Packages required but not available:
  'dplyr', 'showtext', 'sysfonts', 'ggplot2', 'gridExtra',
  'hrbrthemes', 'htmltools', 'kableExtra', 'knitr', 'mice', 'pagedown',
  'partykit', 'purrr', 'reactable', 'rlang', 'rmarkdown', 'shiny',
  'tibble', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'DBI', 'classInt', 'dbplyr', 'forecast', 'ISLR', 'nycflights13',
  'randomForest', 'prettydoc', 'RSQLite', 'ranger', 'stringi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'fs', 'rappdirs', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'graph', 'Rgraphviz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'jsonlite', 'magrittr', 'RColorBrewer', 'scales'

Packages suggested but not available for checking:
  'knitr', 'tidyr', 'DT', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lavaan', 'MplusAutomation'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'ggplot2', 'stringr', 'tibble', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'abind', 'bayesplot', 'coda', 'ggplot2', 'ggrepel', 'MCMCpack',
  'modeltools', 'pcaPP', 'robustbase', 'Rcpp', 'RcppArmadillo',
  'RcppProgress'

Packages suggested but not available for checking:
  'knitr', 'mcmcplots', 'rlecuyer', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DEoptim', 'Rcpp', 'dplyr', 'pbapply', 'shiny', 'tidyr', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'readxl', 'xml2', 'rlang', 'rmarkdown', 'knitr',
  'digest', 'writexl', 'rappdirs', 'yaml', 'EML', 'stringr'

Packages suggested but not available for checking:
  'covr', 'testthat', 'here', 'kableExtra', 'shiny', 'openxlsx', 'xfun'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'lme4', 'matrixcalc', 'randomForest'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'gbm', 'lmtest', 'sandwich', 'randomForest', 'caret', 'ISLR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lfda'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'sp', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nadiv', 'robustbase', 'pls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cOde', 'deSolve', 'rootSolve', 'ggplot2', 'stringr', 'plyr',
  'dplyr', 'foreach', 'doParallel'

Packages suggested but not available for checking:
  'reticulate', 'pander', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'backports', 'cli', 'DBI', 'dplyr', 'ellipsis', 'glue', 'igraph',
  'lifecycle', 'magrittr', 'memoise', 'pillar', 'purrr', 'rlang',
  'tibble', 'tidyr', 'tidyselect', 'vctrs'

Packages suggested but not available for checking:
  'brio', 'covr', 'crayon', 'dbplyr', 'DiagrammeR', 'DiagrammeRsvg',
  'digest', 'duckdb', 'fansi', 'keyring', 'knitr', 'mockr',
  'nycflights13', 'odbc', 'pixarfilms', 'pool', 'progress', 'RMariaDB',
  'rmarkdown', 'RPostgres', 'RSQLite', 'testthat', 'tidyverse',
  'waldo', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgl'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'mvtnorm', 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'grpreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixStats', 'foreach', 'doParallel'

Packages suggested but not available for checking: 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'glmnet', 'kernlab', 'ks', 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'readxl', 'purrr', 'lubridate', 'httr', 'tidyr',
  'tibble', 'progress'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'zoo', 'quantmod', 'dplyr', 'readr', 'DBI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'corpcor', 'igraph', 'ggplot2', 'SeqNet', 'Rdpack', 'dplyr',
  'tibble', 'curl', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'markdown', 'xml2', 'readr',
  'bc3net', 'DWLasso', 'huge', 'GENIE3', 'minet', 'AnnotationDbi',
  'reactome.db', 'biomaRt'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'igraph', 'lars'
Error(s) in re-building vignettes:
--- re-building 'Introduction.Rnw' using Sweave
dna 2.1-2 loaded

Attaching package: 'dna'

The following object is masked from 'package:base':

    summary

Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "Introduction.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'Introduction.Rnw' failed with diagnostics:
running 'texi2dvi' on 'Introduction.tex' failed

LaTeX errors:
!pdfTeX error: pdflatex (file ./Introduction-003.pdf): PDF inclusion: required 
page does not exist <0>
 ==> Fatal error occurred, no output PDF file produced!

--- failed re-building 'Introduction.Rnw'

SUMMARY: processing the following file failed:
  'Introduction.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'Rsolnp', 'multicool', 'Rcpp', 'RcppParallel', 'RcppProgress'

Packages suggested but not available for checking:
  'testthat', 'testthis', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'supraHex', 'graph', 'Rgraphviz'

Packages suggested but not available for checking:
  'limma', 'foreach', 'doParallel', 'Biobase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'rvest', 'tidyr', 'tibble'

Packages suggested but not available for checking: 'httptest', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'spdep', 'fdrtool', 'GOstats', 'locfdr', 'mvtnorm',
  'caTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'gplots', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'network', 'ergm', 'sna', 'igraph', 'arm', 'glmnet'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/dnr_vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

Packages suggested but not available for checking:
  'gtools', 'MCMCpack', 'functional'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'RANN'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'OutliersO3', 'ggplot2', 'FNN'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'Deriv', 'dplyr', 'ggplot2', 'magrittr', 'microbenchmark',
  'pbkrtest', 'tibble'

Packages suggested but not available for checking:
  'multcomp', 'geepack', 'lme4', 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/doby.Rnw'
   'inst/doc/linest_lsmeans.Rnw'
   'inst/doc/restrict_fun.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tm', 'quanteda', 'glmnet', 'stringr', 'english', 'textstem',
  'SnowballC', 'stringi'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'tokenizers.bpe', 'word2vec', 'uwot', 'dbscan', 'udpipe'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'attempt', 'glue', 'R6', 'fs', 'cli', 'remotes', 'desc', 'usethis',
  'jsonlite', 'pkgbuild'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Packages suggested but not available for checking:
  'markdown', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'sys', 'rstudioapi'

Packages suggested but not available for checking:
  'rmarkdown', 'R.rsp', 'stringr'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magick', 'pdftools', 'locatexec', 'rappdirs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'copula', 'numDeriv', 'Deriv', 'cubature', 'SparseGrid', 'mvtnorm',
  'testthat'
Packages unavailable to check Rd xrefs: 'Deriv', 'cubature', 'SparseGrid', 'numDeriv'
'LazyData' is specified without a 'data' directory
Running examples in 'docopulae-Ex.R' failed
The error most likely occurred in:

> ### Name: nint_integrateNCube
> ### Title: Integrate Hypercube
> ### Aliases: nint_integrateNCube nint_integrateNCube_integrate
> ###   nint_integrateNCube_cubature nint_integrateNCube_SparseGrid
> 
> ### ** Examples
> 
> ## integrate with defaults (stats::integrate)
> nint_integrate(sin, nint_space(nint_intvDim(pi/4, 3*pi/4)))
[1] 1.414214
> 
> 
> dfltNCube = nint_integrateNCube
> 
> ## prepare for integrateA
> ncube = function(f, lowerLimit, upperLimit, ...) {
+     cat('using integrateA\n')
+     integrateA(f, lowerLimit, upperLimit, ..., subdivisions=2)
+ }
> ncube = nint_integrateNCube_integrate(ncube)
> unlockBinding('nint_integrateNCube', environment(nint_integrate))
> assign('nint_integrateNCube', ncube, envir=environment(nint_integrate))
> 
> ## integrate with integrateA
> nint_integrate(sin, nint_space(nint_intvDim(pi/4, 3*pi/4)))
using integrateA
[1] 1.414214
> 
> 
> ## prepare for cubature
> ncube = function(f, lowerLimit, upperLimit, ...) {
+     cat('using cubature\n')
+     r = cubature::adaptIntegrate(f, lowerLimit, upperLimit, ..., maxEval=1e3)
+     return(r$integral)
+ }
> unlockBinding('nint_integrateNCube', environment(nint_integrate))
> assign('nint_integrateNCube', ncube, envir=environment(nint_integrate))
> 
> ## integrate with cubature
> nint_integrate(sin, nint_space(nint_intvDim(pi/4, 3*pi/4)))
using cubature
Error in loadNamespace(x) : there is no package called 'cubature'
Calls: nint_integrate ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'pracma', 'bit64'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'parsermd', 'purrr', 'quanteda', 'quanteda.textstats',
  'rlang', 'stringr', 'yaml'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'roxygen2'

Packages suggested but not available for checking:
  'devtools', 'rstudioapi', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ppert: no visible global function definition for 'pbeta'
prepare8pkg: no visible global function definition for 'glob2rx'
qpert: no visible global function definition for 'qbeta'
rpert: no visible global function definition for 'rbeta'
Undefined global functions or variables:
  glob2rx pbeta qbeta rbeta
Consider adding
  importFrom("stats", "pbeta", "qbeta", "rbeta")
  importFrom("utils", "glob2rx")
to your NAMESPACE file.
Packages required but not available:
  'officer', 'magrittr', 'htmltools', 'xml2', 'yaml'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'callr', 'checkmate', 'desc', 'rcmdcheck', 'roxygen2', 'rstudioapi',
  'withr'

Packages suggested but not available for checking:
  'covr', 'devtools', 'fritools', 'knitr', 'pkgload', 'rmarkdown',
  'rprojroot', 'RUnit', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'drat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'purrr', 'rlang', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'rprojroot', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'purrr', 'dplyr', 'httr', 'magrittr'

Packages suggested but not available for checking: 'covr', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'callr', 'digest', 'magrittr', 'osmdata', 'Rcpp', 'RcppParallel',
  'RcppThread'

Packages suggested but not available for checking:
  'bench', 'dplyr', 'geodist', 'ggplot2', 'igraph', 'igraphdata',
  'jsonlite', 'knitr', 'markdown', 'rmarkdown', 'roxygen2', 'sf',
  'testthat', 'tidygraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'conf.design', 'vcd', 'combinat', 'numbers', 'partitions'

Packages suggested but not available for checking:
  'FrF2', 'DoE.wrapper', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'agricolae'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'combinat', 'DoE.base'

Package suggested but not available for checking: 'slam'

Packages which this enhances but not available for checking:
  'gurobi', 'Rmosek'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DoE.wrapper'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FrF2', 'DoE.base', 'rsm', 'lhs', 'DiceDesign', 'AlgDesign'

Package suggested but not available for checking: 'skpr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'foreach', 'future', 'globals', 'iterators'

Packages suggested but not available for checking:
  'doRNG', 'markdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'lme4', 'testthat', 'car', 'covr', 'knitr', 'rmarkdown', 'pscl',
  'dynlm', 'ggplot2', 'reshape2', 'betareg', 'performance'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'igraph', 'chron'

Packages suggested but not available for checking:
  'XLConnect', 'openxlsx', 'RcmdrMisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjson', 'uuid', 'lgr'

Packages suggested but not available for checking:
  'covr', 'DT', 'lintr', 'testthat', 'spelling', 'rhub', 'mockery'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'dominanceanalysis', 'testthat', 'relaimpo', 'yhat', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'aricode', 'arules', 'clusterCrit', 'dplyr', 'ggplot2', 'Gmedian',
  'mice', 'NbClust', 'ncvreg', 'plyr', 'scales', 'withr'

Packages suggested but not available for checking:
  'censReg', 'clustMixType', 'CPE', 'dbscan', 'e1071', 'ggpubr',
  'Hmisc', 'igraph', 'mclust', 'RColorBrewer', 'reshape2', 'testthat',
  'timeROC', 'truncnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'iterators', 'Rmpi'

Packages suggested but not available for checking:
  'randomForest', 'itertools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'nabor', 'RANN', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages unavailable to check Rd xrefs: 'RANN', 'nabor'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'concaveman', 'ggplot2', 'igraph', 'Morpho', 'rgl', 'Rvcg', 'sp',
  'usethis', 'tis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'iterators'

Packages suggested but not available for checking:
  'caret', 'mlbench', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'stringr', 'tibble', 'tidytext'

Packages suggested but not available for checking:
  'purrr', 'knitr', 'rmarkdown', 'conflicted', 'readr', 'rvest',
  'sqldf', 'tidyr', 'testthat', 'usethis', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'plyr', 'tmcn', 'tidyselect', 'reshape2', 'tidyr',
  'rvest', 'xml2', 'crayon', 'httr', 'usethis', 'desc', 'rstudioapi',
  'stringr', 'openxlsx'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'iterators', 'redux'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'data.table', 'lme4', 'ggplot2', 'gridExtra', 'lmerTest',
  'deSolve', 'futile.logger'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'rngtools', 'iterators'

Packages suggested but not available for checking:
  'doParallel', 'doMPI', 'doRedis', 'rbenchmark', 'devtools', 'knitr',
  'bibtex', 'testthat', 'pkgmaker'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/doRNG.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sensitivity2x2xk', 'sensitivitymult', 'sensitivitymv', 'senstrat'

Packages suggested but not available for checking: 'optmatch', 'DiPs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'dagitty', 'DOT', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinyjs', 'ggplot2', 'DoseFinding', 'DT', 'latticeExtra'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking:
  'numDeriv', 'Rsolnp', 'quadprog', 'multcomp', 'ggplot2', 'knitr',
  'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat', 'tidyr', 'dplyr', 'ggplot2',
  'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'iterators', 'snow'

Packages suggested but not available for checking:
  'RUnit', 'caret', 'mlbench'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'HDShOP'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'optmatch'
Package required but not available: 'mvmeta'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rms'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/dosresmeta.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'plyr', 'testthat'
dostats: no visible binding for global variable 'na.fail'
first: no visible global function definition for 'head'
last: no visible global function definition for 'tail'
pval.default: no visible global function definition for '.hasSlot'
pval.lm: no visible global function definition for 'anova'
Undefined global functions or variables:
  .hasSlot anova head na.fail tail
Consider adding
  importFrom("methods", ".hasSlot")
  importFrom("stats", "anova", "na.fail")
  importFrom("utils", "head", "tail")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Package unavailable to check Rd xrefs: 'plyr'
Running examples in 'dostats-Ex.R' failed
The error most likely occurred in:

> ### Name: dostats
> ### Title: Convenient interface for computing statistics on a vector
> ### Aliases: dostats
> ### Keywords: misc utilities,
> 
> ### ** Examples
> 
> data(mtcars)
> library(plyr)
Error in library(plyr) : there is no package called 'plyr'
Execution halted
Running 'test_package.R'
Running the tests in 'tests/test_package.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'microbenchmark', 'OpenMPController', 'RColorBrewer', 'roxygen2',
  'spam', 'testthat'
Running 'run-all.R'
Running the tests in 'tests/run-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'htmltools'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'cli'

Packages suggested but not available for checking:
  'microbenchmark', 'covr', 'withr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'V8'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'parameters', 'margins', 'dplyr', 'stringr', 'ggstance',
  'rlang', 'purrr', 'gtable'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'coneproj'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'data.table', 'checkmate', 'mlr3', 'mlr3tuning', 'mvtnorm',
  'clusterGeneration', 'readstata13', 'mlr3learners', 'mlr3misc'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr', 'patrick', 'paradox',
  'dplyr', 'glmnet', 'lgr', 'ranger', 'sandwich', 'AER', 'bbotk'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'unglue'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bootstrap', 'forecast'

Packages suggested but not available for checking:
  'PerformanceAnalytics', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'brio', 'desc', 'digest', 'evaluate', 'fansi', 'memoise', 'rlang',
  'vctrs', 'yaml'

Packages suggested but not available for checking:
  'covr', 'htmltools', 'jsonlite', 'leaflet', 'pkgload', 'rmarkdown',
  'testthat', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fs', 'readr', 'writexl', 'bsplus', 'mime', 'htmltools', 'magrittr',
  'zip', 'ggplot2', 'base64enc'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'spelling', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstack', 'dplyr', 'magrittr', 'keras', 'raster',
  'tensorflow', 'sp', 'rgdal', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'cubature', 'minpack.lm', 'Rmpfr', 'sp'

Packages suggested but not available for checking:
  'rgeos', 'rgdal', 'rgbif', 'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'R.utils'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'alakazam', 'ape', 'Biostrings', 'dplyr', 'ggtree',
  'gridExtra', 'markdown', 'phangorn', 'phylotate', 'RColorBrewer',
  'rlang', 'shazam', 'stringr', 'tidyselect', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Packages suggested but not available for checking:
  'rex', 'covr', 'testthat', 'knitr', 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tmvtnorm', 'VGAM', 'gplots', 'CEoptim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dbscan', 'e1071', 'exactci', 'ggplot2', 'ggpubr', 'raster', 'rlist',
  'scales', 'shiny', 'shinyjs', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'VGAM', 'gsl', 'moments', 'fitdistrplus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bnclassify'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'matrixStats', 'png', 'R.utils', 'stringi', 'stringr',
  'XML', 'plyr', 'signal'

Packages suggested but not available for checking:
  'Biobase', 'Cairo', 'dichromat', 'foreach', 'forecast', 'gmp',
  'iterators', 'knitr', 'RColorBrewer', 'testthat', 'tikzDevice',
  'waveslim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'miniUI', 'rstudioapi', 'shinyWidgets', 'shinyAce',
  'tidyverse', 'tidyr', 'stringr', 'magrittr', 'plyr', 'DT'

Packages suggested but not available for checking:
  'nycflights13', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'generics', 'glue', 'lifecycle', 'magrittr', 'R6', 'rlang', 'tibble',
  'tidyselect', 'vctrs', 'pillar'

Packages suggested but not available for checking:
  'bench', 'broom', 'callr', 'covr', 'DBI', 'dbplyr', 'ggplot2',
  'knitr', 'Lahman', 'lobstr', 'microbenchmark', 'nycflights13',
  'purrr', 'rmarkdown', 'RMySQL', 'RPostgreSQL', 'RSQLite', 'testthat',
  'tidyr', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'dbplyr', 'odbc', 'bit64', 'DBI'

Packages suggested but not available for checking:
  'blob', 'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'httr', 'jsonlite', 'magrittr', 'rio'

Packages suggested but not available for checking: 'devtools', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'coda'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DPQ', 'Rmpfr', 'gmp'

Package suggested but not available for checking: 'sfsmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sfsmisc'

Packages suggested but not available for checking:
  'Rmpfr', 'DPQmpfr', 'gmp', 'scatterplot3d', 'akima'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'markdown', 'knitr', 'htmltools', 'RcppDynProg', 'microbenchmark',
  'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'plyr', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'truncdist', 'binaryLogic', 'prodlim', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'daterangepicker', 'DIZtools', 'DIZutils', 'DQAstats',
  'DT', 'jsonlite', 'knitr', 'lubridate', 'magrittr', 'parsedate',
  'shiny', 'shinyalert', 'shinydashboard', 'shinyFiles', 'shinyjs',
  'shinyWidgets', 'waiter'

Packages suggested but not available for checking:
  'lintr', 'processx', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'DIZtools', 'DIZutils', 'future', 'future.apply',
  'jsonlite', 'kableExtra', 'knitr', 'magrittr', 'parsedate',
  'rmarkdown', 'tinytex'

Packages suggested but not available for checking:
  'lintr', 'remotes', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH', 'sitmo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BB', 'data.table', 'doParallel', 'openxlsx', 'qtl', 'stringr',
  'writexl', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'tensor', 'Rdpack', 'generics', 'rlang', 'glue'

Packages suggested but not available for checking:
  'drc', 'devtools', 'roxygen2', 'testthat', 'knitr', 'rmarkdown',
  'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'spelling'

Package which this enhances but not available for checking: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'golem', 'shiny', 'DT', 'ggplot2', 'readr', 'openxlsx',
  'dplyr', 'RColorBrewer', 'stringr', 'tidyr', 'purrr', 'tibble',
  'broom', 'cowplot', 'ggforce', 'magrittr', 'shinydashboard',
  'shinyWidgets', 'colourpicker', 'colorspace', 'visNetwork', 'igraph',
  'rlang', 'htmltools', 'promises', 'future', 'lubridate', 'xml2',
  'rvest', 'curl', 'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'processx', 'knitr', 'zip', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'tidyr', 'tibble', 'dplyr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Note: found 100 marked UTF-8 strings
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'htmlwidgets', 'shiny', 'shinyjs'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64url', 'digest', 'igraph', 'rlang', 'storr', 'tidyselect',
  'txtq', 'vctrs'

