests ================================================================
  -- Error (test-api_mosquitoes_plumber.R:24:3): endpoints error properly --------
  Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed to connect to localhost port 7796 after 0 ms: Connection refused
  Backtrace:
      x
   1. \-httr::GET(root_path, port = api_port, path = "config_global_parameters") at test-api_mosquitoes_plumber.R:24:2
   2.   \-httr:::request_perform(req, hu$handle$handle)
   3.     +-httr:::request_fetch(req$output, req$url, handle)
   4.     \-httr:::request_fetch.write_memory(req$output, req$url, handle)
   5.       \-curl::curl_fetch_memory(url, handle = handle)
  -- Error (test-api_mosquitoes_plumber.R:144:3): run simulation via API ---------
  Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed to connect to localhost port 7796 after 0 ms: Connection refused
  Backtrace:
      x
   1. \-httr::GET(...) at test-api_mosquitoes_plumber.R:144:2
   2.   \-httr:::request_perform(req, hu$handle$handle)
   3.     +-httr:::request_fetch(req$output, req$url, handle)
   4.     \-httr:::request_fetch.write_memory(req$output, req$url, handle)
   5.       \-curl::curl_fetch_memory(url, handle = handle)
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 915 ]
  Error: Test failures
  Execution halted
Found the following significant warnings:
  init.c:12:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:15:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:16:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/microsimulation.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
Running examples in 'MIMSunit-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aggregate_for_orientation
> ### Title: Aggregate over epoch to get estimated accelerometer orientation.
> ### Aliases: aggregate_for_orientation
> 
> ### ** Examples
> 
>   # Use sample input data
>   df = sample_raw_accel_data
>   head(df)
    HEADER_TIME_STAMP     X      Y      Z
1 2016-01-15 11:00:00 0.148 -0.438  0.016
2 2016-01-15 11:00:00 0.215 -0.418 -0.023
3 2016-01-15 11:00:00 0.266 -0.402 -0.012
4 2016-01-15 11:00:00 0.336 -0.430  0.012
5 2016-01-15 11:00:00 0.430 -0.320  0.000
6 2016-01-15 11:00:00 0.535 -0.258  0.004
> 
>   # set epoch to 1 second and unit to degree
>   # last epoch does not have enough samples to estimate orientation angles.
>   aggregate_for_orientation(df, epoch='1 sec', unit='deg')
Error in .POSIXct(x, tz, ...) : unused argument (origin = "1970-01-01")
Calls: aggregate_for_orientation -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) AKMCS.Rd:215: Escaped LaTeX specials: \&
checkRd: (-1) BMP.Rd:164: Escaped LaTeX specials: \&
checkRd: (-1) IRW.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) IRW.Rd:151: Escaped LaTeX specials: \&
checkRd: (-1) MP.Rd:142: Escaped LaTeX specials: \&
checkRd: (-1) MetropolisHastings.Rd:58: Escaped LaTeX specials: \&
checkRd: (-1) SubsetSimulation.Rd:152: Escaped LaTeX specials: \&
checkRd: (-1) oscillator_d6.Rd:14: Escaped LaTeX specials: \&
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rtkore/projects/Algebra/include/STK_ILeastSquare.h:97:39: warning: returning reference to local temporary object [-Wreturn-stack-address]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MixAll.Rcheck/00install.out' for details.
checkRd: (-1) SLD.Rd:20: Escaped LaTeX specials: \&
Package which this enhances but not available for checking: 'AnalyzeFMRI'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Bug Fix
    Update Vignettes
    Function Optimizing
    New Functions
    Vignette
    Optimization
    Fix Bugs
    Add New Function
    Update Description Files
    Fix bugs
    New .R files
    Update Old .R files
checkRd: (-1) mixmeta-package.Rd:115: Escaped LaTeX specials: \&
checkRd: (-1) mixmeta.ml.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) ml.igls.Rd:62: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'mixRasch'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  libCEigen.c:84:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libCEigen.c:84:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MixSim.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) RTdata2.Rd:3: Escaped LaTeX specials: \#
checkRd: (-1) boot.comp.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) boot.se.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) compCDF.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) hmeEM.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) logisregmixEM.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) multmixEM.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) mvnormalmixEM.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) normalmixEM.Rd:133: Escaped LaTeX specials: \&
checkRd: (-1) normalmixEM2comp.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) poisregmixEM.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) regmixEM.Rd:67: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) qboxplot.Rd:127: Escaped LaTeX specials: \&
checkRd: (-1) qboxplot.Rd:130: Escaped LaTeX specials: \&
checkRd: (-1) qbxp.stats.Rd:66: Escaped LaTeX specials: \&
checkRd: (-1) mi.t.test.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) qboxplot.Rd:127: Escaped LaTeX specials: \&
checkRd: (-1) qboxplot.Rd:130: Escaped LaTeX specials: \&
checkRd: (-1) qbxp.stats.Rd:66: Escaped LaTeX specials: \&
checkRd: (-1) ssize.propCI.Rd:38: Escaped LaTeX specials: \&
Found the following significant warnings:
  waveform.c:31:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  waveform.c:44:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mlbench.Rcheck/00install.out' for details.
checkRd: (-1) BreastCancer.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) Ionosphere.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) Ionosphere.Rd:59: Escaped LaTeX specials: \&
checkRd: (-1) PimaIndiansDiabetes.Rd:19: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
checkRd: (-1) Texture.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) AutumnLab.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:34: Escaped LaTeX specials: \&
Found the following significant warnings:
  reduc.c:158:46: warning: for loop has empty body [-Wempty-body]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MLEcens.Rcheck/00install.out' for details.
checkRd: (-1) gp.list.Rd:16: Escaped LaTeX specials: \#
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./mlpack/core/tree/rectangle_tree/x_tree_split_impl.hpp:152:17: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  ./mlpack/core/tree/rectangle_tree/x_tree_split_impl.hpp:167:19: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mlpack.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'mlr3proba'
Package suggested but not available for checking: 'distr6'
Unknown package 'distr6' in Rd xrefs
Package suggested but not available for checking: 'sperrorest'
Unknown package 'sperrorest' in Rd xrefs
Running 'testthat.R' [112s/74s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > if (requireNamespace("testthat", quietly = TRUE)) {
  +   library("checkmate")
  +   library("testthat")
  +   library("mlr3spatiotempcv")
  +   test_check("mlr3spatiotempcv")
  + }
  Loading required package: mlr3
  Starting 2 test processes
  [ FAIL 1 | WARN 0 | SKIP 53 | PASS 1156 ]
  
  == Skipped tests ===============================================================
  * On CRAN (29)
  * On Linux (2)
  * mlr3spatial cannot be loaded (1)
  * sperrorest cannot be loaded (20)
  * until mlr3filters >= 0.5.1 in on CRAN - including as_task assertion fix (1)
  
  == Failed tests ================================================================
  -- Error (test-2-autoplot.R:276:3): plot() works for 'spcv_tiles' --------------
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'sperrorest'
  Backtrace:
      x
   1. +-rsp$instantiate(task) at test-2-autoplot.R:276:2
   2. | \-mlr3spatiotempcv:::.__ResamplingRepeatedSpCVTiles__instantiate(...)
   3. |   \-private$.sample(task$row_ids, task$coordinates())
   4. |     \-mlr3spatiotempcv:::.__ResamplingRepeatedSpCVTiles__.sample(...)
   5. \-base::loadNamespace(x)
   6.   \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   7.     \-base (local) withOneRestart(expr, restarts[[1L]])
   8.       \-base (local) doWithOneRestart(return(expr), restart)
  
  [ FAIL 1 | WARN 0 | SKIP 53 | PASS 1156 ]
  Error: Test failures
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'mlr3spatiotempcv.Rmd' using rmarkdown
--- finished re-building 'mlr3spatiotempcv.Rmd'

--- re-building 'spatiotemp-viz.Rmd' using rmarkdown
Quitting from lines 91-149 (spatiotemp-viz.Rmd) 
Error: processing vignette 'spatiotemp-viz.Rmd' failed with diagnostics:
there is no package called 'sperrorest'
--- failed re-building 'spatiotemp-viz.Rmd'

SUMMARY: processing the following file failed:
  'spatiotemp-viz.Rmd'

Error: Vignette re-building failed.
Execution halted
Installation failed.
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mlrCPO.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following files/directories:
  'MM2S_Predictions_Heatmap.pdf' 'MM2S_Predictions_StackedBarplot.pdf'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./mmap.h:104:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./mmap.h:108:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./mmap.h:117:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  mmap.c:74:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  mmap.c:286:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  types.c:4:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mmap.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'Flury'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Package suggested but not available for checking: 'alstructure'

Packages which this enhances but not available for checking:
  'miraculix', 'MoBPSmaps'
Running 'testthat.R' [4s/7s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > 
  > library(testthat)
  > library(mockthat)
  
  Attaching package: 'mockthat'
  
  The following objects are masked from 'package:testthat':
  
      local_mock, with_mock
  
  > 
  > test_check("mockthat")
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 65 ]
  
  == Failed tests ================================================================
  -- Failure (test-with-mock.R:51:3): can mock in package ------------------------
  `res` not identical to "mocked request".
  Modes: list, character
  names for target but not for current
  Length mismatch: comparison on first 1 components
  Component 1: Modes: list, character
  Component 1: names for target but not for current
  Component 1: Component 1: 1 string mismatch
  -- Failure (test-with-mock.R:60:3): can mock in package ------------------------
  `res` not identical to "mocked request".
  1/1 mismatches
  x[1]: "4"
  y[1]: "mocked request"
  -- Failure (test-with-mock.R:70:3): can create mock from return value ----------
  `res` not identical to "mocked request".
  Modes: list, character
  names for target but not for current
  Length mismatch: comparison on first 1 components
  Component 1: Modes: list, character
  Component 1: names for target but not for current
  Component 1: Component 1: 1 string mismatch
  -- Failure (test-with-mock.R:80:3): can create mock from return value ----------
  `res` not identical to "mocked request".
  Modes: list, character
  names for target but not for current
  Length mismatch: comparison on first 1 components
  Component 1: Modes: list, character
  Component 1: names for target but not for current
  Component 1: Component 1: 1 string mismatch
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 65 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
checkRd: (-1) modeest-package.Rd:150: Escaped LaTeX specials: \&
checkRd: (-1) vieu.Rd:56: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) polypes.Rd:17: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) CHECKSUCCESS.Rd:44: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    * efourier with default norm=TRUE now messages about how wrong it may be
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  monomvn_init.c:10:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  monomvn_init.c:12:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/monomvn.Rcheck/00install.out' for details.
checkRd: (-1) bmonomvn.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) bmonomvn.Rd:149: Escaped LaTeX specials: \&
checkRd: (-1) returns.Rd:31: Escaped LaTeX specials: \$
checkRd: (-1) returns.Rd:37: Escaped LaTeX specials: \&
Found the following significant warnings:
  ordsampler.c:59:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ordsampler.c:113:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ordsampler.c:124:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ordsampler.c:386:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ordsampler.c:544:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ordsampler.c:560:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ordsampler.c:710:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ordsampler.c:1102:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sampler.c:52:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sampler.c:149:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sampler.c:158:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sampler.c:729:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/monoreg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: 'mlrCPO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  exhaust_bic.cpp:269:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  exhaust_bic.cpp:290:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mosum.Rcheck/00install.out' for details.
Running examples in 'move-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: thinTrackTime
> ### Title: Thinning trajectories to a specific time interval or distance.
> ### Aliases: thinTrackTime thinDistanceAlongTrack
> ###   thinTrackTime,.MoveTrackSingle-method
> ###   thinDistanceAlongTrack,.MoveTrackSingle-method
> 
> ### ** Examples
> 
> data("leroy")
> leroysub <- leroy[1:200]
> ### selecting those segments that have a time interval of 15mins pulsminus 5mins
> thintime <- thinTrackTime(leroysub, interval = as.difftime(15, units='mins'),
+                           tolerance = as.difftime(5, units='mins'))
Error in validityMethod(as(object, superClass)) : 
  Burst ids need to be one shorter than the number of coordinates since it is a segment property
Calls: thinTrackTime ... validObject -> anyStrings -> isTRUE -> validityMethod
Execution halted
Package suggested but not available for checking: 'corpus.useR.2008.abstracts'
Found the following significant warnings:
  mpboost.cpp:88:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MPBoost.Rcheck/00install.out' for details.
checkRd: (-1) Context.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) psyfun.boot.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) psyfun.boot.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) genotype_data.Rd:7: Escaped LaTeX specials: \_
checkRd: (-1) genotype_data.Rd:18: Escaped LaTeX specials: \_
checkRd: (-1) phenotype_data.Rd:15: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) F.huggins.estim.Rd:199: Escaped LaTeX specials: \$ \$
checkRd: (-1) F.huggins.estim.Rd:205: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:206: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:207: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:208: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:209: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:210: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:212: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:213: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:214: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:215: Escaped LaTeX specials: \$
checkRd: (-1) lines.cjs.Rd:15: Escaped LaTeX specials: \$
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  combination.c:8:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  combination.c:63:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  product.c:10:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  product.c:62:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mrfse.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Mapping.cpp:53:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Mapping.cpp:61:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Mapping.cpp:91:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Mapping.cpp:99:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MSGARCH.Rcheck/00install.out' for details.
Found the following files/directories:
  'test.txt'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Cmicrosim.c:789:18: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Cmicrosim.c:798:18: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Cmicrosim.c:965:16: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Cmicrosim.c:1018:16: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  Cmicrosim.c:1068:16: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mSimCC.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Acceleration.pdf' 'File1.pdf' 'Forecast.pdf' 'Series.pdf'
  'Velocity.pdf'
checkRd: (-1) ml_g.Rd:47: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) ms_sev.Rd:31: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mkjnw.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) mkjnw.Rd:6: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  muhaz.c:1367:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mudens.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) MultBiplotR-package.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) MultBiplotR-package.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) print.multcompLetters.Rd:20: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  src/core/attributes/Value.hpp:34:12: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  src/core/attributes/Value.hpp:34:17: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  src/core/attributes/Value.hpp:49:64: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  src/core/attributes/Value.hpp:49:69: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/multinet.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'rrelaxiv'
checkRd: (-1) mPhen.defineOptions.Rd:4: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  PP_IndexC.c:76:78: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  PP_IndexC.c:79:49: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MVar.pt.Rcheck/00install.out' for details.
Found the following significant warnings:
  PP_IndexC.c:76:78: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  PP_IndexC.c:79:49: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MVar.Rcheck/00install.out' for details.
checkRd: (-1) bal.Rd:156: Escaped LaTeX specials: \&
checkRd: (-1) pkb.Rd:14: Escaped LaTeX specials: \# \# \#
'LazyData' is specified without a 'data' directory
checkRd: (-1) mvr.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ajour.c:25:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ajour.c:26:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  n1qn1_all.c:25:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  n1qn1_all.c:26:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  proj.c:20:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  proj.c:21:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  satur.c:20:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  satur.c:21:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/n1qn1.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package which this enhances but not available for checking: 'asreml'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    PREVIOUS (Incomplete below)
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 're2r'
Found the following significant warnings:
  namespace.c:4:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/namespace.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Found the following significant warnings:
  pdf_debye.c:1039:162: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/nanop.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'spatialClust'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Version (2018-01-22)
    Version  (2017-08-22)
    Version
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 're2r'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Slightly modified tests
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  subsetAndUpdate.cpp:13:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  subsetAndUpdate.cpp:35:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  subsetAndUpdate.cpp:118:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  subsetAndUpdateTime.cpp:13:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  subsetAndUpdateTime.cpp:35:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  subsetAndUpdateTime.cpp:118:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/neatRanges.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
BugReports field is not a suitable URL but contains an email address:
   use the Contact field instead
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) netCoin-package.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) exportToTSPlibFormat.Rd:32: Escaped LaTeX specials: \_
checkRd: (-1) exportToTSPlibFormat.Rd:32: Escaped LaTeX specials: \_ \_
checkRd: (-1) makeNetwork.Rd:31: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rcpp_lin_alg.cpp:9:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  rcpp_lin_alg.cpp:9:35: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  rcpp_lin_alg.cpp:30:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  rcpp_lin_alg.cpp:48:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  rcpp_lin_alg.cpp:48:35: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/netgsa.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'fastshp'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  MMModelClass.cpp:801:25: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/NetMix.Rcheck/00install.out' for details.
Found the following significant warnings:
  triad_census_col.cpp:10:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  triad_census_col.cpp:17:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/netUtils.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./network.h:17:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./network.h:18:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./network.h:19:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./network.h:20:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/networkABC.Rcheck/00install.out' for details.
checkRd: (-1) NetworkChange.Rd:163: Escaped LaTeX specials: \&
checkRd: (-1) NetworkChangeRobust.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) NetworkStatic.Rd:142: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'map.png' 'maze.html'
GNU make is a SystemRequirements.
Running examples in 'neurobase-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: boxplot.nifti
> ### Title: Boxplot of Values in an Image
> ### Aliases: boxplot.nifti boxplot.anlz
> 
> ### ** Examples
> 
> img = nifti(array(rnorm(10^3), dim = rep(10, 3)))
> mask = img > 0
> boxplot(img)
> boxplot(img, mask = mask)
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Error in plot.window(xlim = xlim, ylim = ylim, log = log, yaxs = pars$yaxs) : 
  need finite 'ylim' values
Calls: boxplot ... boxplot.default -> do.call -> <Anonymous> -> plot.window
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'neurobase.Rmd' using rmarkdown
Quitting from lines 459-460 (neurobase.Rmd) 
Error: processing vignette 'neurobase.Rmd' failed with diagnostics:
need at least 2 points to select a bandwidth automatically
--- failed re-building 'neurobase.Rmd'

--- re-building 'nifti_basics.Rmd' using rmarkdown
--- finished re-building 'nifti_basics.Rmd'

--- re-building 'simple_io.Rmd' using rmarkdown
trying URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
Content type 'application/gzip' length 21807043 bytes (20.8 MB)
==================================================
downloaded 20.8 MB

--- finished re-building 'simple_io.Rmd'

SUMMARY: processing the following file failed:
  'neurobase.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'ANTsR', 'ITKR', 'extrantsr', 'MNITemplate', 'RAVEL', 'neurodata'
Found the following math rendering problems:
nBartlett.Rd:45-50: Undefined control sequence: \raise in ... }
      \over {{\raise0.7ex\hbox{$1$}...
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  getseed.c:41:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  getseed.c:60:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  getseed.c:81:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  getseed.c:83:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ngram_native.c:10:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ngram.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rcpp_rmultinom.cpp:40:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/NHMM.Rcheck/00install.out' for details.
checkRd: (-1) graphresU.fun.Rd:72: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  RcppUtils.cpp:48:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  RcppNimbleUtils.cpp:298:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  nimDists.cpp:159:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  nimDists.cpp:189:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  nimDists.cpp:206:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  nimDists.cpp:236:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  nimDists.cpp:263:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  nimDists.cpp:315:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  nimDists.cpp:361:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  nimDists.cpp:380:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  nimbleGraph.cpp:183:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/nimble.Rcheck/00install.out' for details.
Package which this enhances but not available for checking: 'jpndistrict'
Malformed Description field: should contain one or more complete sentences.
Error(s) in re-building vignettes:
  ...
--- re-building 'DataInBrief.Rmd' using knitr
Quitting from lines 219-271 (DataInBrief.Rmd) 
Error: processing vignette 'DataInBrief.Rmd' failed with diagnostics:
unused argument (origin = "1960-01-01")
--- failed re-building 'DataInBrief.Rmd'

--- re-building 'JEMBE.Rmd' using knitr
Quitting from lines 514-566 (JEMBE.Rmd) 
Error: processing vignette 'JEMBE.Rmd' failed with diagnostics:
unused argument (origin = "1960-01-01")
--- failed re-building 'JEMBE.Rmd'

SUMMARY: processing the following files failed:
  'DataInBrief.Rmd' 'JEMBE.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:11:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  nleqslv.c:4:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  nwout.c:49:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/nleqslv.Rcheck/00install.out' for details.
Found the following significant warnings:
  nlmefit.c:35:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/nlme.Rcheck/00install.out' for details.
checkRd: (-1) Dmean.Rd:62: Escaped LaTeX specials: \&
checkRd: (-1) Dvar.Rd:63: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) nltm.control.Rd:29: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
checkRd: (-1) Frobenius-nmf.Rd:141: Escaped LaTeX specials: \#
checkRd: (-1) KL-nmf.Rd:158: Escaped LaTeX specials: \#
checkRd: (-1) NMFStrategyIterative-class.Rd:69: Escaped LaTeX specials: \#
checkRd: (-1) NMFstd-class.Rd:179: Escaped LaTeX specials: \#
checkRd: (-1) nmf.Rd:755: Escaped LaTeX specials: \#
checkRd: (-1) nmf_update_KL.Rd:87: Escaped LaTeX specials: \#
checkRd: (-1) nmf_update_euclidean.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) offset-nmf.Rd:144: Escaped LaTeX specials: \#
Running examples in 'NMF-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: profplot
> ### Title: Plotting Expression Profiles
> ### Aliases: profplot profplot.default
> ### Keywords: aplot
> 
> ### ** Examples
> 
> ## Don't show: 
> # roxygen generated flag
> options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
> ## End(Don't show)
> 
> # create a random target matrix
> v <- rmatrix(35, 10)
> 
> # fit a single NMF model
> res <- nmf(v, 3)
> profplot(res)
> 
> # fit a multi-run NMF model
> res2 <- nmf(v, 3, nrun=2)
# NOTE - CRAN check detected: limiting maximum number of cores [2/32]
> # ordering according to first profile
> profplot(res2, Colv=1) # increasing
> 
> # draw a profile correlation plot: this show how the basis components are
> # returned in an unpredictable order
> profplot(res, res2)
Error in col["alpha", ] <- as.character(as.hexmode(alpha)) : 
  incorrect number of subscripts on matrix
Calls: profplot ... <Anonymous> -> .set.list.defaults -> expand_list -> alphacol
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./veclib.h:302:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/nncc.Rcheck/00install.out' for details.
Found the following significant warnings:
  geodesic.c:57:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/nngeo.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Other ideas
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'mlrCPO'
Error(s) in re-building vignettes:
  ...
--- re-building 'nntrf.Rmd' using rmarkdown
--- finished re-building 'nntrf.Rmd'

--- re-building 'nntrf_regresion.Rmd' using rmarkdown
Quitting from lines 21-25 (nntrf_regresion.Rmd) 
Error: processing vignette 'nntrf_regresion.Rmd' failed with diagnostics:
there is no package called 'mlrCPO'
--- failed re-building 'nntrf_regresion.Rmd'

--- re-building 'nntrf_tuning.Rmd' using rmarkdown
Quitting from lines 20-24 (nntrf_tuning.Rmd) 
Error: processing vignette 'nntrf_tuning.Rmd' failed with diagnostics:
there is no package called 'mlrCPO'
--- failed re-building 'nntrf_tuning.Rmd'

SUMMARY: processing the following files failed:
  'nntrf_regresion.Rmd' 'nntrf_tuning.Rmd'

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: 'hurricaneexposuredata'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) simulatePop.Rd:43: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    norgeo (development version)
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:16:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/norm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) prepareplot.Rd:64: Escaped LaTeX specials: \#
checkRd: (-1) prepareplot.Rd:68: Escaped LaTeX specials: \#
checkRd: (-1) nppbib.Rd:28: Escaped LaTeX specials: \#
Running 'testthat.R' [48s/56s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > #' Copyright(c) 2017-2020 R. Mark Sharp
  > #' This file is part of nprcgenekeepr
  > library(testthat)
  > library(nprcgenekeepr)
  > test_check("nprcgenekeepr")
  15 15 
  15 15 
  [ FAIL 1 | WARN 3 | SKIP 19 | PASS 747 ]
  
  == Skipped tests ===============================================================
  * On CRAN (1)
  * Sys.info()[names(Sys.info()) == "user"] == "msharp" is not TRUE (18)
  
  == Failed tests ================================================================
  -- Failure (test_getDatedFilename.R:12:3): getDatedFilename form correctly dated file name --
  stri_sub(getDatedFilename("testName"), 21) not equal to "testName".
  1/1 mismatches
  x[1]: "734327_testName"
  y[1]: "testName"
  
  [ FAIL 1 | WARN 3 | SKIP 19 | PASS 747 ]
  Error: Test failures
  Execution halted
Found the following significant warnings:
  kernel.c:540:33: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/np.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
  ...
--- re-building 'bhav.Rmd' using rmarkdown
--- finished re-building 'bhav.Rmd'

--- re-building 'bhavfos.Rmd' using rmarkdown
--- finished re-building 'bhavfos.Rmd'

--- re-building 'bhavpr.Rmd' using rmarkdown
--- finished re-building 'bhavpr.Rmd'

--- re-building 'bhavs.Rmd' using rmarkdown
--- finished re-building 'bhavs.Rmd'

--- re-building 'bhavtoday.Rmd' using rmarkdown
--- finished re-building 'bhavtoday.Rmd'

--- re-building 'dailydata.Rmd' using rmarkdown
--- finished re-building 'dailydata.Rmd'

--- re-building 'daytomonth.Rmd' using rmarkdown
--- finished re-building 'daytomonth.Rmd'

--- re-building 'daytoweek.Rmd' using rmarkdown
--- finished re-building 'daytoweek.Rmd'

--- re-building 'fdii.Rmd' using rmarkdown
--- finished re-building 'fdii.Rmd'

--- re-building 'fobhav.Rmd' using rmarkdown
trying URL 'https://archives.nseindia.com/content/historical/DERIVATIVES/2021/JUL/fo01JUL2021bhav.csv.zip'
Content type 'application/zip' length 593613 bytes (579 KB)
==================================================
downloaded 579 KB

--- finished re-building 'fobhav.Rmd'

--- re-building 'fobhavtoday.Rmd' using rmarkdown
--- finished re-building 'fobhavtoday.Rmd'

--- re-building 'nseindex.Rmd' using rmarkdown
Quitting from lines 22-24 (nseindex.Rmd) 
Error: processing vignette 'nseindex.Rmd' failed with diagnostics:
cannot open the connection to 'https://www1.nseindia.com/homepage/Indices1.json'
--- failed re-building 'nseindex.Rmd'

--- re-building 'nseipo.Rmd' using rmarkdown
--- finished re-building 'nseipo.Rmd'

--- re-building 'nselive.Rmd' using rmarkdown
--- finished re-building 'nselive.Rmd'

--- re-building 'nseopen.Rmd' using rmarkdown
--- finished re-building 'nseopen.Rmd'

--- re-building 'nsetree.Rmd' using rmarkdown
--- finished re-building 'nsetree.Rmd'

SUMMARY: processing the following file failed:
  'nseindex.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  ./vadr.h:55:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./promises.h:5:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dots.c:5:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  promises.c:93:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  vadr.c:22:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/nseval.Rcheck/00install.out' for details.
checkRd: (-1) Ardechedata.Rd:18: Escaped LaTeX specials: \_
checkRd: (-1) nsRFA-package.Rd:231: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Running examples in 'numform-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: f_12_hour
> ### Title: Format 12 Hour Times
> ### Aliases: f_12_hour f_12_hour.default f_12_hour.integer
> ###   f_12_hour.numeric f_12_hour.hms ff_12_hour
> 
> ### ** Examples
> 
> f_12_hour(Sys.time())
Error in .POSIXct(x, tz, ...) : unused argument (origin = "1960-01-01")
Calls: f_12_hour ... f_12_hour.default -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'obAnalytics-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotCurrentDepth
> ### Title: Visualise order book depth at any given point in time.
> ### Aliases: plotCurrentDepth
> 
> ### ** Examples
> 
> 
> # get a limit order book for a specific point in time, limited to +- 150bps
> # above/below best bid/ask price.
> lob <- orderBook(lob.data$events,
+     tp=as.POSIXct("2015-05-01 04:38:17.429", tz="UTC"), bps.range=150)
> 
> # visualise the order book liquidity.
> plotCurrentDepth(lob, volume.scale=10^-8)
Error in .POSIXct(x, tz, ...) : unused argument (origin = "1970-01-01")
Calls: plotCurrentDepth ... labs -> dots_list -> as.POSIXct -> as.POSIXct.default
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'guide.Rmd' using rmarkdown
Quitting from lines 375-382 (guide.Rmd) 
Error: processing vignette 'guide.Rmd' failed with diagnostics:
unused argument (origin = "1970-01-01")
--- failed re-building 'guide.Rmd'

SUMMARY: processing the following file failed:
  'guide.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'morse'
Found the following significant warnings:
  gutsRedIT.c:34:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gutsRedIT.c:58:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gutsRedSD.c:36:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gutsRedSD.c:64:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  odeGUTS_init.c:5:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  odeGUTS_init.c:6:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/odeGUTS.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  omxRAMExpectation.cpp:677:24: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  omxRAMExpectation.cpp:682:25: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/OpenMx.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Older changes
    trunk
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'openNLPmodels.en'
Found the following significant warnings:
  ./utils.h:3:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  error.c:13:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  info.c:14:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  info.c:36:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keygen.c:72:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keygen.c:93:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ssl.c:86:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/openssl.Rcheck/00install.out' for details.
Found the following significant warnings:
  load_workbook.cpp:122:15: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  load_workbook.cpp:142:17: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  read_workbook.cpp:553:37: warning: format specifies type 'unsigned short' but the argument has type 'int' [-Wformat]
  read_workbook.cpp:563:39: warning: format specifies type 'unsigned short' but the argument has type 'int' [-Wformat]
  read_workbook.cpp:623:35: warning: format specifies type 'unsigned short' but the argument has type 'int' [-Wformat]
  read_workbook.cpp:640:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  write_data.cpp:106:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  write_data.cpp:137:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  write_file.cpp:251:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/openxlsx.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Package suggested but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'Graph_layout_Doptbd_trtE'
Malformed Title field: should not end in a period.
Package which this enhances but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
checkRd: (-1) quad_3D.Rd:22: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rrelaxiv'
Found the following files/directories:
  'Graph_layout_Doptrcd_trtE'
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Forest.cpp:361:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ordinalForest.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  utilityFuns.c:29:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilityFuns.c:30:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilityFuns.c:31:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilityFuns.c:32:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilityFuns.c:33:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilityFuns.c:37:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilityFuns.c:41:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilityFuns.c:42:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utilityFuns.c:43:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ordinal.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./zzz.h:4:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./zzz.h:6:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  zzz.c:22:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  zzz.c:58:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  onig/st.h:69:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  onig/st.h:70:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  onig/st.h:128:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  onig/st.h:129:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  onig/st.c:1483:46: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  onig/st.c:1567:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ore.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'cluster of fitted mean data.eps' 'cluster of fitted mean data.txt'
  'cluster of raw data.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./cleancall.h:32:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cleancall.c:40:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring-macos.c:3:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring-secret-service.c:3:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  keyring-wincred.c:3:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/oskeyring.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  osqp_solve_interface.cpp:200:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  osqp_solve_interface.cpp:203:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  osqp_solve_interface.cpp:206:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  osqp_solve_interface.cpp:230:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  osqp_solve_interface.cpp:238:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  osqp_solve_interface.cpp:245:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/osqp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following files/directories:
  'result.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Changes
'LazyData' is specified without a 'data' directory
checkRd: (-1) residuals_paco.Rd:10: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'CorShrink'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'Imap'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gameofthrones'
Running examples in 'paletteknife-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: autoaxis
> ### Title: Auto Axis Tool
> ### Aliases: autoaxis
> 
> ### ** Examples
> 
> plot(sunspots) # This time series is actually given in decimal years
>   autoaxis(side=3, major=50, major_grid='coral', minor=10, minor_grid=TRUE, spacing=TRUE)
>   autoaxis(side=4, major=11, minor=25, spacing=FALSE, las=2, cex.axis=0.5, tck=0.02)
NULL
> 
> plot(seq(as.POSIXct('2020-01-01'),as.POSIXct('2020-01-03'),length.out=1e3),
+     rnorm(1e3), xlab='POSIXct', xaxt='n')
>   autoaxis(side=1, major='day', minor='3 hour', format='%x')
NULL
>   # Shortcut method to make a default dense grid
>   autoaxis(side='3')
>   autoaxis(side=2)
>   # You can always request a datetime axis (side='4' not 4L) but it will be nonsense
>   autoaxis(side='4', col='red')
Error in .POSIXct(unclass(x) * 86400, tz = tz, ...) : 
  unused argument (origin = "1970-01-01")
Calls: autoaxis -> as.POSIXct.Date
Execution halted
Running 'testthat.R' [6s/8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(PAMmisc)
  > 
  > test_check("PAMmisc")
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 76 ]
  
