Error(s) in re-building vignettes:
  ...
--- re-building ‘QC.Rmd’ using rmarkdown
`geom_smooth()` using method = 'gam' and formula 'y ~ s(x, bs = "cs")'
Warning: Removed 322 rows containing non-finite values (stat_smooth).
Warning: Removed 322 rows containing missing values (geom_point).
`geom_smooth()` using method = 'gam' and formula 'y ~ s(x, bs = "cs")'
Warning: Removed 322 rows containing non-finite values (stat_smooth).
Warning: Removed 322 rows containing missing values (geom_point).
`geom_smooth()` using method = 'gam' and formula 'y ~ s(x, bs = "cs")'
Warning: Removed 9 rows containing non-finite values (stat_smooth).
Warning: Removed 9 rows containing missing values (geom_point).
`geom_smooth()` using method = 'gam' and formula 'y ~ s(x, bs = "cs")'
Warning: Removed 18 rows containing non-finite values (stat_smooth).
Warning: Removed 18 rows containing missing values (geom_point).
Warning: Removed 336 rows containing missing values (geom_point).
Warning: Removed 336 rows containing missing values (geom_text).
--- finished re-building ‘QC.Rmd’

--- re-building ‘ana-methods.Rmd’ using rmarkdown
Quitting from lines 142-156 (ana-methods.Rmd) 
Error: processing vignette ‘ana-methods.Rmd’ failed with diagnostics:
there is no package called 'ggbeeswarm'
--- failed re-building ‘ana-methods.Rmd’

--- re-building ‘clustering.Rmd’ using rmarkdown
Quitting from lines 163-167 (clustering.Rmd) 
Error: processing vignette ‘clustering.Rmd’ failed with diagnostics:
clusterTracks: please install the 'uwot' package to use this functionality!
--- failed re-building ‘clustering.Rmd’

--- re-building ‘data-QC.Rmd’ using rmarkdown
--- finished re-building ‘data-QC.Rmd’

--- re-building ‘reading-converting-data.Rmd’ using rmarkdown
--- finished re-building ‘reading-converting-data.Rmd’

--- re-building ‘simulation.Rmd’ using rmarkdown
--- finished re-building ‘simulation.Rmd’

SUMMARY: processing the following files failed:
  ‘ana-methods.Rmd’ ‘clustering.Rmd’

Error: Vignette re-building failed.
Execution halted