Running ‘testthat.R’ [41s/61s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(fido)
  
  Attaching package: 'fido'
  
  The following objects are masked from 'package:stats':
  
      coef, predict
  
  The following objects are masked from 'package:base':
  
      as.list, print, summary
  
  > 
  > #Sys.setenv(KMP_DUPLICATE_LIB_OK="TRUE")
  > test_check("fido")
    [1]  0.26738311 -1.33899224 -1.95254265 -0.39756655  1.45751012  0.47103711
    [7] -0.07330334 -0.67012098  0.47146609  0.07345265  0.92503361 -0.48350069
   [13]  0.51575599  1.72057504  0.35913823 -0.93582313  0.08997179 -1.25088705
   [19]  2.09533524  1.65877854  1.15003740 -0.41454491  0.09000240 -0.64545842
   [25] -0.81255099 -1.26856240 -0.09077535 -0.83598965 -0.33241904 -1.69035423
   [31]  0.32998255 -0.99489425 -0.20686376 -1.19680237  1.03943725  0.43274564
   [37]  0.91756540 -1.39098685  0.19734837  0.18875884  1.04465353  0.82502785
   [43]  0.74184491  0.65619155  0.96359744  0.03777181 -0.37204029  0.68051191
   [49]  1.79517888  1.75673956  0.35132040  0.04997461  0.98178461  0.92701292
   [55] -0.51789541 -2.00438751 -1.16109241  0.15551298 -1.03084075  1.51301713
   [61] -0.58127074 -0.83805808 -0.31858620  0.65248905  0.40097135 -0.72021206
   [67] -0.69376655 -0.86873594 -0.44130140 -1.87776137 -0.89115386  0.17730768
   [73] -1.30531872  1.83828749  0.93461013 -0.17374887  0.11519000  1.22191602
   [79]  0.30440721  1.50324937 -0.11819094 -1.29300475 -0.49011831  1.88132747
   [85]  0.27903116 -1.90620429  0.91410234 -0.96518859 -1.80668953 -0.03680587
   [91]  0.74472691  1.51204049 -0.56321108 -1.90504551 -0.15591045 -0.54662247
   [97]  0.93615588 -0.87247147 -3.33565054  0.13041702
  $data
  # A tibble: 16 × 9
     Parameter coord  covariate     val .lower .upper .width .point .interval
     <chr>     <fct>  <fct>       <dbl>  <dbl>  <dbl>  <dbl> <chr>  <chr>    
   1 Lambda    clr_c1 x1         4.59    4.34   4.85    0.5  mean   qi       
   2 Lambda    clr_c1 x2        -1.49   -1.78  -1.19    0.5  mean   qi       
   3 Lambda    clr_c2 x1        -6.50   -7.04  -5.91    0.5  mean   qi       
   4 Lambda    clr_c2 x2        -0.0101 -0.469  0.441   0.5  mean   qi       
   5 Lambda    clr_c1 x1         4.59    4.11   5.08    0.8  mean   qi       
   6 Lambda    clr_c1 x2        -1.49   -2.07  -0.946   0.8  mean   qi       
   7 Lambda    clr_c2 x1        -6.50   -7.58  -5.43    0.8  mean   qi       
   8 Lambda    clr_c2 x2        -0.0101 -0.880  0.857   0.8  mean   qi       
   9 Lambda    clr_c1 x1         4.59    3.83   5.30    0.95 mean   qi       
  10 Lambda    clr_c1 x2        -1.49   -2.37  -0.549   0.95 mean   qi       
  11 Lambda    clr_c2 x1        -6.50   -8.23  -4.89    0.95 mean   qi       
  12 Lambda    clr_c2 x2        -0.0101 -1.35   1.38    0.95 mean   qi       
  13 Lambda    clr_c1 x1         4.59    3.53   5.61    0.99 mean   qi       
  14 Lambda    clr_c1 x2        -1.49   -2.76  -0.238   0.99 mean   qi       
  15 Lambda    clr_c2 x1        -6.50   -8.92  -4.41    0.99 mean   qi       
  16 Lambda    clr_c2 x2        -0.0101 -1.69   1.88    0.99 mean   qi       
  
  $layers
  $layers[[1]]
  geom_interval: orientation = NA, interval_size_range = c(1, 6), interval_size_domain = c(1, 6), na.rm = FALSE
  stat_identity: na.rm = FALSE
  position_identity 
  
  $layers[[2]]
  geom_point: na.rm = FALSE
  stat_identity: na.rm = FALSE
  position_identity 
  