  == Failed tests ================================================================
  -- Error (test-pgDatabase.R:18:5): Test gps adding -----------------------------
  Error: Not able to properly convert UTC to POSIXct format, check format argument.
  Backtrace:
      x
   1. \-PAMmisc::addPgGps(tmpDb, tmpFile, source = "csv", format = "%Y-%m-%d %H:%M:%S") at test-pgDatabase.R:18:4
   2.   \-PAMmisc:::fmtGps(gps, source, format, tz)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 76 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
checkRd: (-1) btsdemo.Rd:22: Escaped LaTeX specials: \_
checkRd: (-1) btsdemo.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) btsdemo.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) btsdemo.Rd:25: Escaped LaTeX specials: \_
checkRd: (-1) btsdemo.Rd:26: Escaped LaTeX specials: \_
checkRd: (-1) btsdemo.Rd:30: Escaped LaTeX specials: \_
Found the following HTML validation problems:
pvargmm.html:141:1: Warning: <center> element removed from HTML5
'LazyData' is specified without a 'data' directory
checkRd: (-1) pan.bd.Rd:65: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Found the following significant warnings:
  ./socp.h:42:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./socp.h:43:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./socp.h:44:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./socp.h:45:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./socp.h:48:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./socp.h:49:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./socp.h:52:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./socp.h:55:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./socp.h:56:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/parma.Rcheck/00install.out' for details.
Found the following significant warnings:
  mingw.c:24:54: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/parsedate.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'co2' 'co2.1' 'co2.2' 'co2s.1' 'co2s.2' 'ctm.1' 'ctm.2' 'm' 'm.1'
  'm.2' 'test' 'test.1' 'test.2' 'testa.1' 'testa.2' 'xfile.1'
  'xfile.2'
Found the following significant warnings:
  init.c:12:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/party.Rcheck/00install.out' for details.
checkRd: (-1) regul.Rd:52: Escaped LaTeX specials: \# \# \#
checkRd: (-1) regul.Rd:52: Escaped LaTeX specials: \#
Found the following files/directories:
  'Minimal-concordance.tex' 'Minimal.Rnw' 'Minimal.pdf'
  'Minimal.synctex.gz' 'Minimal.tex' 'figure'
'LazyData' is specified without a 'data' directory
Checking should be performed on sources prepared by 'R CMD build'.
GNU make is a SystemRequirements.
checkRd: (-1) plot-methods.Rd:55: Escaped LaTeX specials: \_
checkRd: (-1) plot-methods.Rd:125: Escaped LaTeX specials: \_
checkRd: (-1) glue_search_tables.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) dynamodb_batch_get_item.Rd:32: Escaped LaTeX specials: \#
checkRd: (-1) dynamodb_delete_item.Rd:81: Escaped LaTeX specials: \#
checkRd: (-1) dynamodb_get_item.Rd:55: Escaped LaTeX specials: \#
checkRd: (-1) dynamodb_put_item.Rd:98: Escaped LaTeX specials: \#
checkRd: (-1) dynamodb_query.Rd:237: Escaped LaTeX specials: \#
checkRd: (-1) dynamodb_scan.Rd:174: Escaped LaTeX specials: \#
checkRd: (-1) dynamodb_update_item.Rd:177: Escaped LaTeX specials: \#
checkRd: (-1) elasticache_create_cache_cluster.Rd:291: Escaped LaTeX specials: \#
checkRd: (-1) elasticache_create_replication_group.Rd:329: Escaped LaTeX specials: \#
checkRd: (-1) cloudwatchlogs_create_log_group.Rd:30: Escaped LaTeX specials: \#
checkRd: (-1) licensemanager_create_license_configuration.Rd:23: Escaped LaTeX specials: \#
checkRd: (-1) licensemanager_create_license_configuration.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) opsworks_update_layer.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) opsworkscm_create_server.Rd:76: Escaped LaTeX specials: \#
checkRd: (-1) ssm_send_command.Rd:47: Escaped LaTeX specials: \$
checkRd: (-1) ssm_send_command.Rd:49: Escaped LaTeX specials: \$
checkRd: (-1) apigatewayv2_create_stage.Rd:34: Escaped LaTeX specials: \#
checkRd: (-1) apigatewayv2_update_stage.Rd:36: Escaped LaTeX specials: \#
checkRd: (-1) iam_update_account_password_policy.Rd:21: Escaped LaTeX specials: \#
Found the following significant warnings:
  pbatR_init.c:11:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  pbatR_init.c:17:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pbatR.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./R_zmq.h:13:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./R_zmq.h:30:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./R_zmq.h:51:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./R_zmq.h:52:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./R_zmq.h:59:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./R_zmq.h:60:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  R_zmq_context.c:7:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  R_zmq_utility.c:26:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  R_zmq_message.c:8:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  R_zmq_poll.c:39:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  R_zmq_poll.c:48:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pbdZMQ.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./PBSddesolve.h:27:15: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  PBSddesolve.c:149:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PBSddesolve.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pcaL1.Rcheck/00install.out' for details.
checkRd: (-1) l1pcastar.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) pcaL1-package.Rd:52: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  PCAgrid.cpp:548:140: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  pcaPP_init.c:1:81: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  pcaPP_init.c:1:100: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  pcaPP_init.c:1:103: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  pcaPP_init.c:1:123: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pcaPP.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) Dist.Rd:50: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
Found the following significant warnings:
  ./strptime_360.h:221:1: warning: 'static' function 'w_strptime_internal' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PCICt.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  kepdf.c:29:32: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pdfCluster.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'PythonInR'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) Peacock.test-package.Rd:28: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  PeakSegJoint_interface.c:113:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PeakSegJoint.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./pearson.h:100:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  QuadDouble.c:497:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  QuadDouble.c:508:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  pearsonIV.c:4:17: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PearsonDS.Rcheck/00install.out' for details.
Package which this enhances but not available for checking: 'crrstep'
checkRd: (-1) pec.Rd:250: Escaped LaTeX specials: \&
checkRd: (-1) pec.Rd:251: Escaped LaTeX specials: \&
checkRd: (-1) pec.Rd:256: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'georob'
GNU make is a SystemRequirements.
checkRd: (-1) breslow.Rd:27: Escaped LaTeX specials: \# \#
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) simulate.data.Rd:27: Escaped LaTeX specials: \_ \_
checkRd: (-1) simulate.data.Rd:28: Escaped LaTeX specials: \_ \_
checkRd: (-1) my.bspline.Rd:38: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) my.bspline.Rd:21: Escaped LaTeX specials: \$ \$ \$ \$ \$ \$
checkRd: (-1) my.bspline.Rd:27: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) pendensity.Rd:52: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:57: Escaped LaTeX specials: \$ \$
checkRd: (-1) pendensity.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:82: Escaped LaTeX specials: \$ \$
checkRd: (-1) pendensity.Rd:96: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:100: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:105: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:109: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:13:51: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Peptides.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) CAPM.RiskPremium.Rd:67: Escaped LaTeX specials: \&
checkRd: (-1) chart.ECDF.Rd:31: Escaped LaTeX specials: \#
checkRd: (-1) managers.Rd:8: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'DMwR'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'dendextendRcpp'
Found the following files/directories:
  'permus_per_dist_4' 'permus_per_shape_bin_4_0'
  'permus_per_shape_bin_4_1' 'permus_per_shape_bin_4_2'
  'permus_per_shape_bin_4_3'
'LazyData' is specified without a 'data' directory
checkRd: (-1) jackal.Rd:32: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Fixed issues
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) PatentsRD.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) PatentsRD.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) PatentsRDUS.Rd:4: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'animation.gif'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  ml.c:39:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/phangorn.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'test.pdf'
'LazyData' is specified without a 'data' directory
checkRd: (-1) connectedSets.Rd:27: Escaped LaTeX specials: \_ \_
checkRd: (-1) connectedSets.Rd:29: Escaped LaTeX specials: \_ \_
checkRd: (-1) connectedSets.Rd:31: Escaped LaTeX specials: \_ \_
checkRd: (-1) maxConnectedSet.Rd:35: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:37: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:39: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:41: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:45: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:47: Escaped LaTeX specials: \_ \_
Found the following significant warnings:
  ../src/correlation.h:49:28: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  ../src/correlation.h:94:27: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  ../src/correlation.h:137:28: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/philentropy.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  '1khz.wav' 'snd.wav'
checkRd: (-1) 11_d.EMControl.Rd:52: Escaped LaTeX specials: \_
checkRd: (-1) plotdots.Rd:33: Escaped LaTeX specials: \#
checkRd: (-1) phylo4d-methods.Rd:209: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) GarlandJanis.IC.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.IC.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.Original.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.Original.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:7: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
checkRd: (-1) Kcalc.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) phylosignal.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) traitgram.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) utility.Rd:37: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Package suggested but not available for checking: 'ggsubplot'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) sanitize_latex.Rd:49: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:17:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pkgcache.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Running examples in 'pkgmaker-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: alphacol
> ### Title: Colour utilities
> ### Aliases: alphacol
> 
> ### ** Examples
> 
> 
> # Alphas
> alphacol('red') # do nothing
Error in apply(col, 2, function(x) paste("#", paste(x, collapse = ""),  : 
  dim(X) must have a positive length
Calls: alphacol -> apply
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'P2Run.csv' 'P2Run.html' 'P2Run.png'
Packages suggested but not available for checking:
  'harmony', 'monocle3', 'ProjecTILs', 'SeuratWrappers'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) PLS_beta_wvc.Rd:5: Escaped LaTeX specials: \_
checkRd: (-1) plsRbeta.Rd:104: Escaped LaTeX specials: \^
Package suggested but not available for checking: 'plsdepot'
checkRd: (-1) PLS_glm_wvc.Rd:5: Escaped LaTeX specials: \_
checkRd: (-1) PLS_lm_wvc.Rd:5: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following math rendering problems:
1dpoilog.Rd:31: Undefined control sequence: \emph in \code{nu}\,\emph{y}
Running 'testthat.R' [46s/56s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pointblank)
  
  Attaching package: 'pointblank'
  
  The following object is masked from 'package:testthat':
  
      matches
  
  > library(dittodb)
  Loading required package: DBI
  > test_check("pointblank")
  [ FAIL 5 | WARN 0 | SKIP 26 | PASS 1104 ]
  
  == Skipped tests ===============================================================
  * On CRAN (26)
  
  == Failed tests ================================================================
  -- Failure (test-create_agent.R:77:3): Creating a valid `agent` object is possible --
  agent\$label does not match "^\\[[0-9]{4}-[0-9]{2}-[0-9]{2}\\|[0-9]{2}:[0-9]{2}:[0-9]{2}\\]$".
  Actual value: "\[2022-10-07\|16:40:43\.438317\]"
  Backtrace:
      x
   1. \-testthat::expect_match(agent$label, "^\\[[0-9]{4}-[0-9]{2}-[0-9]{2}\\|[0-9]{2}:[0-9]{2}:[0-9]{2}\\]$") at test-create_agent.R:77:2
   2.   \-testthat:::expect_match_(...)
  -- Failure (test-x_list.R:34:3): An x-list for a step is structurally correct --
  grepl(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  -- Failure (test-x_list.R:112:3): An x-list for a step is structurally correct --
  grepl(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  -- Failure (test-x_list.R:201:3): A complete x-list is structurally correct ----
  grepl(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  -- Failure (test-x_list.R:305:3): A complete x-list is structurally correct ----
  grepl(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 5 | WARN 0 | SKIP 26 | PASS 1104 ]
  Error: Test failures
  In addition: Warning message:
  call dbDisconnect() when finished working with a connection 
  Execution halted
Package suggested but not available for checking: 'INLA'
Package unavailable to check Rd xrefs: 'INLA'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rwrapper.c:274:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/poismf.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) carcinoma.Rd:8: Escaped LaTeX specials: \&
checkRd: (-1) poLCA.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) poLCA.Rd:69: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'pollimetrydata'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'polyfreqs-mcmc.out'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'test-data.R' 'test-inits.R' 'test.bug' 'test.cmd'
Installation failed.
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pompp.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) Kendall.Rd:73: Escaped LaTeX specials: \&
checkRd: (-1) countCDFxt.Rd:63: Escaped LaTeX specials: \&
Packages suggested but not available for checking:
  'BASIX', 'WhopGenome', 'BlockFeST'
Found the following significant warnings:
  tabix/bedidx.c:20:1: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix/bgzf.c:50:1: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix/bgzf.c:138:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix/bam_endian.h:6:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix/index.c:49:1: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix/index.c:50:1: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix/index.c:808:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PopGenome.Rcheck/00install.out' for details.
checkRd: (-1) BayeScanR.Rd:7: Escaped LaTeX specials: \&
checkRd: (-1) MKT-methods.Rd:8: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'lfa'
Package suggested but not available for checking: 'RClone'
Found the following significant warnings:
  init.c:24:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  omp_test.c:7:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/poppr.Rcheck/00install.out' for details.
checkRd: (-1) genetic_distance.Rd:106: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) tradelist-class.Rd:91: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) bira2.Rd:91: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:146: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:148: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:150: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:126: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:219: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:221: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:223: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:225: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:227: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:229: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:231: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:233: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:235: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:237: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:301: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:303: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:305: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:307: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:309: Escaped LaTeX specials: \&
checkRd: (-1) med_pn.Rd:129: Escaped LaTeX specials: \&
Unknown package 'advclust' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) findRes.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) ppmlasso-package.Rd:42: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  sum.c:358:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  prod.c:27:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:28:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:29:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PreciseSums.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    CalEquation function can calculate intercept in multiple regression model with interaction
    New arguments summarymode added to fit2newdata(), predict3d() and ggPredict()
    New arguments xlab, ylab and zlab added to predict3d()
    New function gg_color_hue() and theme_bw2() added
    Bug-fixed
    New function restoreData2(), restoreData3()  added
    New function add_lines() added
    New function ggPredict() and predict3d() added
    New function fit2newdata() added
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'ffbase'
Unknown package 'ffbase' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) PReMiuM-package.Rd:80: Escaped LaTeX specials: \&
checkRd: (-1) profRegr.Rd:156: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'hista.png' 'plotcd.png' 'test.R' 'test.html' 'testR2html.R'
  'testglm.csv' 'testglm.html' 'testglm.tab'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:17:43: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:22:48: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  zhegv.c:232:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  zhegv.c:3715:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PRIMME.Rcheck/00install.out' for details.
checkRd: (-1) prim.box.Rd:60: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gurobi'
Packages suggested but not available for checking:
  'gurobi', 'rcbc', 'cplexAPI'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:10:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  procmap.c:20:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/procmaps.Rcheck/00install.out' for details.
checkRd: (-1) prodlim.Rd:119: Escaped LaTeX specials: \&
checkRd: (-1) plot.profileModel.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) profileModel.Rd:277: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'BayesianTools'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ProFit'
Found the following significant warnings:
  pause.c:10:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/profvis.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'SDMTools'
Package suggested but not available for checking: 'cin'
Found the following significant warnings:
  computeParentIonMass.c:59:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/protViz.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'rdt'
Package suggested but not available for checking: 'rdt'
Package suggested but not available for checking: 'rdt'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rdt'
Found the following significant warnings:
  util.c:6:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pscl.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Logistic_Model.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Logistic_Model.hpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  Main_CV_PSGD.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./PSGD.hpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./PS_Model.hpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Set_Diff.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  Main_PSGD.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  PSGD.cpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Stepwise_Split.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Step_Model.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Model_Functions.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  PS_Model.cpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  Step_Model.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PSGD.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) esa.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) meta_varcov.Rd:9: Escaped LaTeX specials: \&
checkRd: (-1) meta_varcov.Rd:120: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'fulltext'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  PP_IndexC.c:76:78: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  PP_IndexC.c:79:49: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Pursuit.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  pvarC.cpp:344:11: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  pvarC.cpp:591:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pvar.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) Ch05-detail.Rd:23: Escaped LaTeX specials: \#
checkRd: (-1) Ch05-detail.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) Ch05-detail.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) Ch05-detail.Rd:31: Escaped LaTeX specials: \#
checkRd: (-1) Ch05-detail.Rd:32: Escaped LaTeX specials: \#
checkRd: (-1) Ch0C-plot.cpd.PwrGSD.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) aid_st2.Rd:6: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'exampleplot_1_blockdist_1.png' 'exampleplot_1_blockdist_2.png'
  'exampleplot_1_blockdist_3.png' 'exampleplot_1_bootdist.png'
  'exampleplot_1_dist.png' 'exampleplot_1_histogramtest_EMD.png'
  'exampleplot_1_roc_dynamic.png' 'exampleplot_1_slidedist_1.png'
  'exampleplot_1_slidedist_2.png' 'exampleplot_1_slidedist_3.png'
  'exampleplot_1_trimmeddist.png' 'exampleplot_blockdist_1.png'
  'exampleplot_blockdist_2.png' 'exampleplot_blockdist_3.png'
  'exampleplot_bootdist.png' 'exampleplot_dist.png'
  'exampleplot_lim_dyn.png' 'exampleplot_lim_sig.png'
  'exampleplot_lim_sta.png' 'exampleplot_noc.png'
  'exampleplot_roc_dyn.png' 'exampleplot_roc_sta.png'
  'exampleplot_slidedist_1.png' 'exampleplot_slidedist_2.png'
  'exampleplot_slidedist_3.png' 'exampleplot_trimmeddist.png'
  'myworkflow_result.xml' 'test_2_roc_dynamic.png' 'test_4_dist.png'
  'test_5_blockdist_1.png' 'test_5_blockdist_2.png'
  'test_5_blockdist_3.png' 'test_6_slidedist_1.png'
  'test_6_slidedist_2.png' 'test_6_slidedist_3.png'
  'test_7_trimmeddist.png' 'test_8_bootdist.png' 'test_emd_1d.png'
  'test_emd_2d.png' 'test_jsd_1d.png' 'test_jsd_2d.png'
  'test_kld_1d.png' 'test_kld_2d.png' 'test_ms_1d.png' 'test_ms_2d.png'
  'test_rms_1d.png' 'test_rms_2d.png'
Found the following significant warnings:
  ./lp_rlp.h:1161:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./lp_rlp.h:1293:49: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./lp_rlp.h:1401:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lp_rlp.c:569:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  yacc_read.c:139:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  yacc_read.c:547:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/QCA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'EWAS_QC_graph_effectsize.png' 'EWAS_QC_graph_precision.png'
  'EWAS_QC_legend.txt' 'sample1.txt.gz' 'sample2.txt.gz'
  'sample_map.txt.gz' 'sample_output.graph_M.png'
  'sample_output.graph_QQ.png' 'sample_output.graph_p.png'
  'sample_output.graph_volcano.png' 'sample_output.histo.png'
  'sample_output.txt' 'sample_output1.graph_M.png'
  'sample_output1.graph_QQ.png' 'sample_output1.graph_p.png'
  'sample_output1.graph_volcano.png' 'sample_output1.histo.png'
  'sample_output2.graph_M.png' 'sample_output2.graph_QQ.png'
  'sample_output2.graph_p.png' 'sample_output2.graph_volcano.png'
  'sample_output2.histo.png' 'translation_table.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) CentAndClusfuns.Rd:70: Escaped LaTeX specials: \&
checkRd: (-1) EBICglasso.Rd:8: Escaped LaTeX specials: \&
checkRd: (-1) pathways.Rd:36: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  ql/time/calendars/argentina.cpp:52:36: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ql/time/calendars/argentina.cpp:52:49: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/qlcal.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:9:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:10:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/qoi.Rcheck/00install.out' for details.
Found the following files/directories:
  'lambda.pdf' 'qqplot.pdf'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Quadtree.cpp:298:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/quadtree.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) GRI.Rd:3: Escaped LaTeX specials: \&
Running examples in 'quantdates-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LastDayOfMonth
> ### Title: LastDayOfMonth
> ### Aliases: LastDayOfMonth
> 
> ### ** Examples
> 
> # Return last day of the month in year
> LastDayOfMonth(year = 2020, month = 2)
Error in .POSIXct(x, tz, ...) : unused argument (format = "%Y-%m-%d")
Calls: LastDayOfMonth -> as.POSIXct -> as.POSIXct.default
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'quantdates.Rmd' using rmarkdown
Quitting from lines 45-48 (quantdates.Rmd) 
Error: processing vignette 'quantdates.Rmd' failed with diagnostics:
unused argument (format = "%Y-%m-%d")
--- failed re-building 'quantdates.Rmd'

SUMMARY: processing the following file failed:
  'quantdates.Rmd'

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Found the following calls to attach():
File 'quantmod/R/attachSymbols.R':
  attach(NULL, pos = pos, name = DB$name)
  attach(NULL, pos = pos, name = DB$name)
See section 'Good practice' in '?attach'.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  glmBias.c:84:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/QuasiSeq.Rcheck/00install.out' for details.
Found the following significant warnings:
  loops.cpp:69:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/queuecomputer.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'fastshp', 'visualTest'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) qwraps2.Rd:73: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ReGenesees'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following calls to attach():
File 'R2OpenBUGS/R/attach.all.R':
  attach(x, name = name)
See section 'Good practice' in '?attach'.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ../inst/include/sundials/sundials_nvector.h:163:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../inst/include/sundials/sundials_nonlinearsolver.h:131:56: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../inst/include/sundials/sundials_matrix.h:105:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../inst/include/sundials/sundials_linearsolver.h:137:50: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lib/sundials/sundials_nonlinearsolver.c:26:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lib/sundials/sundials_matrix.c:29:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lib/sundials/sundials_nvector.c:28:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  lib/sundials/sundials_linearsolver.c:28:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/r2sundials.Rcheck/00install.out' for details.
Found the following calls to attach():
File 'R2WinBUGS/R/attach.all.R':
  attach(x, name = name)
See section 'Good practice' in '?attach'.
Package suggested but not available for checking: 'BayesianTools'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: 'harmony'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fdepth.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) fdepth.Rd:45: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'blcs.dot' 'ex1.dot' 'ex1bridge1.dot' 'ex1bridge2.dot'
  'ex1bridge3.dot' 'ex1effect1.dot' 'ex1effect2.dot' 'gcmlinear.dot'
  'latent.dot' 'lcs.dot' 'mimic.dot'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'RandomFields'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Bug Fixes
    New Features
    Major Changes
    Minor changes
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ri'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Package suggested but not available for checking: 'googlesheets'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  RankCluster.cpp:601:17: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  test.cpp:34:17: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rankcluster.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./gsl_randist.h:73:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  discrete.c:539:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ranlip.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./Rstrptime.h:1199:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RApiDatetime.Rcheck/00install.out' for details.
Running 'test.R' [0s/1s]
  Running 'version.R' [0s/1s]
Running the tests in 'tests/test.R' failed.
Complete output:
  > #!/usr/bin/Rscript
  > 
  > Sys.setenv(TZ="America/Chicago")
  > options(digits.secs=6)
  > library(RApiDatetime)
  > 
  > x <- format(as.POSIXct(Sys.time() + 0:1, origin="1970-01-01"))
  Error in .POSIXct(x, tz, ...) : unused argument (origin = "1970-01-01")
  Calls: format -> as.POSIXct -> as.POSIXct.default
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  sketch.c:33:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sketch.c:38:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sketch.c:172:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sketch.c:206:6: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RaProR.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  geodesic.c:50:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/raster.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'cairoDevice', 'RGtk2'
checkRd: (-1) acquireAuditData.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) rattle.Rd:44: Escaped LaTeX specials: \_
Found the following significant warnings:
  rbm_haplos_thresholds_filling.cpp:14:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  rbm_haplos_thresholds_filling.cpp:14:27: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  rbm_haplos_thresholds_filling.cpp:49:34: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Ravages.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'rbch-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: intMaxDay
> ### Title: Integer representation of a day-end
> ### Aliases: intMaxDay
> 
> ### ** Examples
> 
> d1 <- "2017-03-15"
> d1 <- intMaxDay(d1)
Error in .POSIXct(x, tz, ...) : unused argument (origin = "1970-01-01")
Calls: intMaxDay -> date2int -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./charsets.h:22:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bib2be.c:29:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bibtexdirectin.c:93:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  charsets.c:34614:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rbibutils.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) mn4joint1condi.Rd:39: Escaped LaTeX specials: \$
checkRd: (-1) mn4joint1condi.Rd:40: Escaped LaTeX specials: \$
checkRd: (-1) objets.Rd:66: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./crit.h:27:14: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rborist.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Running examples in 'rbtc-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: intMaxDay
> ### Title: Integer representation of a day-end
> ### Aliases: intMaxDay
> 
> ### ** Examples
> 
> d1 <- "2017-03-15"
> d1 <- intMaxDay(d1)
Error in .POSIXct(x, tz, ...) : unused argument (origin = "1970-01-01")
Calls: intMaxDay -> date2int -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'rcanvec.cache'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rrelaxiv'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'rrelaxiv'
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'temp.RData'
Found the following significant warnings:
  cddmp.c:23:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cddmp.c:63:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cddmp_f.c:24:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cddmp_f.c:64:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  nonred.c:99:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rcdd.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'data.csv'
Found the following significant warnings:
  RClickhouse_init.c:23:54: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  vendor/clickhouse-cpp/contrib/lz4/lz4.c:373:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  vendor/clickhouse-cpp/contrib/lz4/lz4.c:1474:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RClickhouse.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'outcmaesdisp.dat'
Depends: includes the non-default packages:
  'biclust', 'fabia', 'iBBiG', 'superbiclust', 'BcDiag', 'BicARE',
  's4vd', 'BiBitR'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
'LazyData' is specified without a 'data' directory
checkRd: (-1) RcmdrPlugin.MA-package.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) RcmdrPlugin.MA-package.Rd:23: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'ROpenOffice'
Depends: includes the non-default packages:
  'IQCC', 'qcc', 'qicharts2', 'randtests', 'rmarkdown',
  'TeachingDemos', 'tseries'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'conics'
Found the following significant warnings:
  myDerivs4.cc:45:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  myParms4.cc:79:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RCPmod.Rcheck/00install.out' for details.
Found the following significant warnings:
  init.c:11:43: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:12:45: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:13:45: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:14:43: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:15:46: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:16:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RcppAnnoy.Rcheck/00install.out' for details.
Found the following significant warnings:
  init.c:15:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:16:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:17:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:18:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:19:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RcppBDT.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:11:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RcppEigen.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:12:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:13:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RcppGSL.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  ql/time/calendars/argentina.cpp:52:36: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ql/time/calendars/argentina.cpp:52:49: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RcppQuantuccia.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'rredis'
Found the following significant warnings:
  init.c:11:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RcppRedis.Rcheck/00install.out' for details.
Found the following significant warnings:
  ../inst/include/RcppSimdJson/../simdjson.h:8817:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  ../inst/include/simdjson.h:8817:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RcppSimdJson.Rcheck/00install.out' for details.
Found the following significant warnings:
  init.c:11:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RcppXts.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  decline_interface.cpp:34:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rdca.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rDEA_init.c:11:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rDEA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  dsdp/include/dsdp5.h:206:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../../include/dsdp5.h:206:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dsdpcops.c:20:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dsdpcops.c:28:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dsdpsetoptions.c:280:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sdpalloc.c:4:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sdpexit.c:4:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dsdperror.c:129:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rdsdp.Rcheck/00install.out' for details.
Found the following significant warnings:
  Source.cpp:389:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RDSsamplesize.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) re2_syntax.Rd:539: Escaped LaTeX specials: \_
Package suggested but not available for checking: 'dataui'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'temp.txt' 'temp2.csv' 'temp3.rda'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'readwritesqlite-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rws_describe_meta.character
> ### Title: Add Descriptions to SQL Meta Data Table
> ### Aliases: rws_describe_meta.character
> 
> ### ** Examples
> 
> conn <- rws_connect()
> rws_write(rws_data, exists = FALSE, conn = conn)
Warning in as.character.POSIXt(date_time, format = "%Y-%m-%d %H:%M:%S") :
  as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?
Error: CHECK constraint failed: DATETIME(DateTimeUTCLog) IS DateTimeUTCLog AND
    CommandLog IN ('CREATE', 'UPDATE', 'DELETE', 'INSERT', 'DROP') AND
    NRowLog >= 0
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'using-readwritesqlite.Rmd' using rmarkdown
Quitting from lines 36-38 (using-readwritesqlite.Rmd) 
Error: processing vignette 'using-readwritesqlite.Rmd' failed with diagnostics:
CHECK constraint failed: DATETIME(DateTimeUTCLog) IS DateTimeUTCLog AND
    CommandLog IN ('CREATE', 'UPDATE', 'DELETE', 'INSERT', 'DROP') AND
    NRowLog >= 0
--- failed re-building 'using-readwritesqlite.Rmd'

SUMMARY: processing the following file failed:
  'using-readwritesqlite.Rmd'

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  libxls/endian.c:38:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libxls/locale.c:50:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/readxl.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ecocrop.cpp:95:8: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Recocrop.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  mygllm.c:11:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:43:7: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:52:25: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:55:24: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:72:62: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:101:20: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:108:30: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:108:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:115:28: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:115:34: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:161:30: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  mygllm.c:161:36: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RecordLinkage.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
Found the following files/directories:
  'Filled.RData' 'cleaned.RData' 'days' 'gridded'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  redland.c:771:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  redland.c:817:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  redland.c:1846:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/redland.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [11s/14s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(refund.shiny)
  > 
  > test_check("refund.shiny")
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 5 ]
  
  == Skipped tests ===============================================================
  * empty test (1)
  
  == Failed tests ================================================================
  -- Error (test-registration.R:22:3): no errors arise for gaussian registration plots --
  Error in `register_fpca(Y = registration_data, family = "gaussian")`: Please either specify 'npc' or 'npc_criterion' appropriately.
  Backtrace:
      x
   1. \-registr::register_fpca(Y = registration_data, family = "gaussian") at test-registration.R:22:2
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 5 ]
  Error: Test failures
  Execution halted
Found the following files/directories:
  'EnvironmentalA.txt' 'EnvironmentalB.txt' 'Example.txt'
  'Example_Predictions.txt' 'Example_RRDist.txt'
  'Example_RRDistCol.TIF' 'Example_RRDistGrey.TIF' 'GeneticA.txt'
  'GeneticB.txt' 'Inds.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:9:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:13:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/reglogit.Rcheck/00install.out' for details.
checkRd: (-1) pima.Rd:24: Escaped LaTeX specials: \^
checkRd: (-1) reglogit.Rd:120: Escaped LaTeX specials: \&
checkRd: (-1) reglogit.Rd:124: Escaped LaTeX specials: \&
checkRd: (-1) reglogit.Rd:136: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) calc.relimp.Rd:41: Escaped LaTeX specials: \~
checkRd: (-1) classesmethods.relaimpo.Rd:27: Escaped LaTeX specials: \$
checkRd: (-1) classesmethods.relaimpo.Rd:104: Escaped LaTeX specials: \$
checkRd: (-1) mianalyze.relimp.Rd:69: Escaped LaTeX specials: \~
checkRd: (-1) mianalyze.relimp.Rd:73: Escaped LaTeX specials: \~
checkRd: (-1) relimplm-class.Rd:63: Escaped LaTeX specials: \$
checkRd: (-1) relimplmbootMI-class.Rd:121: Escaped LaTeX specials: \$
checkRd: (-1) relimplmbooteval-class.Rd:146: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'pbdRPC'
checkRd: (-1) ena.plot.group.Rd:44: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.group.Rd:46: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.group.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.trajectory.Rd:38: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.trajectory.Rd:40: Escaped LaTeX specials: \$
checkRd: (-1) ena.plot.trajectory.Rd:42: Escaped LaTeX specials: \$
Problems with news in 'NEWS.md':
No news entries found.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  dist.c:246:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dist.c:278:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/repeated.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'PackageCites.bib'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [20m/23m]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(reportr)
  > 
  > test_check("reportr")
  Killed
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  within_category_compare.cpp:52:21: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/representr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) KitchenhamEtAl.CorrelationsAmongParticipants.Madeyski10.Rd:7: Escaped LaTeX specials: \&
checkRd: (-1) KitchenhamEtAl.CorrelationsAmongParticipants.Madeyski10.Rd:56: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Running 'testthat.R' [3s/3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(reqres)
  > 
  > test_check("reqres")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 98 ]
  