Packages suggested but not available for checking:
  'abind', 'bindr', 'callr', 'cli', 'clustermq', 'crayon', 'curl',
  'data.table', 'disk.frame', 'downloader', 'fst', 'future', 'ggplot2',
  'ggraph', 'keras', 'knitr', 'lubridate', 'networkD3', 'prettycode',
  'progress', 'qs', 'Rcpp', 'rmarkdown', 'rstudioapi', 'styler',
  'testthat', 'tibble', 'txtplot', 'usethis', 'visNetwork', 'webshot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reshape2', 'readr', 'data.table', 'httr', 'git2r', 'xml2',
  'tokenizers', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'fmsb', 'knitr', 'magrittr', 'highcharter', 'rmarkdown',
  'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'git2r', 'simplermarkdown'

VignetteBuilder package required for checking but not installed: 'simplermarkdown'
Package unavailable to check Rd xrefs: 'git2r'
Packages required but not available:
  'htmltools', 'magrittr', 'glue', 'bsplus', 'shiny', 'stringr'

Packages suggested but not available for checking: 'testthat', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'psych', 'magrittr', 'moments', 'readxl', 'shiny',
  'shinycssloaders', 'shinydashboard', 'xlsx', 'purrr', 'rlang'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pracma', 'RConics', 'rmutil', 'cubature'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rstan', 'ade4', 'coda', 'sde'

Packages suggested but not available for checking:
  'fda', 'ggplot2', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'gtools', 'multcomp', 'plotrix', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/drda.Rtex'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/drda.Rtex'
(Is a VignetteBuilder field missing?)
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'trust', 'BMisc'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SuperLearner'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'dplyr', 'ggplot2', 'purrr', 'rootSolve', 'rjags', 'rlang',
  'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'fs', 'knitr', 'rmarkdown', 'tibble', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'msgps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'drc', 'reshape2', 'qcc', 'odbc', 'DBI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fastDummies', 'Rcpp', 'transport', 'RcppEigen'

Package suggested but not available for checking: 'DiagrammeR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'nleqslv', 'Rcpp', 'data.table', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maptools', 'PBSmapping', 'raster', 'sp', 'spatstat.geom',
  'spatstat.core', 'spatstat.linnet', 'spatstat', 'spdep'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'learnr', 'gapminder', 'scales', 'gt', 'modelsummary', 'dotwhisker',
  'interplot', 'likert', 'ggthemes', 'ggeffects', 'summarytools',
  'knitr', 'tidyverse', 'car', 'arm', 'ordinal', 'moments', 'tibble',
  'performance', 'kableExtra'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'xts', 'zoo', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DALEX', 'dplyr', 'tidyr', 'ingredients'

Packages suggested but not available for checking: 'testthat', 'ranger'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'seqinr', 'ggplot2', 'future', 'doParallel', 'foreach', 'tidyverse',
  'dplyr', 'reshape2', 'Rdpack'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'roxygen2', 'irlba'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sampling', 'rmarkdown', 'SmartEDA', 'data.table', 'caTools',
  'ParamHelpers', 'mlr', 'ggplot2', 'iml'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'ranger', 'glmnet', 'randomForest', 'xgboost',
  'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'randomForest', 'GenomicRanges', 'GenomeInfoDb',
  'GenomicFeatures', 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'S4Vectors',
  'org.Hs.eg.db', 'rlang'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'SuperLearner', 'ggplot2', 'nnls', 'ranger'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'mclust', 'purrr', 'S4Vectors', 'RColorBrewer', 'Rcpp', 'Seurat',
  'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'nloptr', 'foreach', 'stringi', 'future.batchtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'DescTools'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'rvest', 'xml2'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'lhs', 'nloptr', 'plotly', 'rlang', 'XML'

Packages suggested but not available for checking:
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  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'lhs', 'nloptr', 'plotly', 'rlang', 'XML'

Packages suggested but not available for checking:
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  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
   use the Contact field instead
Packages required but not available:
  'ggplot2', 'xts', 'zoo', 'R2HTML', 'tsoutliers', 'htmlwidgets',
  'forecast', 'rJava', 'timeDate', 'dygraphs', 'gridExtra', 'reshape2',
  'seastests'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder packages required for checking but not installed:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'rstudioapi', 'gridExtra', 'rlang'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
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Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Unavailable namespace imported from by a ':::' call: 'hive'
  See the note in ?`:::` about the use of this operator.
Packages required but not available: 'Rcpp', 'stringr'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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  'rlang'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'sva'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'ppcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'matrixStats', 'FNN', 'mixtools', 'BayesTree', 'gss',
  'e1071', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DEoptimR'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 1 marked Latin-1 string
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  'jsonlite'

Packages suggested but not available for checking:
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VignetteBuilder packages required for checking but not installed:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gee', 'PropCIs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'checkmate', 'RcppArmadillo'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
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(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'awsMethods', 'adimpro', 'aws', 'rgl', 'oro.nifti', 'oro.dicom',
  'gsl', 'quadprog'

Package suggested but not available for checking: 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
DTK.plot: no visible global function definition for 'axis'
DTK.plot: no visible global function definition for 'title'
DTK.plot: no visible global function definition for 'lines'
DTK.plot: no visible global function definition for 'points'
DTK.test: no visible binding for global variable 'sd'
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TK.test: no visible global function definition for 'TukeyHSD'
TK.test: no visible global function definition for 'aov'
Undefined global functions or variables:
  TukeyHSD aov axis lines points qtukey sd title
Consider adding
  importFrom("graphics", "axis", "lines", "points", "title")
  importFrom("stats", "TukeyHSD", "aov", "qtukey", "sd")
to your NAMESPACE file.
DTMC: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Packages required but not available: 'diagram', 'dfcrm'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'rlang', 'tibble', 'tidyselect', 'vctrs'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'gtools', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'jquerylib', 'promises'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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  'stringr', 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kernlab', 'foreach', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'aod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'checkmate', 'data.table', 'R6'

Packages suggested but not available for checking:
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  'rmarkdown', 'runner', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'chk', 'hms', 'lifecycle'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dtw', 'rlist', 'e1071', 'entropy', 'lsa'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'proxy', 'dtw', 'clue', 'dplyr', 'flexclust', 'foreach', 'ggplot2',
  'ggrepel', 'RSpectra', 'Rcpp', 'RcppParallel', 'reshape2', 'shiny',
  'shinyjs', 'RcppArmadillo', 'RcppThread'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/dtwclust.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'proxy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'raster', 'ggplot2', 'rgdal', 'dtw', 'proxy', 'scales',
  'reshape2', 'RColorBrewer', 'plyr', 'sp', 'lubridate', 'caret',
  'xtable', 'Rdpack', 'data.table'

Packages suggested but not available for checking:
  'gridExtra', 'png', 'Hmisc', 'rbenchmark'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dtw', 'rlist', 'e1071', 'entropy', 'lsa', 'DTWBI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'matrixcalc', 'RANN', 'qlcMatrix', 'Seurat'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'hdf5r', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DBI'

Packages suggested but not available for checking:
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  'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crul', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'tidyverse', 'ggplot2', 'rlang', 'data.table',
  'rstatix'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
File
  LICENSE
is not mentioned in the DESCRIPTION file.
dummy: no visible global function definition for 'model.matrix'
dummy: no visible global function definition for 'model.frame'
Undefined global functions or variables:
  model.frame model.matrix
Consider adding
  importFrom("stats", "model.frame", "model.matrix")
to your NAMESPACE file.
Packages required but not available: 'stringi', 'crayon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'tibble', 'magrittr', 'stringdist', 'lintr',
  'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'numDeriv', 'nloptr', 'data.table', 'mvtnorm'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/whatmph.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'shiny', 'DT', 'reshape2'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'bs4Dash'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/DVHmetrics.Rnw'
   'inst/doc/DVHshiny.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pedtools', 'forrel', 'pedprobr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rbenchmark', 'dplyr', 'cubature', 'data.table', 'ggplot2',
  'mvtnorm', 'pracma', 'Rcpp', 'survey', 'tab'

Packages suggested but not available for checking:
  'knitr', 'microbenchmark', 'printr', 'rmarkdown', 'RcppRoll'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'tsDyn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dygraphs', 'htmltools', 'ncdf4', 'raster', 'rgdal'

Packages suggested but not available for checking:
  'hydroGOF', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SparseM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'raster', 'berryFunctions', 'R.utils'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'glmnet', 'hglasso'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'expint', 'GenEst', 'gtools', 'invgamma', 'magrittr', 'matrixStats',
  'mvtnorm', 'numDeriv', 'plotrix', 'pracma', 'sf', 'statmod', 'VGAM'

Package suggested but not available for checking: 'gpclib'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'maxLik', 'DiscreteWeibull', 'Ecdat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CholWishart', 'RcppZiggurat', 'Rfast', 'mvtnorm'

Package suggested but not available for checking: 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ncdf4', 'tidyr', 'hydroGOF', 'ggplot2', 'RColorBrewer',
  'lubridate', 'R.utils'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Chaos01'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'htmlwidgets', 'htmltools', 'zoo', 'xts'

Package suggested but not available for checking: 'testthat'

Packages which this enhances but not available for checking:
  'rmarkdown', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'quadprog'
Package suggested but not available for checking: 'testthat'
Package unavailable to check Rd xrefs: 'stringdist'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'lmtest'

Packages suggested but not available for checking:
  'urca', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'drc', 'fields', 'foreach', 'insol', 'slam', 'doParallel',
  'sp'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'eesim', 'geosphere', 'ggplot2', 'gstat',
  'rgeos', 'spatstat', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'lhs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'timereg', 'captioner', 'biglm',
  'httr', 'shiny', 'formatR', 'R.rsp', 'speedglm', 'dichromat',
  'colorspace', 'plyr', 'gsl', 'mvtnorm', 'nloptr'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/ddhazard.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'simstandard', 'tidyr', 'lavaan', 'ggplot2', 'magrittr',
  'tibble', 'patchwork', 'stringr', 'purrr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pbapply', 'seewave', 'tuneR', 'png', 'NatureSounds', 'ggplot2',
  'viridis', 'scales', 'av', 'ari', 'gganimate', 'magrittr'

Packages suggested but not available for checking: 'imager', 'fs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'raster', 'rgeos', 'jsonlite'

Packages suggested but not available for checking:
  'rgdal', 'igraph', 'knitr', 'rmarkdown', 'covr', 'pkgdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'zoo', 'xts', 'Rcpp'

Packages suggested but not available for checking:
  'raster', 'rgdal', 'knitr', 'rmarkdown', 'covr', 'bookdown',
  'pkgdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'akima', 'tgp', 'plgp'
Running examples in 'dynaTree-Ex.R' failed
The error most likely occurred in:

> ### Name: sens.dynaTree
> ### Title: Monte Carlo Sensitivity Analysis for dynaTree Models
> ### Aliases: sens.dynaTree
> ### Keywords: methods htest
> 
> ### ** Examples
> 
> ## friedman data
> library(tgp)
Error in library(tgp) : there is no package called 'tgp'
Execution halted
Package required but not available: 'tcltk2'

Packages suggested but not available for checking: 'tkrplot', 'readxl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
MultiTestH0 : MultiTestOneColumn: no visible global function definition
  for 'pchisq'
RunClustering : CheckClusterNew: no visible global function definition
  for 'qchisq'
RunClustering: no visible global function definition for 'qchisq'
RunDenoising: no visible binding for global variable 'var'
RunDenoising: no visible global function definition for 'qchisq'
RunDenoising: no visible binding for global variable 'median'
RunDenoising: no visible global function definition for 'var'
RunDenoising : buildEstimate: no visible global function definition for
  'qchisq'
Undefined global functions or variables:
  median pchisq qchisq var
Consider adding
  importFrom("stats", "median", "pchisq", "qchisq", "var")
to your NAMESPACE file.
Packages required but not available: 'igraph', 'Rcpp', 'Rdpack'

Package suggested but not available for checking: 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpridge'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dynutils', 'irlba', 'lmds', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'diffusionMap', 'fastICA', 'igraph', 'lle', 'RANN',
  'Rtsne', 'smacof', 'uwot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'doParallel', 'foreach'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'dynutils', 'dynwrap', 'purrr', 'magrittr', 'ranger',
  'reshape2', 'testthat', 'tidyr', 'tibble'

Packages suggested but not available for checking: 'caret', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'dynutils', 'ggplot2', 'ggraph', 'ggrepel',
  'GillespieSSA2', 'igraph', 'lmds', 'patchwork', 'pbapply', 'purrr',
  'rlang', 'tibble', 'tidygraph', 'tidyr', 'viridis'

Packages suggested but not available for checking:
  'anndata', 'covr', 'dynwrap', 'R.rsp', 'rmarkdown', 'Seurat',
  'SingleCellExperiment', 'SummarizedExperiment', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
GetIntMod: no visible global function definition for 'arima'
GetLikeDI: no visible global function definition for 'arima'
GetLikeDI: no visible global function definition for 'logLik'
GetPV: no visible global function definition for 'optimize'
GetPV: no visible global function definition for 'pchisq'
fitdi: no visible global function definition for 'optimize'
Undefined global functions or variables:
  arima logLik optimize pchisq
Consider adding
  importFrom("stats", "arima", "logLik", "optimize", "pchisq")
to your NAMESPACE file.
Packages required but not available: 'zoo', 'car', 'lmtest'

Packages suggested but not available for checking:
  'sandwich', 'strucchange', 'TSA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'glue', 'R6', 'rlang', 'stringr', 'yaml'

Packages suggested but not available for checking:
  'devtools', 'usethis', 'rmarkdown', 'markdown', 'knitr', 'covr',
  'testthat', 'lintr', 'remotes', 'pkgdown', 'prettydoc', 'here',
  'fansi', 'pander', 'DT'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'zoo', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'shiny', 'ggplot2', 'plotly', 'stargazer', 'prediction',
  'rms', 'dplyr', 'compare', 'BBmisc'

Package suggested but not available for checking: 'gam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'carrier', 'dplyr', 'dynutils', 'magrittr', 'purrr',
  'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'lhs', 'ParamHelpers', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'dynutils', 'dynfeature', 'dyndimred',
  'dynwrap', 'GA', 'ggforce', 'ggplot2', 'ggraph', 'ggrepel', 'igraph',
  'patchwork', 'purrr', 'reshape2', 'tibble', 'tidyr', 'tidygraph',
  'vipor'

Packages suggested but not available for checking:
  'covr', 'hexbin', 'knitr', 'RColorBrewer', 'rje', 'rmarkdown',
  'testthat', 'uwot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'mstate'
Package required but not available: 'rlang'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'corrplot', 'RColorBrewer', 'ggplot2', 'reshape2', 'vegan', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

Packages suggested but not available for checking:
  'MCMCpack', 'quantreg', 'randomForest', 'sandwich', 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'numDeriv', 'xtable', 'latex2exp', 'reshape2', 'plyr',
  'mice', 'magrittr', 'Rdpack', 'fda', 'car', 'stringi', 'tibble',
  'deSolve'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'riverplot', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gridExtra'

Package suggested but not available for checking: 'DataCombine'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'nleqslv', 'splines2', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'modelObj', 'kernlab', 'rgenoud', 'dfoptim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'crayon', 'desc', 'dplyr', 'magrittr', 'proxyC',
  'purrr', 'Rcpp', 'remotes', 'stringr', 'tibble'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'hdf5r', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'babelwhale', 'crayon', 'dplyr', 'dynutils',
  'dynparam', 'igraph', 'glue', 'magrittr', 'purrr', 'processx',
  'readr', 'stringr', 'reshape2', 'tibble', 'tidyr', 'yaml'

Packages suggested but not available for checking:
  'dyndimred', 'hdf5r', 'knitr', 'pkgload', 'ranger', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'TraMineR'

Package suggested but not available for checking: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 9 marked UTF-8 strings
Packages required but not available:
  'DysPIAData', 'Rcpp', 'BiocParallel', 'fastmatch', 'data.table',
  'parmigene'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'proxy'

Packages suggested but not available for checking:
  'mlbench', 'randomForest', 'SparseM', 'xtable', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BBmisc', 'DataCombine', 'signal', 'anytime', 'chron', 'data.table',
  'ggplot2', 'scales', 'accelerometry', 'hms', 'doParallel', 'doSNOW',
  'foreach'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'modeltools', 'Rdpack'

Packages suggested but not available for checking:
  'testthat', 'withr', 'viridisLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinyFiles', 'shinyBS', 'ggplot2', 'ggthemes', 'plotly', 'R.utils',
  'mmap', 'shiny', 'shinythemes', 'shinyjs', 'fontawesome',
  'data.table', 'RcppEigen', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'msm', 'mvtnorm', 'limSolve', 'hdi', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'DT', 'energyr', 'googleVis', 'leaflet', 'plotly', 'shiny',
  'shinydashboard', 'shinytest', 'shinyWidgets'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'betareg', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'distcrete', 'EpiEstim', 'epitrix', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'roxygen2', 'incidence', 'knitr', 'rmarkdown',
  'projections', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'moments', 'tgp', 'tseries', 'fields', 'nortest',
  'quadprog', 'Kendall', 'lmtest', 'som', 'spam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'plotmo', 'TeachingDemos'

Packages suggested but not available for checking: 'gam', 'mda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'R6', 'RcppArmadillo', 'BH'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggmap'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abc', 'pls', 'mnormt', 'lhs', 'tensorA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'purrr', 'tidyr', 'dplyr', 'forcats', 'ggalluvial', 'ggplot2',
  'ggridges', 'RColorBrewer', 'recipes', 'rlang', 'stringr',
  'magrittr', 'tibble', 'gridExtra', 'randomForest', 'progressr',
  'progress'

Packages suggested but not available for checking:
  'testthat', 'covr', 'ISLR', 'nycflights13', 'vdiffr', 'parcats',
  'pkgdown', 'mlbench', 'earth', 'workflows', 'future', 'furrr',
  'e1071', 'caret', 'parsnip', 'vip', 'glmnet', 'xgboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'dplyr', 'stringr', 'tidycensus', 'cli'

Packages suggested but not available for checking:
  'testthat', 'sf', 'purrr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ca', 'vegan', 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'multiCA', 'CATT', 'gmodels', 'psych', 'rcompanion', 'FSA',
  'fitdistrplus', 'nortest'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'PMCMRplus', 'multcomp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'annotate', 'Biobase', 'diffcoexp', 'geneExpressionFromGEO',
  'GEOquery', 'jetset', 'limma', 'magrittr', 'R.utils', 'stringi',
  'xml2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plotly', 'shiny', 'shinycssloaders', 'shinybusy', 'RColorBrewer',
  'DT', 'gtools', 'splus2R'

Packages suggested but not available for checking:
  'AnnotationDbi', 'knitr', 'org.Hs.eg.db', 'qvalue', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'OpenMx'

Package suggested but not available for checking: 'rpf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ncdf4', 'ClimProjDiags', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'assertthat', 'devtools'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pwr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'LaF'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
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  'stringr', 'openssl', 'readxl', 'rlang', 'rprojroot', 'XML'

Packages suggested but not available for checking:
  'pdftools', 'qs', 'rstudioapi', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SSBtools', 'sdcTable', 'shiny'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'RegSDC', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'SpecsVerification', 'pbapply', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'R.rsp', 'verification'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rglpk', 'mathjaxr', 'lpSolve'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'readxl', 'Rsymphony'

