Running ‘testthat.R’ [13s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(seeker)
  > 
  > test_check('seeker')
  qs v0.25.4.
  reading in files with read_tsv
  1 2 
  transcripts missing from tx2gene: 116471
  summarizing abundance
  summarizing counts
  summarizing length
  [ FAIL 2 | WARN 1 | SKIP 17 | PASS 31 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (17)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-array-utils.R:97:5): getNaiveEsetAe unsupported ───────────────
  `getNaiveEsetAe(study, outputDir, file.path(outputDir, "raw"))` threw an unexpected error.
  Message: lexical error: invalid char in json text.
                                         <!doctype html>  <!-- paulirish
                       (right here) ------^
  
  Class:   simpleError/error/condition
  Backtrace:
       ▆
    1. ├─testthat::expect_error(...) at test-array-utils.R:97:4
    2. │ └─testthat:::expect_condition_matching(...)
    3. │   └─testthat:::quasi_capture(...)
    4. │     ├─testthat (local) .capture(...)
    5. │     │ └─base::withCallingHandlers(...)
    6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. └─seeker:::getNaiveEsetAe(...)
    8.   └─seeker:::getAeMetadata(study, "experiments")
    9.     └─jsonlite::fromJSON(rawToChar(raw$content))
   10.       └─jsonlite:::parse_and_simplify(...)
   11.         └─jsonlite:::parseJSON(txt, bigint_as_char)
   12.           └─jsonlite:::parse_string(txt, bigint_as_char)
  ── Error (test-array-utils.R:129:3): getAeMetadata ─────────────────────────────
  Error: lexical error: invalid char in json text.
                                         <!doctype html>  <!-- paulirish
                       (right here) ------^
  
  Backtrace:
      ▆
   1. └─seeker:::getAeMetadata(study, type = "experiments") at test-array-utils.R:129:2
   2.   └─jsonlite::fromJSON(rawToChar(raw$content))
   3.     └─jsonlite:::parse_and_simplify(...)
   4.       └─jsonlite:::parseJSON(txt, bigint_as_char)
   5.         └─jsonlite:::parse_string(txt, bigint_as_char)
  
  [ FAIL 2 | WARN 1 | SKIP 17 | PASS 31 ]
  Error: Test failures
  Execution halted