  == Failed tests ================================================================
  -- Error (test-response.R:78:3): cookies can be get, set, and removed ----------
  Error in `.POSIXct(unclass(x) * 86400, tz = tz, ...)`: unused argument (format = NULL)
  Backtrace:
      x
   1. \-res$set_cookie(...) at test-response.R:78:2
   2.   \-reqres:::cookie(...)
   3.     +-base::paste0("Expires=", to_http_date(expires))
   4.     \-reqres::to_http_date(expires)
   5.       +-base::as.POSIXct(time, format = format)
   6.       \-base::as.POSIXct.Date(time, format = format)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 98 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'P.csv' 'correct_alpha.csv' 'correct_beta.csv' 'correct_gamma.csv'
  'correct_lambda.csv' 'correct_perm_list.csv' 'correct_psi.csv'
'LazyData' is specified without a 'data' directory
checkRd: (-1) cast.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) cast.Rd:46: Escaped LaTeX specials: \_
checkRd: (-1) as-data-frame-cast-df-v7.rd:3: Escaped LaTeX specials: \_
checkRd: (-1) as-data-frame-cast-matrix-59.rd:3: Escaped LaTeX specials: \_
checkRd: (-1) as-matrix-cast-df-bu.rd:3: Escaped LaTeX specials: \_
checkRd: (-1) as-matrix-cast-matrix-2y.rd:3: Escaped LaTeX specials: \_
checkRd: (-1) cast-9g.rd:19: Escaped LaTeX specials: \_ \_
checkRd: (-1) cast-9g.rd:41: Escaped LaTeX specials: \_
checkRd: (-1) cast-9g.rd:46: Escaped LaTeX specials: \_ \_
checkRd: (-1) clean-vars-rc.rd:13: Escaped LaTeX specials: \_
checkRd: (-1) expand-kx.rd:15: Escaped LaTeX specials: \_
checkRd: (-1) reshape-4u.rd:17: Escaped LaTeX specials: \_ \_
'LazyData' is specified without a 'data' directory
checkRd: (-1) Burns.Rd:28: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'evdbayes'
Found the following significant warnings:
  init.c:120:52: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/revdbayes.Rcheck/00install.out' for details.
checkRd: (-1) rec.Rd:23: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'RevGadgets'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) boot.james.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) boot.student2.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) coljack.means.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) collognorm.mle.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) collognorm.mle.Rd:71: Escaped LaTeX specials: \&
checkRd: (-1) fipois.reg.Rd:66: Escaped LaTeX specials: \&
checkRd: (-1) halfcauchy.mle.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) halfcauchy.mle.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) jack.mean.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) lm.parboot.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) multivm.mle.Rd:62: Escaped LaTeX specials: \&
checkRd: (-1) ancova1.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) ancovas.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) boot.ttest2.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) colnormal.mle.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) colnormal.mle.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) colnormal.mle.Rd:77: Escaped LaTeX specials: \&
checkRd: (-1) colrint.regbx.Rd:58: Escaped LaTeX specials: \&
checkRd: (-1) colvarcomps.mom.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) colvarcomps.mom.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) ftest.Rd:90: Escaped LaTeX specials: \&
checkRd: (-1) ftests.Rd:68: Escaped LaTeX specials: \&
checkRd: (-1) gammamle.Rd:81: Escaped LaTeX specials: \&
checkRd: (-1) gammamle.Rd:83: Escaped LaTeX specials: \&
checkRd: (-1) gammamle.Rd:88: Escaped LaTeX specials: \&
checkRd: (-1) rint.regbx.Rd:65: Escaped LaTeX specials: \&
checkRd: (-1) rint.regs.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) twoway.anovas.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) varcomps.mom.Rd:66: Escaped LaTeX specials: \&
checkRd: (-1) varcomps.mom.Rd:70: Escaped LaTeX specials: \&
checkRd: (-1) vm.mle.Rd:60: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) CardioRiskFactors.Rd:35: Escaped LaTeX specials: \&
Found the following significant warnings:
  ./fmrandom.h:56:17: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  lp_matrix.c:2913:59: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  yacc_read.c:147:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  yacc_read.c:555:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rfmtool.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  pcg_basic.c:69:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RGBM.Rcheck/00install.out' for details.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sp/include/sp.h:95:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rgdal.h:28:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rgdal.h:29:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rgdal.h:130:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rgdal.h:134:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rgdal.h:135:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rgdal.h:136:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rgdal.h:138:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rgdal.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./IP2Loc_DBInterface.h:51:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./IP2Loc_DBInterface.h:55:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./IP2Location.h:186:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  IP2Loc_DBInterface.c:242:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  IP2Location.c:208:49: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  IP2Location.c:275:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  IP2Location.c:841:49: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rgeolocate.Rcheck/00install.out' for details.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sp/include/sp.h:95:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rgeos.Rcheck/00install.out' for details.
Found the following significant warnings:
  Rglpk_read_file.c:17:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:42:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rglpk.Rcheck/00install.out' for details.
checkRd: (-1) Rglpk_read_file.Rd:6: Escaped LaTeX specials: \_
Found the following significant warnings:
  ./gl2ps.h:254:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gl2ps.c:6479:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rgl.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) columbus.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) columbus.Rd:25: Escaped LaTeX specials: \_
checkRd: (-1) columbus.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) columbus.Rd:30: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./qoma-hli.h:23:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./qoma-hli.h:24:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./qoma-hli.h:25:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./qoma-hli.h:26:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  qoma-hli.c:29:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  qoma-hli.c:39:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  qoma-hli.c:58:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  qoma-hli.c:131:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rhli.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'mydata.rda' 'thedata.rda'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  filterhr.c:7:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RHRV.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'mimic.demo', 'eicu.demo'
checkRd: (-1) acg.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) gorilla.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) grassmann.utest.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) macg.Rd:71: Escaped LaTeX specials: \&
checkRd: (-1) sphere.utest.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) stiefel.utest.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) wrap.landmark.Rd:41: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./convert.h:12:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  convert.c:79:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ring.Rcheck/00install.out' for details.
File 'RInside/libs/RInside.so':
  Found 'srand', possibly from 'srand' (C)
    Object: 'RInside.o'
File 'RInside/libs/RInside.so':
  Found non-API calls to R: 'R_CStackLimit', 'R_CleanTempDir',
    'R_DefParams', 'R_ReplDLLdo1', 'R_ReplDLLinit',
    'R_RunExitFinalizers', 'R_SetParams', 'R_SignalHandlers',
    'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /tmp/RtmpcY2N5U/R.INSTALL19b9221b462a9e/riot/src/vtk-src/ThirdParty/lz4/vtklz4/lib/lz4.c:608:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /tmp/RtmpcY2N5U/R.INSTALL19b9221b462a9e/riot/src/vtk-src/ThirdParty/lz4/vtklz4/lib/lz4.c:2377:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /tmp/RtmpcY2N5U/R.INSTALL19b9221b462a9e/riot/src/vtk-src/ThirdParty/zlib/vtkzlib/crc32.c:188:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /tmp/RtmpcY2N5U/R.INSTALL19b9221b462a9e/riot/src/vtk-src/ThirdParty/zlib/vtkzlib/trees.c:232:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /tmp/RtmpcY2N5U/R.INSTALL19b9221b462a9e/riot/src/vtk-src/ThirdParty/zlib/vtkzlib/zutil.c:27:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /tmp/RtmpcY2N5U/R.INSTALL19b9221b462a9e/riot/src/vtk-src/ThirdParty/zlib/vtkzlib/zutil.c:32:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/riot.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'B110711CD4.CSV' 'inputparam2.txt' 'itcout0.pdf' 'itcout1.eps'
  'origin_data.csv'
'LazyData' is specified without a 'data' directory
Running examples in 'RiverLoad-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CQregression
> ### Title: Relationship between concentration and flow
> ### Aliases: CQregression
> ### Keywords: regression
> 
> ### ** Examples
> 
> data("flow.data1","conc.data1")
> union<-db.union(flow.data1, conc.data1)
Error in .POSIXct(x, tz, ...) : 
  unused argument (format = "%Y-%m-%d %H:%M:%S")
Calls: db.union -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./init.h:19:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./init.h:26:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./init.h:30:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rjags.Rcheck/00install.out' for details.
Non-standard file/directory found at top level:
  'jri'
Found the following possibly unsafe calls:
File 'rJava/R/import.R':
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File 'rJava/R/jinit.R':
  unlockBinding(x, .env)
  unlockBinding(x, pe)
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  jri/src/Makefile.win
  jri/src/win32/Makefile
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Note: information on .o files is not available
File '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so':
  Found '_exit', possibly from '_exit' (C)
  Found 'stderr', possibly from 'stderr' (C)
  Found 'stdout', possibly from 'stdout' (C)
File 'rJava/libs/rJava.so':
  Found non-API calls to R: 'R_CStackLimit', 'R_CStackStart'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rlibjson.c:364:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RJSONIO.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) Exponential.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) Gamma.Rd:80: Escaped LaTeX specials: \&
checkRd: (-1) college.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) college.Rd:15: Escaped LaTeX specials: \$
Found the following significant warnings:
  LASlib/lasreader_txt.cpp:279:65: warning: if statement has empty body [-Wempty-body]
  LASlib/lasreader_txt.cpp:643:65: warning: if statement has empty body [-Wempty-body]
  LASlib/lasreader_txt.cpp:1098:65: warning: if statement has empty body [-Wempty-body]
  LASlib/lasreader_txt.cpp:1267:63: warning: if statement has empty body [-Wempty-body]
  LASlib/lasreader_asc.cpp:518:38: warning: if statement has empty body [-Wempty-body]
  LASlib/lasreader_ply.cpp:1529:30: warning: if statement has empty body [-Wempty-body]
  LASlib/lasreader_ply.cpp:1548:32: warning: if statement has empty body [-Wempty-body]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rlas.Rcheck/00install.out' for details.
Found the following significant warnings:
  RemoteSensing.cpp:79:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  RemoteSensing.cpp:82:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rlda.Rcheck/00install.out' for details.
Found the following significant warnings:
  RngWrap.c:12:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  RngWrap.c:23:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  RngWrap.c:304:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  RngWrap.c:328:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  zzz.c:11:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  zzz.c:13:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  zzz.c:17:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rlecuyer.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Previous version rmangal
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) cGARCHfilter-class.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) cGARCHfit-class.Rd:59: Escaped LaTeX specials: \&
checkRd: (-1) cGARCHsim-class.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) cGARCHspec-class.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) cgarchsim-methods.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) goGARCHfilter-class.Rd:155: Escaped LaTeX specials: \&
checkRd: (-1) goGARCHfit-class.Rd:166: Escaped LaTeX specials: \&
checkRd: (-1) rmgarch-package.Rd:73: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ClusteringInputHandling.cpp:61:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  ClusteringInputHandling.cpp:72:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rmixmod.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'blockcluster'
Found the following significant warnings:
  lib/Composer/MixtureComposer.h:247:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optim/include/cppoptlib/solver/../linesearch/morethuente.h:175:20: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RMixtCompIO.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'blockcluster'
Package suggested but not available for checking: 'blockcluster'
Found the following calls to attach():
File 'Rmosek/R/builder.R':
  attach(builderenv, pos, name, warn.conflicts)
See section 'Good practice' in '?attach'.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
GNU make is a SystemRequirements.
Found the following significant warnings:
  dist.c:246:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dist.c:278:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:188:49: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:189:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:190:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:191:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:192:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:192:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:193:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:194:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:195:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:196:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:197:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./f2c.h:198:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rmutil.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Major changes
checkRd: (-1) wr.Rd:2: Escaped LaTeX specials: \&
Found the following significant warnings:
  ./RS-MySQL.h:104:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./RS-MySQL.h:106:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  driver.c:4:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  driver.c:9:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  driver.c:59:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  driver.c:78:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  utils.c:261:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RMySQL.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'rnaturalearthhires'
Malformed Title field: should not end in a period.
checkRd: (-1) NlistServersInCategory.Rd:11: Escaped LaTeX specials: \_
Found the following significant warnings:
  ./RNetCDF.h:149:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  udunits.c:385:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RNetCDF.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) addLR.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) addLRinv.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) adtestWrapper.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) arcticLake.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) cenLR.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) cenLRinv.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) expenditures.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) gemas.Rd:68: Escaped LaTeX specials: \&
checkRd: (-1) machineOperators.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) plot.imp.Rd:138: Escaped LaTeX specials: \&
checkRd: (-1) robCompositions-package.Rd:88: Escaped LaTeX specials: \&
checkRd: (-1) skyeLavas.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) variation.Rd:45: Escaped LaTeX specials: \&
Unknown package 'StatDA' in Rd xrefs
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./RMquick.h:32:5: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./RMquick.h:42:29: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./RMquick.h:52:26: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./RMquick.h:53:20: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./RMquick.h:130:61: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./RMquick.h:188:32: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Line.h:15:51: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Line.h:15:61: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Edge.h:105:51: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./segment_tree.h:176:25: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./segment_tree.h:177:54: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./segment_tree.h:179:32: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./segment_tree.h:180:36: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./segment_tree.h:181:36: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/robfilter.Rcheck/00install.out' for details.
checkRd: (-1) hybrid.filter.Rd:159: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  monitor.c:15:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/robustbase.Rcheck/00install.out' for details.
checkRd: (-1) aircraft.Rd:8: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) performance.Rd:35: Escaped LaTeX specials: \#
checkRd: (-1) performance.Rd:36: Escaped LaTeX specials: \# \# \#
checkRd: (-1) performance.Rd:37: Escaped LaTeX specials: \# \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  graph_geodesic.c:9:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rnr/common.h:84:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rnr/common.h:85:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rnr/BitVector.h:57:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rnr/BitVector.h:58:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rnr/BitVector.c:36:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rnr/BitVector.c:46:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rnr/common.c:33:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rnr/common.c:110:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rnr/common.c:133:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rogue.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  /tmp/Rtmp6MA1sg/R.INSTALL95a6153240262/rolog/src/swipl-devel/src/os/pl-os.c:2159:26: warning: the comparison will always evaluate as 'true' for the address of 'S__iob' will never be NULL [-Waddress]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rolog.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  vMF.cpp:35:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rotasym.Rcheck/00install.out' for details.
Running 'testthat.R' [14s/18s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rotor)
  > 
  > test_check("rotor")
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 586 ]
  
  == Failed tests ================================================================
  -- Failure (test_BackupQueue.R:712:3): BackupQueueDatetime works with supported timestamp formats --
  as.character(bq$files$timestamp) not identical to `eres`.
  1/7 mismatches
  x[6]: "2019-02-20"
  y[6]: "2019-02-20 00:00:00"
  -- Failure (test_BackupQueue.R:721:3): BackupQueueDatetime works with supported timestamp formats --
  as.character(bq$files$timestamp) not identical to `eres`.
  1/7 mismatches
  x[6]: "2019-02-20"
  y[6]: "2019-02-20 00:00:00"
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 586 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'RandomFields'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./rpart.h:78:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rpart.h:79:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rpart.h:80:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./rpart.h:81:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  gini.c:15:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./func_table.h:50:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./func_table.h:51:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./func_table.h:52:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./func_table.h:53:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rpart.Rcheck/00install.out' for details.
checkRd: (-1) post.rpart.Rd:45: Escaped LaTeX specials: \# \#
checkRd: (-1) post.rpart.Rd:46: Escaped LaTeX specials: \#
checkRd: (-1) text.rpart.Rd:52: Escaped LaTeX specials: \# \#
checkRd: (-1) text.rpart.Rd:53: Escaped LaTeX specials: \#
GNU make is a SystemRequirements.
Found the following files/directories:
  'Rpdb.pdb'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    IMPROVEMENTS AND ### BUG FIXES
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./Rpoppler.h:25:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Rpoppler.c:24:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Rpoppler.c:32:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Rpoppler.c:44:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rpoppler.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:109:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:153:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RProtoBuf.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Installation failed.
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RQuantLib.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'HL_H0.pdf' 'pi0infer.pdf' 'rate.txt' 'summary.txt'
Found the following significant warnings:
  rrcov_init.c:2:29: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  rrcov_init.c:2:48: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  rrcov_init.c:2:51: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  rrcov_init.c:2:71: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rrcov.Rcheck/00install.out' for details.
Found the following significant warnings:
  Rrdrand.c:107:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rrdrand.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'test.bpl' 'test.cr' 'test.ct'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gdalUtils'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./Stopwatch.h:13:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Stopwatch.c:4:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rscimark.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  cli.c:172:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cli.c:211:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cli.c:1152:19: warning: 'RSA_size' is deprecated [-Wdeprecated-declarations]
  cli.c:1152:42: warning: 'RSA_size' is deprecated [-Wdeprecated-declarations]
  cli.c:1153:11: warning: 'RSA_public_encrypt' is deprecated [-Wdeprecated-declarations]
  cli.c:1194:11: warning: 'd2i_RSAPublicKey' is deprecated [-Wdeprecated-declarations]
  dummy.c:5:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dummy.c:6:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  dummy.c:8:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RSclient.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) DOsgram.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) MTM.drive.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) MTMdisp.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) MTMgabor.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) doGABOR.AR.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) doGABOR.MTM.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) evolMTM.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) get.slepians.Rd:24: Escaped LaTeX specials: \&
checkRd: (-1) mtapspec.Rd:45: Escaped LaTeX specials: \&
checkRd: (-1) plt.MTM0.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) save.wpix.Rd:15: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Note: information on .o files is not available
File '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rserve/libs/Rserve.so':
  Found 'exit', possibly from 'exit' (C)
  Found 'rand', possibly from 'rand' (C)
  Found 'random', possibly from 'random' (C)
  Found 'srandom', possibly from 'srandom' (C)
  Found 'stderr', possibly from 'stderr' (C)
File 'Rserve/libs/Rserve.so':
  Found non-API calls to R: 'R_Consolefile', 'R_InputHandlers',
    'R_Outputfile', 'R_TempDir', 'R_Visible', 'addInputHandler',
    'ptr_R_Busy', 'ptr_R_ClearerrConsole', 'ptr_R_FlushConsole',
    'ptr_R_ReadConsole', 'ptr_R_ResetConsole', 'ptr_R_ShowMessage',
    'ptr_R_WriteConsole', 'ptr_R_WriteConsoleEx'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  model/ml/MLSimulation.cpp:1073:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  model/ml/MLSimulation.cpp:1588:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  model/variables/DependentVariable.cpp:1780:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  model/effects/EffectFactory.cpp:1414:11: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  model/effects/DiffusionRateEffect.cpp:57:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  model/effects/DiffusionRateEffect.cpp:126:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  model/StatisticCalculator.cpp:1665:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  model/effects/SettingSizeEffect.cpp:48:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RSiena.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'Vdgraph'
Unknown package 'Vdgraph' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  miniz.c:2200:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  miniz.c:2941:45: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RstoxData.Rcheck/00install.out' for details.
Found the following significant warnings:
  R_RNG.c:32:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rstream.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rsvg.c:241:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rsvg.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./rsyslog.h:15:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rsyslog.c:50:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rsyslog.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'test_addPageBreak.doc' 'test_addPlot.doc' 'test_addSessionInfo.doc'
  'test_addTable.doc'
GNU make is a SystemRequirements.
Found the following significant warnings:
  ../inst/projects/Algebra/include/STK_ILeastSquare.h:97:39: warning: returning reference to local temporary object [-Wreturn-stack-address]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rtkore.Rcheck/00install.out' for details.
Found the following significant warnings:
  line_AABB_rcpp.cpp:59:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  line_AABB_rcpp.cpp:60:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  line_AABB_rcpp.cpp:61:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  line_AABB_rcpp.cpp:70:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  line_AABB_rcpp.cpp:71:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  line_AABB_rcpp.cpp:72:10: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rTLS.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./triangle.h:287:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./triangle.h:288:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  triangle.c:3284:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  triangle.c:4903:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  triangle.c:13231:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RTriangle.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
Running 'testthat.R' [3s/5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rtry)
  > 
  > test_check("rtry")
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 92 ]
  
  == Failed tests ================================================================
  -- Error (test-geocoding.R:10:3): basic test -----------------------------------
  Error in `rtry_geocoding(input_address, "john.doe@example.com")`: object 'geocode' not found
  Backtrace:
      x
   1. \-rtry::rtry_geocoding(input_address, "john.doe@example.com") at test-geocoding.R:10:2
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 92 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: 'cmdstanr'
Unknown package 'cmdstanr' in Rd xrefs
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'RQuantLib'
Problems with news in 'NEWS.md':
No news entries found.
Found the following files/directories:
  'Tsttwalk.dat'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) sp500ret.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) spyreal.Rd:6: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) tracker.Rd:70: Escaped LaTeX specials: \&
checkRd: (-1) tracker.Rd:73: Escaped LaTeX specials: \&
Found the following files/directories:
  'results'
checkRd: (-1) run.jags.study.Rd:67: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  unuran-src/methods/pinv.c:78:48: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Runuran.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:60:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rust.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'glmmADMB'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'gpuR'
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  haversine_dbox.cpp:45:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  haversine_dbox.cpp:50:14: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  haversine_dbox.cpp:113:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  haversine_dbox.cpp:118:14: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Rvoterdistance.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) DOG.Rd:32: Escaped LaTeX specials: \_ \_
checkRd: (-1) DOG.Rd:33: Escaped LaTeX specials: \_
checkRd: (-1) DOG.Rd:48: Escaped LaTeX specials: \_ \_
checkRd: (-1) DOG.Rd:51: Escaped LaTeX specials: \_
checkRd: (-1) cgt.Rd:36: Escaped LaTeX specials: \_ \_
checkRd: (-1) cwt.Rd:29: Escaped LaTeX specials: \_ \_
checkRd: (-1) cwt.Rd:30: Escaped LaTeX specials: \_
checkRd: (-1) cwt.Rd:43: Escaped LaTeX specials: \_ \_
checkRd: (-1) cwt.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) cwtimage.Rd:25: Escaped LaTeX specials: \_ \_
checkRd: (-1) cwtimage.Rd:27: Escaped LaTeX specials: \_
checkRd: (-1) cwtpolar.Rd:38: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mapBubbles.Rd:62: Escaped LaTeX specials: \$
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  nchg.c:251:63: warning: if statement has empty body [-Wempty-body]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RxCEcolInf.Rcheck/00install.out' for details.
checkRd: (-1) Analyze.Rd:344: Escaped LaTeX specials: \&
checkRd: (-1) Analyze.Rd:337: Escaped LaTeX specials: \&
checkRd: (-1) AnalyzeWithExitPoll.Rd:285: Escaped LaTeX specials: \&
checkRd: (-1) AnalyzeWithExitPoll.Rd:278: Escaped LaTeX specials: \&
checkRd: (-1) RxCEcolInf-package.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) RxCEcolInf-package.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) Tune.Rd:206: Escaped LaTeX specials: \&
checkRd: (-1) Tune.Rd:203: Escaped LaTeX specials: \&
checkRd: (-1) TuneWithExitPoll.Rd:223: Escaped LaTeX specials: \&
checkRd: (-1) TuneWithExitPoll.Rd:220: Escaped LaTeX specials: \&
checkRd: (-1) gendata.ep.Rd:123: Escaped LaTeX specials: \&
checkRd: (-1) gendata.ep.Rd:289: Escaped LaTeX specials: \&
checkRd: (-1) gendata.ep.Rd:286: Escaped LaTeX specials: \&
checkRd: (-1) add.dosing.Rd:147: Escaped LaTeX specials: \&
checkRd: (-1) add.sampling.Rd:113: Escaped LaTeX specials: \&
checkRd: (-1) et.Rd:243: Escaped LaTeX specials: \&
checkRd: (-1) etRbind.Rd:146: Escaped LaTeX specials: \&
checkRd: (-1) etRep.Rd:164: Escaped LaTeX specials: \&
checkRd: (-1) etSeq.Rd:143: Escaped LaTeX specials: \&
checkRd: (-1) add.dosing.Rd:147: Escaped LaTeX specials: \&
checkRd: (-1) add.sampling.Rd:113: Escaped LaTeX specials: \&
checkRd: (-1) et.Rd:243: Escaped LaTeX specials: \&
checkRd: (-1) etRbind.Rd:146: Escaped LaTeX specials: \&
checkRd: (-1) etRep.Rd:164: Escaped LaTeX specials: \&
checkRd: (-1) etSeq.Rd:143: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) butterfat.df.Rd:24: Escaped LaTeX specials: \&
checkRd: (-1) butterfat.df.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) fire.df.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) fruitfly.df.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) fruitfly.df.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) house.df.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) house.df.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) incomes.df.Rd:8: Escaped LaTeX specials: \$
checkRd: (-1) skulls.df.Rd:24: Escaped LaTeX specials: \&
checkRd: (-1) skulls.df.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) technitron.df.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) zoo.df.Rd:13: Escaped LaTeX specials: \$
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wk/include/wk-v1.h:101:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wk/include/wk-v1.h:106:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wk/include/wk-v1-impl.c:50:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wk/include/wk-v1-impl.c:148:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/s2.Rcheck/00install.out' for details.
checkRd: (-1) BootsChapt.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) SemiparChangePoint.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) schapt.Rd:44: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./Gen_fun.h:17:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Gen_fun.c:121:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./IFscratch.h:64:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  load_IFscratch.c:64:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  load_env.c:162:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/samon.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./init.h:28:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./init.h:29:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SamplerCompare.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) SAM.Rd:67: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:59: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:84: Escaped LaTeX specials: \# \$
checkRd: (-1) samr.Rd:88: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:92: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) samr.assess.samplesize.plot.Rd:12: Escaped LaTeX specials: \#
Package suggested but not available for checking: 'networkTomography'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'FitARMA'
checkRd: (-1) generef.Rd:29: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Updated help pages with examples
    Updated conjugate model sampler
Malformed Title field: should not end in a period.
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
'LazyData' is specified without a 'data' directory
Packages which this enhances but not available for checking:
  'gurobi', 'pogs'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package required but not available: 'harmony'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
checkRd: (-1) x.oreo.Rd:48: Escaped LaTeX specials: \_ \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./error.h:33:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/scclust.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'SingleCellSignalR'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'ssvd', 'conos'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  metrics.cpp:105:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  metrics.cpp:124:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/scPOP.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) simulateSNPs.Rd:46: Escaped LaTeX specials: \& \& \&
checkRd: (-1) simulateSNPs.Rd:80: Escaped LaTeX specials: \& \& \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'untitled_consensus_cluster'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  linsys/cpu/direct/private.c:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/scs.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'glmGamPoi'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'MC p-value.ps' 'Output.csv' 'Rh.ps' 'Th.ps' 'dataratio .Rdata'
  'featuresRmax.csv' 'featuresT.csv'
Problems with news in 'NEWS.md':
No news entries found.
Running examples in 'SDLfilter-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ddfilter
> ### Title: Filter locations using a data driven filter
> ### Aliases: ddfilter
> 
> ### ** Examples
> 
> #### Load data sets
> ## Fastloc GPS data obtained from a green turtle
> data(turtle)
> 
> ## A Map for the example site
> data(Australia)
> data(SandyStrait)
> 
> 
> #### Filter temporal and/or spatial duplicates
> turtle.dup <- dupfilter(turtle, step.time=5/60, step.dist=0.001)

dupfilter_exact removed 0 of 429 locations
Error in .POSIXct(x, tz, ...) : 
  unused argument (format = "%Y-%m-%d %H:%M:%S")
Calls: dupfilter ... dup.qi -> track_param -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'xbioc', 'MuSiC', 'seAMLessData'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'spgrass6'
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ../inst/include/selectRegGen.hpp:4:47: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SelvarMix.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
checkRd: (-1) escape.Rd:28: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) sobol_indices.Rd:119: Escaped LaTeX specials: \&
checkRd: (-1) fahst.rd:39: Escaped LaTeX specials: \^
checkRd: (-1) fahst.rd:36: Escaped LaTeX specials: \^
checkRd: (-1) fasnt.rd:46: Escaped LaTeX specials: \^
checkRd: (-1) fasnt.rd:42: Escaped LaTeX specials: \^
checkRd: (-1) fasnt.rd:43: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:49: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:44: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:45: Escaped LaTeX specials: \^
checkRd: (-1) fast.Rd:46: Escaped LaTeX specials: \^
checkRd: (-1) hsortplot.rd:24: Escaped LaTeX specials: \^
checkRd: (-1) nappesortplot.Rd:30: Escaped LaTeX specials: \^
checkRd: (-1) nappesortplot.Rd:28: Escaped LaTeX specials: \^
checkRd: (-1) plot.fahst.rd:45: Escaped LaTeX specials: \^
checkRd: (-1) plot.fasnt.Rd:47: Escaped LaTeX specials: \^
checkRd: (-1) plot.fast.Rd:45: Escaped LaTeX specials: \^
checkRd: (-1) print.fahst.rd:22: Escaped LaTeX specials: \^
checkRd: (-1) print.fasnt.Rd:22: Escaped LaTeX specials: \^
checkRd: (-1) print.fast.Rd:22: Escaped LaTeX specials: \^
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  D_optimal.cpp:54:18: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  QIC.cpp:53:18: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  getMH.cpp:53:18: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/seqest.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'assocpointpair_result.csv' 'foundereffectfinder_result.csv'
  'getfreqs_result.csv' 'getfreqs_result.png' 'orPlot.pdf1_1.pdf'
  'orPlot.pdf2_1.pdf' 'orPlot.pdf3_1.pdf' 'orPlot.pdf4_1.pdf'
  'orPlot.pdf5_1.pdf' 'orPlot.pdf6_1.pdf' 'orPlot.pdf7_1.pdf'
  'orPlot.pdf8_1.pdf' 'q-values_result.csv' 'rewritetuple_result.csv'
  'tartan_plot.pdf' 'vispair_plot.pdf' 'vispairfeat_plot.pdf'
  'volcano_plot.pdf'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  util.c:42:20: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  util.c:42:36: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  util.c:42:49: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/seqinr.Rcheck/00install.out' for details.
checkRd: (-1) aaindex.Rd:525: Escaped LaTeX specials: \_
checkRd: (-1) aaindex.Rd:526: Escaped LaTeX specials: \_
checkRd: (-1) acnucopen.Rd:38: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_
checkRd: (-1) acnucopen.Rd:39: Escaped LaTeX specials: \_
checkRd: (-1) read.alignment.Rd:47: Escaped LaTeX specials: \_ \_
checkRd: (-1) read.alignment.Rd:48: Escaped LaTeX specials: \_ \_
Found the following significant warnings:
  ./bcf.h:173:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./bam_endian.h:6:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bcfutils.c:11:1: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bcfutils.c:38:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bedidx.c:23:1: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bgzf.c:107:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix_index.c:19:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix_index.c:48:1: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix_index.c:49:1: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tabix_index.c:789:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/seqminer.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) SEset_to_network.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) network_to_SEset.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) network_to_path.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) path_to_network.Rd:29: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  proj_conf_test.c:5:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sf.Rcheck/00install.out' for details.
checkRd: (-1) TA.plot.Rd:32: Escaped LaTeX specials: \~
checkRd: (-1) diagDA.Rd:51: Escaped LaTeX specials: \#
checkRd: (-1) hatMat.Rd:35: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) gPLS.Rd:72: Escaped LaTeX specials: \^
checkRd: (-1) gPLS.Rd:74: Escaped LaTeX specials: \^
checkRd: (-1) sPLS.Rd:67: Escaped LaTeX specials: \^
checkRd: (-1) sPLS.Rd:69: Escaped LaTeX specials: \^
checkRd: (-1) sgPLS.Rd:75: Escaped LaTeX specials: \^
checkRd: (-1) sgPLS.Rd:77: Escaped LaTeX specials: \^
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Other ideas
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'hydromad'
Package suggested but not available for checking: 'getCRUCLdata'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  '.shiny_run' 'shinyShortcut.desktop'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cmdstanr'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./cairodev.h:86:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cairodev.c:11:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./outline.h:64:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./util.h:44:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./util.h:47:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  outline.c:169:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  register_routines.c:8:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  showtext.c:111:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  util.c:43:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  util.c:53:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/showtext.Rcheck/00install.out' for details.
Found the following significant warnings:
  do_shrinkDSM.cpp:361:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  do_shrinkDSM.cpp:366:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  do_shrinkDSM.cpp:371:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  do_shrinkDSM.cpp:376:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  do_shrinkDSM.cpp:702:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  do_shrinkDSM.cpp:706:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  do_shrinkDSM.cpp:710:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  do_shrinkDSM.cpp:714:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/shrinkDSM.Rcheck/00install.out' for details.
Found the following significant warnings:
  TG_sampling_functions.cpp:50:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  cpp_utilities.cpp:33:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  do_rgig1.cpp:149:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  shrinkTVP.cpp:146:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  shrinkTVP.cpp:151:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  shrinkTVP.cpp:156:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  shrinkTVP.cpp:161:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  shrinkTVP.cpp:620:11: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  shrinkTVP.cpp:624:11: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  shrinkTVP.cpp:628:11: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  shrinkTVP.cpp:632:11: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/shrinkTVP.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'MM.csv' 'Simul.csv' 'catalytic.csv'
Found the following significant warnings:
  optimBlocks.cpp:12:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocks.cpp:15:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocks.cpp:30:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocks.cpp:33:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocks.cpp:36:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocks.cpp:39:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocks.cpp:48:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocks.cpp:51:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocks.cpp:54:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocks.cpp:57:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocksGen.cpp:12:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  optimBlocksGen.cpp:20:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  triadCensus.cpp:53:26: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/signnet.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following files/directories:
  'ExportFigtree1.tre'
checkRd: (-1) chol_s2Dp.Rd:147: Escaped LaTeX specials: \&
checkRd: (-1) chol_s2Dp.Rd:149: Escaped LaTeX specials: \&
checkRd: (-1) precision_builder.Rd:87: Escaped LaTeX specials: \&
checkRd: (-1) sim2D_RandSet_HPPP.Rd:93: Escaped LaTeX specials: \&
checkRd: (-1) sim2D_binarymap.Rd:157: Escaped LaTeX specials: \&
checkRd: (-1) sim_MVN_X.Rd:140: Escaped LaTeX specials: \&
checkRd: (-1) sim_Y_Binary_X.Rd:221: Escaped LaTeX specials: \&
checkRd: (-1) sim_Y_Binary_X.Rd:223: Escaped LaTeX specials: \&
checkRd: (-1) sim_Y_MVN_X.Rd:213: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Warning: unable to re-encode 'Estimate.R' line 276
  Warning: unable to re-encode 'model_DualKc.R' lines 259, 268, 270, 368, 386
  Warning: unable to re-encode 'model_Single_Kc.R' lines 240, 388, 389
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simET.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'database.csv' 'output.csv' 'output_clst.csv'
Found the following significant warnings:
  ./misc/SimInf_openmp.h:31:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:40:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  misc/SimInf_openmp.h:31:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  misc/SimInf_openmp.c:44:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  misc/SimInf_openmp.c:134:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SimInf.Rcheck/00install.out' for details.
Error(s) in re-building vignettes:
  ...
--- re-building 'SimInf.Rnw' using Sweave
Warning in system2(file.path(R.home("bin"), "R"), c("CMD", args), ...) :
  running command ''/home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/R' CMD SHLIB --output='/tmp/RtmpvBc3b5/SimInf_2d742f396960c5.so' '/tmp/RtmpvBc3b5/SimInf_2d742f396960c5.c' 2>&1' had status 1

Error: processing vignette 'SimInf.Rnw' failed with diagnostics:
 chunk 31 (label = SIR-mparse-IV) 
Error : make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SimInf.Rcheck/vign_test/SimInf/vignettes'clang-15 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SimInf/include' -DSIMINF_MODEL_RUN=run_2d742f396960c5 -DSIMINF_R_INIT=R_init_SimInf_2d742f396960c5 -DSIMINF_FORCE_SYMBOLS=FALSE  -I/usr/local/include -D_FORTIFY_SOURCE=2   -fpic  -g -O3 -Wall -pedantic -c /tmp/RtmpvBc3b5/SimInf_2d742f396960c5.c -o /tmp/RtmpvBc3b5/SimInf_2d742f396960c5.o/tmp/RtmpvBc3b5/SimInf_2d742f396960c5.c:107:23: error: too many arguments to function call, expected 0, have 4    return SimInf_run(model, solver, tr_fun, &ptsFun);           ~~~~~~~~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~1 error generated.make[1]: *** [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:176: /tmp/RtmpvBc3b5/SimInf_2d742f396960c5.o] Error 1make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SimInf.Rcheck/vign_test/SimInf/vignettes'

--- failed re-building 'SimInf.Rnw'

--- re-building 'scheduled-events.Rmd' using rmarkdown
--- finished re-building 'scheduled-events.Rmd'

SUMMARY: processing the following file failed:
  'SimInf.Rnw'

Error: Vignette re-building failed.
Execution halted
GNU make is a SystemRequirements.
Found the following files/directories:
  'res_mutation.tsv' 'res_mutationCounts.txt'
  'res_processContribution.txt' 'res_processes.txt'
Found the following files/directories:
  'simu.pheno' 'usedpars.txt'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    simpleCache [0.0.1]
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'surveysd'
Found the following files/directories:
  'SimRAD-exampleRefSeq-Fasta.fa' 'SimRAD-exampleRefSeq.fa'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Version (Date)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'kmndirs'
Unavailable namespace imported from by a ':::' call: 'kmndirs'
  See the note in ?`:::` about the use of this operator.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ex0723.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ex0915.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) ex1515.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) roadwear.Rd:26: Escaped LaTeX specials: \&
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/vctrs/include/vctrs.h:12:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:69:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:72:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  slider-vctrs-private.c:12:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/vctrs/include/vctrs.c:7:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  slider-vctrs-public.c:3:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./summary-core.h:9:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./summary-core.h:10:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/slider.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) slp-package.Rd:38: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
checkRd: (-1) customerRetentionDemographics.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) customerRetentionDemographics.Rd:11: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:12: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:13: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:15: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'SMITIDvisu-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: df2geojson
> ### Title: df2geojson
> ### Aliases: df2geojson
> 
> ### ** Examples
> 
> library(SMITIDvisu)
> data(transmissiontree)
> geojson <- df2geojson(tt.events, multipleValuesByTime = c('infectedby', 'probabilities'))
Error in .POSIXct(unclass(x) * 86400, tz = tz, ...) : 
  unused argument (origin = "1970-01-01")
Calls: df2geojson ... prepareData -> formatTimes -> as.POSIXct -> as.POSIXct.Date
Execution halted
Running 'testthat.R' [2s/3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(SMITIDvisu)
  > test_check("SMITIDvisu")
  [ FAIL 3 | WARN 0 | SKIP 1 | PASS 70 ]
  
  == Skipped tests ===============================================================
  * empty test (1)
  
  == Failed tests ================================================================
  -- Error (test-formatTimes.R:9:2): Date ----------------------------------------
  Error in `.POSIXct(unclass(x) * 86400, tz = tz, ...)`: unused argument (origin = "1970-01-01")
  Backtrace:
      x
   1. \-SMITIDvisu:::formatTimes(timeColumn) at testthat/maptt/test-formatTimes.R:9:8
   2.   +-base::as.POSIXct(times, origin = "1970-01-01", tz = "GMT")
   3.   \-base::as.POSIXct.Date(times, origin = "1970-01-01", tz = "GMT")
  -- Error (test-formatTimes.R:17:2): julian day ---------------------------------
  Error in `.POSIXct(unclass(x) * 86400, tz = tz, ...)`: unused argument (origin = "1970-01-01")
  Backtrace:
      x
   1. \-SMITIDvisu:::formatTimes(timeColumn) at testthat/maptt/test-formatTimes.R:17:8
   2.   +-base::as.POSIXct(times, origin = "1970-01-01", tz = "GMT")
   3.   \-base::as.POSIXct.Date(times, origin = "1970-01-01", tz = "GMT")
  -- Error (test-formatTimes.R:38:2): string julian days -------------------------
  Error in `.POSIXct(unclass(x) * 86400, tz = tz, ...)`: unused argument (origin = "1970-01-01")
  Backtrace:
      x
   1. \-SMITIDvisu:::formatTimes(timeColumn) at testthat/maptt/test-formatTimes.R:38:8
   2.   +-base::as.POSIXct(times, origin = "1970-01-01", tz = "GMT")
   3.   \-base::as.POSIXct.Date(times, origin = "1970-01-01", tz = "GMT")
  
