Running ‘testthat.R’ [41s/59s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(fido)
  
  Attaching package: 'fido'
  
  The following objects are masked from 'package:stats':
  
      coef, predict
  
  The following objects are masked from 'package:base':
  
      as.list, print, summary
  
  > 
  > #Sys.setenv(KMP_DUPLICATE_LIB_OK="TRUE")
  > test_check("fido")
    [1] -0.344781134  1.947378339 -2.694686348 -0.653034901  2.091895135
    [6] -1.101306712  0.502582740 -0.121456885  1.160649123  0.732673172
   [11]  0.940482436  0.253433121 -1.866444171 -0.798739080 -1.429565476
   [16] -0.385744595 -0.146567469  1.203751791  0.036398691  1.267231503
   [21] -0.080196227 -0.653356698 -3.578599629 -0.661714515 -0.351697619
   [26] -0.721679317  1.050162730 -0.201699470 -0.007283753 -1.122269151
   [31]  0.976173337  0.185749734 -1.636800821  0.410877144 -0.523330106
   [36] -0.963374864  1.467880505 -0.781139938 -0.949919813  0.006142361
   [41] -0.793176370 -1.350585237  0.741335107 -0.134319949  1.182296810
   [46] -0.351468739 -0.232941239 -0.607474093  0.426708609  1.578043362
   [51]  0.394305221  0.968547689  0.888650182 -0.814267499  0.356551656
   [56] -0.236093776  1.400807518 -1.802453824  0.800202529  0.009100970
   [61]  1.525286025  0.416187055  1.887864316  0.690899825  1.452107159
   [66]  0.315136070  0.249128163 -0.507834721  0.533490151  1.676106504
   [71] -0.681430787  0.445851910  0.976440504 -0.131015391 -1.209720665
   [76] -0.555030265 -1.868485440  1.040311605  0.292056666 -0.098362700
   [81]  0.838296783 -0.045510289 -0.682502069  0.241175186 -1.132486947
   [86]  1.197644631  0.411182627 -0.768352661  0.133781964  0.539281822
   [91] -0.449022423  0.934113499 -0.709825038 -0.779370216 -0.081143695
   [96] -1.618292261 -1.637603651 -0.381400441 -0.887565732 -0.608636329
  $data
  # A tibble: 16 × 9
     Parameter coord  covariate     val .lower .upper .width .point .interval
     <chr>     <fct>  <fct>       <dbl>  <dbl>  <dbl>  <dbl> <chr>  <chr>    
   1 Lambda    clr_c1 x1         4.59    4.34   4.85    0.5  mean   qi       
   2 Lambda    clr_c1 x2        -1.49   -1.78  -1.19    0.5  mean   qi       
   3 Lambda    clr_c2 x1        -6.50   -7.04  -5.91    0.5  mean   qi       
   4 Lambda    clr_c2 x2        -0.0101 -0.469  0.441   0.5  mean   qi       
   5 Lambda    clr_c1 x1         4.59    4.11   5.08    0.8  mean   qi       
   6 Lambda    clr_c1 x2        -1.49   -2.07  -0.946   0.8  mean   qi       
   7 Lambda    clr_c2 x1        -6.50   -7.58  -5.43    0.8  mean   qi       
   8 Lambda    clr_c2 x2        -0.0101 -0.880  0.857   0.8  mean   qi       
   9 Lambda    clr_c1 x1         4.59    3.83   5.30    0.95 mean   qi       
  10 Lambda    clr_c1 x2        -1.49   -2.37  -0.549   0.95 mean   qi       
  11 Lambda    clr_c2 x1        -6.50   -8.23  -4.89    0.95 mean   qi       
  12 Lambda    clr_c2 x2        -0.0101 -1.35   1.38    0.95 mean   qi       
  13 Lambda    clr_c1 x1         4.59    3.53   5.61    0.99 mean   qi       
  14 Lambda    clr_c1 x2        -1.49   -2.76  -0.238   0.99 mean   qi       
  15 Lambda    clr_c2 x1        -6.50   -8.92  -4.41    0.99 mean   qi       
  16 Lambda    clr_c2 x2        -0.0101 -1.69   1.88    0.99 mean   qi       
  
  $layers
  $layers[[1]]
  geom_interval: orientation = NA, interval_size_range = c(1, 6), interval_size_domain = c(1, 6), na.rm = FALSE
  stat_identity: na.rm = FALSE
  position_identity 
  
  $layers[[2]]
  geom_point: na.rm = FALSE
  stat_identity: na.rm = FALSE
  position_identity 
  