Package which this enhances but not available for checking: 'gurobi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RSQLite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'eatDB', 'haven', 'plyr', 'eatTools', 'tibble', 'data.table', 'hms',
  'stringi'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'conflicted', 'ggplot2', 'ggparty', 'partykit', 'ggrepel',
  'Rdpack', 'lpSolveAPI', 'reshape2'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'knitr', 'kableExtra', 'usethis', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'survey', 'BIFIEsurvey', 'progress', 'lavaan', 'Hmisc', 'fmsb',
  'mice', 'car', 'reshape2', 'plyr', 'combinat', 'miceadds', 'tidyr',
  'EffectLiteR', 'estimatr', 'eatTools', 'eatGADS', 'janitor', 'msm',
  'lme4'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
eb: no visible global function definition for 'optimize'
ebalance: no visible global function definition for 'var'
Undefined global functions or variables:
  optimize var
Consider adding
  importFrom("stats", "optimize", "var")
to your NAMESPACE file.
Package required but not available: 'psychotools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'igraph'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ebSNP: no visible global function definition for 'optim'
Undefined global functions or variables:
  optim
Consider adding
  importFrom("stats", "optim")
to your NAMESPACE file.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Running examples in 'echelon-Ex.R' failed
The error most likely occurred in:

> ### Name: echebin
> ### Title: Echelon spatial scan statistic based on Binomial model
> ### Aliases: echebin
> ### Keywords: echelon analysis spatial scan statistic spatial cluster
> ###   deteciotn
> 
> ### ** Examples
> 
> ##Hotspot detection for non-white birth of North Carolina using echelon scan
> 
> #Non-white birth from 1974 to 1984 (case data)
> library(spData)
Error in library(spData) : there is no package called 'spData'
Execution halted
Packages required but not available: 'plot3D', 'animation'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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  'rgeos', 'rvest', 'landscapemetrics', 'tibble', 'xml2', 'dplyr',
  'R.utils', 'httr', 'getPass', 'rlang', 'forcats', 'rasterDT',
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  'rmarkdown', 'stringr', 'tidyr', 'uuid', 'xml2'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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  'doParallel', 'glm2', 'ordinal', 'foreach'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgeos'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'igraph', 'ggplot2'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'foreach'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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  'Rcpp', 'RcppEigen', 'RcppGSL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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GNU make is a SystemRequirements.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'FD'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'biomod2', 'dismo', 'ecodist', 'maptools', 'randomForest', 'raster',
  'rms', 'gtools', 'PresenceAbsence', 'doParallel', 'foreach',
  'iterators', 'classInt', 'vegan', 'poibin', 'snowfall',
  'matrixStats', 'maps', 'ks', 'nabor', 'Hmisc'

Packages suggested but not available for checking:
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  'markdown', 'dplyr', 'rmarkdown', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'deSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GET', 'mvtnorm'

Packages suggested but not available for checking:
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manual.
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  'philentropy', 'plyr', 'purrr', 'reshape', 'rlang', 'Rmisc', 'vegan',
  'vegclust', 'withr'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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  'readr', 'testthat', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking: 'testthat', 'webchem'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Kendall', 'circular'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'utility', 'rivernet', 'jpeg', 'fs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'pracma', 'JOPS', 'quadprog'

Packages suggested but not available for checking:
  'Rsolnp', 'expm', 'foreach', 'doParallel', 'ggplot2', 'ggraph',
  'igraph', 'scales', 'dplyr', 'magrittr', 'nnls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'urca', 'forecast', 'vars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'pbapply', 'kernlab', 'transport'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'tidyverse'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'tidyselect', 'tmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'tibble', 'shiny', 'miniUI', 'tidyr', 'shinyTime', 'lubridate',
  'purrr', 'stringr', 'rlang', 'zoo', 'hms', 'forcats'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'rjson', 'rJython'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'geometry', 'vertexenum'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'CompQuadForm', 'rmutil'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'httr', 'jsonlite'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages suggested but not available for checking:
  'testthat', 'network', 'tidygraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'rjson', 'igraph', 'shiny'

Packages suggested but not available for checking: 'knitr', 'huge'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'edgeR', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'jjb', 'reshape2', 'RcppArmadillo', 'rgen'

Package suggested but not available for checking: 'simcdm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'corpcor'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'miniUI', 'rstudioapi', 'DT', 'tibble', 'dplyr', 'rio',
  'magrittr', 'shinyWidgets', 'openxlsx'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'lpSolveAPI'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plotfunctions', 'data.table'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'xts', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'lbfgs', 'truncnorm', 'nloptr', 'vegan', 'sdpt3r'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'energy', 'dHSIC', 'rBayesianOptimization'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'T2EQ'
Packages required but not available:
  'distr', 'igraph', 'ellipsis', 'simpleboot', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ABCanalysis', 'opGMMassessment'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'mvtnorm', 'lasso2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rstan', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'lfactors', 'data.table', 'Formula', 'glm2', 'haven', 'LaF',
  'lme4', 'NAEPprimer', 'quantreg', 'readxl', 'tibble', 'wCorr',
  'NAEPirtparams', 'WeMix', 'xtable', 'Dire'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'testthat', 'withr', 'rmarkdown', 'RColorBrewer',
  'doParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'httr', 'jsonlite', 'readr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ineq', 'flexsurv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'tibble', 'broom', 'cli', 'withr', 'glue'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'shiny', 'ggplot2', 'ggthemes', 'magrittr', 'rgeos',
  'plotly', 'sp', 'tidyr', 'purrr', 'colourpicker', 'rgdal', 'stringi',
  'tibble', 'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'maptools', 'purrrlyr', 'GGally',
  'corrplot', 'broom', 'scales', 'readr', 'gridExtra', 'tidyverse',
  'spelling', 'ggmap'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'mvtnorm', 'rstanarm', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
geteegdata: no visible global function definition for 'untar'
geteegdata: no visible global function definition for 'read.table'
geteegdata: no visible global function definition for 'write.csv'
geteegdata: no visible global function definition for 'write.table'
Undefined global functions or variables:
  read.table untar write.csv write.table
Consider adding
  importFrom("utils", "read.table", "untar", "write.csv", "write.table")
to your NAMESPACE file.
Packages required but not available:
  'eegkitdata', 'bigsplines', 'ica', 'rgl', 'signal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'emplik', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'forecast', 'Rlibeemd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'forecast', 'nnfor', 'Rlibeemd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rlibeemd', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'forecast', 'Rlibeemd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reshape2', 'colorRamps', 'R.utils', 'sp', 'ggplot2'

Packages suggested but not available for checking:
  'pls', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'dplyr', 'R.matlab', 'pracma', 'rlist', 'viridis',
  'purrr', 'assertthat'

Packages suggested but not available for checking:
  'cdom', 'magrittr', 'testthat', 'knitr', 'rmarkdown', 'ggplot2',
  'plot3D', 'extrafont', 'tidyr', 'shiny', 'DT', 'MBA'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'arm', 'data.table', 'vcd', 'maptools'

Packages suggested but not available for checking:
  'testthat', 'stringr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'lubridate', 'purrr', 'viridis'

Packages suggested but not available for checking:
  'dlnm', 'ggplot2', 'gridExtra', 'knitr', 'rmarkdown', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rifle', 'PMA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'psych', 'polycor', 'EFAtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'psych', 'scales', 'PCovR', 'ggplot2', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'psych', 'crayon', 'stringr', 'ggplot2', 'tibble',
  'magrittr', 'dplyr', 'cli', 'Rcpp', 'viridisLite', 'future.apply',
  'future', 'GPArotation', 'checkmate', 'tidyr', 'progressr',
  'progress', 'rlang', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GPArotation', 'plyr', 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'gridExtra', 'knitr', 'rmarkdown', 'sf',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'copula', 'foreach', 'doParallel', 'waveslim', 'gstat', 'tidyr',
  'dplyr', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown', 'ggplot2', 'RCurl', 'fields',
  'gridExtra', 'animation'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pcalg', 'RBGL', 'igraph'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'qgraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mcclust', 'bayesm', 'GreedyEPL', 'gridExtra', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'shiny', 'ggplot2', 'survey', 'lavaan.survey', 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'seqinr', 'ggplot2', 'shiny', 'reshape2', 'rmarkdown', 'viridis'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayestestR', 'insight', 'parameters', 'performance', 'datawizard'

Packages suggested but not available for checking:
  'correlation', 'see', 'afex', 'BayesFactor', 'brms', 'car', 'covr',
  'emmeans', 'gamm4', 'knitr', 'lavaan', 'lm.beta', 'lme4', 'lmerTest',
  'mediation', 'pscl', 'rmarkdown', 'rms', 'rstanarm', 'rstantools',
  'spelling', 'testthat', 'tidymodels'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Kendall'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'carData', 'lme4', 'colorspace', 'survey', 'estimability', 'insight'

Packages suggested but not available for checking:
  'pbkrtest', 'poLCA', 'heplots', 'ordinal', 'car', 'knitr', 'betareg',
  'alr4', 'robustlmm'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/methods-supported-by-effects.Rnw'
   'inst/doc/partial-residuals.Rnw'
   'inst/doc/predictor-effects-gallery.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
Package unavailable to check Rd xrefs: 'PsumtSim'
Packages required but not available: 'VGAM', 'miscTools'

Packages suggested but not available for checking:
  'DIFlasso', 'DIFboost', 'VGAMdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'VGAM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'tibble'

Packages suggested but not available for checking:
  'broom', 'sandwich', 'testthat', 'patrick', 'rlang', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'TMB', 'dplyr', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readr', 'dplyr', 'ensurer', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'party', 'pROC', 'randomForest', 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'qgraph', 'semPlot', 'igraph', 'lavaan', 'NetworkToolbox', 'glasso',
  'dplyr', 'network', 'GGally', 'wTO', 'fitdistrplus', 'ggpubr',
  'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown', 'kableExtra', 'psych',
  'psychTools', 'tidyselect', 'corpcor', 'plyr', 'matrixcalc',
  'pbapply', 'OpenMx', 'primes', 'purrr', 'shiny', 'shinyjs',
  'shinyalert', 'shinyBS', 'R.matlab', 'readxl', 'gridExtra',
  'rstudioapi', 'RColorBrewer', 'infutil', 'mirt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'coda', 'numbers', 'rootSolve', 'BH',
  'StanHeaders', 'RcppEigen', 'RcppParallel'

Packages suggested but not available for checking:
  'eggCountsExtra', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gridExtra', 'ggplot2', 'gtable'

Packages suggested but not available for checking: 'knitr', 'png'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geoR', 'SpatialTools', 'lme4', 'shiny', 'Rdpack'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'tidygraph', 'srvyr', 'tidyr', 'purrr', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'survey', 'shiny', 'igraph',
  'network', 'haven'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'EGRET', 'binom'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'doParallel', 'iterators', 'rmarkdown',
  'pkgdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dataRetrieval', 'fields', 'truncnorm', 'foreach'

Packages suggested but not available for checking:
  'EGRETci', 'knitr', 'rmarkdown', 'extrafont', 'testthat', 'rkt',
  'doParallel', 'pkgdown', 'png', 'dplyr', 'zyp', 'lubridate', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'purrr', 'mvtnorm', 'matrixStats'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Errors in running code in vignettes:
when running code in 'parametric1.Rnw'
Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  'parametric1.Rnw' using 'UTF-8'... failed to complete the test
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'crayon'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running examples in 'ehelp-Ex.R' failed
The error most likely occurred in:

> ### Name: ehelp
> ### Title: Enhanced-Help Function: ehelp() This function displays docstring
> ###   style comments used as help liners for user defined functions.
> ### Aliases: ehelp
> ### Keywords: internal
> 
> ### ** Examples
> 
> myTestFn <- function(x,y,z,t=0) {
+ #'
+ #' This is just an example of a dummy fn
+ #'
+ #'
+ #' @email myemail@somewhere.org
+ #' @author author
+ #
+ #
+ #' @demo
+ #' @examples myTestFn(x0,y0,z0)
+ }
> 
> ehelp(myTestFn)
Error in loadNamespace(x) : there is no package called 'crayon'
Calls: ehelp ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > #Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'vegdata', 'vegan', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/eHOF.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/eHOF.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'data.table', 'lubridate', 'pkdata'

Packages suggested but not available for checking:
  'glmnet', 'logistf', 'medExtractR', 'knitr', 'rmarkdown', 'ggplot2',
  'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'plotly', 'zoo', 'xts', 'lubridate', 'RColorBrewer',
  'viridis', 'scales'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'BiocStyle', 'dbscan', 'webshot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'xts', 'zoo', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'magrittr', 'httr', 'jsonlite', 'dplyr', 'purrr',
  'memoise', 'lubridate', 'readxl'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'tidyr', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GA', 'snow', 'doSNOW', 'iterators', 'pso', 'ucminf', 'foreach',
  'optimParallel'

Packages suggested but not available for checking:
  'igraph', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'eiPack', 'ei', 'wru', 'censusxy', 'bayestestR', 'coda',
  'data.table', 'doParallel', 'dplyr', 'foreach', 'ggplot2',
  'magrittr', 'mcmcse', 'overlapping', 'purrr', 'rlang', 'sf',
  'stringr', 'tidyr', 'leaflet', 'tidyselect'

Packages suggested but not available for checking:
  'knitr', 'opencage', 'plyr', 'rmarkdown', 'reshape2', 'RColorBrewer',
  'RJSONIO', 'testthat', 'tigris'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
eiginv: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
boot_pr_comp: no visible global function definition for 'cov'
boot_pr_comp: no visible global function definition for 'quantile'
boot_pr_comp: no visible global function definition for 'segments'
boot_pr_comp: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline cov quantile segments
Consider adding
  importFrom("graphics", "abline", "segments")
  importFrom("stats", "cov", "quantile")
to your NAMESPACE file.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gridExtra'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'igraph', 'magrittr', 'shiny', 'entropy'

Packages suggested but not available for checking:
  'testthat', 'RColorBrewer', 'knitr', 'rmarkdown', 'bench'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'glue', 'mathjaxr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'curl'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'eiPack', 'mvtnorm', 'msm', 'tmvtnorm', 'ellipse', 'plotrix',
  'ucminf', 'cubature', 'mnormt', 'foreach', 'sp'

Package suggested but not available for checking: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'blme', 'reshape2', 'optimx', 'magrittr', 'shiny',
  'shinydashboard', 'shinycssloaders', 'readxl', 'ggeffects', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R2jags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'data.table', 'purrr', 'xgboost', 'DALEX', 'ggrepel',
  'ggiraphExtra', 'iBreakDown', 'tidyr', 'scales'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'lightgbm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'isoband', 'ks', 'mapsf', 'sf'

Packages suggested but not available for checking:
  'colorspace', 'ggquiver', 'ggspatial', 'ggthemes', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'seriation', 'shiny', 'dplyr', 'purrr', 'rlang', 'tidyr', 'forcats',
  'RColorBrewer', 'bsplus', 'dendextend', 'haven', 'reshape2', 'shape',
  'shinyWidgets', 'shinydashboard'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'SiZer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'glmnet', 'reshape2', 'cvTools', 'qgraph'

Packages suggested but not available for checking: 'IsingSampler', 'akima'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'crul', 'jsonlite', 'R6'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'PoisNor', 'bindata', 'geepack', 'wgeesel'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'elec'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'data.table', 'haven', 'readr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'usethis'
Packages required but not available: 'dplyr', 'ineq', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gdata', 'shiny', 'devtools', 'shinyjs', 'gnumeric', 'R6',
  'shinydashboard', 'abind', 'stringr', 'lmtest', 'tcltk2', 'reader',
  'readODS', 'readxl', 'EnvStats', 'outliers', 'zoo', 'colourpicker',
  'httpuv'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'raster', 'httr', 'jsonlite', 'progressr', 'sf', 'future',
  'furrr', 'purrr', 'units', 'slippymath'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'formatR', 'rgdal', 'progress'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'emplik', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R2HTML', 'stringi', 'minpack.lm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'pkgdown', 'psych', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Package required but not available: 'rlang'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Runuran', 'pcaPP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'ICSNP', 'doParallel', 'doRNG'

Package suggested but not available for checking: 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'emulator', 'calibrator'
Error(s) in re-building vignettes:
--- re-building 'ellipticpaper.Rnw' using Sweave

Attaching package: 'elliptic'

The following objects are masked from 'package:stats':

    sd, sigma

The following object is masked from 'package:base':

    is.primitive

Loading required package: emulator
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'emulator'
Loading required package: calibrator
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'calibrator'

Error: processing vignette 'ellipticpaper.Rnw' failed with diagnostics:
 chunk 50 (label = bacco_flow) 
Error in p.eqn8.supp(theta = c(0, 1/2), D1 = D1.elliptic, D2 = D2.elliptic,  : 
  could not find function "p.eqn8.supp"

--- failed re-building 'ellipticpaper.Rnw'

--- re-building 'residuetheorem.Rnw' using Sweave
--- finished re-building 'residuetheorem.Rnw'

SUMMARY: processing the following file failed:
  'ellipticpaper.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'KernelKnn', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'psychotools', 'Rdpack', 'RcppArmadillo'

Packages suggested but not available for checking:
  'xtable', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'reshape2', 'BAMMtools', 'magrittr', 'lubridate', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'sna', 'network', 'Rcpp', 'Rdpack', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'aniDom', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'pROC'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'raster'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kinship2', 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'locfit', 'latticeExtra', 'xlsx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DataCombine', 'ggplot2', 'lmerTest', 'sjstats', 'anytime', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'commonmark', 'curl', 'digest', 'dplyr', 'glue',
  'htmltools', 'httr', 'logger', 'magrittr', 'mime', 'purrr',
  'rmarkdown', 'rvest', 'stringi', 'stringr', 'tidyr', 'urltools',
  'xfun', 'xml2'

Packages suggested but not available for checking:
  'cld2', 'cld3', 'gpg', 'here', 'jinjar', 'memoise', 'testthat',
  'roxygen2', 'showtext', 'Microsoft365R'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'rje', 'igraph', 'visNetwork', 'Ckmeans.1d.dp', 'usefun',
  'readr', 'dplyr', 'tidyr', 'tidyselect', 'stringr', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'xfun'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'sp', 'RColorBrewer', 'mnormt', 'maptools', 'RcppArmadillo'

Packages suggested but not available for checking: 'move', 'rgl', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'recipes', 'dplyr', 'generics', 'keras', 'lifecycle', 'purrr',
  'rlang', 'rsample', 'tensorflow', 'tibble', 'tidyr', 'uwot', 'withr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'irlba', 'knitr', 'lme4', 'modeldata',
  'rmarkdown', 'rstanarm', 'testthat', 'VBsparsePCA', 'xgboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FNN', 'ggplot2', 'igraph', 'Rtsne', 'umap', 'uwot'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'optimx', 'numDeriv', 'HelpersMG'

Packages suggested but not available for checking:
  'entropy', 'shiny', 'coda', 'polynom', 'car', 'lmf', 'gam',
  'pbapply', 'cranlogs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages which this enhances but not available for checking:
  'PPtree', 'RColorBrewer'
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'EMD', 'nnfor', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'coda', 'bbmle'

Packages suggested but not available for checking:
  'R2jags', 'ellipse', 'SuppDists', 'numDeriv', 'testthat', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'moments', 'ggplot2', 'MuMIn', 'gridExtra', 'openxlsx', 'reshape2',
  'stringr', 'parallelMap', 'HLMdiag', 'readODS', 'formula.tools',
  'saeRobust', 'spdep'

Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'simFrame', 'laeken', 'rgeos', 'maptools'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fields', 'locfit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'EMD', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FuzzyNumbers', 'DISTRIB'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'moments'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'maxLik'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pscl', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ncdf4', 'units', 'raster', 'sp', 'sf', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'covr', 'osmar', 'RCurl', 'eixport', 'lwgeom', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'zoo', 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'jsonlite', 'jsonld', 'yaml'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'magrittr', 'rmarkdown', 'covr', 'knitr',
  'rdflib', 'jqr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolveAPI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'digest', 'emld', 'jqr', 'jsonlite', 'uuid', 'rmarkdown',
  'dplyr'

Packages suggested but not available for checking:
  'knitr', 'taxadb', 'tibble', 'testthat', 'covr', 'EML', 'units',
  'htmlwidgets', 'shiny', 'shinyjs', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GPArotation', 'limSolve', 'caTools', 'shiny', 'matrixStats'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'reshape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'estimability', 'numDeriv', 'mvtnorm', 'xtable'

Packages suggested but not available for checking:
  'bayesplot', 'bayestestR', 'biglm', 'brms', 'car', 'coda', 'ggplot2',
  'logspline', 'mediation', 'multcomp', 'multcompView', 'ordinal',
  'pbkrtest', 'lme4', 'lmerTest', 'MuMIn', 'rsm', 'knitr', 'rmarkdown',
  'scales', 'testthat'

Packages which this enhances but not available for checking:
  'CARBayes', 'coxme', 'gee', 'geepack', 'MCMCglmm', 'MCMCpack',
  'mice', 'pscl', 'rstanarm', 'sommer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'mclust', 'reshape', 'ggplot2', 'scales', 'RcppArmadillo',
  'BH'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'mvtnorm', 'GGally', 'ggplot2'
Running examples in 'EMMIXmfa-Ex.R' failed
The error most likely occurred in:

> ### Name: rmix
> ### Title: Random Deviates from EMMIX Models
> ### Aliases: rmix
> ### Keywords: multivariate distribution datagen
> 
> ### ** Examples
> 
> set.seed(1)
> model <- mcfa(iris[, -5], g=3, q=2, nkmeans=1, nrandom=1, itmax = 25)

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |...................................                                   |  50%
  |                                                                            
  |......................................................................| 100%
> dat <- rmix(n = 10, model = model)
Error in rmix(n = 10, model = model) : 
  rmix require mvtnorm package. Please `install.packages(mvtnorm)`
Execution halted
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'RUnit'
Packages required but not available:
  'ggplot2', 'proto', 'showtext', 'sysfonts'

Packages suggested but not available for checking:
  'colorspace', 'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tibble', 'stringr', 'glue'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'Kendall', 'geoR'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'rlang', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown', 'testthat', 'Cyclops', 'Sequential'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DESeq2', 'GenomicRanges'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

Package suggested but not available for checking: 'KMsurv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rms'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sampleSelection', 'mvtnorm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mlpack', 'scatterplot3d', 'ggplot2', 'BBmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'stringr', 'uuid', 'base64enc', 'shiny', 'wrassp',
  'jsonlite', 'RSQLite', 'DBI', 'httpuv', 'dplyr', 'readr', 'tibble',
  'purrr', 'tidyr', 'mime', 'rstudioapi', 'httr', 'V8', 'cli'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'compare', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/EMVS_vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Biostrings'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'iterators', 'doParallel', 'hawkes', 'ACDm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'magrittr'
'LazyData' is specified without a 'data' directory
Running examples in 'encode-Ex.R' failed
The error most likely occurred in:

> ### Name: as_factor
> ### Title: Coerce to Factor using Encoding if Present
> ### Aliases: as_factor
> 
> ### ** Examples
> 
> library(magrittr)
Error in library(magrittr) : there is no package called 'magrittr'
Execution halted
Packages suggested but not available for checking:
  'digest', 'pillar', 'readr', 'rlang', 'testthat', 'withr'
Packages unavailable to check Rd xrefs: 'readr', 'rlang'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sodium', 'readr', 'rmarkdown'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'knitr', 'openssl', 'purrr', 'readr', 'rlang'

Packages suggested but not available for checking: 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pbivnorm', 'maxLik', 'statmod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'maxLik', 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pastecs', 'ggplot2'

Packages suggested but not available for checking:
  'hopbyhop', 'Opportunistic'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'energy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'gsl'

Package suggested but not available for checking: 'CompQuadForm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RgoogleMaps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'gdistance', 'rgdal', 'rgeos', 'sp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'glmnet', 'robustHD', 'reshape', 'cvTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'dplyr', 'magrittr', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'sp', 'raster', 'dismo', 'doSNOW', 'doParallel',
  'foreach', 'maxnet', 'dplyr', 'tidyr', 'ggplot2', 'testthat',
  'glmnet', 'rangeModelMetadata', 'rlang'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'rJava', 'spocc', 'RColorBrewer', 'rasterVis',
  'sf', 'blockCV', 'devtools', 'tibble', 'latticeExtra', 'ecospat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'dismo', 'rgeos', 'knitr', 'ggplot2', 'gridExtra', 'lhs',
  'magrittr', 'ENMeval', 'sp', 'spatstat.geom', 'spatstat.random',
  'ggpubr', 'rgdal', 'forcats'

Packages suggested but not available for checking:
  'testthat', 'hypervolume', 'leaflet', 'ecospat', 'randomForest',
  'ranger', 'caret', 'CalibratR', 'ape', 'ResourceSelection', 'fields',
  'reshape2', 'vip', 'pdp', 'fastshap', 'viridis', 'progress'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pls', 'spls', 'foreach', 'doParallel', 'ggplot2', 'reshape2',
  'plotly'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'rjson', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'whisker', 'SuppDists', 'brglm', 'ggplot2', 'knitr', 'rmarkdown'

Packages which this enhances but not available for checking:
  'betareg', 'gnm'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages unavailable to check Rd xrefs: 'betareg', 'gnm'
Packages required but not available:
  'dendextend', 'ggplot2', 'ggdendro', 'seqinr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'kknn', 'gbm', 'e1071', 'randomForest', 'doParallel', 'foreach',
  'glmnet', 'bartMachine'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'chron'

Packages suggested but not available for checking: 'fields', 'maps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'EnsembleBase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ensembleBMA', 'chron', 'evd'

Packages suggested but not available for checking: 'fields', 'maps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'EnsembleBase'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'EnsembleBase', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'ensembleBMA', 'crch', 'gamlss', 'ensembleMOS', 'SpecsVerification',
  'scoringRules', 'glmx', 'ordinal', 'pROC', 'mvtnorm'
Package required but not available: 'caret'

Packages suggested but not available for checking:
  'e1071', 'ipred', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'Biostrings', 'DECIPHER', 'stringr', 'ggplot2', 'reshape2',
  'usethis'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'data.table', 'ggplot2'

Packages suggested but not available for checking:
  'digest', 'ggforce', 'gridExtra', 'knitr', 'magrittr',
  'microbenchmark', 'qwraps2', 'R.rsp', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'magrittr', 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'stringr', 'RYoudaoTranslate'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'EntropyEstimation', 'ggplot2', 'ggpubr', 'reshape2',
  'tibble', 'vegan'

Packages suggested but not available for checking:
  'ade4', 'knitr', 'pkgdown', 'rmarkdown', 'SPECIES', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
diffcv: no visible global function definition for 'sd'
diffcvall: no visible global function definition for 'sd'
diffcvall: no visible global function definition for 'fligner.test'
diffcvall: no visible global function definition for 'p.adjust'
diffcvpFK: no visible global function definition for 'fligner.test'
diffcvpFK: no visible global function definition for 'p.adjust'
diffexp: no visible global function definition for 'var'
diffexp: no visible global function definition for 't.test'
diffexp: no visible global function definition for 'p.adjust'
diffexp2: no visible global function definition for 'var'
diffexp2: no visible global function definition for 't.test'
diffexp2: no visible global function definition for 'p.adjust'
diffnsepperm: no visible global function definition for 'p.adjust'
diffseall: no visible global function definition for 'p.adjust'
Undefined global functions or variables:
  fligner.test p.adjust sd t.test var
Consider adding
  importFrom("stats", "fligner.test", "p.adjust", "sd", "t.test", "var")
to your NAMESPACE file.
Packages required but not available: 'RANN', 'mixtools'

Packages suggested but not available for checking: 'Rmpi', 'snow'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'dplyr', 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'drc', 'lmtest', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'data.table', 'tibble',
  'soiltexture'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'changepoint', 'zoo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'git2r', 'knitr', 'stringr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages unavailable to check Rd xrefs: 'knitr', 'git2r'
Packages required but not available:
  'gstat', 'RCurl', 'dplyr', 'stringi', 'sp', 'maptools', 'zoo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdisop', 'BiocParallel', 'animation', 'RColorBrewer', 'mixtools',
  'data.table'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'xcms', 'MSnbase', 'plotly', 'shiny',
  'rmarkdown', 'DT', 'crosstalk'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'readMzXmlData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'concaveman', 'cvAUC', 'doFuture', 'doRNG', 'fields', 'foreach',
  'future', 'iterators', 'pls', 'raster', 'rgeos', 'ROCR', 'sp',
  'sparr', 'spatstat.geom'

Packages suggested but not available for checking:
  'R.rsp', 'spatstat.data', 'spatstat.random', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'palinsol', 'RSAGA', 'sf', 'knitr'

Package suggested but not available for checking: 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'kSamples', 'fitdistrplus', 'truncdist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'aster', 'caTools', 'aster2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'IDPmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'bio3d', 'phangorn', 'philentropy', 'seqinr', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'changepoint', 'ecp', 'ismev', 'lokern', 'robustbase'

Package suggested but not available for checking: 'openair'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'cli', 'httr2', 'rstudioapi', 'yaml'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'nortest'

Packages suggested but not available for checking:
  'qcc', 'sp', 'tinytest', 'covr', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'officer', 'rvg', 'flextable', 'broom', 'dplyr', 'magrittr',
  'ggplotify', 'R.devices', 'devEMF', 'magick', 'ggplot2',
  'htmlwidgets', 'plotly'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotrix'

Package suggested but not available for checking: 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'testthat', 'epanetReader'
Found the following significant warnings:
  report.c:1466:31: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 1 and 8 [-Wformat-overflow=]
See 'C:/r_packages/pkgcheck/CRAN/epanet2toolkit/epanet2toolkit.Rcheck/00install.out' for details.
Running examples in 'epanet2toolkit-Ex.R' failed
The error most likely occurred in:

> ### Name: ENepanet
> ### Title: ENepanet
> ### Aliases: ENepanet
> 
> ### ** Examples
> 
> # path to Net1.inp example file included with this package
> inp <- file.path( find.package("epanet2toolkit"), "extdata","Net1.inp") 
> print(inp)
[1] "C:/r_packages/pkgcheck/CRAN/epanet2toolkit/epanet2toolkit.Rcheck/epanet2toolkit/extdata/Net1.inp"
> ENepanet( inp, "Net1.rpt") 
> # try opening Net1.rpt in a text editor or reading it back
> # into R with the read.rpt() function in package epanetReader
> myRpt <- epanetReader::read.rpt("Net1.rpt")
Error in loadNamespace(x) : there is no package called 'epanetReader'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.r'
Running the tests in 'tests/testthat.r' failed.
Complete output:
  > #*****************************************
  > #
  > # (C) Copyright IBM Corp. 2017
  > # Author: Ernesto Arandia & Bradley J Eck
  > #
  > #*****************************************
  > 
  > 
  > 
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'testthat', 'epanet2toolkit', 'data.table'
Running 'testthat.r'
Running the tests in 'tests/testthat.r' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'clue', 'irlba', 'imager', 'matlab', 'RSpectra', 'tidyverse',
  'GPArotation'

Packages suggested but not available for checking:
  'elasticnet', 'ggcorrplot', 'rmarkdown', 'markdown', 'reshape2',
  'matlabr', 'knitr', 'PMA'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'ggplot2', 'httr', 'cowplot', 'sp', 'nls2', 'readxl',
  'raster', 'proto', 'rlang', 'rgdal', 'formattable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'hamlet', 'timeROC', 'pracma', 'Bolstad2', 'impute'

Packages suggested but not available for checking: 'ROCR', 'c060', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
Packages required but not available:
  'dplyr', 'expss', 'assertthat', 'purrr', 'tibble', 'stringr',
  'magrittr', 'glue', 'readxl', 'janitor', 'questionr', 'tidyr',
  'readr', 'curl', 'attempt', 'zoo', 'tidyverse', 'leaflet',
  'htmltools', 'rlang', 'rvest', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'lubridate', 'covr', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'igraph', 'visNetwork', 'threejs', 'colorspace'

Packages suggested but not available for checking:
  'outbreaks', 'testthat', 'covr', 'shiny', 'readr', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'ISOweek', 'scales', 'timeDate', 'RColorBrewer',
  'tibble'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'httr', 'jsonlite', 'dplyr', 'rvest', 'xml2', 'tidyr',
  'readr', 'stringi', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'rstan', 'rstantools', 'magrittr', 'rstanarm',
  'lme4', 'ggplot2', 'scales', 'Rdpack', 'zoo', 'tidyr', 'rlang',
  'bayesplot', 'hrbrthemes', 'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'gridExtra', 'bookdown', 'EpiEstim',
  'lubridate', 'kableExtra', 'extrafont'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'DBI', 'odbc', 'phonics', 'purrr', 'readr', 'stringi',
  'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'deSolve', 'reshape2', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coarseDataTools', 'reshape2', 'ggplot2', 'gridExtra',
  'fitdistrplus', 'coda', 'incidence', 'scales'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'dplyr', 'ggplot2', 'knitr', 'tidyr', 'DescTools',
  'minpack.lm', 'magrittr', 'tibble'

Packages suggested but not available for checking:
  'rmarkdown', 'ggridges', 'cowplot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'epicontacts', 'leaflet', 'ggmap', 'geosphere', 'ggplot2', 'tibble',
  'sp', 'htmlwidgets', 'htmltools', 'visNetwork'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'outbreaks', 'vdiffr', 'curl',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'tibble', 'httr', 'glue', 'purrr', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'rmarkdown', 'spelling', 'devtools',
  'usethis', 'pkgdown', 'styler', 'lintr', 'covr', 'igraph', 'gtools',
  'stringr', 'dplyr', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'adaptMCMC', 'LaplacesDemon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'binom', 'scales', 'dplyr', 'rlang', 'forcats', 'tidyr', 'tibble',
  'glue', 'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'outbreaks', 'epidict', 'covr', 'knitr', 'magrittr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'coda', 'progress', 'crayon', 'EpiEstim', 'ggplot2',
  'gridExtra', 'RcppArmadillo'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'deSolve', 'polspline'

Packages suggested but not available for checking:
  'ade4', 'bbmle', 'fields', 'forecast', 'imputeTS', 'lme4', 'ncf',
  'nleqslv', 'nlts', 'plotrix', 'pomp', 'rootSolve', 'Rwave', 'statnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'networkDynamic', 'tergm', 'statnet.common', 'doParallel',
  'ergm', 'foreach', 'network', 'RColorBrewer', 'ape', 'lazyeval',
  'ggplot2', 'tibble', 'dplyr', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'network'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GA', 'ggplot2', 'igraph', 'Rcpp', 'RcppAlgos', 'reshape2', 'vcfR'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cowplot', 'data.table', 'futile.logger', 'future', 'future.apply',
  'ggplot2', 'lubridate', 'patchwork', 'progressr', 'purrr', 'R.utils',
  'Rcpp', 'rlang', 'rstan', 'runner', 'scales', 'truncnorm',
  'lifecycle', 'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'countrycode', 'dplyr', 'EpiSoon', 'forecastHybrid', 'here',
  'kableExtra', 'knitr', 'magrittr', 'rmarkdown', 'rnaturalearth',
  'rstantools', 'spelling', 'tidyr', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cmprsk', 'etm', 'purrr', 'plyr', 'dplyr', 'numDeriv', 'data.table',
  'zoo'

Packages suggested but not available for checking:
  'mstate', 'lme4', 'popEpi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'officer', 'flextable', 'zoo', 'png', 'dplyr', 'tidyr', 'tidyselect',
  'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BiasedUrn', 'pander', 'sf', 'lubridate', 'zoo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'RColorBrewer', 'ggplot2', 'plyr', 'rgdal',
  'scales', 'spData', 'spatstat', 'maptools', 'rgeos', 'mapproj',
  'tidyverse', 'kableExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'triangle', 'trapezoid', 'actuar', 'dagitty', 'ggdag',
  'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'aplore3', 'directlabels',
  'tidyverse', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ISOweek', 'rmarkdown', 'shiny', 'surveillance'

Packages suggested but not available for checking:
  'DT', 'ggplot2', 'knitr', 'pander'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nloptr', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glasso', 'tmvtnorm', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'epiR', 'dplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolve'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kableExtra', 'knitr', 'xml2'

Packages suggested but not available for checking: 'dplyr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sodium', 'distcrete', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'outbreaks', 'incidence', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'dplyr', 'crul', 'curl', 'DT', 'future', 'httpuv', 'httr',
  'htmltools', 'jsonlite', 'keyring', 'knitr', 'emayili', 'ggplot2',
  'janitor', 'magrittr', 'plotly', 'rtweet', 'readxl', 'rlang',
  'rmarkdown', 'rnaturalearthdata', 'openxlsx', 'plyr', 'shiny', 'sp',
  'stringr', 'tibble', 'tidyverse', 'tidytext', 'tokenizers', 'xtable',
  'xml2'

Package suggested but not available for checking: 'taskscheduleR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
FCIplot: no visible global function definition for 'na.omit'
FCIplot: no visible global function definition for 'tail'
FCIplot: no visible global function definition for 'grid'
FCIplot: no visible global function definition for 'polygon'
FCIplot: no visible global function definition for 'rgb'
linpred: no visible global function definition for 'lm'
mplott: no visible global function definition for 'par'
mplott: no visible global function definition for 'na.omit'
mplott: no visible global function definition for 'lines'
mplott: no visible global function definition for 'legend'
mplott: no visible global function definition for 'grid'
plott: no visible global function definition for 'lines'
plott: no visible global function definition for 'par'
plott: no visible global function definition for 'grid'
tsideplot: no visible global function definition for 'par'
tsideplot: no visible global function definition for 'axis'
tsideplot: no visible global function definition for 'grid'
Undefined global functions or variables:
  axis grid legend lines lm na.omit par polygon rgb tail
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "axis", "grid", "legend", "lines", "par",
             "polygon")
  importFrom("stats", "lm", "na.omit")
  importFrom("utils", "tail")
to your NAMESPACE file.
Packages required but not available:
  'callr', 'checkmate', 'cli', 'crayon', 'data.table', 'hms',
  'lubridate', 'processx', 'progress', 'R6', 'RSQLite', 'stringi',
  'units'

Packages suggested but not available for checking:
  'decido', 'rgl', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'tidyselect', 'tibble', 'vctrs', 'ellipsis',
  'rlang', 'units', 'lubridate', 'magrittr'

Packages suggested but not available for checking:
  'usethis', 'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lassoshooting', 'irr', 'elasticnet'

Package suggested but not available for checking: 'graph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'hash', 'ggplot2', 'testthat', 'gridExtra', 'TopKLists', 'stringr',
  'xtable', 'mongolite', 'VennDiagram', 'cowplot'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'sf', 'rgeos', 'maptools', 'flexclust', 'plyr', 'osrm',
  'deldir', 'dplyr', 'rgdal', 'leaflet', 'leaflet.extras', 'nngeo',
  'curl', 'httr', 'assertthat'

