Running ‘testthat.R’ [17s/96s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(seeker)
  > 
  > test_check('seeker')
  qs v0.25.4.
  trying URL 'https://www.ebi.ac.uk/arrayexpress/files/A-MEXP-724/A-MEXP-724.adf.txt'
  Content type 'text/plain' length 5928030 bytes (5.7 MB)
  ==================================================
  downloaded 5.7 MB
  
  trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.sdrf.txt'
  Content type 'text/plain' length 4803 bytes
  ==================================================
  downloaded 4803 bytes
  
  trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.idf.txt'
  Content type 'text/plain' length 3832 bytes
  ==================================================
  downloaded 3832 bytes
  
  Copying raw data files
  
  trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.raw.1.zip'
  Content type 'application/zip' length 60875754 bytes (58.1 MB)
  ======================
  downloaded 25.8 MB
  
  Error in download.file(url, filedest, mode = "wb") : 
    download from 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.raw.1.zip' failed
  reading in files with read_tsv
  1 2 
  transcripts missing from tx2gene: 116471
  summarizing abundance
  summarizing counts
  summarizing length
  [ FAIL 1 | WARN 4 | SKIP 17 | PASS 35 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (17)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-array-utils.R:104:3): getNaiveEsetAe unsupported ──────────────
  `filesObs` (`actual`) not equal to `filesExp` (`expected`).
  
      actual                  | expected                  
  [1] "A-MEXP-724.adf.txt"    | "A-MEXP-724.adf.txt"   [1]
  [2] "E-MEXP-2755.idf.txt"   | "E-MEXP-2755.idf.txt"  [2]
  [3] "E-MEXP-2755.raw.1.zip" -                           
  [4] "E-MEXP-2755.sdrf.txt"  | "E-MEXP-2755.sdrf.txt" [3]
  
  [ FAIL 1 | WARN 4 | SKIP 17 | PASS 35 ]
  Error: Test failures
  Execution halted