  
  $scales
  <ggproto object: Class ScalesList, gg>
      add: function
      clone: function
      find: function
      get_scales: function
      has_scale: function
      input: function
      n: function
      non_position_scales: function
      scales: list
      super:  <ggproto object: Class ScalesList, gg>
  
  $mapping
  Aesthetic mapping: 
  * `x`    -> `.data$val`
  * `y`    -> `.data$coord`
  * `xmin` -> `.lower`
  * `xmax` -> `.upper`
  
  $theme
  List of 93
   $ line                      :List of 6
    ..$ colour       : chr "black"
    ..$ size         : num 0.5
    ..$ linetype     : num 1
    ..$ lineend      : chr "butt"
    ..$ arrow        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_line" "element"
   $ rect                      :List of 5
    ..$ fill         : chr "white"
    ..$ colour       : chr "black"
    ..$ size         : num 0.5
    ..$ linetype     : num 1
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_rect" "element"
   $ text                      :List of 11
    ..$ family       : chr ""
    ..$ face         : chr "plain"
    ..$ colour       : chr "black"
    ..$ size         : num 11
    ..$ hjust        : num 0.5
    ..$ vjust        : num 0.5
    ..$ angle        : num 0
    ..$ lineheight   : num 0.9
    ..$ margin       : 'margin' num [1:4] 0points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ title                     : NULL
   $ aspect.ratio              : NULL
   $ axis.title                : NULL
   $ axis.title.x              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 2.75points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.title.x.top          :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 0
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 2.75points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.title.x.bottom       : NULL
   $ axis.title.y              : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ axis.title.y.left         : NULL
   $ axis.title.y.right        :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 0
    ..$ angle        : num -90
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 0points 2.75points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text                 :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : chr "grey30"
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.x               :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 2.2points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.x.top           :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 0
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 2.2points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.x.bottom        : NULL
   $ axis.text.y               :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 1
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 2.2points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.y.left          : NULL
   $ axis.text.y.right         :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 0
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 0points 2.2points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.ticks                : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ axis.ticks.x              : NULL
   $ axis.ticks.x.top          : NULL
   $ axis.ticks.x.bottom       : NULL
   $ axis.ticks.y              : NULL
   $ axis.ticks.y.left         : NULL
   $ axis.ticks.y.right        : NULL
   $ axis.ticks.length         : 'simpleUnit' num 2.75points
    ..- attr(*, "unit")= int 8
   $ axis.ticks.length.x       : NULL
   $ axis.ticks.length.x.top   : NULL
   $ axis.ticks.length.x.bottom: NULL
   $ axis.ticks.length.y       : NULL
   $ axis.ticks.length.y.left  : NULL
   $ axis.ticks.length.y.right : NULL
   $ axis.line                 : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ axis.line.x               : NULL
   $ axis.line.x.top           : NULL
   $ axis.line.x.bottom        : NULL
   $ axis.line.y               : NULL
   $ axis.line.y.left          : NULL
   $ axis.line.y.right         : NULL
   $ legend.background         : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ legend.margin             : 'margin' num [1:4] 5.5points 5.5points 5.5points 5.5points
    ..- attr(*, "unit")= int 8
   $ legend.spacing            : 'simpleUnit' num 11points
    ..- attr(*, "unit")= int 8
   $ legend.spacing.x          : NULL
   $ legend.spacing.y          : NULL
   $ legend.key                : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ legend.key.size           : 'simpleUnit' num 1.2lines
    ..- attr(*, "unit")= int 3
   $ legend.key.height         : NULL
   $ legend.key.width          : NULL
   $ legend.text               :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ legend.text.align         : NULL
   $ legend.title              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 0
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ legend.title.align        : NULL
   $ legend.position           : chr "right"
   $ legend.direction          : NULL
   $ legend.justification      : chr "center"
   $ legend.box                : NULL
   $ legend.box.just           : NULL
   $ legend.box.margin         : 'margin' num [1:4] 0cm 0cm 0cm 0cm
    ..- attr(*, "unit")= int 1
   $ legend.box.background     : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ legend.box.spacing        : 'simpleUnit' num 11points
    ..- attr(*, "unit")= int 8
   $ panel.background          : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ panel.border              : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ panel.spacing             : 'simpleUnit' num 5.5points
    ..- attr(*, "unit")= int 8
   $ panel.spacing.x           : NULL
   $ panel.spacing.y           : NULL
   $ panel.grid                :List of 6
    ..$ colour       : chr "grey92"
    ..$ size         : NULL
    ..$ linetype     : NULL
    ..$ lineend      : NULL
    ..$ arrow        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_line" "element"
   $ panel.grid.major          : NULL
   $ panel.grid.minor          :List of 6
    ..$ colour       : NULL
    ..$ size         : 'rel' num 0.5
    ..$ linetype     : NULL
    ..$ lineend      : NULL
    ..$ arrow        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_line" "element"
   $ panel.grid.major.x        : NULL
   $ panel.grid.major.y        : NULL
   $ panel.grid.minor.x        : NULL
   $ panel.grid.minor.y        : NULL
   $ panel.ontop               : logi FALSE
   $ plot.background           : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ plot.title                :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 1.2
    ..$ hjust        : num 0
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 5.5points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.title.position       : chr "panel"
   $ plot.subtitle             :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 0
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 5.5points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.caption              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : num 1
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 5.5points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.caption.position     : chr "panel"
   $ plot.tag                  :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 1.2
    ..$ hjust        : num 0.5
    ..$ vjust        : num 0.5
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.tag.position         : chr "topleft"
   $ plot.margin               : 'margin' num [1:4] 5.5points 5.5points 5.5points 5.5points
    ..- attr(*, "unit")= int 8
   $ strip.background          : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ strip.background.x        : NULL
   $ strip.background.y        : NULL
   $ strip.placement           : chr "inside"
   $ strip.text                :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : chr "grey10"
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 4.4points 4.4points 4.4points 4.4points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ strip.text.x              : NULL
   $ strip.text.y              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : num -90
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ strip.switch.pad.grid     : 'simpleUnit' num 2.75points
    ..- attr(*, "unit")= int 8
   $ strip.switch.pad.wrap     : 'simpleUnit' num 2.75points
    ..- attr(*, "unit")= int 8
   $ strip.text.y.left         :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : num 90
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   - attr(*, "class")= chr [1:2] "theme" "gg"
   - attr(*, "complete")= logi TRUE
   - attr(*, "validate")= logi TRUE
  