Packages suggested but not available for checking:
  'knitr', 'devtools', 'roxygen2', 'markdown', 'rstudioapi', 'remotes',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'car', 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # Copyright 2019-2019 Steven E. Pav. All Rights Reserved.
  > # Author: Steven E. Pav
  > 
  > # This file is part of epsiwal.
  > #
  > # epsiwal is free software: you can redistribute it and/or modify
  > # it under the terms of the GNU Lesser General Public License as published by
  > # the Free Software Foundation, either version 3 of the License, or
  > # (at your option) any later version.
  > #
  > # epsiwal is distributed in the hope that it will be useful,
  > # but WITHOUT ANY WARRANTY; without even the implied warranty of
  > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > # GNU Lesser General Public License for more details.
  > #
  > # You should have received a copy of the GNU Lesser General Public License
  > # along with epsiwal.  If not, see <http://www.gnu.org/licenses/>.
  > 
  > # env var:
  > # nb: 
  > # see also:
  > # todo:
  > # changelog: 
  > #
  > # Created: 2019-06-10
  > # Copyright: Steven E. Pav, 2019-2019
  > # Author: Steven E. Pav
  > # Comments: Steven E. Pav
  > 
  > # because Hadley says it should be like this.
  > # see https://github.com/hadley/devtools/wiki/Testing
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'xml2', 'xslt', 'magrittr', 'tibble', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'readr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'data.table', 'eplusr', 'future.apply', 'fst',
  'jsonlite', 'progressr', 'psychrolib', 'rappdirs', 'RNetCDF', 'units'

Packages suggested but not available for checking:
  'testthat', 'pingr', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'randomForest', 'doRNG', 'doParallel', 'rngtools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'shiny', 'DT', 'mime', 'readxl', 'ggplot2', 'ggiraph',
  'ggiraphExtra', 'shinycssloaders', 'shinyWidgets', 'FSA',
  'PMCMRplus', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'shiny'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'ttutils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lavaan', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'mvtnorm'
Running examples in 'equalCovs-Ex.R' failed
The error most likely occurred in:

> ### Name: equalCovs
> ### Title: Testing the equality of two covariance matrices.
> ### Aliases: equalCovs
> ### Keywords: covariance matrices
> 
> ### ** Examples
> 
> library(mvtnorm)
Error in library(mvtnorm) : there is no package called 'mvtnorm'
Execution halted
Package required but not available: 'lavaan'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'semTools', 'printr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'xslt', 'locatexec'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'statmod', 'mirt'

Packages suggested but not available for checking:
  'knitr', 'ltm', 'rmarkdown', 'sna'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'equateIRT', 'numDeriv', 'statmod', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ltm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
The following files contain a license that requires
distribution of original sources:
  'upgreek.sty'
Please ensure that you have complied with it.
Packages required but not available:
  'broom', 'broom.mixed', 'shiny', 'knitr'

Packages suggested but not available for checking:
  'covr', 'shinyWidgets', 'forecast', 'ggplot2', 'latex2exp', 'lme4',
  'ordinal', 'rmarkdown', 'testthat', 'texPreview', 'gtsummary'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'eha'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'PairedData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'polynom', 'rootSolve', 'cubature', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'BiasedUrn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'ncdf4', 'nnls', 'igraph', 'signal', 'quantreg', 'XML'

Packages suggested but not available for checking: 'R.rsp', 'mzR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'vctrs', 'rlang', 'pillar'

Packages suggested but not available for checking:
  'tibble', 'testthat', 'covr', 'knitr', 'rmarkdown', 'dplyr',
  'spelling', 'purrr', 'tidyr', 'lubridate'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'poweRlaw', 'evir'
Running examples in 'ercv-Ex.R' failed
The error most likely occurred in:

> ### Name: Tm
> ### Title: Multiple threshold test for a GPD
> ### Aliases: Tm
> ### Keywords: ercv
> 
> ### ** Examples
> 
> data("nidd.thresh",package = "evir")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called 'evir'
Calls: data -> find.package
Execution halted
Packages required but not available:
  'lmtest', 'systemfit', 'tseries', 'urca'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'numDeriv', 'statnet.common', 'ergm', 'network', 'btergm', 'sna'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'lda', 'quadprog', 'igraph', 'viridis', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ergm', 'network', 'statnet.common'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ergm', 'egor', 'network', 'statnet.common', 'coda', 'RColorBrewer',
  'purrr', 'tibble', 'dplyr', 'survey'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ergm', 'network', 'Rcpp', 'texreg', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'sna', 'lmtest', 'fmcmc', 'coda', 'knitr', 'rmarkdown',
  'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ergm', 'network', 'statnet.common'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'network', 'robustbase', 'coda', 'trust', 'lpSolveAPI',
  'statnet.common', 'rle', 'purrr', 'rlang', 'memoise', 'tibble'

Packages suggested but not available for checking:
  'latticeExtra', 'sna', 'snow', 'latentnet', 'rmarkdown', 'knitr',
  'Rmpi', 'testthat', 'magrittr', 'tergm', 'ergm.count',
  'ergm.userterms', 'networkDynamic', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'network', 'ergm', 'statnet.common'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'knitr', 'rstudioapi'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'colorspace', 'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'signal', 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'corpcor', 'irlba', 'fdrtool', 'mnormt', 'pacman'

Packages suggested but not available for checking:
  'prettydoc', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rpanel'

Package suggested but not available for checking: 'akima'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'rlang'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'scales', 'gridExtra', 'glmnet', 'pls', 'plsVarSel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'VGAM', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'searcher'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'validate', 'lpSolveAPI'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'vctrs', 'pillar', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'simcdm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'miniUI', 'RColorBrewer', 'ggplot2', 'car', 'leaps',
  'broom', 'dplyr', 'tidyr', 'purrr', 'combinat'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CircStats', 'ggplot2', 'pbapply', 'plotly', 'raster', 'rasterVis',
  'tiff'

Packages suggested but not available for checking:
  'knitr', 'pander', 'gridExtra', 'plyr', 'rmarkdown', 'sf', 'sp',
  'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'svd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'doParallel', 'mvnfast', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'plyr', 'readODS', 'readxl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'esreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'tidyr', 'tidyselect', 'stringr', 'purrr',
  'tibble', 'gtools', 'dfcrm', 'BOIN', 'trialr', 'DiagrammeR',
  'RColorBrewer', 'viridis', 'binom'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'metafor'
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'magrittr', 'purrr', 'rlang', 'ROCR', 'sf', 'shiny', 'units'

Packages suggested but not available for checking:
  'colorRamps', 'colourpicker', 'dichromat', 'DT', 'knitr', 'leafem',
  'leaflet', 'maps', 'maptools', 'raster', 'RColorBrewer', 'rmarkdown',
  'shinybusy', 'shinydashboard', 'shinyjs', 'testthat', 'tmap',
  'viridis', 'zip'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'XML', 'parmigene'

Package suggested but not available for checking: 'graph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'multitaper', 'raster', 'rgdal', 'caTools', 'signal', 'fftw',
  'matrixStats', 'IRISSeismic', 'XML', 'shiny', 'shinyFiles',
  'rmarkdown', 'reticulate', 'EMMAgeo', 'limSolve', 'extraDistr',
  'minpack.lm', 'Rcpp'

Packages suggested but not available for checking:
  'plot3D', 'rgl', 'seewave'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fracdiff', 'smoots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'chron', 'data.table', 'ggplot2', 'gtools', 'scales',
  'reshape2', 'rjags'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'ggplot2', 'readr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'datamods', 'ggplot2', 'htmltools', 'jsonlite', 'phosphoricons',
  'rlang', 'rstudioapi', 'scales', 'shiny', 'shinyWidgets'

Packages suggested but not available for checking:
  'officer', 'rvg', 'rio', 'testthat', 'knitr', 'rmarkdown',
  'ggthemes', 'hrbrthemes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
cv.ES: no visible binding for global variable 'var'
Undefined global functions or variables:
  var
Consider adding
  importFrom("stats", "var")
to your NAMESPACE file.
Packages required but not available:
  'quantreg', 'Rcpp', 'Formula', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'igraph'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'httr', 'haven', 'rvest', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyverse', 'dplyr', 'tidyr', 'plotly', 'ggplot2', 'rio',
  'data.table', 'magrittr', 'shiny', 'shinydashboard', 'knitr',
  'gridExtra', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'purrr', 'readr', 'dplyr', 'tibble', 'rlang'

Packages suggested but not available for checking: 'testthat', 'keyring'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'brms', 'lme4', 'dplyr', 'magrittr', 'tidyr', 'ggplot2', 'rlang',
  'foreach', 'doParallel', 'cowplot'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'igraph', 'qgraph', 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'mvtnorm', 'JGL', 'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DEoptim', 'stringr', 'BBmisc', 'Rdpack', 'numDeriv', 'matrixStats',
  'autoimage'

Packages suggested but not available for checking:
  'gamlss.dist', 'knitr', 'rmarkdown', 'AdequacyModel', 'readr',
  'covr', 'testthat', 'vdiffr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'generics', 'Rcpp', 'rlang', 'RcppEigen'

Packages suggested but not available for checking:
  'fabricatr', 'randomizr', 'AER', 'clubSandwich', 'emmeans',
  'estimability', 'ivpack', 'margins', 'modelsummary', 'prediction',
  'RcppEigen', 'sandwich', 'stargazer', 'testthat', 'car'

Package which this enhances but not available for checking: 'texreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'reshape2', 'ggplot2', 'goftest', 'testthat', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'doParallel', 'gridExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'metaBLUE'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'PSCBS', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'estoutstorage'
descsto: no visible global function definition for 'is'
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Packages required but not available:
  'lazyeval', 'minpack.lm', 'Formula', 'gmm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.Transition: no visible global function definition for 'rnorm'
.Transition.DC: no visible global function definition for 'runif'
Simu.Cond.HR: no visible global function definition for 'rpois'
Simu.Cond.HR: no visible global function definition for 'runif'
Simu.Cond.HR: no visible global function definition for 'hist'
Simu.Cond.HR: no visible global function definition for 'var'
Simu.HR: no visible global function definition for 'rpois'
Simu.HR: no visible global function definition for 'runif'
Simu.HR: no visible global function definition for 'hist'
Simu.HR: no visible global function definition for 'var'
Undefined global functions or variables:
  hist rnorm rpois runif var
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "rnorm", "rpois", "runif", "var")
to your NAMESPACE file.
Packages required but not available:
  'quantmod', 'zoo', 'matrixStats', 'Rcpp', 'curl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'purrr', 'shiny', 'shinyFeedback',
  'shinyWidgets', 'DT', 'bslib', 'stringr', 'magrittr', 'formattable',
  'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sfsmisc', 'ggplot2', 'magrittr', 'dplyr', 'rlang', 'tidyr', 'purrr',
  'Hmisc', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'viridisLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Hmisc'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mapdata', 'fields', 'maps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maps', 'goftest', 'spatstat.geom', 'spatstat.core',
  'spatstat.random', 'Rcpp', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking:
  'SimComp', 'multcomp', 'mratios'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'httr', 'jsonlite', 'Rmpfr'

Packages suggested but not available for checking: 'testthat', 'httptest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'circlize', 'cowplot', 'dplyr', 'ggalluvial', 'ggplot2', 'ggridges',
  'reshape2', 'magrittr'

Packages suggested but not available for checking:
  'broom', 'knitr', 'pbapply', 'rmarkdown', 'tidyr', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geometry', 'data.table', 'SNPRelate', 'gdsfmt', 'plot3D'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'DBI', 'downloader', 'fs', 'janitor', 'lubridate', 'readr',
  'rlang', 'rvest', 'tibble', 'usethis', 'xml2'

Packages suggested but not available for checking:
  'dbplyr', 'knitr', 'RSQLite', 'RPostgreSQL', 'RMySQL', 'ggplot2',
  'testthat', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'ggplot2', 'dplyr', 'dbplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ff', 'bit'

Packages suggested but not available for checking:
  'RSQLite', 'zoo', 'DBI', 'RODBC', 'RJDBC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'data.table', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggplot2', 'kmi', 'geepack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'httr', 'urltools', 'dplyr', 'rvest', 'purrr', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyr', 'xslt', 'dplyr', 'xml2', 'magrittr', 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'stringr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'graph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GenSA', 'polyclip', 'polylabelr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'knitr', 'pBrackets', 'RConics', 'rmarkdown', 'testthat',
  'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'xml2', 'tidyr', 'httr', 'curl', 'rvest',
  'rlang', 'stringr', 'readr', 'pdftools', 'antiword'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidytext', 'wordcloud', 'purrr', 'ggplot2',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'magrittr', 'ncdf4', 'ncdf4.helpers', 'fs', 'PCICt',
  'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'plyr', 'dplyr', 'progress', 'urltools', 'purrr',
  'xml2', 'tibble', 'tidyr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'dplyr', 'tidyr', 'readr'
Packages required but not available:
  'shiny', 'VGAM', 'data.table', 'plyr', 'clinfun'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'classInt', 'countrycode', 'curl', 'dplyr', 'httr',
  'jsonlite', 'lubridate', 'rappdirs', 'readr', 'RefManageR',
  'regions', 'stringi', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'RColorBrewer', 'knitr', 'rmarkdown', 'sf', 'sp', 'testthat',
  'remotes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'tfplot', 'dse', 'setRNG', 'tframe'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'agricolae', 'car', 'dplyr', 'entropy', 'ggcorrplot', 'ggplot2',
  'gridExtra', 'kSamples', 'mathjaxr', 'psych', 'reshape2', 'Rdpack',
  'vegan'

Packages suggested but not available for checking:
  'ccChooser', 'corehunter', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'testthat'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ggplot2', 'metafor', 'metadat', 'MetaUtility', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'EnvStats'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'SpatialExtremes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'FNN'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FNN', 'R.utils', 'limSolve', 'mclust', 'quadprog', 'plyr'

Package suggested but not available for checking: 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
powerSet : <anonymous>: no visible global function definition for
  'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
mposterior: no visible global function definition for 'optim'
rl.pred: no visible global function definition for 'matplot'
rl.pst: no visible binding for global variable 'quantile'
rl.pst: no visible global function definition for 'matplot'
Undefined global functions or variables:
  matplot optim quantile
Consider adding
  importFrom("graphics", "matplot")
  importFrom("stats", "optim", "quantile")
to your NAMESPACE file.
Package suggested but not available for checking: 'akima'
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'EventDetectR', 'shinyBS', 'shiny', 'shinydashboard', 'shinyjs',
  'XML', 'plotly', 'DT', 'ggplot2'

Packages suggested but not available for checking:
  'roxygen2', 'shinytest', 'testthat', 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'imputeTS', 'forecast', 'ggplot2', 'gridExtra', 'neuralnet'

Packages suggested but not available for checking:
  'testthat', 'caret', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sandwich', 'geepack'

Packages suggested but not available for checking:
  'testthat', 'prodlim', 'knitr', 'rmarkdown', 'rio', 'data.table'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmutil'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'purrr', 'dplyr', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'tensorA', 'glmnet', 'AtmRay', 'dbscan', 'changepoint'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'shiny', 'miniUI', 'rstudioapi', 'httr', 'curl',
  'jsonlite', 'magrittr', 'data.table', 'testthat', 'dplyr', 'tidyr',
  'rlang', 'scales', 'tidyquant', 'RColorBrewer', 'stringr', 'purrr',
  'readr', 'openxlsx'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'muhaz'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rpact', 'fitdistrplus', 'gestate'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ProfileLikelihood', 'sandwich', 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sensitivitymv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rstan', 'rstanarm', 'loo', 'LearnBayes', 'LaplacesDemon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'meta', 'EmpiricalCalibration', 'rJava',
  'BeastJar', 'Cyclops', 'HDInterval', 'coda', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'sn'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sensitivity2x2xk', 'sensitivitymult', 'sensitivitymv', 'senstrat',
  'DOS2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gsl', 'SparseM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'seqinr', 'ape', 'geiger', 'shiny', 'phytools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'reshape2', 'ggplot2', 'vegan', 'ape', 'expm', 'mvtnorm',
  'coda', 'igraph', 'MCMCpack', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'foreach', 'magrittr', 'gridExtra',
  'doParallel', 'cowplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'geometry', 'ggplot2', 'interp', 'reshape2', 'rgl'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'ape', 'lme4'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'geomorph', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rrepast', 'futile.logger', 'reshape', 'ggplot2', 'deSolve',
  'plot3D', 'plyr', 'data.table', 'RNetLogo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'evd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RANN', 'evd', 'fitdistrplus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'partykit'

Packages suggested but not available for checking:
  'Formula', 'kernlab', 'mlbench', 'multcomp', 'party', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'rjags', 'coda', 'ggplot2', 'foreach', 'doParallel',
  'doRNG'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
EW : PhiP : Phi: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm
Consider adding
  importFrom("stats", "pnorm")
to your NAMESPACE file.
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'exactci', 'ssanv'

Packages suggested but not available for checking:
  'testthat', 'Exact', 'ggplot2', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
BinomialCIone: no visible global function definition for 'na.omit'
PairedCIone: no visible global function definition for 'na.omit'
Undefined global functions or variables:
  na.omit
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.
Packages required but not available: 'ssanv', 'testthat'

Packages suggested but not available for checking:
  'rmarkdown', 'BlakerCI', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'raster', 'sf'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rgdal', 'rmarkdown', 'testthat', 'terra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
build.mcx.obj: no visible global function definition for 'glm'
build.mcx.obj: no visible binding for global variable 'poisson'
build.mcx.obj: no visible global function definition for 'fitted'
cab: no visible global function definition for 'rbinom'
cab: no visible global function definition for 'runif'
mcexact: no visible global function definition for 'update'
rounded.tprob: no visible global function definition for 'pt'
simtable.cab: no visible global function definition for 'rbinom'
simtable.cab: no visible global function definition for 'runif'
Undefined global functions or variables:
  fitted glm poisson pt rbinom runif update
Consider adding
  importFrom("stats", "fitted", "glm", "poisson", "pt", "rbinom",
             "runif", "update")
to your NAMESPACE file.
Package required but not available: 'logistf'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rootSolve'

Package suggested but not available for checking: 'ExactData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'fs', 'magrittr', 'ore', 'purrr', 'readr', 'rlang',
  'roxygen2', 'rstudioapi', 'strex', 'stringr', 'styler', 'usethis',
  'withr'

Packages suggested but not available for checking:
  'clipr', 'covr', 'crayon', 'knitr', 'pacman', 'rmarkdown',
  'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'exams', 'glue', 'stringr', 'stringi', 'xml2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'exams', 'glue', 'stringr', 'stringi', 'pkgbuild', 'xml2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'base64enc', 'knitr', 'magick', 'png', 'RCurl', 'RJSONIO',
  'rmarkdown', 'tinytex', 'tth'
Packages unavailable to check Rd xrefs: 'RJSONIO', 'RCurl', 'knitr', 'tth', 'rmarkdown', 'png'
Running examples in 'exams-Ex.R' failed
The error most likely occurred in:

> ### Name: exams2blackboard
> ### Title: Generation of Exams in Blackboard Format
> ### Aliases: exams2blackboard make_itembody_blackboard
> ### Keywords: utilities
> 
> ### ** Examples
> 
> ## load package and enforce par(ask = FALSE)
> library("exams")
> options(device.ask.default = FALSE)
> 
> ## define an exams (= list of exercises)
> myexam <- list(
+   "boxplots",
+   "ttest",
+   "anova",
+   "scatterplot",
+   "relfreq"
+ )
> 
> ## output directory
> dir.create(mydir <- tempfile())
> 
> ## generate .zip with Blackboard exam in temporary directory
> exams2blackboard(myexam, n = 3, dir = mydir)
Loading required namespace: tth
Failed with error:  'there is no package called 'tth''
Error in make_exercise_transform_html(converter = converter, base64 = base64,  : 
  requireNamespace("tth") is not TRUE
Calls: exams2blackboard -> make_exercise_transform_html -> stopifnot
Execution halted
Errors in running code in vignettes:
when running code in 'exams2.Rnw'