  [ FAIL 3 | WARN 0 | SKIP 1 | PASS 70 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'rPython'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) hoods2dsmooth.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) kernel2dmeitsjer.Rd:75: Escaped LaTeX specials: \&
checkRd: (-1) kernel2dsmooth.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) smoothie-package.Rd:42: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./Scythe_Error.h:159:12: warning: returning address of local temporary object [-Wreturn-stack-address]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/smoothSurv.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Found the following files/directories:
  'my_new_social_media_plot.png'
Unknown package 'andrews' in Rd xrefs
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  SnowballC_init.c:7:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  stem.c:59:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SnowballC.Rcheck/00install.out' for details.
Found the following calls to attach():
File 'SOAR/R/SOAR.R':
  attach(NULL, pos, basename(directory))
See section 'Good practice' in '?attach'.
Found the following files/directories:
  '.R_Test'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  SoDA_init.c:5:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  digest_C.c:180:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SoDA.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) llwrPTF.Rd:7: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot.som.Rd:27: Escaped LaTeX specials: \_
checkRd: (-1) som.Rd:128: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  sorcering.cpp:247:29: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  sorcering.cpp:251:34: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  sorcering.cpp:255:34: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sorcering.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'SciencesPo'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'r2cytoscape'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  lacov.cpp:56:13: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  lacov.cpp:89:13: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  lacov.cpp:126:13: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  stkmat.cpp:27:13: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  stkmat.cpp:52:13: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  stkmat.cpp:77:13: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SpaceTimeBSS.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'NLMR'
Package suggested but not available for checking: 'earlywarnings'
Unknown package 'earlywarnings' in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Unknown package 'sparsebn' in Rd xrefs
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'RandomFields'
checkRd: (-1) grid2latlong.Rd:22: Escaped LaTeX specials: \$
checkRd: (-1) latlong2grid.Rd:22: Escaped LaTeX specials: \$
Package suggested but not available for checking: 'INLA'
Package suggested but not available for checking: 'INLA'
Found the following significant warnings:
  ./KWD_Histogram2D.h:2542:47: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./KWD_Histogram2D.h:2652:47: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./KWD_Histogram2D.h:2986:48: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./KWD_Histogram2D.h:3104:48: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SpatialKWD.Rcheck/00install.out' for details.
checkRd: (-1) sarorderedprobit.Rd:84: Escaped LaTeX specials: \#
Found the following significant warnings:
  ./spatialreg.h:31:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./spatialreg.h:32:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./spatialreg.h:33:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ml_sse.c:44:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ml_sse.c:130:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ml_sse.c:209:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spatialreg.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'RandomFields'
Unknown package 'RandomFields' in Rd xrefs
checkRd: (-1) ants.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) ants.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) ants.Rd:36: Escaped LaTeX specials: \& \&
checkRd: (-1) ants.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) ants.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) ants.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) ants.Rd:124: Escaped LaTeX specials: \&
Depends: includes the non-default packages:
  'spatstat.geom', 'spatstat.random', 'spatstat.core',
  'spatstat.linnet', 'spatstat.data', 'spatstat', 'rpanel', 'tcltk'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom',
  'spatstat.random', 'spatstat.core', 'spatstat.linnet', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Found the following significant warnings:
  netbase.c:17:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spatstat.Knet.Rcheck/00install.out' for details.
Found the following significant warnings:
  linScrossdist.c:31:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  linSnncross.c:26:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  linSnncross.c:26:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  linSpairdist.c:36:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./linknnd.h:71:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./linknnd.h:71:35: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  linvknndist.c:61:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spatstat.linnet.Rcheck/00install.out' for details.
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.sparse', 'spatstat.geom',
  'spatstat.random', 'spatstat.core', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Package suggested but not available for checking: 'RandomFields'
Unknown package 'RandomFields' in Rd xrefs
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  allspc.c:850:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  allspc.c:1117:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spc.Rcheck/00install.out' for details.
checkRd: (-1) euklid.ewma.arl.Rd:23: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'spDataLarge'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Roadmap of specklestar package
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) image.plot.Rd:78: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  '.neig'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following files/directories:
  'AlphaGA_3.txt' 'AlphaML_3.txt' 'BetaGA_3.txt' 'BetaML_3.txt'
  'Performance_GA_ML_ 3 .pdf' 'SPIGA_3Pmon.Pm_St1.pdf'
  'SPIGA_3Pmon.Pm_St2.pdf' 'SPI_AG_3.txt' 'SPI_ML_3.txt'
  'SPI_ML_3Pm_St1.pdf' 'SPI_ML_3Pm_St2.pdf' 'SPI_ML_3Pm_St3.pdf'
  'SPI_ML_3Pm_St4.pdf' 'SPI_PARAM_3.txt' 'SPI_PARAM_3Pm_St1.pdf'
  'SPI_PARAM_3Pm_St2.pdf' 'SPI_PARAM_3Pm_St3.pdf'
  'SPI_PARAM_3Pm_St4.pdf'
checkRd: (-1) PimaIndiansDiabetes_long.Rd:14: Escaped LaTeX specials: \^
checkRd: (-1) PimaIndiansDiabetes_wide.Rd:16: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  CV_Split_WEN.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./CV_WEN.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./WEN.hpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./CV_Split_WEN.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Split_WEN.hpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  CV_Split_WEN_Main.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  CV_WEN.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  Split_WEN.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  Split_WEN_Main.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  WEN.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SplitGLM.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Feature Changes
Found the following significant warnings:
  timeObj.c:34:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  timeObj.c:63:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  zoneObj.c:29:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  zoneObj.c:52:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/splusTimeDate.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./spMC.h:44:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  spMC.c:303:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spMC.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'OpenML'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./maqmap.h:62:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  maqmap.c:15:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spp.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./sp.h:95:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sp.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    updates of 10th May 2021
Found the following significant warnings:
  update_t.cpp:14:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spruce.Rcheck/00install.out' for details.
checkRd: (-1) shypEstFun.Rd:52: Escaped LaTeX specials: \$
checkRd: (-1) shypEstFun.Rd:54: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  ./mathematics.h:10:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./mathematics.h:11:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spTDyn.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./mathematics.h:10:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./mathematics.h:11:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spTimer.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) B_sraAutoreg.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) C_sraMechanistic.Rd:68: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  SRM_RCPP_SRM_ARBSRM.cpp:83:18: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  SRM_RCPP_SRM_ARBSRM.cpp:90:18: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  SRM_RCPP_SRM_ARBSRM.cpp:189:17: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  SRM_RCPP_SRM_ARBSRM.cpp:190:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  SRM_RCPP_SRM_ARBSRM.cpp:230:17: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  SRM_RCPP_SRM_ARBSRM.cpp:231:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  SRM_RCPP_SRM_ARBSRM.cpp:235:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  SRM_RCPP_SRM_ARBSRM.cpp:238:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/srm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./myssh.h:20:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:12:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:21:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  session.c:238:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tunnel.c:70:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tunnel.c:84:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  writer.c:43:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ssh.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'scanstatistics'
checkRd: (-1) Snacks.Rd:6: Escaped LaTeX specials: \~
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Major changes
    Bug fixes
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) katrina.Rd:36: Escaped LaTeX specials: \&
Found the following significant warnings:
  include/misc/adaptiveRadixTree.h:54:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  misc_adaptiveRadixTree.c:195:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/stan4bart.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    To do
Package suggested but not available for checking: 'starsdata'
checkRd: (-1) multiCUMSUM.Rd:33: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'testmat.sdml' 'testmat2.sdml'
Package suggested but not available for checking: 'asreml'
Package suggested but not available for checking: 'asreml'
Package suggested but not available for checking: 'asreml'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following possibly unsafe calls:
File 'statnet.common/R/control.utilities.R':
  unlockBinding("snctrl", environment(snctrl))
  unlockBinding("snctrl", environment(update_my_snctrl))
Package suggested but not available for checking: 'networksis'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) stdGlm.Rd:93: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  CV_WEN.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./WEN.hpp:8:13: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./CV_WEN.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  Model.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Model.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  WEN.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  stepSplitReg_Main.cpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Model_Functions.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./Set_Diff.hpp:8:14: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/stepSplitReg.Rcheck/00install.out' for details.
Found the following significant warnings:
  rcpp_cov_est1d.cpp:45:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  rcpp_cov_est1d.cpp:50:14: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/stfit.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'corrviz.html'
GNU make is a SystemRequirements.
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Initial TODO
Running 'testthat.R' [3s/8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(stockfish)
  > 
  > test_check("stockfish")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 18 ]
  
  == Failed tests ================================================================
  -- Failure (test-fish.R:13:3): engine works ------------------------------------
  any(engine$log == "readyok") is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 18 ]
  Error: Test failures
  Execution halted
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'myNewStrat.R'
Package suggested but not available for checking: 'StrathE2E2examples'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  osod.cpp:55:6: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/StratifiedSampling.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./dist.h:11:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./dist.h:19:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  qgram.c:87:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  qgram.c:132:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  qgram.c:196:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/stringdist.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'STRaitRazoR'
efpFunctional: multiple local function definitions for 'plotProcess'
  with different formal arguments
mefp.efp: multiple local function definitions for 'computeEmpProc' with
  different formal arguments
checkRd: (-1) SP2001.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) SP2001.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) SP2001.Rd:12: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) is_shebang.Rd:14: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./rk_sobol.h:108:11: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./rk_sobol.h:109:51: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  rk_mt.c:118:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rk_sobol.c:486:48: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/subrank.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Found the following significant warnings:
  ../inst/include/sundials/sundials_nvector.h:163:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../inst/include/sundials/sundials_nonlinearsolver.h:131:56: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../inst/include/sundials/sundials_matrix.h:106:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ../inst/include/sundials/sundials_linearsolver.h:137:50: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sundials/sundials/sundials_linearsolver.c:28:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sundials/sundials/sundials_matrix.c:29:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sundials/sundials/sundials_nonlinearsolver.c:26:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sundials/sundials/sundials_nvector.c:28:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sundialr.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'extraTrees'
Unknown package 'extraTrees' in Rd xrefs
Package suggested but not available for checking: 'extraTrees'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'INLA'
Found the following significant warnings:
  surveillance.c:5:24: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/surveillance.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) estweights.Rd:42: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'gurobi'
Package suggested but not available for checking: 'INLA'
GNU make is a SystemRequirements.
Package suggested but not available for checking: 'distr6'
Unknown package 'distr6' in Rd xrefs
Found the following significant warnings:
  agsurv3.c:66:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  survreg6.c:67:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  survreg7.c:76:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  survregc1.c:51:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/survival.Rcheck/00install.out' for details.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ChangesInVolatility.cpp:47:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/svars.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) diabetes.Rd:18: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'swephRdata'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    CRAN release
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Additional functions and data sets
    Amendments to functions
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    pre-release switchboard (2020 - 2021)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'cplexAPI'
Packages suggested but not available for checking: 'cplexAPI', 'clpAPI'
Found the following math rendering problems:
optObj-class.Rd:240: Undefined control sequence: \boldmath in \mbox{\boldmath$Sv$\unboldmath...
robAna.Rd:53-67: Undefined control sequence: \boldmath in ...       & \mbox{\boldmath$c$\unboldmath}...
setRhsZero-methods.Rd:18: Undefined control sequence: \boldmath in \mbox{\boldmath$Sv$\unboldmath...
sysBiolAlg_fba-class.Rd:114-126: Undefined control sequence: \boldmath in ...       & \mbox{\boldmath$c$\unboldmath}...
sysBiolAlg_fba-class.Rd:132-135: Undefined control sequence: \boldmath in 
        \mbox{\boldmath$c$\unboldmath}...
sysBiolAlg_fbaEasyConstraint-class.Rd:93-105: Undefined control sequence: \boldmath in ...       & \mbox{\boldmath$c$\unboldmath}...
sysBiolAlg_fbaEasyConstraint-class.Rd:111-114: Undefined control sequence: \boldmath in 
        \mbox{\boldmath$c$\unboldmath}...
sysBiolAlg_fv-class.Rd:139-152: Undefined control sequence: \boldmath in ...       & \mbox{\boldmath$Sv$\unboldmath...
sysBiolAlg_lmoma-class.Rd:145-165: No such environment: minipage in ...       & \begin{minipage}[b]{5em}
        ...
sysBiolAlg_lmoma-class.Rd:167-169: Undefined control sequence: \boldmath in 
      \mbox{\boldmath$v$\unboldmath}...
sysBiolAlg_lmoma-class.Rd:177-205: No such environment: minipage in ...       & \begin{minipage}[b]{5em}
        ...
sysBiolAlg_moma-class.Rd:131-148: No such environment: minipage in ...       & \begin{minipage}[b]{5em}
        ...
sysBiolAlg_moma-class.Rd:155-157: Undefined control sequence: \boldmath in 
      \mbox{\boldmath$v$\unboldmath}...
sysBiolAlg_mtf-class.Rd:160-179: No such environment: minipage in ...      &  \begin{minipage}[b]{2.5em}
      ...
sysBiolAlg_mtf-class.Rd:181-184: Undefined control sequence: \boldmath in 
        \mbox{\boldmath$c$\unboldmath}...
sysBiolAlg_room-class.Rd:157-177: No such environment: minipage in ...       & \begin{minipage}[b]{5em}
        ...
Found the following significant warnings:
  sylcount_native.c:11:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sylcount_nthreads.c:9:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  sylcount_nthreads.c:31:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sylcount.Rcheck/00install.out' for details.
Packages suggested but not available for checking: 'sylly.de', 'sylly.es'
checkRd: (-1) HINoV.SDA.rd:5: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package required but not available: 'harmony'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  SymTS.c:22:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  SymTS.c:28:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SymTS.Rcheck/00install.out' for details.
Found the following significant warnings:
  syncrng.c:192:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  syncrng.c:231:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  syncrng.c:236:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  syncrng.c:241:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SyncRNG.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'test.csv'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  exec.c:34:26: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  exec.c:41:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  exec.c:115:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sys.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  '.xls' 'attenu.xls' 'chick1.xls' 'chick2.xls' 'generic1.xls'
  'hands.xls' 'table1.xls'
'LazyData' is specified without a 'data' directory
checkRd: (-1) tmCtypes.Rd:22: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [42s/113s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > Sys.setenv(R_TESTS = "")
  > library(testthat)
  > library(tableschema.r)
  > 
  > test_check("tableschema.r")
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 525 ]
  
  == Failed tests ================================================================
  -- Failure (test-types.castTime.R:64:5): format "default" should check "06:00:00" as "06:00:00" --
  types.castTime(TESTS[[j]]$format, TESTS[[j]]$value) not equal to TESTS[[j]]$result.
  1/1 mismatches
  x[1]: "tableschema.error"
  y[1]: "06:00:00"
  -- Failure (test-types.castTime.R:64:5): format "default" should check "06:00:00" as "06:00:00" --
  types.castTime(TESTS[[j]]$format, TESTS[[j]]$value) not equal to TESTS[[j]]$result.
  1/1 mismatches
  x[1]: "tableschema.error"
  y[1]: "06:00:00"
  -- Failure (test-types.castTime.R:64:5): format "any" should check "06:00:00" as "06:00:00" --
  types.castTime(TESTS[[j]]$format, TESTS[[j]]$value) not equal to TESTS[[j]]$result.
  1/1 mismatches
  x[1]: "tableschema.error"
  y[1]: "06:00:00"
  -- Failure (test-types.castTime.R:64:5): format "%H:%M" should check "06:00:00" as "06:00:00" --
  types.castTime(TESTS[[j]]$format, TESTS[[j]]$value) not equal to TESTS[[j]]$result.
  1/1 mismatches
  x[1]: "tableschema.error"
  y[1]: "06:00:00"
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 525 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) tapnet-package.Rd:40: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'tashudata'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Found the following significant warnings:
  tclust_init.c:1:81: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tclust_init.c:1:100: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tclust_init.c:1:103: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  tclust_init.c:1:123: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tclust.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  tdt.c:5:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tdt.c:191:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tdthap.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'R2wd'
checkRd: (-1) R2txt.Rd:164: Escaped LaTeX specials: \#
checkRd: (-1) bct.Rd:18: Escaped LaTeX specials: \^
checkRd: (-1) bct.Rd:19: Escaped LaTeX specials: \^
checkRd: (-1) ineq.Rd:10: Escaped LaTeX specials: \&
checkRd: (-1) put.points.demo.Rd:39: Escaped LaTeX specials: \^
checkRd: (-1) run.cor.examp.Rd:10: Escaped LaTeX specials: \^
checkRd: (-1) run.cor.examp.Rd:31: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_state.h:33:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:380:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:381:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:382:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_wtstate.h:32:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:585:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:586:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ergm/include/ergm_stubs.c:587:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tergm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  proj_conf_test.c:5:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/terra.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'gurobi'
'LazyData' is specified without a 'data' directory
Problems with news in 'inst/NEWS.Rd':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages which this enhances but not available for checking:
  'mnlogit', 'Zelig'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Found the following HTML validation problems:
read_transcript.html:174:4: Warning: <a> converting backslash in URI to slash
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ArgumentException.cpp:5:23: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ArgumentException.cpp:5:34: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  FileException.cpp:5:23: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  FileException.cpp:5:34: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ParseException.cpp:5:23: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ParseException.cpp:5:34: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TFMPvalue.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./thor.h:18:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./thor.h:21:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./thor.h:23:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./thor.h:106:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  thor.c:9:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  thor.c:23:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  thor.c:35:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  thor.c:748:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/thor.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) CPdimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) CPdimensionalityplot.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) T2func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T2funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3dimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:26: Escaped LaTeX specials: \& \& \&
checkRd: (-1) TV.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) pcamean.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) threewayanova.Rd:24: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  sorted_range_search.cpp:34:7: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tibbletime.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Initial Release (v0.1.0)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Minor changes:
'LazyData' is specified without a 'data' directory
Running examples in 'tidyndr-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hts_recent
> ### Title: Subset Clients who had Recent Infection Test Done during a
> ###   period of Interest
> ### Aliases: hts_recent
> 
> ### ** Examples
> 
> ### Line-list of clients offered recency testing
> hts_recent_clients <- hts_recent(recency_example, from = "2021-07-01", to = "2021-10-31")
> 
> hts_pos <- hts_tst_pos(recency_example) # identifies all hts_positive clients
> # line-list positive clients offered recency testing in 'Okun' state
> hts_recent(hts_pos, state = "Okun")
Error in `validate_recent()`:
! state(s) is/are not contained in the supplied data. Check the spelling and/or case.
Backtrace:
    x
 1. \-tidyndr::hts_recent(hts_pos, state = "Okun")
 2.   \-tidyndr:::validate_recent(data, from, to, states, facilities)
 3.     \-rlang::abort("state(s) is/are not contained in the supplied data. Check the spelling and/or case.")
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  common.c:36:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tiff.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  parse.c:189:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/timechange.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) compare.Rd:46: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) dat-class.Rd:47: Escaped LaTeX specials: \_
checkRd: (-1) dat-class.Rd:48: Escaped LaTeX specials: \_
checkRd: (-1) dat-class.Rd:49: Escaped LaTeX specials: \_
checkRd: (-1) dat-class.Rd:50: Escaped LaTeX specials: \_
Found the following files/directories:
  '_paramEst.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found an obsolete/platform-specific call in the following function:
  '.my.tkdev'
Found the platform-specific device:
  'X11'
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  external_metis.c:102:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:17:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TMB.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'Rcampdf', 'tm.lexicon.GeneralInquirer'
Found the following significant warnings:
  remove.c:33:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  scan.c:26:48: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  scan.c:100:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tm.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'lasso2', 'corpus.JSS.papers'
Packages suggested but not available for checking:
  'RGtk2', 'gWidgets2RGtk2'
Found the following significant warnings:
  ./topmodel.h:10:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:12:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:13:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:14:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:16:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:18:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:19:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:21:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:23:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:25:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./topmodel.h:26:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/topmodel.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'toscaData'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /tmp/RtmpoCmb8z/R.INSTALL1dc04f5b51ee25/ToxicR/src/nlopt-src/src/util/stop.c:196:56: warning: incomplete format specifier [-Wformat]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ToxicR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'p3state.msm'
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Enhancements
    Other changes
Running examples in 'TrafficBDE-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PreProcessingLink
> ### Title: PreProcessing second model
> ### Aliases: PreProcessingLink
> 
> ### ** Examples
> 
> SpecLink <- loadDataSpecLink("163204843","1", X163204843_1)
> x <- fillMissingValues(SpecLink)
> datetime <- "2017-01-27 14:00:00" 
> newData <- fillMissingDates (x, datetime)
Error in seq.int(0, to0 - from, by) : 'to' must be a finite number
Calls: fillMissingDates -> seq.POSIXt
Execution halted
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'taxidata'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:15:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TraMineR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  aha.c:482:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  transport_init.c:13:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  transport_init.c:29:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  transport_init.c:31:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  transport_init.c:35:38: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/transport.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) dcc.Rd:227: Escaped LaTeX specials: \&
checkRd: (-1) seascorr.Rd:128: Escaped LaTeX specials: \&
Package suggested but not available for checking: 'TreeDistData'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Bug fixes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) ltriangle.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) triangle.Rd:70: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) sepIdGaps.Rd:18: Escaped LaTeX specials: \_ \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Changes
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Running examples in 'tsbox-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ts_c
> ### Title: Collect Time Series
> ### Aliases: ts_c
> 
> ### ** Examples
> 
> head(ts_c(ts_df(EuStockMarkets), AirPassengers))
Error in .POSIXct(unclass(x) * 86400, tz = tz, ...) : 
  unused argument (origin = "1970-01-01")
Calls: head ... unify_time_class -> lapply -> FUN -> as.POSIXct -> as.POSIXct.Date
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) disaggregate.Rd:56: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  bdstest.c:84:8: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  bdstest.c:227:7: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  garch.c:26:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  garch.c:27:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  garch.c:28:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  garch.c:128:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tseries.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Updates for the development version (0.1.0.9000) on Github
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Found the following significant warnings:
  libqhull/geom2.c:1950:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TukeyRegion.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./pulse.h:3:35: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./pulse.h:3:51: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./pulse.h:3:61: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  pulse.c:3:35: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  pulse.c:3:51: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  pulse.c:3:61: warning: invalid UTF-8 in comment [-Winvalid-utf8]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tuneR.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) lindner.Rd:44: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: 'sl3'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
Problems with news in 'NEWS.md':
No news entries found.
Found the following significant warnings:
  simz.cpp:31:14: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ubms.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  interface.c:114:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ucminf.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    uktrans_get is fixed when start_date is used (#2)
    Extra layer of of NULL returns to fail gracefully with an informative message.
    Removed travis & appveyor and using gh_actions instead.
    Using gh-pages to create the pkgdown website.
    Create an app as vignette page to search with the help of uklr.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ursa.c:3714:9: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ursa.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'USAboundariesData'
Package suggested but not available for checking: 'USA.state.boundaries.data'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running 'testthat.R' [5s/8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(usincometaxes)
  > 
  > test_check("usincometaxes")
  [ FAIL 1 | WARN 48 | SKIP 0 | PASS 9 ]
  
  == Failed tests ================================================================
  -- Error (test-calculate_taxes.R:98:3): All interface options return same values --
  <subscriptOutOfBoundsError/error/condition>
  Error in `from_taxsim_cols()[[col]]`: subscript out of bounds
  Backtrace:
      x
   1. \-usincometaxes::taxsim_calculate_taxes(...) at test-calculate_taxes.R:98:2
   2.   \-usincometaxes:::clean_from_taxsim(from_taxsim)
  
  [ FAIL 1 | WARN 48 | SKIP 0 | PASS 9 ]
  Error: Test failures
  Execution halted
checkRd: (-1) aosat.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) aosat.Rd:21: Escaped LaTeX specials: \_
checkRd: (-1) arctic.oscillations.Rd:19: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) arctic.oscillations.Rd:20: Escaped LaTeX specials: \_
checkRd: (-1) babies.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) babies.Rd:41: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:43: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) exec.pay.Rd:5: Escaped LaTeX specials: \$
checkRd: (-1) sp500.excess.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) sp500.excess.Rd:6: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Running examples in 'utc-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fromUTC
> ### Title: fromUTC
> ### Aliases: fromUTC
> 
> ### ** Examples
> 
>  fromUTC( as.POSIXct("1991-06-29 05:27:25", tz = "UTC") )
Error in .POSIXct(x, tz, ...) : 
  unused argument (format = "%Y-%m-%d %H:%M:%S")
Calls: fromUTC -> as.POSIXct -> as.POSIXct.default
Execution halted
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rand.c:90:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rand.c:92:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rand.c:103:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rand.c:138:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/uuid.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'vaers', 'vaersND'
Packages suggested but not available for checking: 'vaers', 'vaersND'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'PredValidationPlots.pdf' 'RepStructValidationPlots.pdf'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Missing or unexported object: 'h3jsr::h3_to_polygon'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following math rendering problems:
aep.Rd:8-56: Undefined control sequence: \eqn in ...t], & \mbox{if \eqn{x > 0},}
  \end{...
ast.Rd:8-41: Undefined control sequence: \eqn in ...}}, &
  \mbox{if \eqn{x > 0},}
  \end{...
asypower.Rd:8-66: Undefined control sequence: \eqn in ...t], & \mbox{if \eqn{x > 0},}
  \end{...
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) randomVarImpsRFplot.Rd:97: Escaped LaTeX specials: \&
checkRd: (-1) varSelImpSpecRF.Rd:83: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) irf.Rd:111: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) Glass.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) Glass.Rd:22: Escaped LaTeX specials: \&
checkRd: (-1) Glass.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) Glass.Rd:24: Escaped LaTeX specials: \&
checkRd: (-1) Glass.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) Glass.Rd:28: Escaped LaTeX specials: \&
Found the following HTML validation problems:
RequestHandlerCrul.html:50:6: Warning: missing </span> before <p>
RequestHandlerCrul.html:50:92: Warning: inserting implicit <span>
RequestHandlerCrul.html:53:6: Warning: missing </span> before <p>
RequestHandlerCrul.html:53:96: Warning: inserting implicit <span>
RequestHandlerHttr.html:53:6: Warning: missing </span> before <p>
RequestHandlerHttr.html:53:92: Warning: inserting implicit <span>
lightswitch.html:113:79: Warning: inserting implicit <p>
lightswitch.html:150:58: Warning: inserting implicit <p>
lightswitch.html:181:33: Warning: inserting implicit <p>
lightswitch.html:202:42: Warning: inserting implicit <p>
request-matching.html:83:57: Warning: inserting implicit <p>
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  computeCox.c:15:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/vdra.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) MOStest.Rd:9: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) value.Rd:32: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  vliC.cpp:539:7: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/VeryLargeIntegers.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ex121.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex124.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex125.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex127.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex32.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex33.Rd:18: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) huse.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) checkTS.VGAMextra.Rd:176: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    NEW FEATURES
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    NEWS UPDATES:
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ../../headers/include/lp_rlp.h:1660:16: warning: 'static' function 'input' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/volesti.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    vortexRdata pre-1.0.3
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) compute.means.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) norm.wattfabricius.Rd:5: Escaped LaTeX specials: \&
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  functions.c:101:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  functions.c:220:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  functions.c:221:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  wrow.c:54:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  wrow.c:157:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/waveband.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'ReconstructedData.txt' 'ReconstructedDataStDev.txt'
  'ResampledReconstructions.txt'
  'ResampledReconstructionsStandardVariation.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:20:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/wdnet.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'prepr'
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ./cleancall.h:31:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  cleancall.c:38:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rweb.c:153:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  rweb.c:214:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/webfakes.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:11:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/WeightedCluster.Rcheck/00install.out' for details.
Package suggested but not available for checking: 'ATE'
Unknown package 'ATE' in Rd xrefs
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  corFunctions.c:59:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  networkFunctions.c:182:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/WGCNA.Rcheck/00install.out' for details.
checkRd: (-1) rgcolors.func.Rd:27: Escaped LaTeX specials: \#
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    Major changes
    Minor changes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:10:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:11:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:12:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  trace_back.c:10:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  trace_back.c:11:39: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  trace_back.c:32:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  trace_back_backtrace.c:115:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  trace_back_unwind.c:89:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/winch.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  random_wrap.c:9:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/wnominate.Rcheck/00install.out' for details.
Problems with news in 'NEWS.md':
No news entries found.
Found the following files/directories:
  'aphiainfo.csv' 'tax.csv'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Malformed Description field: should contain one or more complete sentences.
Malformed Description field: should contain one or more complete sentences.
Found the following significant warnings:
  assp/freqconv.c:73:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  assp/ksv.h:30:19: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  assp/math.c:190:8: warning: invalid UTF-8 in comment [-Winvalid-utf8]
  ./wrassp.h:197:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  types.c:10:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  types.c:38:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  types.c:65:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  wrassp_init.c:20:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  wrassp_init.c:21:28: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  wrassp_init.c:22:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/wrassp.Rcheck/00install.out' for details.
Malformed Title field: should not end in a period.
Found the following significant warnings:
  write_xlsx.c:208:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  minizip/zip.c:189:60: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/writexl.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'RP2_data_1.txt' 'RP2_data_4.txt' 'RP2_qtl_1.txt' 'RP2_qtl_4.txt'
  'hp1_effect_qtl.txt' 'hp1_freq_mrk.txt' 'hp1_freq_qtl.txt'
  'hp1_genome.txt' 'hp1_last_hp_data.txt' 'hp1_lm_mrk.txt'
  'hp1_lm_qtl.txt' 'hp1_lm_qtl_mrk.txt' 'hp1_mrk.txt' 'hp1_qtl.txt'
  'hp2_effect_qtl.txt' 'hp2_freq_mrk.txt' 'hp2_freq_qtl.txt'
  'hp2_genome.txt' 'hp2_last_hp_data.txt' 'hp2_lm_mrk.txt'
  'hp2_lm_qtl.txt' 'hp2_lm_qtl_mrk.txt' 'hp2_mrk.txt' 'hp2_qtl.txt'
  'my_RP_data_1.txt' 'my_RP_data_4.txt' 'my_RP_mrk_1.txt'
  'my_RP_mrk_4.txt'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'xgb.txt'
Found the following significant warnings:
  init.c:51:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/xgboost.Rcheck/00install.out' for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in 'NEWS.md':
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:24:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:25:29: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:71:31: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:72:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/xml2.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  DocParse.c:58:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  DocParse.c:1026:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  NodeGC.c:424:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  RUtils.c:289:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  Utils.c:149:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  libxmlFeatures.c:11:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/XML.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) read.npc.vpc.results.Rd:16: Escaped LaTeX specials: \_
checkRd: (-1) read.npc.vpc.results.Rd:19: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_
checkRd: (-1) read.npc.vpc.results.Rd:22: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  'xtable.html' 'xtable.tex'
Found the following files/directories:
  'OPT.csv' 'testTecan_defaultLiquid.csv' 'testTecan_setLiquid.csv'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'fts'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'RNRCS', 'metScanR'
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rcpparma_hello_world.cpp:377:37: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ziphsmm.Rcheck/00install.out' for details.
Found the following significant warnings:
  ./miniz.h:743:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  ./miniz.h:796:45: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  miniz.c:2149:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  miniz.c:2884:45: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tools/../miniz.h:743:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  tools/../miniz.h:796:45: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/zip.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'zdat'
Problems with news in 'NEWS.md':
  Cannot extract version info from the following section titles:
    NEW DEPENDENCIES
checkRd: (-1) ZIClass.Rd:87: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:72: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:74: Escaped LaTeX specials: \_
checkRd: (-1) zid.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:63: Escaped LaTeX specials: \_
Package suggested but not available for checking: 'SDMTools'
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  fnToExport.cpp:415:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ZVCV.Rcheck/00install.out' for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  abctools.c:14:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:29:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:54:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:71:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:79:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:80:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:81:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:82:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:105:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:126:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:172:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:195:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:242:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  abctools.c:250:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/abctools.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘acceldata2.RData’
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Packages suggested but not available for checking:
  'RGtk2', 'gWidgets2RGtk2'
Problems with news in ‘NEWS.md’:
No news entries found.
Running examples in ‘activAnalyzer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: average_results
> ### Title: Average results over valid days
> ### Aliases: average_results
> 
> ### ** Examples
> 
> file <- system.file("extdata", "acc.agd", package = "activAnalyzer")
> mydata <- prepare_dataset(data = file)
> mydata_with_wear_marks <- mark_wear_time(
+     dataset = mydata, 
+     TS = "TimeStamp", 
+     to_epoch = 60,
+     cts  = "vm",
+     frame = 90, 
+     allowanceFrame = 2, 
+     streamFrame = 30
+     )
Warning: Expected 2 pieces. Missing pieces filled with `NA` in 5 rows [1081, 2521, 3961, 5401, 6841].
frame is 90
streamFrame is 30
allowanceFrame is 2
Error in as.POSIXlt.character(x, tz, ...) : 
  character string is not in a standard unambiguous format
Calls: mark_wear_time ... as.POSIXct.default -> as.POSIXct -> as.POSIXlt -> as.POSIXlt.character
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘activAnalyzer.Rmd’ using rmarkdown
Quitting from lines 53-67 (activAnalyzer.Rmd) 
Error: processing vignette ‘activAnalyzer.Rmd’ failed with diagnostics:
character string is not in a standard unambiguous format
--- failed re-building ‘activAnalyzer.Rmd’

