Running 'test-all.R' [22s/239s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  > test_check("treeman")
  Loading required package: treeman
  [4] in treelst is not a TreeMan object
  These nodes are invalid:
  n1, n3, n5
   
  These nodes are invalid:
  n1
   
  Root node `x` not in ndlst
   
  These nodes are invalid:
  n9
   
  These nodes are invalid:
  n8, n9
   
  Formal class 'TreeMan' [package "treeman"] with 17 slots
    ..@ ndlst       :List of 19
    ..@ nds         : chr [1:9] "n1" "n2" "n3" "n4" ...
    ..@ nnds        : int 9
    ..@ tips        : chr [1:10] "t1" "t10" "t2" "t3" ...
    ..@ ntips       : int 10
    ..@ all         : chr [1:19] "n1" "n2" "n3" "n4" ...
    ..@ nall        : int 19
    ..@ pd          : num 8.8
    ..@ wspn        : logi TRUE
    ..@ wtxnyms     : logi FALSE
    ..@ ply         : logi FALSE
    ..@ updtd       : logi TRUE
    ..@ ndmtrx      : NULL
    ..@ tinds       : int [1:10] 10 11 12 13 14 15 16 17 18 19
    ..@ prinds      : num [1:19] 1 1 2 1 4 3 6 3 8 9 ...
    ..@ root        : chr "n1"
    ..@ othr_slt_nms: logi(0) 
  [1] "TreeMan Object of [10] tips"
  Tree (TreeMan Object):
    + 10 tips
    + 9 internal nodes
    + Binary
    + PD 9.19
    + Root node is "n1"
  Node (tip node):
    + ID: "t1"
    + prid: "n3"
    + spn: 0.34
    + predist: 1.8
    + pd: 0
  Tree (TreeMan Object):
    + 10 tips
    + 9 internal nodes
    + Binary
    + PD 10.6
    + Root node is "n1"
    + With additional node slots:
      [binary_val]
  Tree (TreeMan Object):
    + 10 tips
    + 9 internal nodes
    + Binary
    + PD 8.32
    + Root node is "n1"
  [1] "TreeMen Object of [3] trees"
  TreeMen Object of [3] trees---- Connection failed: trying again in [2s]----
  ---- Connection failed: trying again in [4s]----
  ---- Connection failed: trying again in [8s]----
  ---- Connection failed: trying again in [16s]----
  ---- Connection failed: trying again in [32s]----
  ---- Connection failed: trying again in [2s]----
  ---- Connection failed: trying again in [4s]----
  ---- Connection failed: trying again in [8s]----
  ---- Connection failed: trying again in [16s]----
  ---- Connection failed: trying again in [32s]----
  ---- Connection failed: trying again in [2s]----
  ---- Connection failed: trying again in [4s]----
  ---- Connection failed: trying again in [8s]----
  ---- Connection failed: trying again in [16s]----
  ---- Connection failed: trying again in [32s]----
  [ FAIL 2 | WARN 3 | SKIP 9 | PASS 244 ]
  
  == Skipped tests ===============================================================
  * empty test (9)
  
  == Failed tests ================================================================
  -- Error (test_server_methods.R:53:3): taxaResolve([basic]) works --------------
  Error in `complete.cases(res)`: no input has determined the number of cases
  Backtrace:
      x
   1. \-stats::complete.cases(res) at test_server_methods.R:53:2
  -- Failure (test_server_methods.R:71:3): searchTxnyms([basic]) works -----------
  nd_labels[["p_Unknown_homo_sp"]] == "Homininae" is not TRUE
  
  `actual`:       
  `expected`: TRUE
  
  [ FAIL 2 | WARN 3 | SKIP 9 | PASS 244 ]
  Error: Test failures
  Execution halted