> options(width = 76, prompt = "R> ", continue = "+  ")

> library("exams")

> library("base64enc")

  When sourcing 'exams2.R':
Error: there is no package called 'base64enc'
Execution halted

  'exams.Rnw'... OK
  'exams2.Rnw'... failed
Error(s) in re-building vignettes:
--- re-building 'exams.Rnw' using Sweave
Loading required namespace: tinytex
Failed with error:  'there is no package called 'tinytex''
Loading required namespace: tinytex
Failed with error:  'there is no package called 'tinytex''
Loading required namespace: tinytex
Failed with error:  'there is no package called 'tinytex''
Loading required namespace: tinytex
Failed with error:  'there is no package called 'tinytex''
Loading required namespace: tinytex
Failed with error:  'there is no package called 'tinytex''
Loading required namespace: tinytex
Failed with error:  'there is no package called 'tinytex''
Loading required namespace: tinytex
Failed with error:  'there is no package called 'tinytex''
Loading required namespace: tinytex
Failed with error:  'there is no package called 'tinytex''
Loading required namespace: tinytex
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Files named as vignettes but with no recognized vignette engine:
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(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyr', 'dplyr', 'ggplot2', 'corrplot', 'multiwayvcov', 'lmtest',
  'plm', 'stargazer', 'scales', 'shiny', 'DT', 'openssl', 'tictoc',
  'shinycssloaders', 'kableExtra', 'rio', 'zip', 'rlang'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'weaana', 'tidyr', 'tidyverse', 'magrittr', 'reshape2', 'stringr',
  'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'smoof', 'cec2013'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  Error in library(testthat) : there is no package called 'testthat'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'e1071', 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'mediation', 'remotes', 'shiny', 'shinydashboard', 'weights'

Package suggested but not available for checking: 'moments'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'gridExtra', 'magrittr', 'rlang', 'rmarkdown', 'rpart.plot', 'shiny',
  'stringr', 'tibble', 'tidyr'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'scatterD3', 'RColorBrewer'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'foreach', 'glmnet', 'polspline', 'e1071', 'xgboost', 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maditr', 'data.table', 'htmlTable', 'matrixStats'

Packages suggested but not available for checking:
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  'testthat', 'openxlsx', 'fst', 'huxtable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'glue', 'lifecycle', 'magrittr', 'pillar', 'purrr', 'rlang',
  'stringr', 'tibble', 'tidyr', 'tidyselect', 'withr'

Packages suggested but not available for checking:
  'covr', 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'ggplot2', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quantreg', 'mnormt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'markdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'optimx'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'tidyr', 'lazyeval'

Packages suggested but not available for checking: 'testthat', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'assertthat', 'numDeriv'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'rmeta'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
bars: no visible global function definition for 'segments'
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cv.normal: no visible binding for global variable 'var'
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cv.poisson: no visible binding for global variable 'var'
cv.poisson: no visible global function definition for 'abline'
plot.extlasso: no visible global function definition for 'matplot'
plot.extlasso: no visible global function definition for 'axis'
Undefined global functions or variables:
  abline axis matplot segments var
Consider adding
  importFrom("graphics", "abline", "axis", "matplot", "segments")
  importFrom("stats", "var")
to your NAMESPACE file.
exbio: no visible global function definition for 'as.formula'
exbio: no visible global function definition for 'glm'
exbio: no visible binding for global variable 'gaussian'
exbio: no visible global function definition for 'Gamma'
exbio: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  Gamma as.formula gaussian glm pchisq
Consider adding
  importFrom("stats", "Gamma", "as.formula", "gaussian", "glm", "pchisq")
to your NAMESPACE file.
Packages required but not available: 'raster', 'rgdal', 'sp', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'LaplacesDemon', 'VGAM', 'evd', 'hoa', 'skellam',
  'triangle', 'actuar'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'extrafontdb', 'Rttf2pt1'

Package suggested but not available for checking: 'fontcm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'chk', 'lifecycle'

Packages suggested but not available for checking:
  'covr', 'hms', 'knitr', 'rlang', 'testthat', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'rJava'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'dplyr', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'numDeriv', 'evd', 'sn', 'CompRandFld', 'quadprog', 'copula',
  'nloptr', 'gtools', 'mvtnorm', 'fda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'evd', 'copula', 'mvtnorm', 'plot3D', 'tmvtnorm', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Lmoments', 'distillery'

Package suggested but not available for checking: 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'ismev', 'fExtremes', 'extRemes', 'evd', 'Renext'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gWidgets2', 'gWidgets2tcltk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'emplik', 'evd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
bootstrapCMLE: no visible global function definition for 'qweibull'
bootstrapCMLE: no visible binding for global variable 'sd'
bootstrapCMLE: no visible global function definition for 'quantile'
bootstrapCenWbMix: no visible binding for global variable 'sd'
bootstrapCenWbMix: no visible global function definition for 'quantile'
cenWeibullMLE: no visible global function definition for 'sd'
expmx.p2.censor: no visible global function definition for 'dweibull'
expmx.p2.censor: no visible global function definition for 'pweibull'
genWbMixIni: no visible global function definition for 'runif'
log.llh.p2.censor: no visible global function definition for 'dweibull'
log.llh.p2.censor: no visible global function definition for 'pweibull'
quanWbMix : t.fun: no visible global function definition for 'pweibull'
quanWbMix: no visible global function definition for 'uniroot'
quanWbMix.int : t.fun: no visible global function definition for
  'pweibull'
quanWbMix.int: no visible global function definition for 'uniroot'
simWbMix: no visible global function definition for 'rbinom'
simWbMix: no visible global function definition for 'rweibull'
Undefined global functions or variables:
  dweibull pweibull quantile qweibull rbinom runif rweibull sd uniroot
Consider adding
  importFrom("stats", "dweibull", "pweibull", "quantile", "qweibull",
             "rbinom", "runif", "rweibull", "sd", "uniroot")
to your NAMESPACE file.
Packages required but not available:
  'cli', 'doRNG', 'doSNOW', 'dplyr', 'foreach', 'generics', 'ggplot2',
  'glue', 'lubridate', 'purrr', 'Rcpp', 'rlang', 'tibble', 'tidyr',
  'vctrs', 'progress', 'RcppArmadillo'

Packages suggested but not available for checking:
  'magrittr', 'clisymbols', 'covr', 'exuberdata', 'forcats',
  'gridExtra', 'knitr', 'rmarkdown', 'spelling', 'stringr', 'testthat',
  'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringi', 'stringr', 'tibble', 'readr', 'intervals'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dplyr', 'ggplot2', 'tidyr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'dplyr', 'english', 'lubridate', 'magrittr', 'pillar',
  'purrr', 'rlang', 'stringr', 'tibble', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'eyedata', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tibble', 'data.table', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'dplyr', 'broom', 'broom.mixed', 'ggplot2', 'lazyeval', 'rlang',
  'zoo', 'tidyr', 'purrr'

Packages suggested but not available for checking:
  'pbapply', 'knitr', 'lme4', 'glmmTMB', 'testthat', 'rmarkdown',
  'doMC', 'foreach'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'stringr', 'plyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forestmodel', 'ggplot2', 'magrittr', 'purrr', 'rlang',
  'scales', 'tibble'

Packages suggested but not available for checking:
  'covr', 'furrr', 'future', 'knitr', 'rmarkdown', 'roxygen2',
  'testthat', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doSNOW', 'foreach', 'ggplot2', 'lavaan', 'moments', 'progress'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'drc', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'readxl', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'rlang', 'tidyr', 'GGally', 'scales', 'magrittr',
  'purrr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
Packages required but not available: 'knitr', 'markdown', 'R.utils'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'assertable', 'ggplot2', 'purrr', 'dplyr', 'nls2',
  'rlang', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'haven', 'jsonlite', 'readxl', 'magrittr', 'textreadr', 'tibble',
  'stringr', 'writexl', 'purrr', 'mboxr', 'vroom', 'rmarkdown', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'striprtf', 'xml2', 'dplyr', 'rvest',
  'antiword', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forcats', 'ggplot2', 'lubridate', 'rlang'

Packages suggested but not available for checking:
  'covr', 'DT', 'e1071', 'knitr', 'miniUI', 'rmarkdown', 'ROCR',
  'shiny', 'testthat', 'tibble', 'tidyr', 'tsibble', 'tsibbledata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'ggplot2', 'lme4', 'plyr', 'reshape2', 'scales', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'DT', 'ggplot2', 'ggridges', 'moments', 'shiny',
  'shinydashboard', 'weights'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'ggplot2', 'digest', 'plyr', 'reshape', 'Jmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ada', 'e1071', 'GA', 'gbm', 'optimx', 'glmnet', 'ROCR', 'BiocStyle'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mlbench', 'doParallel', 'dplyr', 'yardstick',
  'rsample'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'NMF', 'rgl', 'reshape2', 'foreach', 'doParallel', 'doRNG',
  'pkgmaker'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fabletools', 'ATAforecasting', 'rlang', 'tibble', 'dplyr',
  'tsibble', 'distributional', 'tsbox', 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'fabletools', 'rlang', 'tsibble', 'lubridate', 'prophet',
  'dplyr', 'distributional'

Packages suggested but not available for checking:
  'tsibbledata', 'testthat', 'ggplot2', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fabletools', 'Rcpp', 'rlang', 'dplyr', 'tsibble', 'tibble', 'tidyr',
  'distributional'

Packages suggested but not available for checking:
  'covr', 'feasts', 'forecast', 'knitr', 'rmarkdown', 'spelling',
  'testthat', 'tsibbledata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tsibble', 'tibble', 'ggplot2', 'tidyselect', 'rlang', 'dplyr',
  'tidyr', 'generics', 'R6', 'vctrs', 'distributional', 'progressr',
  'lifecycle'

Packages suggested but not available for checking:
  'covr', 'crayon', 'fable', 'future.apply', 'knitr', 'pillar',
  'feasts', 'rmarkdown', 'spelling', 'testthat', 'tsibbledata',
  'lubridate'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'doParallel', 'foreach', 'label.switching', 'mvtnorm',
  'RColorBrewer', 'corrplot', 'mclust', 'coda', 'ggplot2',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rlang'

Packages suggested but not available for checking:
  'testthat', 'data.table', 'mvnfast', 'extraDistr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'glue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'matrixcalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'httr', 'jsonlite', 'knitr', 'stringr',
  'snakecase', 'rlang'

Packages suggested but not available for checking:
  'magick', 'ggplot2', 'purrr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'generics', 'Formula'

Packages suggested but not available for checking:
  'tibble', 'dplyr', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rARPACK'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ade4', 'ggplot2', 'ggrepel', 'xtable', 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'abind', 'dendextend', 'FactoMineR', 'ggpubr', 'reshape2',
  'ggrepel', 'tidyr'

Packages suggested but not available for checking:
  'ade4', 'ca', 'igraph', 'knitr', 'mclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FactoMineR', 'rrcov', 'rmarkdown', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'DT', 'ellipse', 'flashClust', 'leaps', 'scatterplot3d',
  'ggplot2', 'ggrepel'

Packages suggested but not available for checking:
  'missMDA', 'knitr', 'Factoshiny', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'partitions'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'psych'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'statmod', 'abind', 'polycor', 'VineCopula', 'matlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arm', 'genlasso', 'prodlim', 'sandwich', 'igraph', 'pbmcapply',
  'pbapply', 'mvtnorm', 'stringr', 'doParallel', 'foreach', 'estimatr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'reshape2', 'colorRamps', 'proxy', 'ggpubr',
  'scales', 'mvtnorm', 'knitr', 'magrittr', 'agricolae', 'forcats',
  'formula.tools'

Packages suggested but not available for checking:
  'survminer', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'pracma', 'gtools'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'multcomp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'plotrix', 'relaimpo', 'nortest', 'lmtest', 'car', 'kernlab', 'usdm',
  'hier.part'
Packages unavailable to check Rd xrefs: 'kernlab', 'relaimpo', 'hier.part', 'nortest', 'lmtest', 'usdm', 'car', 'SciViews', 'plotrix'
Note: found 5 marked Latin-1 strings
Packages required but not available:
  'GIGrvg', 'Rcpp', 'corrplot', 'stochvol', 'RcppArmadillo'

Packages suggested but not available for checking:
  'LSD', 'coda', 'knitr', 'RColorBrewer', 'testthat', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/paper.Rtex'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'HDInterval', 'lpSolve', 'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'purrr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'covr', 'roxygen2', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FactoMineR', 'shiny', 'FactoInvestigate', 'ggplot2', 'DT',
  'colourpicker', 'ggrepel', 'shinydashboard', 'shinyjqui', 'missMDA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'R6', 'caTools', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'R6', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'factset.protobuf.stach.v2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RProtoBuf', 'R6'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'elasticnet', 'sparseLDA', 'sda', 'glmnet', 'mnormt', 'crossval',
  'corpcor', 'matrixStats'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MFPCA', 'fda', 'fda.usc', 'funData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RSpectra', 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/fad-vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BBmisc', 'checkmate'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ranger', 'assertthat', 'quantreg', 'qrnn', 'igraph', 'ggplot2',
  'cowplot', 'scales'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'markdown', 'data.table',
  'rticles', 'mvtnorm', 'magick', 'ggraph', 'pdftools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'glue', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'irr', 'rlist', 'tidyr', 'magrittr', 'data.table',
  'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'optiSolve', 'CVXR', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DALEX', 'ggplot2', 'scales', 'patchwork'

Packages suggested but not available for checking:
  'ranger', 'gbm', 'knitr', 'rmarkdown', 'covr', 'testthat',
  'spelling', 'ggdendro', 'ggrepel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'devtools', 'e1071', 'ggplot2', 'pROC'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'matrixStats'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
faisalconjoint: no visible global function definition for 'barplot'
faisalconjoint: no visible global function definition for 'text'
faisalconjoint: no visible global function definition for 'jpeg'
faisalconjoint: no visible global function definition for 'dev.off'
Undefined global functions or variables:
  barplot dev.off jpeg text
Consider adding
  importFrom("grDevices", "dev.off", "jpeg")
  importFrom("graphics", "barplot", "text")
to your NAMESPACE file.
Packages required but not available: 'fritools', 'igraph', 'MakefileR'

Packages suggested but not available for checking:
  'cleanr', 'covr', 'cyclocomp', 'devtools', 'hunspell', 'knitr',
  'lintr', 'packager', 'pkgbuild', 'pkgload', 'rasciidoc', 'rmarkdown',
  'roxygen2', 'rprojroot', 'RUnit', 'spelling', 'testthat', 'withr',
  'usethis'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rasciidoc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'polycor', 'pscl', 'VGAM'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Familias', 'paramlink'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'LipidMS', 'rmarkdown', 'knitr', 'accucor', 'scales', 'gtools',
  'minpack.lm', 'tidyr', 'plyr', 'gplots'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'kinship2', 'truncnorm', 'eha', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'DepthProc', 'matrixStats'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'rlang', 'rstream', 'stringi'

Packages suggested but not available for checking:
  'BART', 'callr', 'CORElearn', 'cowplot', 'dynamicTreeCut', 'e1071',
  'Ecdat', 'fastcluster', 'ggplot2', 'glmnet', 'gtable',
  'harmonicmeanp', 'isotree', 'knitr', 'labeling', 'laGP', 'maxstat',
  'mboost', 'microbenchmark', 'partykit', 'proxy', 'qvalue',
  'randomForestSRC', 'ranger', 'rmarkdown', 'scales', 'testthat',
  'xml2', 'VGAM', 'xgboost'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kinship2', 'paramlink', 'Rsolnp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'plyr', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pheatmap', 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Package suggested but not available for checking: 'FAdist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'future', 'R.utils'

Packages suggested but not available for checking:
  'future.batchtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CompQuadForm', 'kinship2', 'coxme', 'bdsmatrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mnormt', 'impute'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'ellipse'
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sensitivity', 'igraph', 'DiceKriging'

Packages suggested but not available for checking: 'manipulate', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'shiny'
Skipping vignette re-building
Packages suggested but not available for checking:
  'unitizer', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'RJSONIO', 'plyr', 'data.table', 'classInt', 'ggplot2', 'labeling',
  'XML'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/FAOSTAT.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sem', 'mvtnorm', 'lavaan', 'mirt', 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmlwidgets', 'jsonlite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nnls', 'preprocessCore'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BBmisc', 'checkmate', 'readr', 'stringi'

Packages suggested but not available for checking: 'OpenML', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ncvreg', 'fBasics', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'miniUI', 'data.table', 'magrittr', 'shinyWidgets',
  'Benchmarking', 'shinycssloaders', 'readr', 'rlang', 'tibble',
  'dplyr', 'DT'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'tidyverse', 'knitr', 'rmarkdown', 'bookdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'fOptions'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'naivebayes', 'fastAdaboost', 'gam'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'fMultivar', 'robustbase', 'sn',
  'ecodist', 'mvnormtest', 'energy'

Packages suggested but not available for checking: 'mnormt', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'e1071', 'fitdistrplus', 'ggplot2', 'openxlsx', 'PearsonDS',
  'plyr', 'purrr', 'RcppRoll', 'scales', 'tidyhydat', 'tidyr', 'zyp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'LRMF3', 'ellipsis', 'glue', 'logger', 'Rcpp', 'RSpectra',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'invertiforms', 'covr', 'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'generics', 'png', 'ggplot2', 'ggpubr', 'glue'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'curl', 'magrittr', 'data.table',
  'vctrs', 'R.utils', 'viridis', 'zeallot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package which this enhances but not available for checking: 'flashClust'
Package unavailable to check Rd xrefs: 'flashClust'
Packages required but not available: 'bindata', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dynpred', 'foreach'

Packages suggested but not available for checking:
  'testthat', 'cmprsk', 'crrp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'irlba', 'plyr', 'RSpectra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'CUB'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RUnit'
Packages required but not available: 'data.table', 'tibble', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'raster', 'sp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'microbenchmark', 'knitr', 'rmarkdown', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RobustGaSP', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'glm2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'mvtnorm', 'rbenchmark', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'jmuOutlier'
Package unavailable to check Rd xrefs: 'jmuOutlier'
Packages required but not available: 'matrixStats', 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fastICA', 'energy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'clusterCrit'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages suggested but not available for checking:
  'testthat', 'caret', 'e1071'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'statmod', 'Rcpp', 'dplyr', 'mvtnorm', 'RcppEigen'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/fastJT.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rARPACK'

Packages suggested but not available for checking: 'coxKM', 'SKAT'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pdist', 'assertthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RSpectra', 'bbmle', 'fields'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'spelling', 'ngspatial'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'gtools', 'data.table', 'stringdist',
  'stringr', 'stringi', 'Rcpp', 'FactoClass', 'adagio', 'dplyr',
  'plotrix', 'RcppArmadillo', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package which this enhances but not available for checking: 'speedglm'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sp', 'raster', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
File 'fastmatch/libs/x64/fastmatch.dll':
  Found non-API call to R: 'match5'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'doParallel', 'foreach', 'igraph', 'tidygraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixStats', 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'plyr', 'future', 'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'geepack'
'LazyData' is specified without a 'data' directory
Running examples in 'fastpseudo-Ex.R' failed
The error most likely occurred in:

