Error(s) in re-building vignettes:
--- re-building 'An_introduction_to_the_PopGenome_package.Rnw' using Sweave
--- finished re-building 'An_introduction_to_the_PopGenome_package.Rnw'

--- re-building 'Integration_of_new_Methods.Rnw' using Sweave
--- finished re-building 'Integration_of_new_Methods.Rnw'

--- re-building 'Whole_genome_analyses_using_VCF_files.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "Whole_genome_analyses_using_VCF_files.tex" --max-iterations=20 -I "D:/RCompile/recent/R-4.1.3/share/texmf/tex/latex" -I "D:/RCompile/recent/R-4.1.3/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'Whole_genome_analyses_using_VCF_files.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'Whole_genome_analyses_using_VCF_files.pdf' for vignette with name 'Whole_genome_analyses_using_VCF_files' and engine 'utils::Sweave'. The following files exist in working directory 'd:\RCompile\CRANpkg\local\4.1\PopGenome.Rcheck\vign_test\PopGenome\vignettes': '2Lslide.pdf' (80615 bytes), 'An_introduction_to_the_PopGenome_package.Rnw' (34069 bytes), 'An_introduction_to_the_PopGenome_package.aux' (2156 bytes), 'An_introduction_to_the_PopGenome_package.log' (48911 bytes), 'An_introduction_to_the_PopGenome_package.pdf' (289511 bytes), 'An_introduction_to_the_PopGenome_package.tex' (34921 bytes), 'An_introduction_to_the_PopGenome_package.toc' (1615 bytes), 'GenesTaj.pdf' (21727 bytes), 'Integration_of_new_Methods-concordance.tex' (109 bytes), 'Integration_of_new_Methods.Rnw' (8069 bytes), 'Integration_of_new_Methods.aux' (1048 bytes), 'Integration_of_new_Methods.log' (23359 bytes), 'Integration_of_new_Methods.out' (64 bytes), 'Integration_of_new_Methods.pdf' (244612 bytes), 'Integration_of_new_Methods.tex' (8319 bytes), 'PopGenomeClasses.pdf' (25886 bytes), 'SFS.pdf' (91981 bytes), 'Whole_genome_analyses_using_VCF_files.Rnw' (40919 bytes), 'Whole_genome_analyses_using_VCF_files.tex' (41761 bytes), 'XXX.pdf' (35127 bytes), 'XYZ.pdf' (35183 bytes), 'nucFST.pdf' (66444 bytes), 'nucFSTvsAll.pdf' (82112 bytes)
--- failed re-building 'Whole_genome_analyses_using_VCF_files.Rnw'

SUMMARY: processing the following file failed:
  'Whole_genome_analyses_using_VCF_files.Rnw'

Error: Vignette re-building failed.
Execution halted