  
  $scales
  <ggproto object: Class ScalesList, gg>
      add: function
      clone: function
      find: function
      get_scales: function
      has_scale: function
      input: function
      n: function
      non_position_scales: function
      scales: list
      super:  <ggproto object: Class ScalesList, gg>
  
  $mapping
  Aesthetic mapping: 
  * `x`    -> `.data$val`
  * `y`    -> `.data$coord`
  * `xmin` -> `.lower`
  * `xmax` -> `.upper`
  
  $theme
  List of 93
   $ line                      :List of 6
    ..$ colour       : chr "black"
    ..$ size         : num 0.5
    ..$ linetype     : num 1
    ..$ lineend      : chr "butt"
    ..$ arrow        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_line" "element"
   $ rect                      :List of 5
    ..$ fill         : chr "white"
    ..$ colour       : chr "black"
    ..$ size         : num 0.5
    ..$ linetype     : num 1
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_rect" "element"
   $ text                      :List of 11
    ..$ family       : chr ""
    ..$ face         : chr "plain"
    ..$ colour       : chr "black"
    ..$ size         : num 11
    ..$ hjust        : num 0.5
    ..$ vjust        : num 0.5
    ..$ angle        : num 0
    ..$ lineheight   : num 0.9
    ..$ margin       : 'margin' num [1:4] 0points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ title                     : NULL
   $ aspect.ratio              : NULL
   $ axis.title                : NULL
   $ axis.title.x              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 2.75points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.title.x.top          :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 0
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 2.75points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.title.x.bottom       : NULL
   $ axis.title.y              : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ axis.title.y.left         : NULL
   $ axis.title.y.right        :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 0
    ..$ angle        : num -90
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 0points 2.75points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text                 :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : chr "grey30"
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.x               :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 2.2points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.x.top           :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 0
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 2.2points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.x.bottom        : NULL
   $ axis.text.y               :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 1
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 2.2points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.y.left          : NULL
   $ axis.text.y.right         :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 0
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 0points 2.2points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.ticks                : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ axis.ticks.x              : NULL
   $ axis.ticks.x.top          : NULL
   $ axis.ticks.x.bottom       : NULL
   $ axis.ticks.y              : NULL
   $ axis.ticks.y.left         : NULL
   $ axis.ticks.y.right        : NULL
   $ axis.ticks.length         : 'simpleUnit' num 2.75points
    ..- attr(*, "unit")= int 8
   $ axis.ticks.length.x       : NULL
   $ axis.ticks.length.x.top   : NULL
   $ axis.ticks.length.x.bottom: NULL
   $ axis.ticks.length.y       : NULL
   $ axis.ticks.length.y.left  : NULL
   $ axis.ticks.length.y.right : NULL
   $ axis.line                 : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ axis.line.x               : NULL
   $ axis.line.x.top           : NULL
   $ axis.line.x.bottom        : NULL
   $ axis.line.y               : NULL
   $ axis.line.y.left          : NULL
   $ axis.line.y.right         : NULL
   $ legend.background         : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ legend.margin             : 'margin' num [1:4] 5.5points 5.5points 5.5points 5.5points
    ..- attr(*, "unit")= int 8
   $ legend.spacing            : 'simpleUnit' num 11points
    ..- attr(*, "unit")= int 8
   $ legend.spacing.x          : NULL
   $ legend.spacing.y          : NULL
   $ legend.key                : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ legend.key.size           : 'simpleUnit' num 1.2lines
    ..- attr(*, "unit")= int 3
   $ legend.key.height         : NULL
   $ legend.key.width          : NULL
   $ legend.text               :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ legend.text.align         : NULL
   $ legend.title              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 0
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ legend.title.align        : NULL
   $ legend.position           : chr "right"
   $ legend.direction          : NULL
   $ legend.justification      : chr "center"
   $ legend.box                : NULL
   $ legend.box.just           : NULL
   $ legend.box.margin         : 'margin' num [1:4] 0cm 0cm 0cm 0cm
    ..- attr(*, "unit")= int 1
   $ legend.box.background     : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ legend.box.spacing        : 'simpleUnit' num 11points
    ..- attr(*, "unit")= int 8
   $ panel.background          : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ panel.border              : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ panel.spacing             : 'simpleUnit' num 5.5points
    ..- attr(*, "unit")= int 8
   $ panel.spacing.x           : NULL
   $ panel.spacing.y           : NULL
   $ panel.grid                :List of 6
    ..$ colour       : chr "grey92"
    ..$ size         : NULL
    ..$ linetype     : NULL
    ..$ lineend      : NULL
    ..$ arrow        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_line" "element"
   $ panel.grid.major          : NULL
   $ panel.grid.minor          :List of 6
    ..$ colour       : NULL
    ..$ size         : 'rel' num 0.5
    ..$ linetype     : NULL
    ..$ lineend      : NULL
    ..$ arrow        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_line" "element"
   $ panel.grid.major.x        : NULL
   $ panel.grid.major.y        : NULL
   $ panel.grid.minor.x        : NULL
   $ panel.grid.minor.y        : NULL
   $ panel.ontop               : logi FALSE
   $ plot.background           : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ plot.title                :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 1.2
    ..$ hjust        : num 0
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 5.5points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.title.position       : chr "panel"
   $ plot.subtitle             :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 0
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 5.5points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.caption              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : num 1
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 5.5points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.caption.position     : chr "panel"
   $ plot.tag                  :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 1.2
    ..$ hjust        : num 0.5
    ..$ vjust        : num 0.5
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.tag.position         : chr "topleft"
   $ plot.margin               : 'margin' num [1:4] 5.5points 5.5points 5.5points 5.5points
    ..- attr(*, "unit")= int 8
   $ strip.background          : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ strip.background.x        : NULL
   $ strip.background.y        : NULL
   $ strip.placement           : chr "inside"
   $ strip.text                :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : chr "grey10"
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 4.4points 4.4points 4.4points 4.4points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ strip.text.x              : NULL
   $ strip.text.y              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : num -90
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ strip.switch.pad.grid     : 'simpleUnit' num 2.75points
    ..- attr(*, "unit")= int 8
   $ strip.switch.pad.wrap     : 'simpleUnit' num 2.75points
    ..- attr(*, "unit")= int 8
   $ strip.text.y.left         :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : num 90
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   - attr(*, "class")= chr [1:2] "theme" "gg"
   - attr(*, "complete")= logi TRUE
   - attr(*, "validate")= logi TRUE
  