SUMMARY: processing the following file failed:
  ‘activAnalyzer.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
activityCounts-package.html:23:4 (activityCounts-package.Rd:9): Warning: <img> attribute "align" not allowed for HTML5
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  dpq.c:69:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:128:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:201:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:272:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:308:20: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:454:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:534:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:651:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:742:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:827:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:927:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpq.c:1002:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpqphtype.c:35:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dpqphtype.c:126:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  random.c:59:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  random.c:155:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  random.c:269:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  random.c:379:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  random.c:486:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  randomphtype.c:22:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/actuar.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Example.jpeg’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Unknown package ‘MHadaptive’ in Rd xrefs
checkRd: (-1) ada.Rd:171: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) chickenk.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) multispati.Rd:54: Escaped LaTeX specials: \$
checkRd: (-1) randboot.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) kernelUD.Rd:210: Escaped LaTeX specials: \&
checkRd: (-1) orthobasis.Rd:106: Escaped LaTeX specials: \&
checkRd: (-1) orthobasis.Rd:110: Escaped LaTeX specials: \&
checkRd: (-1) treePart.Rd:33: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [2s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(adobeanalyticsr)
  > 
  > test_check("adobeanalyticsr")
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 94 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-date_utilities.R:22'): make_timeframe works as expected ──────
  `date_result` not equal to `datetime_result`.
  1/1 mismatches
  x[1]: "2021-01-01T00:00:00/2021-01-10T23:59:59"
  y[1]: "2021-01-01/2021-01-10 23:59:59"
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 94 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  adssub.h:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  adssub.c:4:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:46:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:66:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:73:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:79:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:101:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:159:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:945:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:957:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:975:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:997:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:1076:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:1158:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:1216:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:1292:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:1373:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:1947:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  triangulate.c:1998:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ads.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘table_AeRobiology’
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) BerryMielke.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) BlairLacy.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) Kvalseth.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) consensus.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) dsquared.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) l.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) lsquared.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) lsquared.variance.Rd:12: Escaped LaTeX specials: \&
checkRd: (-1) var.variance.Rd:12: Escaped LaTeX specials: \&
Running examples in ‘agroclim-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ehe
> ### Title: Extreme Heat Exposure (EHE)
> ### Aliases: ehe
> 
> ### ** Examples
> 
> 
>             ehe(mx = daily_tmax,
+             dates = seq.Date(as.Date('1981-01-01'),
+                     as.Date('2010-12-31'), by ='day'),
+             op = 'first')
Warning in as.character.POSIXt(as.POSIXlt(x), ...) :
  as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?
Warning in as.character.POSIXt(as.POSIXlt(x), ...) :
  as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?
Error in wini:wend : argument of length 0
Calls: ehe -> ff -> rle
Execution halted
checkRd: (-1) adapt.Rd:41: Escaped LaTeX specials: \$
Package suggested but not available for checking: ‘RandomFields’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘ans_19-2.jpg’ ‘display2d_19-2.jpg’ ‘dist(3)_19-2.jpg’
  ‘dist(4)_19-2.jpg’ ‘dist(mirror)_19-2.jpg’ ‘dist(mirror2)_19-2.jpg’
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘stuve.pdf’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) ALF.Rd:47: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) optimalfrequency.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:31: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) UN1.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) rateprof.Rd:64: Escaped LaTeX specials: \&
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) varrob.Rd:44: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘Zelig’
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) deshrink.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) deshrink.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) plot.mat.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) plot.wa.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) predict.prcurve.Rd:5: Escaped LaTeX specials: \&
Package which this enhances but not available for checking: ‘SparkR’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘BH-0.05-ListOfGenes.txt’ ‘BH-0.05-VM-ListOfGenes.txt’
  ‘CompleteListOfGenes.txt’ ‘GenesOutOfAnalysis.txt’
  ‘GenesOutOfAnalysis_NotEnoughObs.txt’
  ‘GenesOutOfAnalysis_NullVar.txt’ ‘VM-CompleteListOfGenes.txt’
  ‘bonferroni-0.05-ListOfGenes.txt’
  ‘bonferroni-0.05-VM-ListOfGenes.txt’
checkRd: (-1) AncestryMapper2.0-package.Rd:33: Escaped LaTeX specials: \~
checkRd: (-1) AncestryMapper2.0-package.Rd:38: Escaped LaTeX specials: \~
Problems with news in ‘NEWS.md’:
No news entries found.
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) PV_post_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_post_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘SportsAnalytics’
Found the following significant warnings:
  init.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Anthropometry.Rcheck/00install.out’ for details.
Found the following significant warnings:
  header.h:50:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  bicriterion_iterated_local_search_call.c:510:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/anticlust.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in ‘aoristic-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aoristic.df
> ### Title: Calculate aoristic weights
> ### Aliases: aoristic.df
> 
> ### ** Examples
> 
> df <- aoristic.df(dcburglaries, 'X', 'Y', 'StartDateTime', 'EndDateTime')
Warning:  32 failed to parse.
Warning:  6 failed to parse.
Error in if (time.span >= 10080) { : 
  missing value where TRUE/FALSE needed
Calls: aoristic.df
Execution halted
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  me.h:122:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  me.c:234:7: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ape.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following calls to attach():
File ‘apollo/R/apollo_attach.R’:
  attach(as.list(apollo_beta), warn.conflicts = FALSE)
  attach(database, warn.conflicts = FALSE)
  attach(draws, warn.conflicts = FALSE)
  attach(randcoeff, warn.conflicts = FALSE)
  attach(lcpars, warn.conflicts = FALSE)
See section ‘Good practice’ in ‘?attach’.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘BayesianTools’
Problems with news in ‘NEWS.md’:
No news entries found.
Unknown package ‘BayesianTools’ in Rd xrefs
Found the following files/directories:
  ‘APBinary_PPV.csv’ ‘APBinary_TPF.csv’
  ‘APBinary_ap_summary(method=perturbation,B=1500).csv’
  ‘APBinary_auc_summary(method=perturbation,B=1500).csv’
  ‘APSurv_PPV.csv’ ‘APSurv_TPF.csv’
  ‘APSurv_ap_summary(method=bootstrap,B=500).csv’
  ‘APSurv_auc_summary(method=bootstrap,B=500).csv’
  ‘CompareAP_Binary_dap_summary(method=none).csv’
  ‘CompareAP_Survival_dap_summary(method=bootstrap,B=500).csv’
checkRd: (-1) AQuadtree-package.Rd:11: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Packages suggested but not available for checking:
  'sfit', 'expectile', 'HaarSeg', 'mpcbs'
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘ARTP’
Found the following significant warnings:
  ARTP2_init.c:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ARTP2.Rcheck/00install.out’ for details.
Found the following significant warnings:
  ptree.c:47:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  warm.c:217:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/arules.Rcheck/00install.out’ for details.
Found the following significant warnings:
  ptree.c:32:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ptree.c:192:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ptree.c:200:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ptree.c:768:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/arulesSequences.Rcheck/00install.out’ for details.
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/processx/include/processx/unix-sockets.h:36:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/processx/include/processx/unix-sockets.c:118:29: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  asciicast.h:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  r.c:26:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  common.c:76:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/asciicast.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘MSToutput.txt’
Package which this enhances but not available for checking: ‘asreml’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘asteRiskData’
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Unknown package ‘snpar’ in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  driver.c:114:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  driver.c:161:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  driver.c:199:17: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/audio.Rcheck/00install.out’ for details.
File ‘audio/libs/audio.so’:
  Found non-API call to R: ‘R_checkActivity’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘exemplary_input1.txt’ ‘exemplary_input2.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  utilities.h:67:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utilities.h:68:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utilities.h:83:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Ball_omp.h:6:19: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Ball_omp.h:7:19: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Ball_omp.h:8:19: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  bd_gwas.c:260:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utilities.c:1438:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utilities.c:1446:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utilities.c:1455:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Ball.Rcheck/00install.out’ for details.
Found the following significant warnings:
  bamlss_functions.c:117:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bamlss.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) barcode.Rd:52: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:16:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BART.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Earlier versions
Found the following significant warnings:
  gamma.c:327:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  hypergeoF.c:4:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  polevl.c:53:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  polevl.c:79:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  psi.c:122:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BAS.Rcheck/00install.out’ for details.
checkRd: (-1) bas.lm.Rd:425: Escaped LaTeX specials: \&
Package which this enhances but not available for checking: ‘rPython’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) BayesComm-package.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) dilution.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:17: Escaped LaTeX specials: \$
Found the following significant warnings:
  bayesDccGarch.c:48:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  bayesDccGarch.c:110:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  bayesDccGarch.c:172:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bayesDccGarch.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  rgig.c:42:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BayesLN.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following significant warnings:
  /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ forming offset [112, 115] is out of the bounds [0, 112] of object ‘cbetaAllRow’ with type ‘arma::uvec’ {aka ‘arma::Col<unsigned int>’} [-Warray-bounds]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bayesm.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) pulse_of_the_nation.Rd:10: Escaped LaTeX specials: \$
GNU make is a SystemRequirements.
checkRd: (-1) bart.Rd:271: Escaped LaTeX specials: \_
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
checkRd: (-1) create_ThetaMatrix.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) create_ThetaMatrix.Rd:41: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_50_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_50_biascor_1.RData’
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘fabiabreast.txt’
Package suggested but not available for checking: ‘INLA’
checkRd: (-1) tlsce.Rd:51: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:55: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:90: Escaped LaTeX specials: \_
checkRd: (-1) tlsce.Rd:93: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) Glendalough.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Sluggan.Rd:19: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'kBET', 'lisi', 'harmony', 'dlfUtils'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘dump.txt’
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘beast_plot_toy.pdf’
GNU make is a SystemRequirements.
Found the following files/directories:
  ‘alist.txt’ ‘rpkg’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  load.c:11:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nanotime.h:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nanotime.h:7:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mark.c:75:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mark.c:118:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mark.c:119:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nanotime.c:61:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nanotime.c:71:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  process_memory.c:79:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bench.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Checking should be performed on sources prepared by ‘R CMD build’.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) scrHpd.Rd:30: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) bgmm-package.Rd:23: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
checkRd: (-1) dotPlot.Rd:56: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) Jeffreysbs.Rd:17: Escaped LaTeX specials: \&
Found the following significant warnings:
  rbimax.c:326:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/biclust.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘ffbase’
Package suggested but not available for checking: ‘INLA’
Found the following significant warnings:
  lib.h:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lib.c:3:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bigGP.Rcheck/00install.out’ for details.
Found the following calls to data() loading into the global environment:
File ‘biglm/R/bigglm.R’:
  data(reset = TRUE)
  data(reset = FALSE)
See section ‘Good practice’ in ‘?data’.
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘rrelaxiv’
Checking should be performed on sources prepared by ‘R CMD build’.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rename.h:420:41: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BigQuic.Rcheck/00install.out’ for details.
Found the following files/directories:
  ‘outputs’
Running ‘testthat.R’ [4s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(bigrquery)
  > 
  > test_check("bigrquery")
  [ FAIL 1 | WARN 1 | SKIP 66 | PASS 128 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • Authentication not available (8)
  • No BigQuery access credentials available (55)
  • On CRAN (1)
  • On Linux (1)
  • bq_authable() is not TRUE (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-bq-parse.R:37'): can parse date/times ──────────────────────────
  Error in `as.character.POSIXt(dt, "%Y-%m-%dT%H:%M:%S")`: 'digits' must be numeric, integer valued
  Backtrace:
      ▆
   1. ├─testthat::expect_identical(...) at test-bq-parse.R:37:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─bigrquery:::bq_parse_single(...)
   5. │ └─jsonlite::toJSON(value, auto_unbox = TRUE)
   6. │   └─base::force(x)
   7. ├─base::as.character(dt, "%Y-%m-%dT%H:%M:%S")
   8. └─base::as.character.POSIXt(dt, "%Y-%m-%dT%H:%M:%S")
  
  [ FAIL 1 | WARN 1 | SKIP 66 | PASS 128 ]
  Error: Test failures
  Execution halted
Found the following significant warnings:
  binarizeBASCA.h:37:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  TASC.c:258:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  TASC_min.c:256:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  binarizeBASCA.c:358:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Binarize.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) BinaryEPPM.Rd:159: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘ccf_ccf_ID31_ID32_res.jpg’ ‘ccf_ccf_ID31_ID32_res.pdf’
  ‘output_ENSO_NHSST.tmp’ ‘plot_plot_ts_RAW_BIN_enso_sst.pdf’
  ‘plot_plot_ts_RAW_BIN_enso_sst01.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst02.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst03.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst04.png’ ‘plot_ts_ACER_ABRUPT.pdf’
  ‘plot_ts_ACER_ABRUPT01.png’ ‘plot_ts_ACER_ABRUPT02.png’
  ‘plot_ts_ACER_ABRUPT03.png’ ‘plot_ts_ACER_ABRUPT04.png’
  ‘salida_ACER_ABRUPT.tmp’ ‘scaterplot_scatterplot_ENSO_SST.jpg’
  ‘scaterplot_scatterplot_ENSO_SST.pdf’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) core.find.Rd:30: Escaped LaTeX specials: \_
checkRd: (-1) core.find.Rd:87: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:89: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:91: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:93: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:95: Escaped LaTeX specials: \^
checkRd: (-1) core.find.Rd:97: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
Found the following files/directories:
  ‘Plots.pdf’
Found the following files/directories:
  ‘pointshape.dbf’ ‘pointshape.shp’ ‘pointshape.shx’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘asreml’
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) tocher.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) NOS.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) specieslevel.Rd:156: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  bit.c:57:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  bit.c:68:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:24:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bit.Rcheck/00install.out’ for details.
Found the following significant warnings:
  binarizeBASCA.h:37:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  TASC.c:258:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  TASC_min.c:256:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  binarizeBASCA.c:358:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BiTrinA.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cmdstanr’
GNU make is a SystemRequirements.
checkRd: (-1) posteriorFeasibility.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) sp500Returns.Rd:4: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ forming offset [176, 183] is out of the bounds [0, 176] of object ‘nMaxCritMet’ with type ‘arma::rowvec’ {aka ‘arma::Row<double>’} [-Warray-bounds]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bmabasket.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Package suggested but not available for checking: ‘INLA’
GNU make is a SystemRequirements.
Found the following significant warnings:
  include/register.h:46:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  include/register.h:75:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  include/register.h:76:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  include/register.h:82:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  globals.c:15:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  globals.c:33:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  test.counter.c:26:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  test.counter.c:35:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bnlearn.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following significant warnings:
  common.c:15:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  random.h:12:22: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sat_search.c:106:10: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  symbolic_simulator.c:344:30: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BoolNet.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘flow’
Error(s) in re-building vignettes:
  ...
--- re-building ‘how-boomer-works.Rmd’ using rmarkdown
Quitting from lines 67-68 (how-boomer-works.Rmd) 
Error: processing vignette ‘how-boomer-works.Rmd’ failed with diagnostics:
there is no package called 'flow'
--- failed re-building ‘how-boomer-works.Rmd’

--- re-building ‘shiny.Rmd’ using rmarkdown
--- finished re-building ‘shiny.Rmd’

SUMMARY: processing the following file failed:
  ‘how-boomer-works.Rmd’

Error: Vignette re-building failed.
Execution halted
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Packages suggested but not available for checking: 'cplexAPI', 'bestsubset'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    modules 0.x
'LazyData' is specified without a 'data' directory
checkRd: (-1) bpca.Rd:85: Escaped LaTeX specials: \&
Found the following significant warnings:
  randomnumbers.h:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  randomnumbers.c:13:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BPEC.Rcheck/00install.out’ for details.
checkRd: (-1) bp_rats.Rd:41: Escaped LaTeX specials: \&
Found the following significant warnings:
  lapadj.c:34:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lapadj.c:35:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  normLogLik.c:8:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  upbqtl.c:35:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  upbqtl.c:36:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bqtl.Rcheck/00install.out’ for details.
checkRd: (-1) R2txtJG.Rd:90: Escaped LaTeX specials: \#
Packages suggested but not available for checking: 'RGtk2', 'cairoDevice'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cmdstanr’
Package suggested but not available for checking: ‘glmmADMB’
checkRd: (-1) brr-package.Rd:33: Escaped LaTeX specials: \&
Found the following significant warnings:
  BugsHelper.c:76:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BugsHelper.c:87:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BugsHelper.c:88:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BRugs.Rcheck/00install.out’ for details.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/Makefile.win
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘gvcm.cat’
Unknown package ‘gvcm.cat’ in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) kink_estimator.Rd:60: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  defns.h:671:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  defns.h:761:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  redefine.h:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  redefine.h:27:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  getdata.c:47:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  hash.h:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  modelfiles.c:197:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  modelfiles.c:521:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  modelfiles.c:592:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  modelfiles.c:778:10: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rc50.c:42:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  redefine.c:46:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  redefine.c:191:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rsample.c:59:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  top.c:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utility.c:795:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/C50.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) deleteZeroComponents.Rd:70: Escaped LaTeX specials: \& \&
Found the following significant warnings:
  cairobem.c:50:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Rapi.h:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Rapi.h:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cairotalk.c:661:23: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cairotalk.c:1552:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cairotalk.c:1588:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  xlib-backend.c:156:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Cairo.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘ReGenesees’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘tmp.txt’
Found the following files/directories:
  ‘MDA231_tree.pdf’
checkRd: (-1) caic-class.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) caic-class.Rd:15: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    captr .1.4
    captr .1.3
    captr .1.2
'LazyData' is specified without a 'data' directory
checkRd: (-1) States.Rd:48: Escaped LaTeX specials: \$
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot-methods.Rd:46: Escaped LaTeX specials: \_
checkRd: (-1) plot-methods.Rd:96: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘tidyterra’
Unknown package ‘tidyterra’ in Rd xrefs
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘GAMBoost’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘catmapdata.fixed.effects.plot.pdf’ ‘catmapdata.funnel.plot.pdf’
  ‘catmapdata.output.txt’ ‘catmapdata.random.effects.plot.pdf’
Found the following significant warnings:
  catnet_rexport.h:63:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/catnet.Rcheck/00install.out’ for details.
checkRd: (-1) belt.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) bipf.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) crime.Rd:17: Escaped LaTeX specials: \&
checkRd: (-1) da.cat.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) dabipf.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) ecm.cat.Rd:77: Escaped LaTeX specials: \&
checkRd: (-1) em.cat.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) ipf.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) logpost.cat.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) mda.cat.Rd:67: Escaped LaTeX specials: \&
checkRd: (-1) mi.inference.Rd:140: Escaped LaTeX specials: \&
checkRd: (-1) older.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) prelim.cat.Rd:67: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) tpcExample.Rd:30: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    News about the ccdf R package
Found the following significant warnings:
  median.c:10:25: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  median.c:15:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  median.c:32:22: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cclust.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘hotcold.csv’
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘out.png’ ‘out1.txt’ ‘out2.txt’
Found the following files/directories:
  ‘figure01ceg.pdf’ ‘figure02ceg.pdf’ ‘staged.tree.graph.pdf’
  ‘stratified-event-tree-plot.pdf’
'LazyData' is specified without a 'data' directory
Unexported objects imported by ‘:::’ calls:
  ‘copula:::dCdu’ ‘copula:::fitCopStart’
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘alr3’
Problems with news in ‘NEWS.md’:
No news entries found.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Major refactoring of the code
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  graph.h:85:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  session.h:40:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  session.c:29:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cgraph.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  NPPELT.c:18:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  NPPELT.c:27:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  NPPELT.c:41:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  NPPELT.c:42:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  NPPELT.c:43:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  NPPELT.c:72:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/changepoint.np.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘darts’
'LazyData' is specified without a 'data' directory
checkRd: (-1) hyptis.Rd:31: Escaped LaTeX specials: \&
Found the following files/directories:
  ‘stepres00.txt’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘countreg’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cmdstanr’
Package unavailable to check Rd xrefs: ‘cmdstanr’
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘entab’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘userfriendlyscience’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  cleancall.h:30:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cleancall.c:40:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  test.c:68:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cleancall.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    clhs_0.7-2
    clhs_0.7-0
    clhs_0.6-0
    clhs_0.5-7
    clhs_0.5-6
    clhs_0.5-3
    clhs_0.5-2
    clhs_0.5-1
    clhs_0.5-0
    clhs_0.4-3
    clhs_0.4-2
    clhs_0.4-1
    clhs_0.4-0
    clhs_0.3-2
    clhs_0.3-1
    clhs_0.3-0
    clhs_0.2-1
    clhs_0.2-0
    clhs_0.1-0
'LazyData' is specified without a 'data' directory
checkRd: (-1) diagwl.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) diagwl.Rd:5: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    clinfun (development version)
checkRd: (-1) coxphCPE.Rd:2: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) dataADaMCDISCP01.Rd:48: Escaped LaTeX specials: \&
Running ‘testthat.R’ [13s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(clinUtils)
  > 
  > test_check("clinUtils")
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 300 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (2)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_loadDataADaMSDTM.R:172'): An error is generated if the specified object to convert to date is not a date ──
  `convertToDateTime(c(1, 2))` did not throw an error.
  
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 300 ]
  Error: Test failures
  Execution halted
checkRd: (-1) clme.Rd:84: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  criteria.h:45:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  criteria.h:48:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/clusterCrit.Rcheck/00install.out’ for details.
checkRd: (-1) genRandomClust.Rd:228: Escaped LaTeX specials: \_
checkRd: (-1) genRandomClust.Rd:259: Escaped LaTeX specials: \_
checkRd: (-1) genRandomClust.Rd:327: Escaped LaTeX specials: \_
checkRd: (-1) plot1DProjection.Rd:95: Escaped LaTeX specials: \_ \_
checkRd: (-1) plot2DProjection.Rd:117: Escaped LaTeX specials: \_ \_
checkRd: (-1) simClustDesign.Rd:235: Escaped LaTeX specials: \_
checkRd: (-1) simClustDesign.Rd:268: Escaped LaTeX specials: \_
checkRd: (-1) simClustDesign.Rd:331: Escaped LaTeX specials: \_
Found the following files/directories:
  ‘clusterhap_reports’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘CRTSize’
checkRd: (-1) HINoV.Mod.rd:3: Escaped LaTeX specials: \&
checkRd: (-1) HINoV.Symbolic.rd:3: Escaped LaTeX specials: \&
checkRd: (-1) cluster.Gen.rd:14: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:18: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:29: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) cluster.Gen.rd:33: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:34: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:36: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:38: Escaped LaTeX specials: \_ \_
checkRd: (-1) cluster.Gen.rd:51: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:52: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:54: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:55: Escaped LaTeX specials: \_
checkRd: (-1) cluster.Gen.rd:62: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) comparing.Partitions.rd:12: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) dist.BC.rd:10: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) dist.GDM.rd:33: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) dist.SM.rd:10: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.C.rd:11: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.G2.rd:11: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.G3.rd:11: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.H.rd:16: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) index.S.rd:12: Escaped LaTeX specials: \$ \_ \_
checkRd: (-1) dtmvnom.Rd:30: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  optimal_assignment.c:47:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/clv.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Rwrapper.c:84:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Rwrapper.c:184:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cmfrec.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot.predict.crrQR.Rd:18: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crrQR.Rd:22: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crr.Rd:18: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crr.Rd:22: Escaped LaTeX specials: \#
Problems with news in ‘NEWS.md’:
No news entries found.
Running examples in ‘cmsafops-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hourmean
> ### Title: Determine hourly means
> ### Aliases: hourmean
> 
> ### ** Examples
> 
> ## Create an example NetCDF file with a similar structure as used by CM
> ## SAF. The file is created with the ncdf4 package.  Alternatively
> ## example data can be freely downloaded here: <https://wui.cmsaf.eu/>
> 
> library(ncdf4)
> 
> ## create some (non-realistic) example data
> 
> lon <- seq(5, 15, 0.5)
> lat <- seq(45, 55, 0.5)
> 
> time <- seq(ISOdate(2000, 1, 1), ISOdate(2000, 1, 2), "mins")
> origin <- as.Date("1983-01-01 00:00:00")
> time <- as.numeric(difftime(time, origin, units = "min"))
> data <- array(250:350, dim = c(21, 21, 1441))
> ## create example NetCDF
> 
> x <- ncdim_def(name = "lon", units = "degrees_east", vals = lon)
> y <- ncdim_def(name = "lat", units = "degrees_north", vals = lat)
> t <- ncdim_def(name = "time", units = "minutes since 1983-01-01 00:00:00",
+               vals = time, unlim = TRUE)
> var1 <- ncvar_def("SIS", "W m-2", list(x, y, t), -1, prec = "short")
> vars <- list(var1)
> ncnew <- nc_create(file.path(tempdir(),"CMSAF_example_file.nc"), vars)
> ncvar_put(ncnew, var1, data)
> ncatt_put(ncnew, "lon", "standard_name", "longitude", prec = "text")
> ncatt_put(ncnew, "lat", "standard_name", "latitude", prec = "text")
> nc_close(ncnew)
> 
> ## Determine the hourly means of the example CM SAF NetCDF file
> ## and write the output to a new file.
> hourmean(var = "SIS", infile = file.path(tempdir(),"CMSAF_example_file.nc"), 
+  outfile = file.path(tempdir(),"CMSAF_example_file_hourmean.nc"))
Error in hourx_wrapper(1, var, infile, outfile, nc34, overwrite, verbose,  : 
  The time steps must be available at least every hour. Please try daysum for diurnal aggregation. 
Calls: hourmean -> hourx_wrapper
Execution halted
Running ‘spelling.R’ [0s/1s]
  Comparing ‘spelling.Rout’ to ‘spelling.Rout.save’ ...6c6
< NULL
---
> All Done!
  Running ‘testthat.R’ [109s/169s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(cmsafops)
  > 
  > test_check("cmsafops")
  149016292920292920149016149016149016149028149016[ FAIL 3 | WARN 0 | SKIP 0 | PASS 9082 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_hourmean.R:8'): (code run outside of `test_that()`) ────────────
  Error in `hourx_wrapper(1, var, infile, outfile, nc34, overwrite, verbose, 
      nc = nc)`: The time steps must be available at least every hour. Please try daysum for diurnal aggregation. 
  Backtrace:
      ▆
   1. └─cmsafops::hourmean(...) at test_hourmean.R:8:0
   2.   └─cmsafops:::hourx_wrapper(...)
  ── Error ('test_hoursum.R:8'): (code run outside of `test_that()`) ─────────────
  Error in `hourx_wrapper(2, var, infile, outfile, nc34, overwrite, verbose, 
      nc = nc)`: The time steps must be available at least every hour. Please try daysum for diurnal aggregation. 
  Backtrace:
      ▆
   1. └─cmsafops::hoursum(...) at test_hoursum.R:8:0
   2.   └─cmsafops:::hourx_wrapper(...)
  ── Error ('test_mondaymean.R:8'): (code run outside of `test_that()`) ──────────
  Error in `mondaymean("SIS", file.path(data_dir, "ex_mondaymean.nc"), file_out)`: The time steps must be available every 15min (at least 12 days per month), 30min (at least 6 days per month) or 1h (at least 3 days per month). One or more time steps do not meet the requirements. The result of these time steps is NA. 
  Backtrace:
      ▆
   1. └─cmsafops::mondaymean(...) at test_mondaymean.R:8:0
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 9082 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘tobit1’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) drqssbc.Rd:83: Escaped LaTeX specials: \&
checkRd: (-1) qbsks.Rd:81: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘rkward’
Package which this enhances but not available for checking: ‘rkward’
Package suggested but not available for checking: ‘userfriendlyscience’
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘foo.R’ ‘foo.html’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  utils.h:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  collections.c:11:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utils.c:5:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utils.c:18:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/collections.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘cometExactTest_plot.pdf’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  cmark/cmark-gfm.h:114:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cmark/cmark-gfm.h:120:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  extensions.c:5:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cmark/cmark.c:41:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  cmark/arena.c:101:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/commonmark.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘CAM’
checkRd: (-1) compareGroups-package.Rd:52: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
checkRd: (-1) HouseholdExp.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) HouseholdExp.Rd:27: Escaped LaTeX specials: \$
checkRd: (-1) mix2compositions.Rd:28: Escaped LaTeX specials: \$
checkRd: (-1) mixRead.Rd:30: Escaped LaTeX specials: \$ \$
checkRd: (-1) mixRead.Rd:31: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Deprecation
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) babies.Rd:35: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘design_names.csv’ ‘design_numbers.csv’
  ‘encoded_orthogonal_factorial_design.csv’
  ‘orthogonal_factorial_design.csv’
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'conosPanel', 'p2data'
checkRd: (-1) plotMCC.Rd:19: Escaped LaTeX specials: \_
GNU make is a SystemRequirements.
Found the following significant warnings:
  brentmin.c:237:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ContaminatedMixt.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'cec2005benchmark', 'cec2013'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) poss_local.Rd:21: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
checkRd: (-1) BrownBigrams.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BrownLOBPassives.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BrownPassives.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BrownStats.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) KrennPPV.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) KrennPPV.Rd:74: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) sgt.Rd:16: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) egde.Rd:26: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) cosmoFns-package.Rd:34: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  bb.c:719:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ibb.c:78:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/countdata.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘covfefe_inauguration.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  bcplm.c:84:22: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cplm.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Non-visible changes:
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  crf/src/crfsuite_internal.h:169:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  crf/src/params.h:36:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  crf/src/crf1d_encode.c:1031:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  crf/src/crf1d_feature.c:77:22: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  crf/src/quark.h:39:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  crf/src/params.c:252:20: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  crf/src/quark.c:72:10: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/crfsuite.Rcheck/00install.out’ for details.
BugReports field is not a suitable URL but contains an email address:
   use the Contact field instead
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following HTML validation problems:
download_terraclimate.html:20:1 (download_terraclimate.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
download_terraclimate.html:20:1 (download_terraclimate.Rd:6): Warning: <img> proprietary attribute "logo"
eto_calibration.html:20:1 (eto_calibration.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
eto_calibration.html:20:1 (eto_calibration.Rd:6): Warning: <img> proprietary attribute "logo"
loadROI.html:20:1 (loadROI.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
loadROI.html:20:1 (loadROI.Rd:6): Warning: <img> proprietary attribute "logo"
monthly_stack.html:20:1 (monthly_stack.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
monthly_stack.html:20:1 (monthly_stack.Rd:6): Warning: <img> proprietary attribute "logo"
plot_AWC.html:20:1 (plot_AWC.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
plot_AWC.html:20:1 (plot_AWC.Rd:6): Warning: <img> proprietary attribute "logo"
ppt_calibration.html:20:1 (ppt_calibration.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
ppt_calibration.html:20:1 (ppt_calibration.Rd:6): Warning: <img> proprietary attribute "logo"
see_brazil_biomes.html:20:1 (see_brazil_biomes.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
see_brazil_biomes.html:20:1 (see_brazil_biomes.Rd:6): Warning: <img> proprietary attribute "logo"
see_brazil_states.html:20:1 (see_brazil_states.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
see_brazil_states.html:20:1 (see_brazil_states.Rd:6): Warning: <img> proprietary attribute "logo"
waterDemand.html:20:1 (waterDemand.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
waterDemand.html:20:1 (waterDemand.Rd:6): Warning: <img> proprietary attribute "logo"
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘crop.eps’ ‘crop.pdf’ ‘crop.png’ ‘crop.ps’
'LazyData' is specified without a 'data' directory
Found the following HTML validation problems:
ccrop_zoning.html:20:1 (ccrop_zoning.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
ccrop_zoning.html:20:1 (ccrop_zoning.Rd:6): Warning: <img> proprietary attribute "logo"
download_terraclimate.html:20:1 (download_terraclimate.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
download_terraclimate.html:20:1 (download_terraclimate.Rd:6): Warning: <img> proprietary attribute "logo"
loadROI.html:20:1 (loadROI.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
loadROI.html:20:1 (loadROI.Rd:6): Warning: <img> proprietary attribute "logo"
plot_ccrop_zoning.html:20:1 (plot_ccrop_zoning.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
plot_ccrop_zoning.html:20:1 (plot_ccrop_zoning.Rd:6): Warning: <img> proprietary attribute "logo"
see_brazil_biomes.html:20:1 (see_brazil_biomes.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
see_brazil_biomes.html:20:1 (see_brazil_biomes.Rd:6): Warning: <img> proprietary attribute "logo"
see_brazil_states.html:20:1 (see_brazil_states.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
see_brazil_states.html:20:1 (see_brazil_states.Rd:6): Warning: <img> proprietary attribute "logo"
tmax_calibration.html:20:1 (tmax_calibration.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
tmax_calibration.html:20:1 (tmax_calibration.Rd:6): Warning: <img> proprietary attribute "logo"
tmean.html:20:1 (tmean.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
tmean.html:20:1 (tmean.Rd:6): Warning: <img> proprietary attribute "logo"
tmean_monthly_stack.html:20:1 (tmean_monthly_stack.Rd:6): Warning: <img> attribute "width" has invalid value "auto"
tmean_monthly_stack.html:20:1 (tmean_monthly_stack.Rd:6): Warning: <img> proprietary attribute "logo"
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Major features
    Minor features
checkRd: (-1) handmovement.Rd:9: Escaped LaTeX specials: \_ \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  structs.h:44:29: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  vector.c:125:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ctl.Rcheck/00install.out’ for details.
Found the following significant warnings:
  init.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ctmcd.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Hello.csv’
Found the following significant warnings:
  ../inst/include/cuba.h:75:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ../inst/include/cuba.h:76:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cubature.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  redefine.h:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  redefine.h:27:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  getdata.c:44:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  hash.h:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rcubist.c:40:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  redefine.c:46:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  redefine.c:191:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  top.c:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Cubist.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
File ‘curl/libs/curl.so’:
  Found non-API call to R: ‘R_new_custom_connection’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Adjusted_p_values.pdf’ ‘Effect_Size_Curves.pdf’
  ‘Mean_Difference_Curves.pdf’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Misc
checkRd: (-1) abs_d_ppv_npv.Rd:27: Escaped LaTeX specials: \_ \_ \_
Package which this enhances but not available for checking: ‘RGtk2’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [112s/172s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(cvms)
  > 
  > test_check("cvms")
  [ FAIL 1 | WARN 0 | SKIP 70 | PASS 3622 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • Fails in check - IMPROVE THESE TESTS (1)
  • On CRAN (58)
  • Skipping check for CRAN release due to r_hub failure (1)
  • Skipping parallel tests (3)
  • empty test (1)
  • keras and tensorflow take too long and have too many dependencies (1)
  • mac and ubuntu give different warnings (4)
  • tidymodels have too many dependencies (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_cross_validate.R:3481'): varying number of folds in repeated cv with cross_validate() ──
  CV$Coefficients not equal to list(...).
  Component 1: Attributes: < Names: 12 string mismatches >
  Component 1: Attributes: < Length mismatch: comparison on first 36 components >
  Component 1: Attributes: < Component 26: Modes: character, logical >
  Component 1: Attributes: < Component 26: Lengths: 2, 1 >
  Component 1: Attributes: < Component 26: names for target but not for current >
  Component 1: Attributes: < Component 26: target is character, current is logical >
  Component 1: Attributes: < Component 27: Modes: logical, numeric >
  Component 1: Attributes: < Component 27: target is logical, current is numeric >
  Component 1: Attributes: < Component 28: Modes: numeric, logical >
  ...
  