> ### Name: fast_pseudo_mean
> ### Title: Calculate pseudo-observations.
> ### Aliases: fast_pseudo_mean
> 
> ### ** Examples
> 
> # Dummy data
> 
> id <- c(1, 2, 3, 4)
> female <- c(0, 1, 1, 0)
> time <- c(23, 45, 38, 66)
> event <- c(1, 0, 0, 0)
> 
> # Compute pseudo-observations
> 
> pseudo = fast_pseudo_mean(time, event, 50)
> 
> # Create a data frame
> 
> test <- data.frame(id, female, pseudo)
> 
> # Fit a regression model
> 
> library(geepack)
Error in library(geepack) : there is no package called 'geepack'
Execution halted
Packages required but not available:
  'dplyr', 'gridExtra', 'ggplot2', 'magrittr', 'readr', 'rmarkdown',
  'rvest', 'tibble', 'tidyr', 'scales', 'xml2'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mosaic', 'maxLik', 'numDeriv', 'dplyr', 'ggplot2', 'miscTools'

Packages suggested but not available for checking:
  'ggformula', 'mosaicCalc', 'tidyr', 'readr', 'faraway', 'Hmisc',
  'DAAG', 'multcomp', 'vcd', 'car', 'alr4', 'corrgram',
  'BradleyTerry2', 'cubature', 'knitr', 'mosaicData', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixStats', 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ellipsis', 'glue', 'igraph', 'magrittr', 'RSpectra', 'tibble',
  'tidygraph'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'data.table', 'dplyr', 'glue', 'httr', 'janitor', 'jsonlite',
  'lubridate', 'magrittr', 'progressr', 'purrr', 'Rcpp',
  'RcppParallel', 'rlang', 'rvest', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'crayon', 'curl', 'DBI', 'furrr', 'future', 'ggplot2', 'ggrepel',
  'qs', 'rmarkdown', 'RSQLite', 'stringi', 'testthat', 'usethis',
  'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xgboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'base64enc', 'Cairo'

Package suggested but not available for checking: 'Rserve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'limSolve', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'ggplot2', 'gridExtra', 'matrixStats', 'plyr', 'Rcpp',
  'tibble', 'RcppArmadillo'

Packages suggested but not available for checking:
  'AmesHousing', 'covr', 'earth', 'htmltools', 'knitr', 'lightgbm',
  'ranger', 'reticulate', 'rmarkdown', 'rstudioapi', 'tinytest',
  'titanic', 'xgboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'glue', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'slam'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'collapse', 'matrixStats', 'kit', 'magrittr', 'fst'

Packages suggested but not available for checking:
  'xts', 'roll', 'fasttime', 'lubridate', 'dygraphs', 'stringi',
  'stringfish', 'Rfast', 'Rfast2', 'coop', 'rrapply', 'qs', 'tidyfast',
  'maditr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kinship2', 'multgee'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lle', 'locfit', 'matrixStats', 'pheatmap', 'princurve',
  'randomForest', 'RColorBrewer', 'Rtsne', 'som', 'umap'

Packages suggested but not available for checking:
  'DESeq2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'minpack.lm', 'timeSeries'

Packages suggested but not available for checking: 'zoo', 'xts'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'lifecycle', 'rlang'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'intrval', 'knitr', 'magrittr', 'rmarkdown',
  'roxygen2', 'testthat', 'tibble', 'tidyr', 'vctrs', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'httpcode', 'whisker'

Packages suggested but not available for checking:
  'crul', 'curl', 'httr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'dplyr', 'ggplot2', 'jsonlite', 'truncnorm', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'tidyr', 'knitr', 'rmarkdown', 'roxygen2', 'covr',
  'cowplot', 'ggExtra', 'purrr', 'broom', 'broom.mixed', 'psych',
  'lmerTest', 'kableExtra', 'glue', 'openssl', 'readr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matlab', 'ggplot2', 'bvartools', 'foreach', 'magrittr', 'MCMCpack',
  'coda', 'dplyr', 'doParallel'

Packages suggested but not available for checking:
  'testthat', 'vars', 'patchwork'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xml2'

Packages suggested but not available for checking:
  'httr', 'tinytest', 'ttdo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glpkAPI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'magrittr', 'purrr', 'rlang', 'ROI',
  'ROI.plugin.ecos', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'jsonlite', 'curl', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'timeDate', 'timeSeries', 'gss', 'stabledist'

Packages suggested but not available for checking: 'akima', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pbatR', 'fgui', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
FBN.histogramMaxima: no visible global function definition for 'hist'
FBN.kmeans: no visible global function definition for 'median'
FBN.kmeans: no visible global function definition for 'kmeans'
FBNormalization: no visible global function definition for 'read.table'
FBNormalization: no visible global function definition for 'median'
FBNormalization: no visible global function definition for 'hist'
FBNormalization: no visible global function definition for 'par'
FBNormalization: no visible global function definition for 'dev.print'
FBNormalization: no visible binding for global variable 'bmp'
FBNormalization: no visible global function definition for 'sd'
FBNormalization: no visible global function definition for
  'write.table'
medianFilter: no visible global function definition for 'median'
Undefined global functions or variables:
  bmp dev.print hist kmeans median par read.table sd write.table
Consider adding
  importFrom("grDevices", "bmp", "dev.print")
  importFrom("graphics", "hist", "par")
  importFrom("stats", "kmeans", "median", "sd")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
Packages required but not available: 'timeDate', 'timeSeries', 'fBasics'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RCurl', 'jsonlite', 'digest', 'futile.logger', 'bit64', 'plyr',
  'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'stringr'

Packages suggested but not available for checking:
  'RJSONIO', 'RCurl', 'httr', 'XML', 'Rlab', 'xtable', 'speedglm',
  'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bayestestR'

Packages suggested but not available for checking:
  'BayesFactor', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'forcats', 'fractional', 'R6', 'Rcpp', 'registry', 'settings',
  'stringr', 'tibble', 'tikzDevice', 'magrittr', 'purrr'

Packages suggested but not available for checking:
  'arules', 'covr', 'hasseDiagram', 'knitr', 'markdown', 'rmarkdown',
  'testthat', 'tictoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'assertthat', 'rlang'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'combinat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fBasics', 'fOptions', 'fExoticOptions'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'locfdr', 'ggplot2', 'cowplot', 'fields', 'dplyr', 'spatstat.geom',
  'polyCub', 'hexbin', 'bigsplines', 'data.table', 'Hmisc'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'digest', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kerdiest', 'pspline', 'sfsmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Biostrings', 'seqRFLP', 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'numDeriv', 'BH',
  'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reshape2', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'fMultivar'

Packages suggested but not available for checking: 'RUnit', 'mvtnorm', 'sn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'semTools', 'checkmate', 'data.table'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'ggplot2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mclust', 'ggplot2', 'DataVisualizations'

Packages suggested but not available for checking:
  'kernlab', 'cclust', 'dbscan', 'kohonen', 'MCL', 'ADPclust',
  'DatabionicSwarm', 'orclus', 'subspace', 'flexclust', 'ABCanalysis',
  'apcluster', 'pracma', 'EMCluster', 'pdfCluster', 'parallelDist',
  'plotly', 'ProjectionBasedClustering', 'GeneralizedUmatrix',
  'mstknnclust', 'densityClust', 'energy', 'R.utils', 'tclust',
  'Spectrum', 'genie', 'protoclust', 'fastcluster', 'clusterability',
  'signal', 'reshape2', 'PPCI', 'clustrd', 'smacof', 'rgl', 'prclust',
  'dendextend', 'moments', 'prabclus', 'VarSelLCM', 'sparcl',
  'mixtools', 'HDclassif', 'clustvarsel', 'clusterSim', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'magrittr', 'purrr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'face', 'fields'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tiff', 'stringr', 'bitops', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringdist', 'purrr', 'magrittr', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'fracdist'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CompQuadForm', 'pracma', 'fda', 'vars'

Packages suggested but not available for checking: 'testthat', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'fdapace'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'mvtnorm', 'fda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fda', 'doParallel', 'ggplot2', 'doBy', 'magic', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Note: found 75 marked UTF-8 strings
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'Hmisc', 'pracma', 'numDeriv', 'RcppEigen'

Packages suggested but not available for checking:
  'plot3D', 'rgl', 'aplpack', 'ks', 'gtools', 'knitr', 'rmarkdown',
  'EMCluster', 'minqa', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'dplyr', 'DT', 'fdapace', 'ggplot2', 'golem', 'htmltools',
  'magrittr', 'shiny', 'plotly', 'purrr', 'reshape2', 'stringr',
  'tidyr', 'bs4Dash', 'shinyWidgets', 'shinyjs'

Packages suggested but not available for checking:
  'knitr', 'covr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geometry', 'rgl', 'plot3D', 'plot3Drgl', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'tibble', 'magrittr', 'reshape2', 'patchwork', 'fdapace',
  'FastGP'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fds', 'deSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'coda', 'foreach', 'mvtnorm', 'matrixcalc', 'fields',
  'doParallel', 'viridisLite', 'tolerance', 'lpSolve', 'testthat',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'akima', 'plot3D', 'plot3Drgl', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fda', 'doParallel', 'iterators', 'foreach'

Package suggested but not available for checking: 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matlab', 'corrplot'

Packages suggested but not available for checking: 'fds', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'rtdists', 'RWiener', 'ggplot2', 'reshape2', 'testthat', 'knitr',
  'rmarkdown', 'microbenchmark', 'ggnewscale', 'ggforce', 'WienR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'usethis'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arules', 'mclust', 'pls', 'car', 'caret', 'e1071', 'FactoMineR',
  'flexclust', 'fpc', 'glmnet', 'ibr', 'irr', 'kohonen', 'leaps',
  'mda', 'meanShiftR', 'questionr', 'randomForest', 'ROCR', 'Rtsne',
  'SnowballC', 'text2vec', 'stopwords', 'wordcloud', 'xgboost'

Package suggested but not available for checking: 'fds'

Package which this enhances but not available for checking: 'NMF'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'forecast', 'foreach', 'gplots', 'iterators',
  'itertools', 'psych', 'png', 'Rcpp', 'tseries', 'xts', 'zoo',
  'RcppArmadillo'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Fgmutils', 'data.table', 'sqldf', 'randomcoloR', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ade4', 'ape', 'geometry', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'qvalue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fda', 'Rcpp', 'mosaic', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'stepR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rainbow', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiscreteFDR', 'Rcpp', 'PoissonBinomial', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lars', 'rms'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'randomForest', 'rpart.plot', 'GA', 'e1071', 'ggplot2',
  'magrittr', 'tibble', 'dplyr', 'reticulate'

Package suggested but not available for checking: 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geometry', 'geosphere', 'ptinpoly', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fabletools', 'rlang', 'tibble', 'tsibble', 'ggplot2', 'dplyr',
  'tidyr', 'scales', 'vctrs', 'lubridate', 'slider', 'lifecycle'

Packages suggested but not available for checking:
  'tsibbledata', 'pillar', 'knitr', 'rmarkdown', 'testthat', 'covr',
  'seasonal', 'urca', 'fracdiff', 'fable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'tibble', 'hms'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rpart.plot', 'plyr'

Packages suggested but not available for checking:
  'png', 'knitr', 'Metrics', 'mlr', 'gbm', 'randomForest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'spelling', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'digest', 'magrittr', 'BH'

Packages suggested but not available for checking:
  'RUnit', 'glmnet', 'knitr', 'xgboost', 'rmarkdown', 'pROC'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'ggplot2'

Packages suggested but not available for checking:
  'flexclust', 'clustMixType', 'knitr', 'rmarkdown', 'testthat',
  'attempt', 'ClustImpute', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ks', 'plot3D'

Packages suggested but not available for checking:
  'knitr', 'misc3d', 'rgl', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lokern'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'caret', 'tibble', 'dplyr', 'e1071', 'randomForest'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'caret', 'dplyr', 'purrr', 'stringr', 'tibble',
  'magrittr', 'cli', 'testthat', 'rstudioapi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'curl', 'rmarkdown', 'jsonlite', 'sf', 'stringr', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'readr', 'vroom'

Packages suggested but not available for checking:
  'testthat', 'scales', 'knitr', 'rmarkdown', 'fs', 'lubridate',
  'ggplot2', 'stringr', 'usethis', 'utf8'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'data.table', 'devtools', 'igraph', 'curl', 'rgdal', 'raster',
  'Hmisc', 'rgeos', 'readr', 'lubridate', 'tibble', 'dplyr',
  'magrittr', 'foreach', 'ncdf4', 'stringr', 'sf', 'httr', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'covr', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'curl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringdist', 'SnowballC', 'stringr', 'purrr', 'Rcpp', 'forcats',
  'data.table', 'magrittr', 'scales', 'BH'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'xml2', 'purrr', 'rvest', 'stringi', 'httr',
  'tidyr', 'tidytext'

Packages suggested but not available for checking: 'ggplot2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'rvest', 'jsonlite', 'stringr', 'dplyr', 'xml2', 'readsdmx',
  'magrittr', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maps', 'mapdata', 'proj4', 'sp', 'gstat', 'automap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aod', 'Formula', 'plm', 'Rdpack', 'dplyr'

Packages suggested but not available for checking:
  'texreg', 'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'prettycode', 'curl'

Packages suggested but not available for checking:
  'knitr', 'printr', 'testthat', 'covr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'ggplot2', 'sae', 'fields', 'snowfall', 'snow'

Package suggested but not available for checking: 'pscl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'numDeriv', 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'poibin'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rstan', 'ggplot2', 'ergm', 'network', 'extrafont', 'matrixStats',
  'reshape2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'ggplot2'
Package required but not available: 'statmod'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'dplyr', 'magrittr', 'scales', 'gganimate', 'ggplot2',
  'tibble', 'purrr', 'geozoo', 'tourr', 'stringr', 'ggrepel',
  'ggforce', 'tidyr'

Packages suggested but not available for checking:
  'roxygen2', 'covr', 'pkgdown', 'testthat', 'forcats', 'patchwork'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nls.multstart', 'simpleboot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'fOptions'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tmvtnorm', 'fCertificates', 'mvtnorm', 'fExoticOptions', 'fOptions'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'fGarch'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ff', 'fastmatch', 'bit'

Packages suggested but not available for checking:
  'testthat', 'LaF', 'biglm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rvest', 'xts', 'xml2', 'zoo', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R2HTML'

Package suggested but not available for checking: 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'ggplot2', 'gridExtra'
'library' or 'require' calls in package code:
  'ggplot2' 'gridExtra'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
FFieldPtRepDemo: no visible global function definition for 'ggplot'
FFieldPtRepDemo: no visible binding for global variable 'mtcars'
FFieldPtRepDemo: no visible global function definition for 'aes'
FFieldPtRepDemo: no visible binding for global variable 'mpg'
FFieldPtRepDemo: no visible global function definition for 'geom_point'
FFieldPtRepDemo: no visible global function definition for 'geom_text'
FFieldPtRepDemo: no visible global function definition for 'ggtitle'
FFieldPtRepDemo: no visible global function definition for
  'geom_segment'
FFieldPtRepDemo: no visible global function definition for
  'grid.arrange'
Undefined global functions or variables:
  aes geom_point geom_segment geom_text ggplot ggtitle grid.arrange mpg
  mtcars
Consider adding
  importFrom("datasets", "mtcars")
to your NAMESPACE file.
Running examples in 'FField-Ex.R' failed
The error most likely occurred in:

> ### Name: FField-package
> ### Title: Force field simulation for a set of points
> ### Aliases: FField FField-package
> ### Keywords: package
> 
> ### ** Examples
> 
> # Repel points
> coords <-
+   FFieldPtRep(coords = cbind(mtcars$wt * 100 / max(mtcars$wt), 
+                              mtcars$mpg * 100 / max(mtcars$mpg)),
+               rep.fact = 40)
> head(mtcars)
                   mpg cyl disp  hp drat    wt  qsec vs am gear carb
Mazda RX4         21.0   6  160 110 3.90 2.620 16.46  0  1    4    4
Mazda RX4 Wag     21.0   6  160 110 3.90 2.875 17.02  0  1    4    4
Datsun 710        22.8   4  108  93 3.85 2.320 18.61  1  1    4    1
Hornet 4 Drive    21.4   6  258 110 3.08 3.215 19.44  1  0    3    1
Hornet Sportabout 18.7   8  360 175 3.15 3.440 17.02  0  0    3    2
Valiant           18.1   6  225 105 2.76 3.460 20.22  1  0    3    1
> head(coords)
         x        y
1 45.11259 58.47014
2 54.19136 61.20140
3 40.34714 69.42976
4 62.48920 65.94822
5 59.81417 56.33633
6 66.54832 53.33343
>   
> # Demo
> FFieldPtRepDemo()
Error in library(ggplot2) : there is no package called 'ggplot2'
Calls: FFieldPtRepDemo -> library
Execution halted
Packages required but not available: 'httr', 'jsonlite', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'car', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'jsonlite', 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'forcats', 'ggdist', 'ggplot2', 'lubridate',
  'magrittr', 'mvtnorm', 'purrr', 'rlang', 'scales', 'stringr',
  'tibble', 'tidyr', 'vctrs', 'nloptr', 'crayon', 'NlcOptim'

Packages suggested but not available for checking:
  'covr', 'knitr', 'markdown', 'roxygen2', 'spelling', 'testthat',
  'xts'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bit'

Packages suggested but not available for checking: 'biglm', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cachem', 'checkmate', 'dplyr', 'glue', 'httr', 'jsonlite',
  'lifecycle', 'magrittr', 'nflreadr', 'memoise', 'purrr', 'rappdirs',
  'ratelimitr', 'rlang', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'curl', 'httptest', 'knitr', 'rmarkdown', 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'cli', 'data.table', 'ffscrapr', 'glue', 'magrittr',
  'nflreadr', 'Rglpk', 'rlang', 'tidytable'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'ggridges', 'knitr', 'progressr', 'rmarkdown',
  'scales', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'fftw'
ftest: no visible global function definition for 'wilcox.test'
ftest: no visible global function definition for 't.test'
Undefined global functions or variables:
  t.test wilcox.test
Consider adding
  importFrom("stats", "t.test", "wilcox.test")
to your NAMESPACE file.
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'fastICA'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'jpmesh', 'magrittr', 'purrr', 'raster', 'readr',
  'rlang', 'sf', 'stars', 'stringr', 'terra', 'tibble', 'units', 'xml2'

Packages suggested but not available for checking:
  'covr', 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fgeo.tool', 'glue', 'lubridate', 'magrittr', 'purrr',
  'rlang', 'tibble', 'tidyr', 'withr'

Packages suggested but not available for checking:
  'covr', 'fgeo.plot', 'fgeo.x', 'ggplot2', 'knitr', 'measurements',
  'readr', 'rmarkdown', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fgeo.tool', 'ggplot2', 'ggrepel', 'glue', 'magrittr',
  'purrr', 'rlang', 'stringr'

Packages suggested but not available for checking:
  'covr', 'fgeo.analyze', 'fgeo.x', 'gridExtra', 'knitr', 'rmarkdown',
  'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'dplyr', 'fgeo.analyze', 'fgeo.plot', 'fgeo.tool',
  'fgeo.x', 'glue', 'magrittr', 'purrr', 'rlang', 'rstudioapi'

Packages suggested but not available for checking:
  'covr', 'DT', 'kableExtra', 'knitr', 'rmarkdown', 'spelling',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'glue', 'magrittr', 'purrr', 'readr', 'rlang', 'tibble',
  'tidyselect'

Packages suggested but not available for checking:
  'covr', 'fgeo.x', 'knitr', 'roxygen2', 'spelling', 'stringr',
  'testthat', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'memoise'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'devtools', 'git2r'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'network', 'sna', 'matrixcalc', 'sandwich', 'lmtest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'JGL', 'fdapace'