  $coordinates
  <ggproto object: Class CoordCartesian, Coord, gg>
      aspect: function
      backtransform_range: function
      clip: on
      default: TRUE
      distance: function
      expand: TRUE
      is_free: function
      is_linear: function
      labels: function
      limits: list
      modify_scales: function
      range: function
      render_axis_h: function
      render_axis_v: function
      render_bg: function
      render_fg: function
      setup_data: function
      setup_layout: function
      setup_panel_guides: function
      setup_panel_params: function
      setup_params: function
      train_panel_guides: function
      transform: function
      super:  <ggproto object: Class CoordCartesian, Coord, gg>
  
  $facet
  <ggproto object: Class FacetGrid, Facet, gg>
      compute_layout: function
      draw_back: function
      draw_front: function
      draw_labels: function
      draw_panels: function
      finish_data: function
      init_scales: function
      map_data: function
      params: list
      setup_data: function
      setup_params: function
      shrink: TRUE
      train_scales: function
      vars: function
      super:  <ggproto object: Class FacetGrid, Facet, gg>
  
  $plot_env
  <environment: 0x55cddcfa6a70>
  
  $labels
  $labels$x
  [1] "Log-Ratio Value"
  
  $labels$y
  [1] "coord"
  
  $labels$xmin
  [1] ".lower"
  
  $labels$xmax
  [1] ".upper"
  
  
  $guides
  $guides$colour
  $title
  [1] "Credible\nInterval"
  
  $title.position
  NULL
  
  $title.theme
  NULL
  
  $title.hjust
  NULL
  
  $title.vjust
  NULL
  
  $label
  [1] TRUE
  
  $label.position
  NULL
  
  $label.theme
  NULL
  
  $label.hjust
  NULL
  
  $label.vjust
  NULL
  
  $keywidth
  NULL
  
  $keyheight
  NULL
  
  $direction
  NULL
  
  $override.aes
  named list()
  
  $nrow
  NULL
  
  $ncol
  NULL
  
  $byrow
  [1] FALSE
  
  $reverse
  [1] FALSE
  
  $order
  [1] 0
  
  $available_aes
  [1] "any"
  
  $name
  [1] "legend"
  
  attr(,"class")
  [1] "guide"  "legend"
  
  
  attr(,"class")
  [1] "gg"     "ggplot"
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 102 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-pibble.R:60:3): optim sylvester gets same result ──────────────
  plain > sylv not equal to TRUE.
  1 element mismatch
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 102 ]
  Error: Test failures
  Execution halted