  [ FAIL 1 | WARN 0 | SKIP 70 | PASS 3622 ]
  Error: Test failures
  Execution halted
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘lattice’ ‘robustbase’
A package should be listed in only one of these fields.
Packages which this enhances but not available for checking:
  'gurobi', 'rcbc'
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    CVXR pre-0.94-4
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) dspg.Rd:29: Escaped LaTeX specials: \^ \^
checkRd: (-1) dspgd2015.Rd:31: Escaped LaTeX specials: \^ \^
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘dash’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘dash’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘dash’
Package suggested but not available for checking: ‘dash’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘my new data set.rds’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘stubthat’
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Datastream DWE - now decommissioned by Refinitiv
    CRAN
Found the following significant warnings:
  init.c:29:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:30:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:31:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:33:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:34:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:36:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:37:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/datastructures.Rcheck/00install.out’ for details.
Found the following significant warnings:
  char_date.c:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  char_date.c:87:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/date.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘SASxport’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ../include/external/random.h:53:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ../include/external/random.h:54:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  randomBase.c:363:21: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  randomBase.c:381:26: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ../include/misc/adaptiveRadixTree.h:54:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  adaptiveRadixTree.c:195:7: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  simd.c:53:24: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dbarts.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘dblog’
Found the following significant warnings:
  d011ch.c:17:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:41:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:42:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:44:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:45:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:352:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:427:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:520:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:531:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:686:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  d011ch.c:698:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ma.c:7:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  urnew010.c:17:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  urnew010.c:36:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  urnew010.c:37:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wur.c:23:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dblcens.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Changes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  difeq.h:65:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  difeq.c:123:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dopri.h:208:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dopri.c:245:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dde.Rcheck/00install.out’ for details.
Found the following significant warnings:
  DDHFm.c:101:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  DDHFm.c:122:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  DDHFm.c:199:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/DDHFm.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  globals.h:139:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deBif.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘res.pdf’ ‘res1.jpg’
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Changes from previous package DecompHoriuchi
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘smd_table.docx’
checkRd: (-1) lifetable.Rd:15: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
checkRd: (-1) scramb.Rd:44: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Running examples in ‘dendRoAnalyst-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: daily.data
> ### Title: Calculation of daily statistics for dendrometer data
> ### Aliases: daily.data
> 
> ### ** Examples
> 
> library(dendRoAnalyst)
> data(nepa17)
> daily_stats<-daily.data(df=nepa17, TreeNum=1)
Error in daily.data(df = nepa17, TreeNum = 1) : 
  Date not in the right format
Execution halted
checkRd: (-1) DendSer.Rd:50: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘Rdonlp2’
checkRd: (-1) discrimination.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) fitdmm.Rd:59: Escaped LaTeX specials: \$
Package suggested but not available for checking: ‘Rdonlp2’
Found the following significant warnings:
  deque.h:73:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  constructor.c:43:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  deque.c:31:10: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dequer_native.c:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dequer.Rcheck/00install.out’ for details.
checkRd: (-1) barriers.Rd:127: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
checkRd: (-1) geom_axis.Rd:10: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘RDCOMClient’
Found the following significant warnings:
  ranksort.c:3:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ranksort.c:49:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ranksort.c:76:14: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/DescTools.Rcheck/00install.out’ for details.
Package which this enhances but not available for checking: ‘gurobi’
Found the following significant warnings:
  deSolve.h:95:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  R_init_deSolve.c:25:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  R_init_deSolve.c:60:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  deSolve_utils.c:76:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ex_CCL4model.c:51:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ex_CCL4model.c:74:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deSolve.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  DetSel_init.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  GetData.c:33:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/DetSel.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  void_dev.c:103:10: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  void_dev.c:182:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  void_dev.c:197:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/devoid.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  arms.h:50:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dfcomb.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) phihat.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) anova.dglm.Rd:41: Escaped LaTeX specials: \&
Package which this enhances but not available for checking: ‘BayesianTools’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  crc32.c:161:23: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/digest.Rcheck/00install.out’ for details.
Running examples in ‘digiRhythm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: resample_dgm
> ### Title: Change the sampling of a digiRhythm friendly dataset
> ### Aliases: resample_dgm
> 
> ### ** Examples
> 
> data("df516b_2", package = "digiRhythm")
> df <- df516b_2
> df <- remove_activity_outliers(df)
> new_sampling <- 30
> new_dgm <- resample_dgm(df, new_sampling)
Error in if ((new_sampling%%original_sampling) != 0) { : 
  missing value where TRUE/FALSE needed
Calls: resample_dgm
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Actgram_diurnality_avg_activity.Rmd’ using rmarkdown
Quitting from lines 30-36 (Actgram_diurnality_avg_activity.Rmd) 
Error: processing vignette ‘Actgram_diurnality_avg_activity.Rmd’ failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘Actgram_diurnality_avg_activity.Rmd’

--- re-building ‘DFC_and_HP_and_changing_plots.Rmd’ using rmarkdown
Quitting from lines 20-26 (DFC_and_HP_and_changing_plots.Rmd) 
Error: processing vignette ‘DFC_and_HP_and_changing_plots.Rmd’ failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘DFC_and_HP_and_changing_plots.Rmd’

--- re-building ‘Loading_and_preprocessing_data_in_DigiRhythm.Rmd’ using rmarkdown
trying URL ‘https://raw.githubusercontent.com/nasserdr/digiRhythm_sample_datasets/main/516b_2.csv’
Content type 'text/plain; charset=utf-8' length 2655404 bytes (2.5 MB)
==================================================
downloaded 2.5 MB

Quitting from lines 118-120 (Loading_and_preprocessing_data_in_DigiRhythm.Rmd) 
Error: processing vignette ‘Loading_and_preprocessing_data_in_DigiRhythm.Rmd’ failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘Loading_and_preprocessing_data_in_DigiRhythm.Rmd’

SUMMARY: processing the following files failed:
  ‘Actgram_diurnality_avg_activity.Rmd’
  ‘DFC_and_HP_and_changing_plots.Rmd’
  ‘Loading_and_preprocessing_data_in_DigiRhythm.Rmd’

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [7s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(dint)
  > 
  > test_check("dint")
  [ FAIL 2 | WARN 0 | SKIP 2 | PASS 1258 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • empty test (1)
  • not yet (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_date_xx.R:39'): date_xx coercion to POSIXt works ─────────────
  as.POSIXlt(make_date_xx(2012)) not identical to as.POSIXlt(as.Date("2012-01-01")).
  Attributes: < Component "tzone": 1 string mismatch >
  ── Failure ('test_date_xx.R:40'): date_xx coercion to POSIXt works ─────────────
  as.POSIXct(make_date_xx(2012)) not identical to as.POSIXct(as.Date("2012-01-01")).
  Attributes: < Component "tzone": 1 string mismatch >
  
  [ FAIL 2 | WARN 0 | SKIP 2 | PASS 1258 ]
  Error: Test failures
  Execution halted
Found the following significant warnings:
  dipm.c:3577:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dipm.c:3654:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dipm.c:3998:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dipm.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘rrelaxiv’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) disaggregate.Rd:56: Escaped LaTeX specials: \&
Package suggested but not available for checking: ‘INLA’
GNU make is a SystemRequirements.
checkRd: (-1) sammy.Rd:51: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘discreteMTP’
Unknown package ‘discreteMTP’ in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) dataCensoring.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) dataLong.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) dataLongCompRisksTimeDep.Rd:130: Escaped LaTeX specials: \&
checkRd: (-1) dataLongMultiSpell.Rd:123: Escaped LaTeX specials: \&
checkRd: (-1) dataLongTimeDep.Rd:96: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) booter.Rd:68: Escaped LaTeX specials: \&
checkRd: (-1) ci.booted.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) pbooter.Rd:57: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘csim’ ‘xyz’ ‘xyz.sav’ ‘xyz.sav.comment’
Found the following files/directories:
  ‘csim.mean’ ‘csim.mean.comment’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rfftw.h:34:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rfftw.c:149:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  util.c:231:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  zzz.h:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  zzz.h:44:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/diversitree.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘BOLTSSIRR’
Packages suggested but not available for checking: 'sendplot', 'HWxtest'
checkRd: (-1) fastDivPart.Rd:13: Escaped LaTeX specials: \_
checkRd: (-1) inCalc.Rd:26: Escaped LaTeX specials: \_
checkRd: (-1) inCalc.Rd:13: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  arms-R.c:83:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  arms-R.c:811:30: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 4 has type ‘POINT *’ {aka ‘struct point *’} [-Wformat=]
  arms-R.c:821:26: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘POINT *’ {aka ‘struct point *’} [-Wformat=]
  arms-R.c:821:38: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 4 has type ‘struct point *’ [-Wformat=]
  arms-R.c:821:51: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 5 has type ‘struct point *’ [-Wformat=]
  arms-R.c:832:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:13:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:14:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:16:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:18:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:19:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:53:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dlm.c:54:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dlm.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Changes to previous versions
    Minor changes
    Fixes
    Previous Versions
checkRd: (-1) dlsem.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) unirootTest.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) unirootTest.Rd:20: Escaped LaTeX specials: \&
checkRd: (-1) unirootTest.Rd:26: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) dnr.Rd:12: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) block.catlg.Rd:61: Escaped LaTeX specials: \^ \^
Package which this enhances but not available for checking: ‘gurobi’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following calls to attach():
File ‘doParallel/R/doParallel.R’:
  attach(exportEnv)
See section ‘Good practice’ in ‘?attach’.
Found the following significant warnings:
  alive.c:200:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  alive.c:277:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/doRedis.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    New features
'LazyData' is specified without a 'data' directory
Found the following calls to attach():
File ‘doSNOW/R/doSNOW.R’:
  attach(exportEnv)
See section ‘Good practice’ in ‘?attach’.
Package suggested but not available for checking: ‘OpenMPController’
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘myfile.ps’ ‘myfile.svg’
Unknown package ‘broomExtra’ in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  lr.c:27:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dparser.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) confint.dr4pl.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) gof-dr4pl.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) vcov.dr4pl.Rd:61: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘drawBox.pdf’ ‘drawCircle.pdf’ ‘drawCurve.pdf’ ‘drawLine.pdf’
  ‘drawPoint.pdf’ ‘drawSettingsExample.pdf’ ‘drawText.pdf’ ‘export.pdf’
'LazyData' is specified without a 'data' directory
checkRd: (-1) EDcomp.Rd:88: Escaped LaTeX specials: \&
checkRd: (-1) LL.4.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) W4.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) algae.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) anova.drc.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) deguelin.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) gompertz.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) hatvalues.drc.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) llogistic.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) modelFit.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) weibull1.Rd:67: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
Package suggested but not available for checking: ‘dsBaseClient’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Running examples in ‘dtwSat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotCostMatrix
> ### Title: Plotting paths
> ### Aliases: plotCostMatrix
> 
> ### ** Examples
> 
> log_fun = logisticWeight(-0.1, 100)
> ts = twdtwTimeSeries(MOD13Q1.ts.list)
> patt = twdtwTimeSeries(MOD13Q1.patterns.list)
> mat1 = twdtwApply(x=ts, y=patt, weight.fun=log_fun, keep=TRUE)
> 
> plotCostMatrix(mat1, matrix.name="costMatrix")
Error in data.frame(y.breaks, y.labels = names(y.labels)) : 
  arguments imply differing number of rows: 5, 6
Calls: plotCostMatrix -> do.call -> lapply -> FUN -> data.frame
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  nwout.c:49:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/DynamicGP.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following significant warnings:
  init.c:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynaTree.Rcheck/00install.out’ for details.
checkRd: (-1) dynaTree.Rd:265: Escaped LaTeX specials: \&
checkRd: (-1) dynaTree.Rd:270: Escaped LaTeX specials: \&
checkRd: (-1) relevance.dynaTree.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) sens.dynaTree.Rd:140: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘lle’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:40: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  adaodesolver.c:197:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  adaodesolver.c:407:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  adaodesolver.h:72:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  adaodesolver.h:106:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynr.Rcheck/00install.out’ for details.
Found the following significant warnings:
  arms.c:105:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  arms.c:902:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynsurv.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    20181118
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘example_table1.csv’ ‘example_table1.txt’ ‘example_table2.csv’
  ‘example_table2.txt’ ‘example_table3.csv’ ‘example_table3.txt’
  ‘table1.csv’ ‘table2.csv’ ‘table2.txt’ ‘table3.txt’ ‘table4.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘gurobi’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    breaking changes
    major changes
    minor changes
    Internal
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  include/ecos_bb.h:161:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ecos_bb/ecos_bb_preproc.c:298:14: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ecos/include/ecos_bb.h:161:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ECOSolveR.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    TODO:
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘eval_test_LG_ROC.pdf’ ‘test.pdf’
Package suggested but not available for checking: ‘eggCountsExtra’
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Running examples in ‘EHR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: run_Build_PK_Oral
> ### Title: Build-PK-Oral Module
> ### Aliases: run_Build_PK_Oral
> 
> ### ** Examples
> 
> ## Data Generating Function
> mkdat <- function() {
+   npat <- 3
+   visits <- floor(runif(npat, min=2, max=6))
+   id <- rep(1:npat, visits)
+   dt_samp <- as.Date(sort(sample(700, sum(visits))), origin = '2019-01-01')
+   tm_samp <- as.POSIXct(paste(dt_samp, '10:00:00'), tz = 'UTC')
+   dt <- tm_samp + rnorm(sum(visits), 0, 1*60*60)
+   dose_morn <- sample(c(2.5,5,7.5,10), sum(visits), replace = TRUE)
+   conc <- round(rnorm(sum(visits), 1.5*dose_morn, 1),1)
+   ld <- dt - sample(10:16, sum(visits), replace = TRUE) * 3600
+   ld[rnorm(sum(visits)) < .3] <- NA
+   age <- rep(sample(40:75, npat), visits)
+   gender <- rep(sample(0:1, npat, replace=TRUE), visits)
+   weight <- rep(round(rnorm(npat, 180, 20)),visits)
+   hgb <- rep(rnorm(npat, 10, 2), visits)
+   data.frame(id, dt, dose_morn, conc, ld, age, gender, weight, hgb)
+ }
> 
> # Make raw data
> set.seed(30)
> dat <- mkdat()
> 
> #Process data without last-dose times
> run_Build_PK_Oral(x = dat,
+                   idCol = "id",
+                   dtCol = "dt",
+                   doseCol = "dose_morn",
+                   concCol = "conc",
+                   ldCol = NULL,
+                   first_interval_hours = 336,
+                   imputeClosest = NULL)
Error in as.character.POSIXt(x[, dtCol], "%Y-%m-%d %H:%M:%S") : 
  'digits' must be numeric, integer valued
Calls: run_Build_PK_Oral -> as.character -> as.character.POSIXt
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘ehr_vignette_01_mxr.Rmd’ using rmarkdown
--- finished re-building ‘ehr_vignette_01_mxr.Rmd’

--- re-building ‘ehr_vignette_02_str.Rmd’ using rmarkdown
--- finished re-building ‘ehr_vignette_02_str.Rmd’

--- re-building ‘ehr_vignette_03_DoseBuilding.Rmd’ using rmarkdown
--- finished re-building ‘ehr_vignette_03_DoseBuilding.Rmd’

--- re-building ‘ehr_vignette_04_Build_PK_Oral.Rmd’ using rmarkdown
Quitting from lines 85-95 (ehr_vignette_04_Build_PK_Oral.Rmd) 
Error: processing vignette ‘ehr_vignette_04_Build_PK_Oral.Rmd’ failed with diagnostics:
'digits' must be numeric, integer valued
--- failed re-building ‘ehr_vignette_04_Build_PK_Oral.Rmd’

SUMMARY: processing the following file failed:
  ‘ehr_vignette_04_Build_PK_Oral.Rmd’

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  eicm.h:70:19: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/eicm.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) AuditErrors.Rd:40: Escaped LaTeX specials: \_
checkRd: (-1) compute.audit.errors.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) compute.stark.t.Rd:35: Escaped LaTeX specials: \_ \_
checkRd: (-1) find.q.Rd:44: Escaped LaTeX specials: \_
checkRd: (-1) find.q.Rd:56: Escaped LaTeX specials: \_
checkRd: (-1) stark.test.Rd:50: Escaped LaTeX specials: \$
checkRd: (-1) stark.test.Rd:101: Escaped LaTeX specials: \$ \$
checkRd: (-1) tri.audit.sim.Rd:47: Escaped LaTeX specials: \_
checkRd: (-1) tri.calc.sample.Rd:34: Escaped LaTeX specials: \_
checkRd: (-1) tri.sample.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:36: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:49: Escaped LaTeX specials: \$
checkRd: (-1) weight.function.Rd:16: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  zeroin.c:54:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/EL.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  emd-rubner.c:143:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  emd-rubner.c:153:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  emd-rubner.c:640:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  emd-rubner.c:810:20: warning: ‘minI’ is used uninitialized [-Wuninitialized]
  emd-rubner.c:810:26: warning: ‘minJ’ is used uninitialized [-Wuninitialized]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/emdist.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) freudenstein_roth_func.Rd:29: Escaped LaTeX specials: \&
Package suggested but not available for checking: ‘osmar’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  utilities.h:7:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utilities.c:14:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/emoa.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) encode.character.Rd:22: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘file.path(temp_dir, gp2.csv)’
'LazyData' is specified without a 'data' directory
checkRd: (-1) check_several.Rd:34: Escaped LaTeX specials: \#
checkRd: (-1) check_several.Rd:35: Escaped LaTeX specials: \#
Found the following files/directories:
  ‘Environmental variables.csv’ ‘Inf.txt’ ‘List of species.csv’ ‘Mean
  overlap among taxa.csv’ ‘Overlap among taxa.csv’ ‘Pointsize.dat’
  ‘Polar coordinates.csv’
'LazyData' is specified without a 'data' directory
checkRd: (-1) calibrate.Rd:151: Escaped LaTeX specials: \&
checkRd: (-1) cdfCompareCensored.Rd:299: Escaped LaTeX specials: \&
checkRd: (-1) detectionLimitCalibrate.Rd:149: Escaped LaTeX specials: \&
checkRd: (-1) ecdfPlotCensored.Rd:169: Escaped LaTeX specials: \&
checkRd: (-1) egammaAltCensored.Rd:344: Escaped LaTeX specials: \&
checkRd: (-1) egammaCensored.Rd:340: Escaped LaTeX specials: \&
checkRd: (-1) elnormAltCensored.Rd:694: Escaped LaTeX specials: \&
checkRd: (-1) elnormCensored.Rd:270: Escaped LaTeX specials: \&
checkRd: (-1) enormCensored.Rd:852: Escaped LaTeX specials: \&
checkRd: (-1) enparCensored.Rd:343: Escaped LaTeX specials: \&
checkRd: (-1) enparCensored.Rd:358: Escaped LaTeX specials: \&
checkRd: (-1) epoisCensored.Rd:354: Escaped LaTeX specials: \&
checkRd: (-1) ppointsCensored.Rd:406: Escaped LaTeX specials: \&
checkRd: (-1) predIntGammaSimultaneous.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) predIntGammaSimultaneous.Rd:171: Escaped LaTeX specials: \&
checkRd: (-1) predIntLnormSimultaneous.Rd:136: Escaped LaTeX specials: \&
checkRd: (-1) predIntLnormSimultaneous.Rd:137: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneous.Rd:204: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneous.Rd:205: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneousK.Rd:277: Escaped LaTeX specials: \&
checkRd: (-1) predIntNormSimultaneousK.Rd:278: Escaped LaTeX specials: \&
checkRd: (-1) qqPlotCensored.Rd:261: Escaped LaTeX specials: \&
checkRd: (-1) twoSampleLinearRankTest.Rd:276: Escaped LaTeX specials: \&
checkRd: (-1) twoSampleLinearRankTestCensored.Rd:324: Escaped LaTeX specials: \&
checkRd: (-1) twoSampleLinearRankTestCensored.Rd:331: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Net1-fromR.inp’
GNU make is a SystemRequirements.
checkRd: (-1) risk.display.rd:98: Escaped LaTeX specials: \$
Package suggested but not available for checking: ‘epidict’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_state.h:33:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:380:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:381:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:382:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_wtstate.h:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:585:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:586:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:587:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/EpiModel.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘EpiSoon’
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘episcan_1geno_cc.txt’ ‘episcan_1geno_quant.txt’
  ‘episcan_2geno_cc.txt’ ‘episcan_2geno_quant.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘taskscheduleR’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_state.h:33:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:380:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:381:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:382:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_wtstate.h:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:585:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:586:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:587:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ergm.count.Rcheck/00install.out’ for details.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_state.h:33:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:380:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:381:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:382:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_wtstate.h:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:585:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:586:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:587:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ergm.ego.Rcheck/00install.out’ for details.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_state.h:33:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:380:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:381:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:382:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_wtstate.h:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:585:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:586:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ergm/include/ergm_stubs.c:587:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ergm.rank.Rcheck/00install.out’ for details.
Found the following significant warnings:
  ../inst/include/ergm_state.h:33:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  MPLE.c:28:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ergm_omp.c:36:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ergm_state.c:107:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ../inst/include/ergm_wtstate.h:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ergm_wtstate.c:107:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:34:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:35:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:36:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:40:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ergm.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) aic.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) aic.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:64: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) calculateGLR.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) Snoring.Rd:21: Escaped LaTeX specials: \&
Found the following files/directories:
  ‘sample .nwk’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘ExactData’
checkRd: (-1) exams2sakai.Rd:152: Escaped LaTeX specials: \&
checkRd: (-1) exams2blackboard.Rd:152: Escaped LaTeX specials: \&
checkRd: (-1) exams2qti12.Rd:186: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cec2013’
checkRd: (-1) ccF.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:29: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  expint.c:536:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  expint.c:604:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/expint.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Running examples in ‘expss-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: net
> ### Title: Add subtotal to a set of categories
> ### Aliases: net subtotal tab_net_cells tab_net_cols tab_net_rows
> ###   tab_subtotal_cells tab_subtotal_cols tab_subtotal_rows hide unhide
> 
> ### ** Examples
> 
> ol = c(1:7, 99)
> var_lab(ol) = "Liking"
> val_lab(ol)  = num_lab("
+                      1 Disgusting
+                      2 Very Poor
+                      3 Poor
+                      4 So-so
+                      5 Good
+                      6 Very good
+                      7 Excellent
+                      99 Hard to say
+                      ")
>                      
> cro(subtotal(ol, BOTTOM = 1:3, TOP = 6:7, position = "top"))
Error in set_val_lab.default(x, value, add = FALSE) : 
  'set_val_lab' - duplicated values in labels: 1 1 2 2 3 3 4 5 6 6 7 7 99
Calls: cro ... net.default -> val_lab<- -> set_val_lab -> set_val_lab.default
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) sp500.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) outlierPlot.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) outlierPlot.Rd:32: Escaped LaTeX specials: \$
Package suggested but not available for checking: ‘exuberdata’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Functions and objects (details)
checkRd: (-1) codePasses.Rd:64: Escaped LaTeX specials: \#
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Bogota.tex’ ‘DogBreeds1.tex’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    minor changes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  chli.c:5:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fame.Rcheck/00install.out’ for details.
File ‘fame/R/windows/zzz.R’:
  .onLoad calls:
    packageStartupMessage("FAME environment variable not set; assuming ",     defaultDir)
    packageStartupMessage("FAME directory ", fameDir, " not found.\n",     "If you have FAME installed, specify it's location ", "via the FAME environment variable.\n",     "Otherwise, this package is pretty useless.\n")

See section ‘Good practice’ in ‘?.onAttach’.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ezprof.c:16:10: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fanc.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘OpenML’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  lu.h:44:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lu.c:828:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fastclime.Rcheck/00install.out’ for details.
Found the following files/directories:
  ‘default5.eps’
Package suggested but not available for checking: ‘crrp’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘coxKM’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fastmap.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File ‘fastmatch/libs/fastmatch.so’:
  Found non-API call to R: ‘match5’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) FastPCS-package.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) FastPCS.Rd:104: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) Scent.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) Traffic.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) Lemons.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) Lemons.Rd:5: Escaped LaTeX specials: \&
Found the following significant warnings:
  Rconnection.cc:282:52: warning: format ‘%p’ expects argument of type ‘void*’, but argument 3 has type ‘Rexp*’ [-Wformat=]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FastRWeb.Rcheck/00install.out’ for details.
.run: no visible binding for global variable ‘init’
.run: no visible global function definition for ‘init’
.run: no visible binding for global variable ‘run’
Undefined global functions or variables:
  init run
Note: information on .o files is not available
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘NNLM’
GNU make is a SystemRequirements.
Found the following significant warnings:
  gld.c:439:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fBasics.Rcheck/00install.out’ for details.
Found the following significant warnings:
  fbati_init.c:35:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  fbati_init.c:36:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  fbati_init.c:37:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  fbati_init.c:39:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  fbati_init.c:50:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  fbati_init.c:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  fbati_init.c:52:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  fbati_init.c:53:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fbati.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘test2delete.txt’ ‘test2delete2_values.txt’ ‘test2delete_values.txt’
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘.Rprofile’
Unexported objects imported by ‘:::’ calls:
  ‘fdapace:::GCVLwls1D1’ ‘fdapace:::GetSmoothedMeanCurve’
  ‘fdapace:::HandleNumericsAndNAN’ ‘fdapace:::interp2lin’
  See the note in ?`:::` about the use of this operator.
GNU make is a SystemRequirements.
checkRd: (-1) summary.fdata.comp.Rd:44: Escaped LaTeX specials: \&
Found the following math rendering problems:
fregre.plm.Rd:86-87: Undefined control sequence: \emph in y =\emph{r(X)}+\sum_{j=...
metric.kl.Rd:45-46: Undefined control sequence: \- in \left|f_i(t)\-g_i(t) \right|\...
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘vert.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘treesAll.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) morse.Rd:40: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:23: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) regMin.Rd:24: Escaped LaTeX specials: \#
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    New Stuff
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fermicatsR.Rd:31: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ff.h:34:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  r_ff.h:62:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  r_ff.h:63:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  r_ff.h:64:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  r_ff.c:289:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  r_ff.c:298:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  r_ff.c:309:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ff.Rcheck/00install.out’ for details.
checkRd: (-1) dimnames.ff.rd:18: Escaped LaTeX specials: \_
checkRd: (-1) ff.rd:120: Escaped LaTeX specials: \_
checkRd: (-1) names.ff.rd:22: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  f2c.h:185:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:186:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:187:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:188:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:189:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:190:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:191:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:192:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:193:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:194:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  f2c.h:195:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FGSG.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘MicrobeDS’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘AH_genepop.txt’ ‘AH_popname.txt’ ‘JSM_MS_freq.txt’
  ‘JSM_MS_genepop.txt’ ‘JSM_genepop_clipped_both.txt’
  ‘JSM_genepop_clipped_maf.txt’ ‘JSM_genepop_clipped_name.txt’
  ‘JSM_mtDNA_freq.txt’ ‘JSM_popname.txt’ ‘result_DJ.csv’
  ‘result_EBDJ.csv’ ‘result_EBFST.csv’ ‘result_EBFST_mtDNA.csv’
  ‘result_EBGstH.csv’ ‘result_GstH.csv’ ‘result_GstN.csv’
  ‘result_GstNC.csv’ ‘result_thetaWCpair.csv’
checkRd: (-1) bitspec.Rd:8: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fitmixEM.Rd:51: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'benchden', 'reliaR', 'STAR'
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘fivethirtyeightdata’
Package unavailable to check Rd xrefs: ‘fivethirtyeightdata’
Error(s) in re-building vignettes:
  ...
--- re-building ‘spot-rate-curve-indexing.Rmd’ using rmarkdown
Quitting from lines 134-135 (spot-rate-curve-indexing.Rmd) 
Error: processing vignette ‘spot-rate-curve-indexing.Rmd’ failed with diagnostics:
invalid class "SpotRateCurve" object: FALSE
--- failed re-building ‘spot-rate-curve-indexing.Rmd’

--- re-building ‘spot-rate-curve-interpolation.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:fixedincome':

    first, last

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

--- finished re-building ‘spot-rate-curve-interpolation.Rmd’

--- re-building ‘spot-rate-curve-plotting.Rmd’ using rmarkdown
Quitting from lines 83-86 (spot-rate-curve-plotting.Rmd) 
Error: processing vignette ‘spot-rate-curve-plotting.Rmd’ failed with diagnostics:
‘to’ must be a finite number
--- failed re-building ‘spot-rate-curve-plotting.Rmd’

SUMMARY: processing the following files failed:
  ‘spot-rate-curve-indexing.Rmd’ ‘spot-rate-curve-plotting.Rmd’

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
checkRd: (-1) etable.Rd:494: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) fk_regression.Rd:32: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) flashClust.Rd:92: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) cclust.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) randIndex.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) vacmot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) vacmot.Rd:28: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  flexiblas_api_standalone.c:64:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  flexiblas_api_standalone.c:86:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  flexiblas_api_standalone.c:452:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:7:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrapper.c:25:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrapper.c:34:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrapper.c:47:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrapper.c:58:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrapper.c:74:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrapper.c:132:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/flexiblas.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  float_native.c:40:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  float_native.c:41:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  float_native.c:53:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  machine.c:7:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  NA.c:20:21: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  NA.c:76:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  NA.c:88:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/float.Rcheck/00install.out’ for details.
Malformed Description field: should contain one or more complete sentences.
GNU make is a SystemRequirements.
Found the following files/directories:
  ‘flux.CH4.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) pseudoOptim.Rd:27: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) write.AFNI.Rd:16: Escaped LaTeX specials: \_
checkRd: (-1) write.AFNI.Rd:17: Escaped LaTeX specials: \_
checkRd: (-1) write.AFNI.Rd:20: Escaped LaTeX specials: \_
checkRd: (-1) write.AFNI.Rd:22: Escaped LaTeX specials: \_
Found the following significant warnings:
  BDSTest.c:84:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BDSTest.c:104:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BDSTest.c:129:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BDSTest.c:153:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BDSTest.c:192:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BDSTest.c:219:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BDSTest.c:227:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BDSTest.c:245:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  BDSTest.c:257:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fNonlinear.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
BugReports field is not a suitable URL but contains an email address:
   use the Contact field instead
checkRd: (-1) forecTheta-package.Rd:11: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Previous versions (not tagged nor released)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'Rsocp', 'Rnlminb2', 'Rdonlp2'
Found the following significant warnings:
  fracdiff.h:39:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  fdcore.c:31:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fracdiff.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘RandomFields’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) MultiAsset.Rd:26: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) CatalogueAccessors.Rd:249: Escaped LaTeX specials: \^ \^
checkRd: (-1) FrF2.Rd:574: Escaped LaTeX specials: \^
checkRd: (-1) FrF2.Rd:629: Escaped LaTeX specials: \^ \^
checkRd: (-1) IAPlot.Rd:87: Escaped LaTeX specials: \$
checkRd: (-1) block.Rd:121: Escaped LaTeX specials: \^
checkRd: (-1) block.Rd:150: Escaped LaTeX specials: \^ \^
checkRd: (-1) blockpick.Rd:114: Escaped LaTeX specials: \^ \^
Packages suggested but not available for checking: 'dggrids', 'INLA'
Unknown package ‘frm’ in Rd xrefs
Unknown package ‘frm’ in Rd xrefs
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'extraTrees', 'foba', 'nodeHarvest', 'obliqueRF', 'relaxo', 'rrlda'
Found the following significant warnings:
  init.c:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FSelectorRcpp.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mean.fts.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) median.fts.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) plot.fm.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) residuals.fm.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) sd.fts.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) var.fts.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) Spec_compare_localize_freq.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) Spec_compare_localize_freq.Rd:52: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘completeTrial_byArm_eventPriorRateC3=0.001_eventPriorRateT1=0_eventPriorRateT2=0_eventPriorWt=0.5.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.2.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.4.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.6.RData’
  ‘completeTrial_pooled_eventPriorRate=0.001_eventPriorWt=0.5.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.2.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.4.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.6.RData’
  ‘rcdf_byArm_arm=T1_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03.pdf’
  ‘rcdf_pooled_eventPriorRate=0.06.pdf’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  gamlr.c:87:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gamlr.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LGAclaims.Rd:30: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:34: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:35: Escaped LaTeX specials: \_
checkRd: (-1) LGAclaims.Rd:36: Escaped LaTeX specials: \_
Found the following significant warnings:
  loessc.c:74:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  loessc.c:76:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  loessc.c:78:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  loessc.c:80:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  loessc.c:82:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  loessc.c:84:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  loessc.c:86:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  loessc.c:88:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  loessc.c:90:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gam.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) GSE.Test.Main.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) meyer.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) mia.Rd:39: Escaped LaTeX specials: \#
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘checkdata.csv’ ‘gbmforest.sas’
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) fitgbd.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) fitgld.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) gb.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) gbd.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) gld.Rd:36: Escaped LaTeX specials: \&
Package in Depends field not imported from: ‘tools’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ‘:::’ calls:
  ‘tools:::.Rd_get_argument_names’ ‘tools:::RdTags’ ‘tools:::fetchRdDB’
  See the note in ?`:::` about the use of this operator.
checkRd: (-1) estprops.Rd:40: Escaped LaTeX specials: \&
Package suggested but not available for checking: ‘gputools’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  proj_conf_test.c:4:5: warning: function declaration isn't a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gdalcubes.Rcheck/00install.out’ for details.
Found the following calls to attach():
File ‘g.data/R/g.data.attach.R’:
  attach(NULL, pos, basename(dir))
See section ‘Good practice’ in ‘?attach’.
Found the following HTML validation problems:
gdistance.html:23:4 (gdistance.Rd:9): Warning: <img> attribute "align" not allowed for HTML5
Package suggested but not available for checking: ‘gdxrrw’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) plot_summary.Rd:14: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘genderdata’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
checkRd: (-1) SandP500.Rd:4: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following significant warnings:
  init.c:14:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GenSA.Rcheck/00install.out’ for details.
Found the following significant warnings:
  arms.c:99:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  arms.c:900:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/genscore.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  gensvm/include/gensvm_rand.h:44:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gensvm/src/gensvm_rand.c:105:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gensvm/src/gensvm_rand.c:112:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gensvm/src/gensvm_rand.c:153:10: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gensvm.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  geodesic.c:57:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/geodist.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:5:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:7:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/geohashTools.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘geomarocdata’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  GeoModels_init.c:33:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  GeoModels_init.c:34:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Utility.c:1057:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Utility.c:1144:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GeoModels.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wk/include/wk-v1.h:101:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wk/include/wk-v1.h:106:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:179:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:181:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:182:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:183:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:380:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:394:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:401:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wk/include/wk-v1-impl.c:50:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wk/include/wk-v1-impl.c:148:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/geos.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
Found the following calls to data() loading into the global environment:
File ‘geotools/R/zzz.R’:
  data(fr_geo_rad)
See section ‘Good practice’ in ‘?data’.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  getip_native.c:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ip_internal.c:71:20: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ip_internal.c:292:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/getip.Rcheck/00install.out’ for details.
checkRd: (-1) getopt.Rd:60: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gettz.Rcheck/00install.out’ for details.
checkRd: (-1) gexp.Rd:123: Escaped LaTeX specials: \&
Package suggested but not available for checking: ‘RGtk2’
checkRd: (-1) estGF.Rd:106: Escaped LaTeX specials: \&
checkRd: (-1) estGF.Rd:107: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    earlier versions
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following assignments to the global environment:
File ‘ggExtra/R/ggMarginalGadget.R’:
  assign(plotname, eval(parse(text = origPlot)), envir = .GlobalEnv)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) boot_eip.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) constrained.Rd:93: Escaped LaTeX specials: \&
checkRd: (-1) constrained.Rd:37: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘ggOceanMapsData’
'LazyData' is specified without a 'data' directory
checkRd: (-1) diamonds.Rd:10: Escaped LaTeX specials: \$ \$
Found the following HTML validation problems:
ggplot2-package.html:23:4 (ggplot2-package.Rd:9): Warning: <img> attribute "align" not allowed for HTML5
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    History
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘lixoftConnectors’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Bug fixes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    * Changes all data options to .data to decrease possibility of column naming overlap
Package suggested but not available for checking: ‘TraMineRextras’
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggseqplot.Rmd’ using rmarkdown
Quitting from lines 16-34 (ggseqplot.Rmd) 
Error: processing vignette ‘ggseqplot.Rmd’ failed with diagnostics:
there is no package called 'TraMineRextras'
--- failed re-building ‘ggseqplot.Rmd’