  $coordinates
  <ggproto object: Class CoordCartesian, Coord, gg>
      aspect: function
      backtransform_range: function
      clip: on
      default: TRUE
      distance: function
      expand: TRUE
      is_free: function
      is_linear: function
      labels: function
      limits: list
      modify_scales: function
      range: function
      render_axis_h: function
      render_axis_v: function
      render_bg: function
      render_fg: function
      setup_data: function
      setup_layout: function
      setup_panel_guides: function
      setup_panel_params: function
      setup_params: function
      train_panel_guides: function
      transform: function
      super:  <ggproto object: Class CoordCartesian, Coord, gg>
  
  $facet
  <ggproto object: Class FacetGrid, Facet, gg>
      compute_layout: function
      draw_back: function
      draw_front: function
      draw_labels: function
      draw_panels: function
      finish_data: function
      init_scales: function
      map_data: function
      params: list
      setup_data: function
      setup_params: function
      shrink: TRUE
      train_scales: function
      vars: function
      super:  <ggproto object: Class FacetGrid, Facet, gg>
  
  $plot_env
  <environment: 0x5646caf28ac0>
  
  $labels
  $labels$x
  [1] "Log-Ratio Value"
  
  $labels$y
  [1] "coord"
  
  $labels$xmin
  [1] ".lower"
  
  $labels$xmax
  [1] ".upper"
  
  
  $guides
  $guides$colour
  $title
  [1] "Credible\nInterval"
  
  $title.position
  NULL
  
  $title.theme
  NULL
  
  $title.hjust
  NULL
  
  $title.vjust
  NULL
  
  $label
  [1] TRUE
  
  $label.position
  NULL
  
  $label.theme
  NULL
  
  $label.hjust
  NULL
  
  $label.vjust
  NULL
  
  $keywidth
  NULL
  
  $keyheight
  NULL
  
  $direction
  NULL
  
  $override.aes
  named list()
  
  $nrow
  NULL
  
  $ncol
  NULL
  
  $byrow
  [1] FALSE
  
  $reverse
  [1] FALSE
  
  $order
  [1] 0
  
  $available_aes
  [1] "any"
  
  $name
  [1] "legend"
  
  attr(,"class")
  [1] "guide"  "legend"
  
  
  attr(,"class")
  [1] "gg"     "ggplot"
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 102 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-pibble.R:60:3): optim sylvester gets same result ──────────────
  plain > sylv not equal to TRUE.
  1 element mismatch
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 102 ]
  Error: Test failures
  Execution halted