SUMMARY: processing the following file failed:
  ‘ggseqplot.Rmd’

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Initial Release (0.1.0)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Win CRAN check results - R Windows
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rgig.c:127:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ghyp.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Pictures_analyzed’ ‘cutoff_vals’ ‘cutoff_vals1’ ‘gina_cran.JPG’
Unknown package ‘IC2’ in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) randPIT.Rd:52: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) starship.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) starship.adaptivegrid.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) starship.adaptivegrid.Rd:54: Escaped LaTeX specials: \&
checkRd: (-1) starship.adaptivegrid.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) starship.obj.Rd:25: Escaped LaTeX specials: \&
Found the following significant warnings:
  gld.rs.fx.c:62:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gld.rs.fx.c:121:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gld.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘mlr3proba’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  phytr.c:419:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:2327:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3266:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3268:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3298:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3302:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3307:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3310:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3313:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3316:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3319:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3322:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  phytr.c:3325:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/glinvci.Rcheck/00install.out’ for details.
checkRd: (-1) glmc.Rd:232: Escaped LaTeX specials: \&
checkRd: (-1) glmc.Rd:241: Escaped LaTeX specials: \&
checkRd: (-1) glmc.control.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) glmc.control.Rd:31: Escaped LaTeX specials: \$
checkRd: (-1) glmc.summaries.Rd:79: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) basal.Rd:32: Escaped LaTeX specials: \_
checkRd: (-1) basal.Rd:33: Escaped LaTeX specials: \_ \_ \_
Found the following significant warnings:
  pb.c:27:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/glmnet.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) coef.glmulti.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) consensus.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) getfit.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-class.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti.Rd:99: Escaped LaTeX specials: \&
checkRd: (-1) summary.glmulti.Rd:72: Escaped LaTeX specials: \&
Package suggested but not available for checking: ‘cplexAPI’
Found the following significant warnings:
  rho_rho_excess.c:16:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/globalKinhom.Rcheck/00install.out’ for details.
Malformed Description field: should contain one or more complete sentences.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following significant warnings:
  glpkAPI.h:81:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.h:84:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.h:87:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.h:101:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.h:104:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.h:107:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.h:460:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.h:491:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.c:433:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.c:446:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.c:459:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.c:722:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.c:791:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.c:825:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  glpkAPI.c:3400:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/glpkAPI.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) replace_in_file.Rd:40: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) barleyHeights.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) barleyHeights.Rd:22: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) BVDWSTOXX.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:16: Escaped LaTeX specials: \& \&
checkRd: (-1) BVDWSTOXX.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:37: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Found the following significant warnings:
  R_register_native.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  R_register_native.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gower.c:60:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gower.c:72:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gower.c:83:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gower.Rcheck/00install.out’ for details.
checkRd: (-1) rotations.Rd:103: Escaped LaTeX specials: \^
Package suggested but not available for checking: ‘gvcm.cat’
Unknown package ‘gvcm.cat’ in Rd xrefs
Found the following significant warnings:
  engine.c:57:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  engine.c:111:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  options.c:3:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gpg.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) barplot2.Rd:219: Escaped LaTeX specials: \_
checkRd: (-1) colorpanel.Rd:31: Escaped LaTeX specials: \#
checkRd: (-1) qqnorm.aov.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) venn.Rd:59: Escaped LaTeX specials: \_
checkRd: (-1) GPoM.FDLyapu-package.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) Plague.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) lyapFDGrond.Rd:66: Escaped LaTeX specials: \&
checkRd: (-1) lyapFDGrond.Rd:68: Escaped LaTeX specials: \&
checkRd: (-1) lyapFDGrond.Rd:69: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) corrApp.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) crdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) descApp.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) layoutApp.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) rbdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) ttApp.Rd:43: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) gen_graph_indep.Rd:126: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mlGraphicalVAR.Rd:79: Escaped LaTeX specials: \~
Packages suggested but not available for checking:
  'taxstats', 'taxstats1516'
Found the following significant warnings:
  Offset.c:3:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  omp_diagnose.c:5:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  omp_diagnose.c:18:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/grattan.Rcheck/00install.out’ for details.
Found the following significant warnings:
  init.c:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gRbase.Rcheck/00install.out’ for details.
Found the following significant warnings:
  init.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gRc.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
  ...
--- re-building ‘printCrudeAndAdjustedModel.Rmd’ using rmarkdown
Loading required package: forestplot
Loading required package: grid
Loading required package: checkmate
Loading required package: abind
Loading required package: Gmisc
Loading required package: Rcpp
Loading required package: htmlTable
Loading required package: lattice
Loading required package: survival
Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

Quitting from lines 70-77 (printCrudeAndAdjustedModel.Rmd) 
Error: processing vignette ‘printCrudeAndAdjustedModel.Rmd’ failed with diagnostics:
could not find function "%>%"
--- failed re-building ‘printCrudeAndAdjustedModel.Rmd’

--- re-building ‘timeSplitter.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:Hmisc':

    src, summarize

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning in coxph(formula = Surv(Start_time, Stop_time, status == "Died from melanoma") ~  :
  a variable appears on both the left and right sides of the formula
Warning in coxph(formula = Surv(Start_time, Stop_time, status == "Died from melanoma") ~  :
  a variable appears on both the left and right sides of the formula
--- finished re-building ‘timeSplitter.Rmd’

SUMMARY: processing the following file failed:
  ‘printCrudeAndAdjustedModel.Rmd’

Error: Vignette re-building failed.
Execution halted
Problems with news in ‘NEWS.md’:
No news entries found.
accrualReport: multiple local function definitions for ‘gg’ with
  different formal arguments
GNU make is a SystemRequirements.
Malformed Description field: should contain one or more complete sentences.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gRim.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘p1_20up-vs-p2_25up_in_str1.txt’ ‘p1_20up-vs-p2_25up_in_str2.txt’
  ‘p2_25up-vs-p1_20up_in_str1.txt’ ‘p2_25up-vs-p1_20up_in_str2.txt’
  ‘s0_20up.txt’ ‘s0_30up.txt’ ‘s0_f2up.txt’ ‘strs.vec_01mx.txt’
  ‘strs.vec_02mx.txt’ ‘strs.vec_03mx.txt’ ‘strs.vec_04mx.txt’
  ‘strs.vec_05mx.txt’ ‘strs.vec_06mx.txt’ ‘strs.vec_30up.txt’
  ‘strs.vec_50up.txt’ ‘strs.vec_f2up.txt’ ‘uni_p1_20up-p2_25up.txt’
checkRd: (-1) fmddisc.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:46: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:54: Escaped LaTeX specials: \&
Found the following files/directories:
  ‘FMD mag discontinuities_disc.png’ ‘FMD mag
  discontinuities_disc1.res’ ‘FMD mag discontinuities_disc2.res’
  ‘IDYLLWILD_bvmed.png’ ‘IDYLLWILD_fig.png’ ‘Schuster's
  diagram_schu.png’ ‘hour.res’
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  smolyak.c:58:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  smolyak.c:79:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  smolyak.c:227:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  smolyak.c:477:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gss.Rcheck/00install.out’ for details.
checkRd: (-1) fit.variogram.Rd:91: Escaped LaTeX specials: \&
checkRd: (-1) fit.variogram.gls.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) gstat.Rd:117: Escaped LaTeX specials: \&
checkRd: (-1) hscat.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) krige.Rd:163: Escaped LaTeX specials: \&
checkRd: (-1) krigeST.Rd:85: Escaped LaTeX specials: \&
checkRd: (-1) meuse.all.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) predict.gstat.Rd:155: Escaped LaTeX specials: \&
checkRd: (-1) variogram.Rd:163: Escaped LaTeX specials: \&
checkRd: (-1) variogramST.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) vgm.Rd:116: Escaped LaTeX specials: \&
Found the following significant warnings:
  wrappers.c:67:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gsw.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) gsym.point.Rd:143: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘RRprof.out’
'LazyData' is specified without a 'data' directory
checkRd: (-1) GUTS-package.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) GUTS.Rd:201: Escaped LaTeX specials: \&
checkRd: (-1) GUTS.Rd:209: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) luzdat.Rd:21: Escaped LaTeX specials: \~
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following files/directories:
  ‘testdata1.txt’ ‘testdata2.txt’ ‘testdata3.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running ‘testthat.R’ [7s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(hablar)
  > test_check("hablar")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 416 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test.convert.R:118'): from Date ───────────────────────────────────
  tibble(a = as.Date(c("1970-05-03", NA, "1987-04-20"))) %>% convert(dtm(a)) not equal to tibble(a = as.POSIXct(as.Date(c("1970-05-03", NA, "1987-04-20")))).
  Component "a": 'tzone' attributes are inconsistent ('Europe/London' and 'UTC')
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 416 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  haplo.stats_init.c:22:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  haplo_em_pin.h:107:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  haplo_em_pin.c:1143:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  seqhap.c:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  seqhap.c:19:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  seqhap.c:110:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  seqhap.c:627:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  seqhap.c:807:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/haplo.stats.Rcheck/00install.out’ for details.
checkRd: (-1) haplo.design.Rd:33: Escaped LaTeX specials: \$
checkRd: (-1) haplo.design.Rd:42: Escaped LaTeX specials: \$
checkRd: (-1) haplo.glm.Rd:176: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) haplo.glm.Rd:178: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) haplo.glm.Rd:283: Escaped LaTeX specials: \$ \$
checkRd: (-1) haplo.glm.Rd:292: Escaped LaTeX specials: \$ \$
checkRd: (-1) haplo.glm.Rd:324: Escaped LaTeX specials: \$ \$
'LazyData' is specified without a 'data' directory
checkRd: (-1) HWAlr.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) HWAlrPlot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) HWClr.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) HWClrPlot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) HWIlr.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) HWf.Rd:25: Escaped LaTeX specials: \&
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/harmony.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) hash-accessors.Rd:46: Escaped LaTeX specials: \$
checkRd: (-1) hash-class.Rd:44: Escaped LaTeX specials: \$
checkRd: (-1) hash-class.Rd:45: Escaped LaTeX specials: \$
checkRd: (-1) hash-package.Rd:39: Escaped LaTeX specials: \#
Found the following significant warnings:
  readstat/readstat_bits.h:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/readstat_bits.c:11:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/readstat_variable.c:5:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/readstat_variable.c:8:25: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/sas/../readstat_bits.h:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/sas/ieee.c:19:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/sas/ieee.c:99:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/sas/readstat_sas.c:123:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/sas/readstat_xport_read.c:48:21: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/spss/readstat_por.h:34:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/spss/readstat_por.c:67:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/spss/readstat_por_write.c:170:25: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/spss/../readstat_bits.h:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  readstat/stata/../readstat_bits.h:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/haven.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) prm09.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) prm09.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) schools.Rd:18: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  H5Error.h:25:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  datatype_export.c:64:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  H5Error.c:122:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/hdf5r.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘synbreed’
'LazyData' is specified without a 'data' directory
checkRd: (-1) erode.hexbin.Rd:43: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ohio.Rd:104: Escaped LaTeX specials: \&
checkRd: (-1) ohio.Rd:105: Escaped LaTeX specials: \&
Found the following significant warnings:
  jack-n.c:203:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:206:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:219:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:220:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:259:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:260:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:303:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:327:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:890:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:937:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:1721:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jack-n.c:1727:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rk.c:48:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  so3_nc.c:22:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  so3_nc.c:116:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/hgm.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
‘:::’ call which should be ‘::’: ‘ggplot2:::guide_axis’
  See the note in ?`:::` about the use of this operator.
Unexported objects imported by ‘:::’ calls:
  ‘ggplot2:::build_guides’ ‘ggplot2:::scales_list’
  See the note in ?`:::` about the use of this operator.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
Package suggested but not available for checking: ‘colorfulVennPlot’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  arms-R.c:83:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  arms-R.c:811:30: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 4 has type ‘POINT *’ {aka ‘struct point *’} [-Wformat=]
  arms-R.c:821:26: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘POINT *’ {aka ‘struct point *’} [-Wformat=]
  arms-R.c:821:38: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 4 has type ‘struct point *’ [-Wformat=]
  arms-R.c:821:51: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 5 has type ‘struct point *’ [-Wformat=]
  arms-R.c:832:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/HI.Rcheck/00install.out’ for details.
checkRd: (-1) trans.dens.Rd:47: Escaped LaTeX specials: \&
Found the following significant warnings:
  registerDynamicSymbol.c:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:13:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:14:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:18:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:19:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:21:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:22:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:23:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:24:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  registerDynamicSymbol.c:25:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/hisse.Rcheck/00install.out’ for details.
checkRd: (-1) Snow.Rd:118: Escaped LaTeX specials: \&
checkRd: (-1) Snow.Rd:142: Escaped LaTeX specials: \&
checkRd: (-1) Yeast.Rd:56: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘trackr’
Package which this enhances but not available for checking: ‘HadoopStreaming’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘FGN’
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following significant warnings:
  ranksort.c:3:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ranksort.c:49:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ranksort.c:76:14: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Hmisc.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) disc42.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) discrimination.Rd:31: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘glmmADMB’
checkRd: (-1) Dmean.Rd:62: Escaped LaTeX specials: \&
checkRd: (-1) Dvar.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) babies.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) residuals.rsm.Rd:74: Escaped LaTeX specials: \&
Error(s) in re-building vignettes:
  ...
--- re-building ‘hockey-ref-scrapers.Rmd’ using rmarkdown
Quitting from lines 50-56 (hockey-ref-scrapers.Rmd) 
Error: processing vignette ‘hockey-ref-scrapers.Rmd’ failed with diagnostics:
Could not get skater stats for 2022
--- failed re-building ‘hockey-ref-scrapers.Rmd’

--- re-building ‘hockeyR.Rmd’ using rmarkdown
--- finished re-building ‘hockeyR.Rmd’

SUMMARY: processing the following file failed:
  ‘hockey-ref-scrapers.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘ROI.plugin.mosek’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'RGtk2', 'cairoDevice'
checkRd: (-1) attributes_speclib.Rd:73: Escaped LaTeX specials: \$
checkRd: (-1) get_reflectance.Rd:34: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  useful.h:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/hSDM.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  htree.c:126:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:135:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:324:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:362:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:408:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:517:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:693:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:711:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:813:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:1476:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:1494:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:1528:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:1679:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:1754:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:1839:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:1869:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:1909:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:2906:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  htree.c:3696:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:13:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/htree.Rcheck/00install.out’ for details.
checkRd: (-1) simplePostToHost.Rd:14: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  humanleague_init.c:14:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/humanleague.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘hurricaneexposuredata’
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) Trancura9414001.Rd:27: Escaped LaTeX specials: \_
checkRd: (-1) Trancura9414001.Rd:28: Escaped LaTeX specials: \_
checkRd: (-1) hydroPSO.Rd:390: Escaped LaTeX specials: \&
checkRd: (-1) hydroPSO.Rd:408: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) SandP500.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) SandP500.Rd:7: Escaped LaTeX specials: \&
checkRd: (-1) palettes.Rd:25: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘AIC.txt’ ‘AICc.txt’ ‘IAS.pdf’ ‘IAS2.pdf’ ‘IAS3.pdf’
  ‘P.microlepis-AIC.txt’ ‘P.microlepis-AICc.txt’ ‘P.microlepis-IAS.pdf’
  ‘P.microlepis-IAS2.pdf’ ‘P.microlepis-IAS3.pdf’
Package suggested but not available for checking: ‘gutenbergr’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ibdreg_init.c:22:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mcmemory.h:188:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sim.mark.prop.c:85:29: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sim.mark.prop.c:88:29: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sim.mark.prop.c:90:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sim.mark.prop.c:303:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sim.mark.prop.c:814:22: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sim.mark.prop.c:877:29: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sim.mark.prop.c:1018:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ibdreg.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘SparkR’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘icd’
checkRd: (-1) ICEscale.Rd:53: Escaped LaTeX specials: \^
checkRd: (-1) dpwdg.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) dpwdg.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) dmahal.Rd:18: Escaped LaTeX specials: \~
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ichimoku.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) pulmonary.Rd:13: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘rggobi’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘optiRum’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘IFCdata’
Found the following significant warnings:
  ../inst/include/ut_debug.h:188:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ut_debug.c:102:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ifultools.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  core/core/error.c:65:29: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  vendor/plfit/gss.h:132:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  vendor/plfit/gss.c:60:20: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  vendor/plfit/mt.c:20:17: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  vendor/plfit/platform.c:36:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rrandom.h:26:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:104:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rinterface.c:2506:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rinterface.c:2522:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rinterface.c:9433:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rrandom.c:108:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/igraph.Rcheck/00install.out’ for details.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  common.c:62:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utils.c:9:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ijtiff.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RNifti/include/RNifti.h:58:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  RNifti_shim.h:19:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RNifti/include/RNiftiAPI.h:268:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  RNifti_shim.c:39:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  print.h:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  core.c:717:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/imbibe.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘accdata’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) school23.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) school23.Rd:35: Escaped LaTeX specials: \&
Found the following significant warnings:
  keyplayer-utils.c:24:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/influenceR.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
No news entries found.
BugReports field should be the URL of a single webpage
Package which this enhances but not available for checking: ‘gurobi’
Found the following files/directories:
  ‘c.txt’ ‘rho.txt’ ‘sta.txt’ ‘topo.txt’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
Package suggested but not available for checking: ‘INLA’
Found the following significant warnings:
  DefinePolygons.c:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  DefinePolygons.c:18:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/inlmisc.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    INSPECTumours (development version)
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    TODO for future releases:
Malformed Title field: should not end in a period.
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Error_Estimation_Response_1.tiff’ ‘Error_Estimation_Response_2.tiff’
  ‘Error_Estimation_Response_3.tiff’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) Intervals-class.Rd:109: Escaped LaTeX specials: \_
checkRd: (-1) Intervals-class.Rd:110: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:68: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:76: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:77: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:78: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:79: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:81: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:88: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:89: Escaped LaTeX specials: \_
checkRd: (-1) Intervals_virtual-class.Rd:90: Escaped LaTeX specials: \_
checkRd: (-1) sgd.Rd:12: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
File ‘iotools/libs/iotools.so’:
  Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’,
    ‘R_WriteConnection’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) constrained.Rd:49: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  phi.h:33:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/IRon.Rcheck/00install.out’ for details.
checkRd: (-1) bp.coeff.raw.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) fleiss.kappa.raw.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:17: Escaped LaTeX specials: \&
checkRd: (-1) ir_to_transmittance.Rd:49: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) pine.Rd:20: Escaped LaTeX specials: \&
Found the following significant warnings:
  trace_islasso.c:39:14: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/islasso.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following files/directories:
  ‘RMTplot.pdf’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘gurobi’
Package suggested but not available for checking: ‘locClass’
checkRd: (-1) ivmodel.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) ivmodelFormula.Rd:79: Escaped LaTeX specials: \&
Packages suggested but not available for checking: 'gurobi', 'cplexAPI'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  jGDtalk.c:116:16: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  jGDtalk.c:797:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  javaGD.c:373:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  javaGD.c:382:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/JavaGD.Rcheck/00install.out’ for details.
Output from running autoreconf:
  configure.ac:4: warning: The macro `AC_CONFIG_HEADER' is obsolete.
  configure.ac:4: You should run autoupdate.
  ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
  configure.ac:4: the top level
  configure.ac:24: warning: The macro `AC_HEADER_STDC' is obsolete.
  configure.ac:24: You should run autoupdate.
  ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from...
  configure.ac:24: the top level
  configure.ac:30: warning: The macro `AC_HEADER_TIME' is obsolete.
  configure.ac:30: You should run autoupdate.
  ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from...
  configure.ac:30: the top level
  configure.ac:34: warning: The macro `AC_TYPE_SIGNAL' is obsolete.
  configure.ac:34: You should run autoupdate.
  ./lib/autoconf/types.m4:776: AC_TYPE_SIGNAL is expanded from...
  configure.ac:34: the top level
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    joineR <1.1
Package which this enhances but not available for checking: ‘remMap’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  rjcommon.h:75:31: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/jpeg.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  push_parser.h:1:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  yajl/yajl_tree.c:523:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/jsonlite.Rcheck/00install.out’ for details.
checkRd: (-1) summ.rq.Rd:104: Escaped LaTeX specials: \&
checkRd: (-1) summ.rq.Rd:108: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    pre-release juicr (2017 - 2021)
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘my.Mobius.set.func.csv’ ‘my.card.set.func.csv’ ‘my.set.func.csv’
Found the following files/directories:
  ‘song.wav’ ‘song4karaoke.wav’
Found the following HTML validation problems:
math_to_rd.html:81:2153 (math_to_rd.Rd:45): Warning: <svg> attribute "width" has invalid value "400em"
math_to_rd.html:81:2153 (math_to_rd.Rd:45): Warning: <svg> attribute "height" has invalid value "1.08em"
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  /usr/include/c++/12/array:61:36: warning: array subscript 18446744073709551615 is above array bounds of ‘std::__array_traits<double, 1>::_Type’ {aka ‘const double [1]’} [-Warray-bounds]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/kdtools.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) ionosphere.Rd:22: Escaped LaTeX specials: \&
checkRd: (-1) ionosphere.Rd:32: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  keypress-unix.c:3:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keypress-win.c:3:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/keypress.Rcheck/00install.out’ for details.
Found the following significant warnings:
  init.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:30:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keyring_macos.c:523:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keyring_secret_service.c:3:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keyring_secret_service.c:15:21: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keyring_secret_service.c:59:19: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keyring_secret_service.c:91:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keyring_secret_service.c:394:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keyring_wincred.c:3:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/keyring.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Minor Changes
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  kit.h:92:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utils.c:21:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/kit.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘rkward’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘cld1.Rdata’ ‘main.tex’ ‘myCld.Rdata’ ‘myCld3d.Rdata’ ‘scene.asy’
Found the following files/directories:
  ‘cld1.Rdata’ ‘ld.Rdata’ ‘myCld.Rdata’
checkRd: (-1) pathFrechet.Rd:54: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Killed after ’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘VARSEDIG’
Unknown package ‘VARSEDIG’ in Rd xrefs
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'koRpus.lang.de', 'koRpus.lang.es', 'koRpus.lang.fr',
  'koRpus.lang.it', 'koRpus.lang.nl', 'koRpus.lang.pt',
  'koRpus.lang.ru'

Package which this enhances but not available for checking: ‘rkward’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘KSEA Bar Plot.tiff’ ‘KSEA Kinase Scores.csv’
  ‘KSEA.Merged.Heatmap.png’ ‘Kinase-Substrate Links.csv’
'LazyData' is specified without a 'data' directory
checkRd: (-1) kstIO-package.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) read_kbase.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) read_kdata.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) read_kfamset.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) read_kspace.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) read_kstructure.Rd:45: Escaped LaTeX specials: \&
checkRd: (-1) read_surmiserelation.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) write_kbase.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) write_kdata.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) write_kspace.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) write_kstructure.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) write_surmiserelation.Rd:36: Escaped LaTeX specials: \&
Found the following files/directories:
  ‘DF7.bas’ ‘DF7.dat’ ‘DF7.rel’ ‘DF7.spc’ ‘DF7.struct’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) alphaOnly.Rd:25: Escaped LaTeX specials: \^
checkRd: (-1) alphaOnly.Rd:26: Escaped LaTeX specials: \$
checkRd: (-1) escape.Rd:28: Escaped LaTeX specials: \$
checkRd: (-1) natlongsurv.Rd:28: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘MYSLID.csv’ ‘tabelle.csv’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:34:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/laGP.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  reader.h:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  languageserver.c:16:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  reader.c:110:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/languageserver.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LaplaceApproximation.Rd:485: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:115: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:117: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following significant warnings:
  init.c:19:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/largeList.Rcheck/00install.out’ for details.
Found the following files/directories:
  ‘example.llo’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘ergm.userterms’
checkRd: (-1) simulate.ergmm.Rd:35: Escaped LaTeX specials: \$
checkRd: (-1) simulate.ergmm.Rd:36: Escaped LaTeX specials: \$
Unknown package ‘ergm.userterms’ in Rd xrefs
GNU make is a SystemRequirements.
Found the following significant warnings:
  init.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:18:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:24:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:27:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/later.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  lrsmp.h:147:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lrsmp.c:40:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/LatticeDesign.Rcheck/00install.out’ for details.
checkRd: (-1) LKrig.MLE.Rd:114: Escaped LaTeX specials: \$ \$
checkRd: (-1) LKrig.MLE.Rd:115: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'gof', 'lava.tobit'
checkRd: (-1) Col.Rd:17: Escaped LaTeX specials: \#
checkRd: (-1) regression-set.Rd:103: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Found the following calls to attach():
File ‘lazyData/R/requireData.R’:
  attach(NULL, pos = pos, name = searchDataName)
See section ‘Good practice’ in ‘?attach’.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) goodnessfit.Rd:105: Escaped LaTeX specials: \&
checkRd: (-1) lba.Rd:252: Escaped LaTeX specials: \&
checkRd: (-1) pregnancy.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) pregnancy.Rd:46: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    lcars.0.3.1
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘temp.float.csv’ ‘temp.result.athena.csv’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  lcopula-init.c:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lcopula.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    light.interception.voxels() - This function create the Fraction absorbed incident light
    light.interception.raster() - Create a raster of Fraction absorbed incident light
    light.incident.voxels() - This function create the Fraction incident light
    light.incident.raster() - Create a raster of the Fraction incident light
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) leaps.Rd:38: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  rigraph/src/plfit/gss.h:132:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rigraph/src/plfit/gss.c:60:20: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rigraph/src/plfit/platform.c:36:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rigraph/src/plfit/mt.c:20:17: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rigraph/src/init.c:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rigraph/src/init.c:104:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rigraph/src/rinterface.c:2354:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rigraph/src/rinterface.c:2370:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rigraph/src/rinterface.c:9538:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rigraph/src/glpk_support.c:95:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/leidenbase.Rcheck/00install.out’ for details.
Found the following significant warnings:
  lemna.c:98:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lemna.c:109:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lemna.c:120:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lemna.c:129:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lemna.c:138:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lemna.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [18s/33s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  > library("LexisNexisTools")
  LexisNexisTools Version 0.3.5
  > 
  > test_check("LexisNexisTools")
  
    |                                                  | 0 % ~calculating  
    |+++++                                             | 10% ~00s          
    |++++++++++                                        | 20% ~00s          
    |+++++++++++++++                                   | 30% ~00s          
    |++++++++++++++++++++                              | 40% ~00s          
    |+++++++++++++++++++++++++                         | 50% ~00s          
    |++++++++++++++++++++++++++++++                    | 60% ~00s          
    |+++++++++++++++++++++++++++++++++++               | 70% ~00s          
    |++++++++++++++++++++++++++++++++++++++++          | 80% ~00s          
    |+++++++++++++++++++++++++++++++++++++++++++++     | 90% ~00s          
    |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=00s  
    adding: sample.DOCX (deflated 45%)
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 99 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • !dir.exists("/home/johannes/Dropbox/LexisNexis_sample_files/") is TRUE (1)
  • On CRAN (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-lnt_convert.R:16'): Convert LNToutput to rDNA ────────────────
  {
      ...
  } not equal to readRDS("../files/rDNA.RDS").
  Component "date": 'tzone' attributes are inconsistent ('UTC' and '')
  
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 99 ]
  Error: Test failures
  Execution halted
Found the following significant warnings:
  lfe.h:121:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lfe.h:122:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utils.c:195:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  utils.c:208:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lfe.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) hydro.Rd:17: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following significant warnings:
  init.c:14:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lhs.Rcheck/00install.out’ for details.
Found the following significant warnings:
  trainLinear.c:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  trainLinear.c:93:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/LiblineaR.ACF.Rcheck/00install.out’ for details.
Found the following significant warnings:
  trainLinear.c:19:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  trainLinear.c:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  trainLinear.c:100:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  trainLinear.c:130:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/LiblineaR.Rcheck/00install.out’ for details.
checkRd: (-1) predict.lb.Rd:16: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'gWidgets', 'gWidgetsRGtk2', 'RGtk2'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/liGP.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LIMEcoli.Rd:125: Escaped LaTeX specials: \_
checkRd: (-1) Read.Rd:88: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:92: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:98: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:104: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:105: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:106: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:107: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:108: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:109: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:110: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:111: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:112: Escaped LaTeX specials: \# \#
checkRd: (-1) Read.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) Read.Rd:114: Escaped LaTeX specials: \# \#
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following math rendering problems:
WLindley.Rd:54: Undefined control sequence: \label in ...e^{-\theta x}  \label{density-weight...
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) solveLP.Rd:119: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  littler.c:334:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  littler.c:368:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  littler.c:393:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  littler.c:426:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  littler.c:456:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/littler.Rcheck/00install.out’ for details.
checkRd: (-1) lstats.liu.Rd:41: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) MHDI.Rd:23: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) cauchypoly.Rd:39: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) cauchypoly.Rd:40: Escaped LaTeX specials: \_
checkRd: (-1) normpoly.Rd:38: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) normpoly.Rd:39: Escaped LaTeX specials: \_
Running examples in ‘lmomPi-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cdf
> ### Title: Generic function for 'cdf...': probability distribution fitting
> ###   with L-Moments.
> ### Aliases: cdf spi.cdf cdf.spi
> 
> ### ** Examples
> 
> 
> # Sample L-moments of Ozone from the airquality data
> data(airquality)
> lmom <- samlmu(airquality$Ozone,nmom=6)
> 
> distrib <- c("exp","gam","gev","glo","gpa","gno","gum","kap",
+ "ln3","nor","pe3","wak","wei")
> 
> para_list <- pel(distrib=distrib,lmom=lmom)
> cdf_list <- cdf(para=para_list,x=airquality$Ozone)
> 
>  library(rasterList)
Loading required package: raster
Loading required package: sp
>  precff <- system.file("map/Mekrou_precipitation.grd", package="rasterList")
> 	precs <- stack(precff)
>  prec_point <- precs[143][,]
> 
>  ## month index 
>  month <- as.character(as.Date(names(prec_point),format="X%Y.%m.%d"),format="M%m")
Warning in as.character.POSIXt(as.POSIXlt(x), ...) :
  as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?
>  prec_point[(prec_point<1) & (month=="M01")] <- 0
> 
>  distrib_prec2 <- c("gam")
>  para_vvv <- pel(x=prec_point,indices=month,distrib=distrib_prec2)
Error in if (lmom[2] == 0) { : missing value where TRUE/FALSE needed
Calls: pel -> tapply -> lapply -> FUN -> pel
Execution halted
'LazyData' is specified without a 'data' directory
checkRd: (-1) hatr.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) lmSubsets-package.Rd:48: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘tTestTable.rda’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Author
    Maintainer
checkRd: (-1) SPSloess.Rd:71: Escaped LaTeX specials: \^ \^
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  CPkPlj.c:160:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  CPkPlj.c:324:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  CcovI.c:21:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/locits.Rcheck/00install.out’ for details.
checkRd: (-1) TrafficFlow.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) ACS.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) EmployedACS.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSale.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSaleCA.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSaleCanton.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) HomesForSaleNY.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) MustangPrice.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) MustangPrice.Rd:24: Escaped LaTeX specials: \$
checkRd: (-1) SalaryGender.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) SandP500.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) SandP500.Rd:24: Escaped LaTeX specials: \&
checkRd: (-1) SandP500.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) SandwichAnts.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) SandwichAnts2.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) StockChanges.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) StockChanges.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) TrafficFlow.Rd:18: Escaped LaTeX specials: \#
Found the following significant warnings:
  locpol.c:101:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/locpol.Rcheck/00install.out’ for details.
checkRd: (-1) KernelChars.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) Kernels.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) PRDenEstC.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) compKernVals.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) denCVBwSelC.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) equivKernel.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) kernelCtes.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) locPolWeights.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) locpol.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) locpol.Rd:82: Escaped LaTeX specials: \&
checkRd: (-1) locpolSmoothers.Rd:54: Escaped LaTeX specials: \&
checkRd: (-1) pluginBw.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) regCVBwSelC.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) thumbBw.Rd:40: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  logconweights.c:21:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  logconweights.c:25:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  logconweights.c:27:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  solvoptweights.c:63:16: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  solvoptweights.c:64:16: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  solvoptweights.c:66:16: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  solvoptweights.c:68:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  solvoptweights.c:129:7: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  solvoptweights.c:697:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  solvoptweights.c:700:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  useful.c:59:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/LogConcDEAD.Rcheck/00install.out’ for details.
Found the following significant warnings:
  logconcens.c:124:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/logconcens.Rcheck/00install.out’ for details.
Found the following significant warnings:
  clogic.c:13:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  clogic.c:14:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  clogic.c:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  clogic.c:17:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  clogic.c:59:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  clogic.c:69:15: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  clogic.c:80:16: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  swrite.c:2:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  swrite.c:14:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/LogicReg.Rcheck/00install.out’ for details.
checkRd: (-1) logreg.myown.Rd:19: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:20: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:24: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:99: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:120: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:132: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:133: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:134: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:172: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:182: Escaped LaTeX specials: \_ \_
checkRd: (-1) logreg.myown.Rd:184: Escaped LaTeX specials: \_ \_
Found the following significant warnings:
  veclib.h:316:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/logistf.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘main.tex’ ‘scene.asy’
'LazyData' is specified without a 'data' directory
checkRd: (-1) butstrap.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) butstrap.nri.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) butstrap.s.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) maxauc.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) maxauc.s.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) nri.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) roc.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) roc.s.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) sensspec.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) sensspec.s.Rd:47: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Model_1.cm’ ‘dambacher.dot’ ‘levins.dot’
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘scio’
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  LowRankQP.c:278:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  LowRankQP_init.c:29:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/LowRankQP.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Checking should be performed on sources prepared by ‘R CMD build’.
'LazyData' is specified without a 'data' directory
checkRd: (-1) lpepa.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) lpepa.Rd:90: Escaped LaTeX specials: \&
checkRd: (-1) lpridge.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) lpridge.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) lpridge.Rd:65: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ../inst/include/RlpSolveLink.h:288:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  RlpSolveLink.c:2442:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lpSolveAPI.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘kerdiest’
checkRd: (-1) specialchars.Rd:6: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) LS.kalman.Rd:65: Escaped LaTeX specials: \&
checkRd: (-1) spectral.density.Rd:55: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  period.c:116:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lubridate.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘test’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  proj_conf_test.c:5:5: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  proj_conf_test.c:4:5: warning: function declaration isn't a prototype [-Wstrict-prototypes]
  liblwgeom/liblwgeom.h:305:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  liblwgeom/lwboundingcircle.c:36:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  liblwgeom/lwboundingcircle.c:217:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  lwin_wkt_lex.l:16:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lwgeom.Rcheck/00install.out’ for details.
Found the following significant warnings:
  map_lib.h:42:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  map_lib.c:45:7: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lxb.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) read.magpie.Rd:20: Escaped LaTeX specials: \_ \_
checkRd: (-1) read.magpie.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) read.magpie.Rd:35: Escaped LaTeX specials: \_
checkRd: (-1) read.magpie.Rd:36: Escaped LaTeX specials: \_
checkRd: (-1) read.magpie.Rd:65: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:24: Escaped LaTeX specials: \_ \_
checkRd: (-1) write.magpie.Rd:27: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:39: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:40: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:42: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:43: Escaped LaTeX specials: \_
checkRd: (-1) write.magpie.Rd:70: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
checkRd: (-1) cilleruelo.Rd:36: Escaped LaTeX specials: \#
Problems with news in ‘NEWS.md’:
No news entries found.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
Package unavailable to check Rd xrefs: ‘INLA’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  libCEigen.c:76:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ManlyMix.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘RGtk2’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Gmake.c:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:26:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:36:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:66:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:88:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:93:16: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:113:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:128:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:174:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Gmake.c:211:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Lmake.c:18:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Lmake.c:26:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Lmake.c:36:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Lmake.c:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Lmake.c:73:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Lmake.c:96:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Lmake.c:119:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Lmake.c:172:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Lmake.c:224:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mapdata.Rcheck/00install.out’ for details.
checkRd: (-1) china.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) china.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) japan.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) japan.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) nzHires.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) nzHires.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) rivers.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) rivers.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) world2Hires.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) world2Hires.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) worldHires.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) worldHires.Rd:52: Escaped LaTeX specials: \&
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Bug Fixes
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  mapproject.c:16:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mapproject.c:20:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mapproject.c:67:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mapproject.c:111:12: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mapproject.c:130:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mapproj.Rcheck/00install.out’ for details.
checkRd: (-1) mapproject.Rd:203: Escaped LaTeX specials: \_
checkRd: (-1) mapproject.Rd:204: Escaped LaTeX specials: \_
checkRd: (-1) mapproject.Rd:210: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘scrubr’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    To do
Package suggested but not available for checking: ‘tidyterra’
Unknown package ‘tidyterra’ in Rd xrefs
checkRd: (-1) county.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) county.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) france.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) france.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) italy.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) italy.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) match.map.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) nz.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) nz.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) state.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) state.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) state.carto.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) state.carto.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) state.vbm.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) state.vbm.Rd:45: Escaped LaTeX specials: \&
checkRd: (-1) usa.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) usa.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) world.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) world.Rd:45: Escaped LaTeX specials: \&
checkRd: (-1) world2.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) world2.Rd:54: Escaped LaTeX specials: \&
checkRd: (-1) sw_sfac.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) Interpolation-class.Rd:41: Escaped LaTeX specials: \#
checkRd: (-1) MareyMap-class.Rd:85: Escaped LaTeX specials: \_
checkRd: (-1) MareyMap-methods.Rd:11: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) MareyMap-methods.Rd:12: Escaped LaTeX specials: \_
checkRd: (-1) SpeciesMaps-methods.Rd:11: Escaped LaTeX specials: \_
checkRd: (-1) interpolation-methods.Rd:13: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
checkRd: (-1) mma.Rd:67: Escaped LaTeX specials: \&
checkRd: (-1) residuals.rsm.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) marima.Rd:223: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  Rmarkdown.h:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  Rmarkdown.c:179:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  html_blocks.h:90:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  html_blocks.h:144:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/markdown.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘flashr’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) GerberGreenImai.Rd:22: Escaped LaTeX specials: \#
checkRd: (-1) GerberGreenImai.Rd:31: Escaped LaTeX specials: \#
checkRd: (-1) GerberGreenImai.Rd:34: Escaped LaTeX specials: \#
checkRd: (-1) GerberGreenImai.Rd:35: Escaped LaTeX specials: \#
Package suggested but not available for checking: ‘gurobi’
'LazyData' is specified without a 'data' directory
checkRd: (-1) size_t-class.Rd:6: Escaped LaTeX specials: \_
Found the following significant warnings:
  libCEigen.c:76:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatManlyMix.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Found the following significant warnings:
  t_sparseVector.c:83:17: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  chm_common.h:72:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  chm_common.h:93:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  chm_common.h:94:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  chm_common.c:8:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  chm_common.c:25:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  chm_common.c:50:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Matrix.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  allocMatrix2.c:10:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  allocMatrix2.c:16:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/matrixStats.Rcheck/00install.out’ for details.
Found the following files/directories:
  ‘utilities.R’
'LazyData' is specified without a 'data' directory
checkRd: (-1) maxControl.Rd:83: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘map_5.png’ ‘maze_5.html’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cplexAPI’
checkRd: (-1) salamander.Rd:22: Escaped LaTeX specials: \&
checkRd: (-1) mc.lnOR.Rd:7: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) MCtest.Rd:39: Escaped LaTeX specials: \#
checkRd: (-1) MCtest.Rd:40: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  chMatrix.c:162:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mcmcsae_init.c:16:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mcmcsae.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) eigp.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:41: Escaped LaTeX specials: \&
Checking should be performed on sources prepared by ‘R CMD build’.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Initial version.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) glass.Rd:23: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) glass.Rd:24: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) glass.Rd:25: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) glass.Rd:26: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) pBED.Rd:34: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  threat-safe-random.h:58:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  threat-safe-random.h:70:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mdgc.Rcheck/00install.out’ for details.
Package suggested but not available for checking: ‘RGtk2’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mriTest.Rd:9: Escaped LaTeX specials: \&
checkRd: (-1) riTest.Rd:9: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘MethylCapSig’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  meanr_native.c:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  meanr_nthreads.c:9:19: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  meanr_nthreads.c:31:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  hashtable/poshash.h:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  hashtable/poshash.h:124:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  hashtable/neghash.h:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  hashtable/neghash.h:131:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/meanr.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mebootSpear.Rd:88: Escaped LaTeX specials: \_
checkRd: (-1) ullwan.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) ullwan.Rd:8: Escaped LaTeX specials: \& \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Data_Correlation.txt’ ‘correlation_FDR_table.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  pspp-system-for-R.c:34:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  pspp-system-for-R.c:1291:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/memisc.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) Soybean.Rd:15: Escaped LaTeX specials: \#
checkRd: (-1) Soybean.Rd:33: Escaped LaTeX specials: \#
Found the following significant warnings:
  meminfo/src/meminfo.h:61:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrappers.c:48:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrappers.c:71:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrappers.c:93:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  wrappers.c:129:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  memuse_native.c:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  memuse_native.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  memuse_native.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  memuse_native.c:14:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/memuse.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘genuMet’
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘cycHumanBloodData.csv’ ‘cycHumanBloodDesign.csv’
  ‘cycMouseLiverProtein.txt’ ‘cycMouseLiverRNA.csv’ ‘cycSimu4h2d.csv’
  ‘cycYeastCycle.csv’ ‘example’
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
checkRd: (-1) dslp.Rd:11: Escaped LaTeX specials: \&
checkRd: (-1) cardiac.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) plvol.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) sbp.Rd:16: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘MetProc_output.pdf’ ‘sample_removed.csv’ ‘sample_retained.csv’
Found the following significant warnings:
  init.c:37:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    mev v.1.9x
    mev v.1.8x
Found the following significant warnings:
  SplineFunc.h:9:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  SplineFunc.h:17:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  SplineFunc.h:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  SplineFunc.c:84:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  SplineFunc.c:212:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  SplineFunc.c:248:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mexhaz.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    First release of mfe:
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  mgcv.c:66:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mgcv.Rcheck/00install.out’ for details.
checkRd: (-1) gam.fit3.Rd:4: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘structSSI’
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Package unavailable to check Rd xrefs: ‘DAPAR’
checkRd: (-1) IPDNa.Rd:42: Escaped LaTeX specials: \&
checkRd: (-1) fdgs.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) mice.impute.cart.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) mice.impute.rf.Rd:75: Escaped LaTeX specials: \&
checkRd: (-1) pmm.match.Rd:41: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  do_nothing.h:4:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  do_nothing.c:11:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:7:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nanotimer.c:88:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/microbenchmark.Rcheck/00install.out’ for details.
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘microcontax.data’
Package unavailable to check Rd xrefs: ‘microcontax.data’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:15:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:16:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/microsimulation.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘gurobi’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) AKMCS.Rd:215: Escaped LaTeX specials: \&
checkRd: (-1) BMP.Rd:164: Escaped LaTeX specials: \&
checkRd: (-1) IRW.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) IRW.Rd:151: Escaped LaTeX specials: \&
checkRd: (-1) MP.Rd:142: Escaped LaTeX specials: \&
checkRd: (-1) MetropolisHastings.Rd:58: Escaped LaTeX specials: \&
checkRd: (-1) SubsetSimulation.Rd:152: Escaped LaTeX specials: \&
checkRd: (-1) oscillator_d6.Rd:14: Escaped LaTeX specials: \&
Found the following significant warnings:
  /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ forming offset [176, 183] is out of the bounds [0, 176] of object ‘b’ with type ‘arma::vec’ {aka ‘arma::Col<double>’} [-Warray-bounds]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mixedClust.Rcheck/00install.out’ for details.
checkRd: (-1) SLD.Rd:20: Escaped LaTeX specials: \&
Package which this enhances but not available for checking: ‘AnalyzeFMRI’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Bug Fix
    Update Vignettes
    Function Optimizing
    New Functions
    Vignette
    Optimization
    Fix Bugs
    Add New Function
    Update Description Files
    Fix bugs
    New .R files
    Update Old .R files
checkRd: (-1) mixmeta-package.Rd:115: Escaped LaTeX specials: \&
checkRd: (-1) mixmeta.ml.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) ml.igls.Rd:62: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘mixRasch’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  libCEigen.c:84:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MixSim.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
checkRd: (-1) RTdata2.Rd:3: Escaped LaTeX specials: \#
checkRd: (-1) boot.comp.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) boot.se.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) compCDF.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) hmeEM.Rd:57: Escaped LaTeX specials: \&
checkRd: (-1) logisregmixEM.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) multmixEM.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) mvnormalmixEM.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) normalmixEM.Rd:133: Escaped LaTeX specials: \&
checkRd: (-1) normalmixEM2comp.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) poisregmixEM.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) regmixEM.Rd:67: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
checkRd: (-1) qboxplot.Rd:127: Escaped LaTeX specials: \&
checkRd: (-1) qboxplot.Rd:130: Escaped LaTeX specials: \&
checkRd: (-1) qbxp.stats.Rd:66: Escaped LaTeX specials: \&
checkRd: (-1) mi.t.test.Rd:74: Escaped LaTeX specials: \&
checkRd: (-1) qboxplot.Rd:127: Escaped LaTeX specials: \&
checkRd: (-1) qboxplot.Rd:130: Escaped LaTeX specials: \&
checkRd: (-1) qbxp.stats.Rd:66: Escaped LaTeX specials: \&
checkRd: (-1) ssize.propCI.Rd:38: Escaped LaTeX specials: \&
Found the following significant warnings:
  waveform.c:31:4: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  waveform.c:44:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mlbench.Rcheck/00install.out’ for details.
checkRd: (-1) BreastCancer.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) Ionosphere.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) Ionosphere.Rd:59: Escaped LaTeX specials: \&
checkRd: (-1) PimaIndiansDiabetes.Rd:19: Escaped LaTeX specials: \^
'LazyData' is specified without a 'data' directory
checkRd: (-1) Texture.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) AutumnLab.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) gp.list.Rd:16: Escaped LaTeX specials: \#
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘mlr3proba’
Package suggested but not available for checking: ‘distr6’
Unknown package ‘distr6’ in Rd xrefs
Package suggested but not available for checking: ‘sperrorest’
Unknown package ‘sperrorest’ in Rd xrefs
Running ‘testthat.R’ [94s/80s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > if (requireNamespace("testthat", quietly = TRUE)) {
  +   library("checkmate")
  +   library("testthat")
  +   library("mlr3spatiotempcv")
  +   test_check("mlr3spatiotempcv")
  + }
  Loading required package: mlr3
  Starting 2 test processes
  [ FAIL 1 | WARN 0 | SKIP 53 | PASS 1156 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (29)
  • On Linux (2)
  • mlr3spatial cannot be loaded (1)
  • sperrorest cannot be loaded (20)
  • until mlr3filters >= 0.5.1 in on CRAN - including as_task assertion fix (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-2-autoplot.R:276'): plot() works for 'spcv_tiles' ──────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'sperrorest'
  Backtrace:
      ▆
   1. ├─rsp$instantiate(task) at test-2-autoplot.R:276:2
   2. │ └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVTiles__instantiate(...)
   3. │   └─private$.sample(task$row_ids, task$coordinates())
   4. │     └─mlr3spatiotempcv:::.__ResamplingRepeatedSpCVTiles__.sample(...)
   5. └─base::loadNamespace(x)
   6.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   7.     └─base (local) withOneRestart(expr, restarts[[1L]])
   8.       └─base (local) doWithOneRestart(return(expr), restart)
  
  [ FAIL 1 | WARN 0 | SKIP 53 | PASS 1156 ]
  Error: Test failures
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘mlr3spatiotempcv.Rmd’ using rmarkdown
--- finished re-building ‘mlr3spatiotempcv.Rmd’

--- re-building ‘spatiotemp-viz.Rmd’ using rmarkdown
Quitting from lines 91-149 (spatiotemp-viz.Rmd) 
Error: processing vignette ‘spatiotemp-viz.Rmd’ failed with diagnostics:
there is no package called 'sperrorest'
--- failed re-building ‘spatiotemp-viz.Rmd’

SUMMARY: processing the following file failed:
  ‘spatiotemp-viz.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mlrCPO.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following files/directories:
  ‘MM2S_Predictions_Heatmap.pdf’ ‘MM2S_Predictions_StackedBarplot.pdf’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  mmap.h:104:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mmap.h:108:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mmap.h:117:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mmap.c:74:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mmap.c:286:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  types.c:4:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mmap.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘Flury’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
Package suggested but not available for checking: ‘alstructure’

Packages which this enhances but not available for checking:
  'miraculix', 'MoBPSmaps'
Running ‘testthat.R’ [3s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library(testthat)
  > library(mockthat)
  
  Attaching package: 'mockthat'
  
  The following objects are masked from 'package:testthat':
  
      local_mock, with_mock
  
  > 
  > test_check("mockthat")
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 65 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-with-mock.R:51'): can mock in package ────────────────────────
  `res` not identical to "mocked request".
  Modes: list, character
  names for target but not for current
  Length mismatch: comparison on first 1 components
  Component 1: Modes: list, character
  Component 1: names for target but not for current
  Component 1: Component 1: 1 string mismatch
  ── Failure ('test-with-mock.R:60'): can mock in package ────────────────────────
  `res` not identical to "mocked request".
  1/1 mismatches
  x[1]: "4"
  y[1]: "mocked request"
  ── Failure ('test-with-mock.R:70'): can create mock from return value ──────────
  `res` not identical to "mocked request".
  Modes: list, character
  names for target but not for current
  Length mismatch: comparison on first 1 components
  Component 1: Modes: list, character
  Component 1: names for target but not for current
  Component 1: Component 1: 1 string mismatch
  ── Failure ('test-with-mock.R:80'): can create mock from return value ──────────
  `res` not identical to "mocked request".
  Modes: list, character
  names for target but not for current
  Length mismatch: comparison on first 1 components
  Component 1: Modes: list, character
  Component 1: names for target but not for current
  Component 1: Component 1: 1 string mismatch
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 65 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
checkRd: (-1) modeest-package.Rd:150: Escaped LaTeX specials: \&
checkRd: (-1) vieu.Rd:56: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) polypes.Rd:17: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) CHECKSUCCESS.Rd:44: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    * efourier with default norm=TRUE now messages about how wrong it may be
Found the following significant warnings:
  client.c:5:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mongoc/mongoc-generation-map-private.h:29:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mongoc/mongoc-async-private.h:59:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mongoc/mongoc-async.c:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mongoc/mongoc-stream-tls-openssl-bio-private.h:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mongoc/mongoc-stream-tls-openssl-bio.c:87:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ./mongoc/mongoc-generation-map-private.h:29:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ./mongoc/mongoc-async-private.h:59:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mongoc/mongoc-generation-map.c:28:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mongoc/mongoc-generation-map.c:57:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mongoc/mongoc-timeout-private.h:28:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  mongoc/mongoc-timeout.c:56:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  kms/kms_crypto.h:38:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  kms/kms_crypto.h:41:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  kms/kms_crypto_libcrypto.c:42:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  kms/kms_crypto_libcrypto.c:48:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  kms/kms_request_str.c:33:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mongolite.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  monomvn_init.c:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  monomvn_init.c:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  rgig.c:103:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/monomvn.Rcheck/00install.out’ for details.
checkRd: (-1) bmonomvn.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) bmonomvn.Rd:149: Escaped LaTeX specials: \&
checkRd: (-1) returns.Rd:31: Escaped LaTeX specials: \$
checkRd: (-1) returns.Rd:37: Escaped LaTeX specials: \&
Found the following significant warnings:
  ordsampler.c:59:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ordsampler.c:113:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ordsampler.c:124:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ordsampler.c:386:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ordsampler.c:544:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ordsampler.c:560:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ordsampler.c:710:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ordsampler.c:1102:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sampler.c:52:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sampler.c:149:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sampler.c:158:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  sampler.c:729:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/monoreg.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: ‘mlrCPO’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Running examples in ‘move-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: thinTrackTime
> ### Title: Thinning trajectories to a specific time interval or distance.
> ### Aliases: thinTrackTime thinDistanceAlongTrack
> ###   thinTrackTime,.MoveTrackSingle-method
> ###   thinDistanceAlongTrack,.MoveTrackSingle-method
> 
> ### ** Examples
> 
> data("leroy")
> leroysub <- leroy[1:200]
> ### selecting those segments that have a time interval of 15mins pulsminus 5mins
> thintime <- thinTrackTime(leroysub, interval = as.difftime(15, units='mins'),
+                           tolerance = as.difftime(5, units='mins'))
Error in validityMethod(as(object, superClass)) : 
  Burst ids need to be one shorter than the number of coordinates since it is a segment property
Calls: thinTrackTime ... validObject -> anyStrings -> isTRUE -> validityMethod
Execution halted
Package suggested but not available for checking: ‘corpus.useR.2008.abstracts’
checkRd: (-1) Context.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:48: Escaped LaTeX specials: \&
checkRd: (-1) psyfun.boot.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) psyfun.boot.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) genotype_data.Rd:7: Escaped LaTeX specials: \_
checkRd: (-1) genotype_data.Rd:18: Escaped LaTeX specials: \_
checkRd: (-1) phenotype_data.Rd:15: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) F.huggins.estim.Rd:199: Escaped LaTeX specials: \$ \$
checkRd: (-1) F.huggins.estim.Rd:205: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:206: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:207: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:208: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:209: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:210: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:212: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:213: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:214: Escaped LaTeX specials: \$
checkRd: (-1) F.huggins.estim.Rd:215: Escaped LaTeX specials: \$
checkRd: (-1) lines.cjs.Rd:15: Escaped LaTeX specials: \$
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  combination.c:8:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  combination.c:63:21: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  product.c:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  product.c:62:17: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mrfse.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘test.txt’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in ‘mskcc.oncotree-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_tumor_types
> ### Title: Get tumor types
> ### Aliases: get_tumor_types
> 
> ### ** Examples
> 
> get_tumor_types()
Error in `resp_abort()`:
! HTTP 504 Gateway Timeout.
Backtrace:
     ▆
  1. ├─mskcc.oncotree::get_tumor_types()
  2. │ ├─base::withVisible(eval(mc, parent.frame()))
  3. │ └─base::eval(mc, parent.frame())
  4. │   └─base::eval(mc, parent.frame())
  5. ├─mskcc.oncotree (local) `<fn>`()
  6. │ ├─mskcc.oncotree:::get("/tumorTypes", version = oncotree_version)
  7. │ │ ├─base::withVisible(eval(mc, parent.frame()))
  8. │ │ └─base::eval(mc, parent.frame())
  9. │ │   └─base::eval(mc, parent.frame())
 10. │ └─mskcc.oncotree (local) `<fn>`(resource = "/tumorTypes", version = oncotree_version)
 11. │   └─... %>% httr2::resp_body_string(encoding = "UTF-8")
 12. ├─httr2::resp_body_string(., encoding = "UTF-8")
 13. │ └─httr2:::check_response(resp)
 14. │   └─httr2:::is_response(req)
 15. └─httr2::req_perform(.)
 16.   └─httr2:::resp_abort(resp, error_body(req, resp))
 17.     └─rlang::abort(...)
Execution halted
Found the following files/directories:
  ‘Acceleration.pdf’ ‘File1.pdf’ ‘Forecast.pdf’ ‘Series.pdf’
  ‘Velocity.pdf’
checkRd: (-1) ml_g.Rd:47: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) ms_sev.Rd:31: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) mkjnw.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) mkjnw.Rd:6: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  muhaz.c:1367:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mudens.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
checkRd: (-1) MultBiplotR-package.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) MultBiplotR-package.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) print.multcompLetters.Rd:20: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘rrelaxiv’
checkRd: (-1) mPhen.defineOptions.Rd:4: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) bal.Rd:156: Escaped LaTeX specials: \&
checkRd: (-1) pkb.Rd:14: Escaped LaTeX specials: \# \# \#
'LazyData' is specified without a 'data' directory
checkRd: (-1) mvr.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  ajour.c:25:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ajour.c:26:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  n1qn1_all.c:25:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  n1qn1_all.c:26:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  proj.c:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  proj.c:21:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  satur.c:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  satur.c:21:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/n1qn1.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Package which this enhances but not available for checking: ‘asreml’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    PREVIOUS (Incomplete below)
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘re2r’
Found the following significant warnings:
  namespace.c:4:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/namespace.Rcheck/00install.out’ for details.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘spatialClust’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Version (2018-01-22)
    Version  (2017-08-22)
    Version
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘gurobi’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘re2r’
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Slightly modified tests
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
BugReports field is not a suitable URL but contains an email address:
   use the Contact field instead
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
checkRd: (-1) netCoin-package.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) exportToTSPlibFormat.Rd:32: Escaped LaTeX specials: \_
checkRd: (-1) exportToTSPlibFormat.Rd:32: Escaped LaTeX specials: \_ \_
checkRd: (-1) makeNetwork.Rd:31: Escaped LaTeX specials: \_
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘fastshp’
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  network.h:17:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  network.h:18:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  network.h:19:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  network.h:20:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/networkABC.Rcheck/00install.out’ for details.
checkRd: (-1) NetworkChange.Rd:163: Escaped LaTeX specials: \&
checkRd: (-1) NetworkChangeRobust.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) NetworkStatic.Rd:142: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘map.png’ ‘maze.html’
GNU make is a SystemRequirements.
Running examples in ‘neurobase-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: boxplot.nifti
> ### Title: Boxplot of Values in an Image
> ### Aliases: boxplot.nifti boxplot.anlz
> 
> ### ** Examples
> 
> img = nifti(array(rnorm(10^3), dim = rep(10, 3)))
> mask = img > 0
> boxplot(img)
> boxplot(img, mask = mask)
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Error in plot.window(xlim = xlim, ylim = ylim, log = log, yaxs = pars$yaxs) : 
  need finite 'ylim' values
Calls: boxplot ... boxplot.default -> do.call -> <Anonymous> -> plot.window
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘neurobase.Rmd’ using rmarkdown
Quitting from lines 459-460 (neurobase.Rmd) 
Error: processing vignette ‘neurobase.Rmd’ failed with diagnostics:
need at least 2 points to select a bandwidth automatically
--- failed re-building ‘neurobase.Rmd’

--- re-building ‘nifti_basics.Rmd’ using rmarkdown
--- finished re-building ‘nifti_basics.Rmd’

--- re-building ‘simple_io.Rmd’ using rmarkdown
trying URL ‘https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz’
Content type 'application/gzip' length 21807043 bytes (20.8 MB)
==================================================
downloaded 20.8 MB

--- finished re-building ‘simple_io.Rmd’

SUMMARY: processing the following file failed:
  ‘neurobase.Rmd’

Error: Vignette re-building failed.
Execution halted
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'ANTsR', 'ITKR', 'extrantsr', 'MNITemplate', 'RAVEL', 'neurodata'
Found the following math rendering problems:
nBartlett.Rd:45-50: Undefined control sequence: \raise in ... }
      \over {{\raise0.7ex\hbox{$1$}...
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  getseed.c:41:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  getseed.c:60:17: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  getseed.c:81:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  getseed.c:83:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ngram_native.c:10:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ngram.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) graphresU.fun.Rd:72: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package which this enhances but not available for checking: ‘jpndistrict’
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:11:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nleqslv.c:4:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  nwout.c:49:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nleqslv.Rcheck/00install.out’ for details.
Found the following significant warnings:
  nlmefit.c:35:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nlme.Rcheck/00install.out’ for details.
Found the following significant warnings:
  init.c:57:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:144:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include/rxode2.h:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include/rxode2.h:304:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include/rxode2.h:306:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include/rxode2.h:308:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include/rxode2.h:309:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include/rxode2.h:317:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nlmixr2est.Rcheck/00install.out’ for details.
Found the following significant warnings:
  init.c:58:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  init.c:145:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RxODE/include/RxODE.h:49:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RxODE/include/RxODE.h:299:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RxODE/include/RxODE.h:301:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RxODE/include/RxODE.h:303:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RxODE/include/RxODE.h:304:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RxODE/include/RxODE.h:312:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nlmixr.Rcheck/00install.out’ for details.
checkRd: (-1) Dmean.Rd:62: Escaped LaTeX specials: \&
checkRd: (-1) Dvar.Rd:63: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) nltm.control.Rd:29: Escaped LaTeX specials: \$
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘INLA’
checkRd: (-1) Frobenius-nmf.Rd:141: Escaped LaTeX specials: \#
checkRd: (-1) KL-nmf.Rd:158: Escaped LaTeX specials: \#
checkRd: (-1) NMFStrategyIterative-class.Rd:69: Escaped LaTeX specials: \#
checkRd: (-1) NMFstd-class.Rd:179: Escaped LaTeX specials: \#
checkRd: (-1) nmf.Rd:755: Escaped LaTeX specials: \#
checkRd: (-1) nmf_update_KL.Rd:87: Escaped LaTeX specials: \#
checkRd: (-1) nmf_update_euclidean.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) offset-nmf.Rd:144: Escaped LaTeX specials: \#
Running examples in ‘NMF-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: profplot
> ### Title: Plotting Expression Profiles
> ### Aliases: profplot profplot.default
> ### Keywords: aplot
> 
> ### ** Examples
> 
> ## Don't show: 
> # roxygen generated flag
> options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
> ## End(Don't show)
> 
> # create a random target matrix
> v <- rmatrix(35, 10)
> 
> # fit a single NMF model
> res <- nmf(v, 3)
> profplot(res)
> 
> # fit a multi-run NMF model
> res2 <- nmf(v, 3, nrun=2)
# NOTE - CRAN check detected: limiting maximum number of cores [2/32]
> # ordering according to first profile
> profplot(res2, Colv=1) # increasing
> 
> # draw a profile correlation plot: this show how the basis components are
> # returned in an unpredictable order
> profplot(res, res2)
Error in col["alpha", ] <- as.character(as.hexmode(alpha)) : 
  incorrect number of subscripts on matrix
Calls: profplot ... <Anonymous> -> .set.list.defaults -> expand_list -> alphacol
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  veclib.h:302:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nncc.Rcheck/00install.out’ for details.
Found the following significant warnings:
  geodesic.c:57:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nngeo.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Other ideas
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘mlrCPO’
Error(s) in re-building vignettes:
  ...
--- re-building ‘nntrf.Rmd’ using rmarkdown
--- finished re-building ‘nntrf.Rmd’

--- re-building ‘nntrf_regresion.Rmd’ using rmarkdown
Quitting from lines 21-25 (nntrf_regresion.Rmd) 
Error: processing vignette ‘nntrf_regresion.Rmd’ failed with diagnostics:
there is no package called 'mlrCPO'
--- failed re-building ‘nntrf_regresion.Rmd’

--- re-building ‘nntrf_tuning.Rmd’ using rmarkdown
Quitting from lines 20-24 (nntrf_tuning.Rmd) 
Error: processing vignette ‘nntrf_tuning.Rmd’ failed with diagnostics:
there is no package called 'mlrCPO'
--- failed re-building ‘nntrf_tuning.Rmd’

SUMMARY: processing the following files failed:
  ‘nntrf_regresion.Rmd’ ‘nntrf_tuning.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘hurricaneexposuredata’
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) simulatePop.Rd:43: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    norgeo (development version)
'LazyData' is specified without a 'data' directory
Found the following significant warnings:
  init.c:16:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/norm.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
checkRd: (-1) prepareplot.Rd:64: Escaped LaTeX specials: \#
checkRd: (-1) prepareplot.Rd:68: Escaped LaTeX specials: \#
checkRd: (-1) nppbib.Rd:28: Escaped LaTeX specials: \#
Running ‘testthat.R’ [33s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > #' Copyright(c) 2017-2020 R. Mark Sharp
  > #' This file is part of nprcgenekeepr
  > library(testthat)
  > library(nprcgenekeepr)
  > test_check("nprcgenekeepr")
  15 15 
  15 15 
  [ FAIL 1 | WARN 3 | SKIP 19 | PASS 747 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (1)
  • Sys.info()[names(Sys.info()) == "user"] == "msharp" is not TRUE (18)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_getDatedFilename.R:12'): getDatedFilename form correctly dated file name ──
  stri_sub(getDatedFilename("testName"), 21) not equal to "testName".
  1/1 mismatches
  x[1]: "46966_testName"
  y[1]: "testName"
  
  [ FAIL 1 | WARN 3 | SKIP 19 | PASS 747 ]
  Error: Test failures
  Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Error(s) in re-building vignettes:
  ...
--- re-building ‘bhav.Rmd’ using rmarkdown
--- finished re-building ‘bhav.Rmd’

--- re-building ‘bhavfos.Rmd’ using rmarkdown
--- finished re-building ‘bhavfos.Rmd’

--- re-building ‘bhavpr.Rmd’ using rmarkdown
--- finished re-building ‘bhavpr.Rmd’

--- re-building ‘bhavs.Rmd’ using rmarkdown
--- finished re-building ‘bhavs.Rmd’

--- re-building ‘bhavtoday.Rmd’ using rmarkdown
--- finished re-building ‘bhavtoday.Rmd’

--- re-building ‘dailydata.Rmd’ using rmarkdown
--- finished re-building ‘dailydata.Rmd’

--- re-building ‘daytomonth.Rmd’ using rmarkdown
--- finished re-building ‘daytomonth.Rmd’

--- re-building ‘daytoweek.Rmd’ using rmarkdown
--- finished re-building ‘daytoweek.Rmd’

--- re-building ‘fdii.Rmd’ using rmarkdown
--- finished re-building ‘fdii.Rmd’

--- re-building ‘fobhav.Rmd’ using rmarkdown
trying URL ‘https://archives.nseindia.com/content/historical/DERIVATIVES/2021/JUL/fo01JUL2021bhav.csv.zip’
Content type 'application/zip' length 593613 bytes (579 KB)
==================================================
downloaded 579 KB

--- finished re-building ‘fobhav.Rmd’

--- re-building ‘fobhavtoday.Rmd’ using rmarkdown
--- finished re-building ‘fobhavtoday.Rmd’

--- re-building ‘nseindex.Rmd’ using rmarkdown
Quitting from lines 22-24 (nseindex.Rmd) 
Error: processing vignette ‘nseindex.Rmd’ failed with diagnostics:
cannot open the connection to ‘https://www1.nseindia.com/homepage/Indices1.json’
--- failed re-building ‘nseindex.Rmd’

--- re-building ‘nseipo.Rmd’ using rmarkdown
--- finished re-building ‘nseipo.Rmd’

--- re-building ‘nselive.Rmd’ using rmarkdown
--- finished re-building ‘nselive.Rmd’

--- re-building ‘nseopen.Rmd’ using rmarkdown
--- finished re-building ‘nseopen.Rmd’

--- re-building ‘nsetree.Rmd’ using rmarkdown
--- finished re-building ‘nsetree.Rmd’

SUMMARY: processing the following file failed:
  ‘nseindex.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  vadr.h:55:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  promises.h:5:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  dots.c:5:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  promises.c:93:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  vadr.c:22:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nseval.Rcheck/00install.out’ for details.
checkRd: (-1) Ardechedata.Rd:18: Escaped LaTeX specials: \_
checkRd: (-1) nsRFA-package.Rd:231: Escaped LaTeX specials: \&
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘morse’
Found the following significant warnings:
  gutsRedIT.c:34:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gutsRedIT.c:58:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gutsRedSD.c:36:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  gutsRedSD.c:64:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  odeGUTS_init.c:5:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  odeGUTS_init.c:6:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/odeGUTS.Rcheck/00install.out’ for details.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
No news entries found.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: ‘cmdstanr’
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Older changes
    trunk
GNU make is a SystemRequirements.
Package suggested but not available for checking: ‘openNLPmodels.en’
Found the following significant warnings:
  utils.h:3:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  error.c:13:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  info.c:14:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  info.c:36:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keygen.c:72:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  keygen.c:93:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
  ssl.c:86:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/openssl.Rcheck/00install.out’ for details.
Problems with news in ‘NEWS.md’:
No news entries found.
Package suggested but not available for checking: ‘gurobi’
'LazyData' is specified without a 'data' directory
Found the following files/directories:
  ‘Graph_layout_Doptbd_trtE’
Malformed Title field: should not end in a period.