Packages suggested but not available for checking:
  'mvtnorm', 'fda', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sqldf', 'stringr', 'plyr', 'data.table', 'devEMF', 'png', 'ggplot2',
  'gridExtra'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/intro-fgpt.Rnw'
(Is a VignetteBuilder field missing?)
fgeasy: no visible global function definition for 'dist'
fgeasy : cor.est: no visible global function definition for 'cor.test'
fgeasy: no visible binding for global variable 'var'
fgperm : runrand: no visible global function definition for 'runif'
fgperm : runrand: no visible global function definition for 'ave'
fgploc : runrand: no visible global function definition for 'runif'
fgploc : runrand: no visible global function definition for 'ave'
fyshuffle: no visible global function definition for 'runif'
plot.fg: no visible global function definition for 'par'
plot.fg: no visible global function definition for 'segments'
plot.fg: no visible binding for global variable 'quantile'
plot.fg: no visible global function definition for 'abline'
plot.fg: no visible global function definition for 'axis'
summary.fg: no visible binding for global variable 'quantile'
Undefined global functions or variables:
  abline ave axis cor.test dist par quantile runif segments var
Consider adding
  importFrom("graphics", "abline", "axis", "par", "segments")
  importFrom("stats", "ave", "cor.test", "dist", "quantile", "runif",
             "var")
to your NAMESPACE file.
Files named as vignettes but with no recognized vignette engine:
   'vignettes/intro-fgpt.Rnw'
(Is a VignetteBuilder field missing?)
Found the following significant warnings:
  fgsg.h:96:61: warning: passing argument 8 of 'dpotrs_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:202:41: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:347:41: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:460:41: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:516:61: warning: passing argument 8 of 'dpotrs_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:636:41: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:717:41: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:852:41: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
  fgsg.h:996:41: warning: passing argument 5 of 'dpotrf_' from incompatible pointer type [-Wincompatible-pointer-types]
See 'C:/r_packages/pkgcheck/CRAN/FGSG/FGSG.Rcheck/00install.out' for details.
Packages required but not available:
  'xml2', 'stringr', 'httr', 'dplyr', 'plyr', 'data.table'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'tseries'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'BSSasymp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
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   'inst/doc/multistate.Rnw'
   'inst/doc/skewnormal.Rnw'
   'inst/doc/survival.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'rstudioapi', 'sodium', 'whisker'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'phyloseq', 'RcppEigen', 'RcppNumerical', 'RcppZiggurat', 'BH'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'shinythemes', 'turner', 'dplyr', 'shinyjqui', 'numbers',
  'blocksdesign', 'shinycssloaders', 'magrittr', 'ggplot2', 'plotly',
  'viridis', 'shinyalert'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'stringdist', 'concaveman'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spam', 'viridis', 'maps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'reqres', 'glue', 'crayon'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'RColorBrewer', 'rgdal', 'RPostgreSQL', 'RSQLite', 'sae', 'sf', 'sp',
  'sqldf', 'units', 'xml2'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'magick', 'patchwork'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'Rcpp', 'BH'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'tidyr'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'filehash', 'DBI', 'RSQLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
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'LazyData' is specified without a 'data' directory
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
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Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'spelling'
'LazyData' is specified without a 'data' directory
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
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  'rclipboard'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'gridExtra', 'lme4', 'magrittr', 'mice', 'pillar', 'pROC', 'purrr',
  'scales', 'stringr', 'tidyr'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
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  'rmarkdown', 'testthat', 'tidyr', 'vcr', 'webfakes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Package suggested but not available for checking: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'crayon', 'htmlwidgets'

Packages suggested but not available for checking: 'shiny', 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arm', 'glmnet', 'lars', 'quadprog', 'glinternet', 'igraph',
  'sandwich', 'lmtest', 'limSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'reticulate', 'testthat'
Running 'run-all.R'
Running the tests in 'tests/run-all.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'pdftools', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'FinePop'
Packages suggested but not available for checking: 'diveRsity', 'ape'
Packages unavailable to check Rd xrefs: 'ape', 'diveRsity'
Packages required but not available:
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  'tibble', 'tidyr', 'tidyselect', 'vctrs', 'workflows'

Packages suggested but not available for checking:
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  'parsnip', 'ranger', 'recipes', 'rsample', 'spelling', 'testthat',
  'yardstick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RUnit'
Packages required but not available:
  'Rcpp', 'klaR', 'ggplot2', 'GGally', 'Rcmdr', 'plyr', 'reshape',
  'rgl', 'gridExtra', 'scales', 'car', 'RcppProgress', 'RcppGSL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sdprisk', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'stabledist', 'RcppArmadillo', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'earth', 'foreach', 'generics', 'glmnet', 'gtools', 'hts', 'kernlab',
  'lubridate', 'magrittr', 'modeltime.gluonts', 'modeltime.resample',
  'parsnip', 'plyr', 'purrr', 'recipes', 'rsample', 'rules', 'stringr',
  'tibble', 'tidyr', 'tidyselect', 'timetk', 'tune', 'workflows'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

Packages suggested but not available for checking:
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  'psych', 'GPArotation', 'chron', 'polynom', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'tibble', 'lubridate', 'tidyr',
  'stringr', 'readr', 'magrittr', 'purrr', 'furrr', 'forcats', 'future'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
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Found a .Internal call in the following function:
  'match'
with calls to .Internal functions
  'match'

Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'matrixStats', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'R6', 'cli', 'jose', 'shiny', 'openssl', 'jsonlite', 'base64enc',
  'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'reshape2', 'truncnorm', 'xtable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'chk', 'testthat', 'covr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
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  'DiagrammeRsvg', 'DiagrammeR'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
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Packages suggested but not available for checking: 'testthat', 'aricode'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sf'

Packages suggested but not available for checking: 'covr', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'RcppArmadillo', 'Rcpp'

Package suggested but not available for checking: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 7 marked UTF-8 strings
Packages required but not available:
  'data.table', 'lme4', 'bootstrap', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'fishtree', 'geiger', 'knitr', 'phytools', 'progress',
  'rfishbase', 'rmarkdown'

Packages suggested but not available for checking: 'markdown', 'gh'

VignetteBuilder packages required for checking but not installed:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'chron', 'mclust', 'rMR', 'respirometry'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'jsonlite', 'memoise', 'rlang'

Packages suggested but not available for checking:
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  'picante', 'rfishbase', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'stringr', 'dplyr', 'tidyr', 'scales', 'rlang', 'curl'

Packages suggested but not available for checking:
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  'pkgdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rdpack', 'Rcpp', 'BH'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'leaps', 'ltsa', 'bestglm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'janitor', 'jsonlite', 'lubridate', 'magrittr',
  'purrr', 'rlang', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'checkmate', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'stringr', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'ggthemes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'data.table', 'viridis', 'scales', 'ggthemes', 'varian', 'paletteer',
  'XML', 'hms', 'leaflet', 'sf', 'rstudioapi', 'leafgl', 'raster',
  'terra', 'magrittr', 'rayshader'

Packages suggested but not available for checking:
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  'magick', 'rgdal'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
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  'GeneralizedHyperbolic', 'rmarkdown', 'Hmisc'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'Hmisc'
Running examples in 'fitdistrplus-Ex.R' failed
The error most likely occurred in:

> ### Name: CIcdfplot
> ### Title: Empirical cumulative distribution function with pointwise
> ###   confidence intervals on probabilities or on quantiles
> ### Aliases: CIcdfplot
> ### Keywords: distribution
> 
> ### ** Examples
> 
> # We choose a low number of bootstrap replicates in order to satisfy CRAN running times
> # constraint.
> # For practical applications, we recommend to use at least niter=501 or niter=1001.
> 
> if (requireNamespace ("ggplot2", quietly = TRUE)) {ggplotEx <- TRUE}
> 
> # (1) Fit of an exponential distribution
> #
> 
> set.seed(123)
> s1 <- rexp(50, 1)
> f1 <- fitdist(s1, "exp")
> b1 <- bootdist(f1, niter= 11) #voluntarily low to decrease computation time
> 
> # plot 95 percent bilateral confidence intervals on y values (probabilities)
> CIcdfplot(b1, CI.level= 95/100, CI.output = "probability")
> if (ggplotEx) CIcdfplot(b1, CI.level= 95/100, CI.output = "probability", plotstyle = "ggplot")
Error: object 'ggplotEx' not found
Execution halted
Errors in running code in vignettes:
when running code in 'paper2JSS.Rnw'
Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  'paper2JSS.Rnw' using 'UTF-8'... failed to complete the test
Packages required but not available: 'ICSNP', 'mvtnorm'

Packages suggested but not available for checking:
  'knitr', 'ggplot2', 'prettydoc', 'reshape2', 'rmarkdown', 'R.rsp',
  'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'rmarkdown', 'knitr'
Packages required but not available: 'hypergeo', 'bbmle'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'covr', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'car'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'foreach'

Packages suggested but not available for checking: 'devEMF', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'XML', 'gglasso', 'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'DT', 'shiny', 'dplyr', 'maxLik', 'R.utils'

Packages suggested but not available for checking:
  'actuar', 'ald', 'benchden', 'BiasedUrn', 'bridgedist', 'Davies',
  'DiscreteInverseWeibull', 'DiscreteLaplace', 'DiscreteWeibull',
  'emdbook', 'emg', 'EnvStats', 'evd', 'evir', 'ExtDist', 'extremefit',
  'FAdist', 'FatTailsR', 'fBasics', 'fExtremes', 'flexsurv', 'gambin',
  'gb', 'GenBinomApps', 'GeneralizedHyperbolic', 'gld', 'GLDEX',
  'glogis', 'GSM', 'hermite', 'HyperbolicDist', 'KScorrect',
  'loglognorm', 'marg', 'mc2d', 'minimax', 'msm', 'nCDunnett',
  'NormalLaplace', 'normalp', 'ParetoPosStable', 'PearsonDS',
  'poistweedie', 'polyaAeppli', 'qmap', 'QRM', 'ReIns', 'reliaR',
  'Renext', 'revdbayes', 'RMKdiscrete', 'RMTstat', 'sadists',
  'skellam', 'SkewHyperbolic', 'skewt', 'SMR', 'sn', 'stabledist',
  'STAR', 'statmod', 'trapezoid', 'triangle', 'truncnorm',
  'VarianceGamma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'doMC', 'foreach', 'RSvgDevice', 'devEMF'
'library' or 'require' calls in package code:
  'devEMF' 'doMC' 'foreach' 'grDevices'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages required but not available:
  'mclust', 'ADGofTest', 'fitdistrplus', 'assertthat', 'purrr',
  'ggplot2', 'cowplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fitdistrplus', 'actuar', 'e1071', 'ggplot2', 'goftest', 'shiny',
  'miniUI', 'rstudioapi', 'DT'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'readr', 'rlang', 'rvest', 'stringr', 'tidyr', 'tidyselect', 'xml2',
  'tibble', 'progress', 'glue', 'cli'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'rmarkdown', 'testthat', 'roxygen2',
  'spelling', 'curl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
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  'knitr', 'rmarkdown', 'patchwork', 'fivethirtyeightdata'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'fivethirtyeightdata'
Note: found 584 marked UTF-8 strings
Running examples in 'fivethirtyeight-Ex.R' failed
The error most likely occurred in:

> ### Name: ahca_polls
> ### Title: American Health Care Act Polls
> ### Aliases: ahca_polls
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # To convert data frame to tidy data (long) format, run:
> library(dplyr)
Error in library(dplyr) : there is no package called 'dplyr'
Execution halted
Package required but not available: 'bizdays'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'schumaker', 'cubature', 'knitr', 'foreach',
  'doParallel', 'SQUAREM', 'rmarkdown', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'jsonlite', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'numDeriv', 'sandwich', 'Rcpp', 'dreamerr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'data.table', 'plm', 'pander', 'ggplot2',
  'lfe', 'tinytex', 'pdftools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'multxpert', 'multcomp', 'MHTdiscrete'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'stringi', 'checkmate', 'rlang', 'purrr', 'R6', 'glue', 'yaml',
  'lubridate', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'pkgdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'mathjaxr', 'Rdpack', 'curl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'FKF', 'NFCP'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'rARPACK', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BBmisc', 'checkmate', 'mlr'

Packages suggested but not available for checking:
  'devtools', 'e1071', 'ggplot2', 'lhs', 'mda', 'mlbench', 'numDeriv',
  'parallelMap', 'ParamHelpers', 'plotly', 'plyr', 'RANN', 'R.rsp',
  'shape', 'shiny', 'smoof', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'tidyr', 'eurostat', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'flagr-Ex.R' failed
The error most likely occurred in:

> ### Name: flag_divide
> ### Title: Assignment of the weights for the multiple flags
> ### Aliases: flag_divide
> 
> ### ** Examples
> 
> flags <- tidyr::spread(test_data[, c(1:3)], key = time, value = flags)
Error in loadNamespace(x) : there is no package called 'tidyr'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'evaluate', 'ggplot2', 'glue', 'knitr', 'magrittr', 'purrr',
  'rmarkdown', 'stringr'

Packages suggested but not available for checking:
  'learnr', 'rstudioapi', 'shiny', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'gmp'

Packages suggested but not available for checking:
  'knitr', 'mice', 'rmarkdown', 'testthat', 'xgboost'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'dplyr', 'purrr', 'tidyr', 'ggplot2', 'ggforce', 'magrittr'

Packages suggested but not available for checking:
  'deldir', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'RcppGSL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fda', 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmlwidgets', 'jsonlite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'dplyr', 'cowplot', 'ggplot2', 'MetricsWeighted', 'rpart.plot',
  'tidyr', 'tidyselect', 'withr'

Packages suggested but not available for checking:
  'knitr', 'caret', 'mlr3', 'mlr3learners', 'moderndive', 'ranger',
  'rmarkdown', 'testthat', 'xgboost'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'xtable'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'tibble', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'stringr', 'tibble', 'tidyr', 'readxl'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'pander'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'xml2', 'httr', 'crayon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'desc', 'enc', 'gert', 'purrr', 'rematch2', 'rlang', 'tibble',
  'usethis', 'whoami', 'withr'

Packages suggested but not available for checking:
  'mockery', 'covr', 'fansi', 'fs', 'knitr', 'parsedate', 'rmarkdown',
  'rstudioapi', 'testthat', 'brio', 'callr', 'pkgload'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'modeltools'

Packages suggested but not available for checking:
  'ellipse', 'clue', 'seriation', 'skmeans'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'numDeriv', 'mclust', 'statmod', 'ContaminatedMixt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'htmltools', 'knitr', 'htmlwidgets', 'rmarkdown', 'shiny'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Packages required but not available:
  'ggplot2', 'FactoMineR', 'scales', 'reshape2', 'ggdendro',
  'grImport2', 'gridExtra', 'sisal', 'dendextend', 'shiny',
  'shinydashboard', 'shinyWidgets', 'ggforce', 'colourpicker',
  'htmltools', 'bsplus', 'DT', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'scam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'MonoPoly', 'knitr', 'rmarkdown', 'mirt'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'flexmix', 'gnm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'modeltools'

Packages suggested but not available for checking:
  'actuar', 'diptest', 'Ecdat', 'ellipse', 'gclus', 'glmnet', 'lme4',
  'mlbench', 'multcomp', 'mvtnorm', 'SuppDists'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'sf'

Packages suggested but not available for checking:
  'testthat', 'stringr', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'loo', 'bayesplot', 'ggplot2',
  'Formula', 'faraway', 'BH', 'RcppEigen', 'StanHeaders'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixcalc', 'Epi', 'formula.tools', 'orthogonalsplinebasis',
  'statmod'

Packages suggested but not available for checking: 'relsurv', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'smerc', 'sp', 'spdep', 'spatialreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'flexsurv', 'gtools'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'deSolve', 'generics', 'magrittr', 'mstate', 'muhaz',
  'mvtnorm', 'numDeriv', 'quadprog', 'Rcpp', 'rlang', 'rstpm2',
  'purrr', 'tibble', 'tidyr', 'dplyr', 'tidyselect'

Packages suggested but not available for checking:
  'colorspace', 'eha', 'ggplot2', 'knitr', 'msm', 'testthat', 'TH.data'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/multistate.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'officer', 'rmarkdown', 'knitr', 'htmltools', 'xml2', 'data.table',
  'uuid', 'gdtools', 'rlang', 'base64enc'

Packages suggested but not available for checking:
  'testthat', 'xtable', 'webshot', 'magick', 'ggplot2', 'scales',
  'broom', 'bookdown', 'equatags', 'commonmark', 'pdftools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'RCurl', 'jsonlite', 'stringr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bazar', 'pryr'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'geosphere', 'ggplot2', 'ggrepel', 'magrittr', 'rlang',
  'sf', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit', 'ggsn', 'ggmap', 'ggplot2', 'CircStats', 'circular', 'fields',
  'maptools', 'RcppArmadillo', 'rgdal', 'rgeos', 'sp', 'truncnorm'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'httr', 'parzer', 'pbapply', 'rvest'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'doParallel', 'foreach', 'assertthat', 'testthat',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'devtools', 'tidyverse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'tibble', 'stringr', 'tidyr', 'stringi',
  'knitr', 'glue', 'purrr', 'rmarkdown'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'glue', 'jsonlite', 'checkmate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'assertive.base', 'assertive.files', 'assertive.numbers',
  'assertive.properties', 'assertive.strings', 'assertive.types',
  'data.table', 'magrittr', 'minpack.lm', 'plyr', 'pracma', 'stringi',
  'withr'

Packages suggested but not available for checking:
  'bookdown', 'devtools', 'microbenchmark', 'multipanelfigure',
  'pander', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'cherry', 'e1071', 'plyr', 'someMTP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'rlang', 'magrittr', 'cli', 'ggplot2', 'tibble', 'withr',
  'viridisLite', 'Rcpp', 'R6', 'pbapply', 'dials', 'usethis',
  'optimParallel', 'rgenoud'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'covr', 'tidyverse', 'plotly', 'htmlwidgets',
  'htmltools', 'testthat', 'akima'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'flip', 'car', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'blob', 'chk', 'lifecycle'

Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'evd', 'TLMoments', 'magrittr', 'copula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'dplyr', 'jsonlite', 'stringdist'

Packages suggested but not available for checking: 'testthat', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
RIind: no visible global function definition for 'aggregate'
RIind: no visible binding for global variable 'sd'
RIpop: no visible global function definition for 'aggregate'
RIpop: no visible binding for global variable 'sd'
SI: no visible global function definition for 'sd'
SI2: no visible global function definition for 'sd'
SI3: no visible global function definition for 'aggregate'
SI3: no visible global function definition for 'pairs'
SI3: no visible global function definition for 'cor'
SI4: no visible global function definition for 'aggregate'
SI4: no visible global function definition for 'sd'
fCV: no visible global function definition for 'sd'
Undefined global functions or variables:
  aggregate cor pairs sd
Consider adding
  importFrom("graphics", "pairs")
  importFrom("stats", "aggregate", "cor", "sd")
to your NAMESPACE file.
Package suggested but not available for checking: 'SemiPar'
Malformed Title field: should not end in a period.
'library' or 'require' call to 'stats' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
GCV: no visible global function definition for 'lm'
GCV: no visible global function definition for 'resid'
ffplot: no visible global function definition for 'par'
ffplot: no visible global function definition for 'points'
ffplot: no visible global function definition for 'legend'
flowfield: no visible global function definition for 'write.table'
gpr: no visible global function definition for 'quantile'
gpr: no visible global function definition for 'var'
smoothp: no visible global function definition for 'lm'
smoothp: no visible global function definition for 'predict'
smoothp: no visible global function definition for 'resid'
smoothp: no visible global function definition for 'optimize'
Undefined global functions or variables:
  legend lm optimize par points predict quantile resid var write.table
Consider adding
  importFrom("graphics", "legend", "par", "points")
  importFrom("stats", "lm", "optimize", "predict", "quantile", "resid",
             "var")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Running examples in 'flowfield-Ex.R' failed
The error most likely occurred in:

> ### Name: Flow Field Forecasting
> ### Title: Forecast of a univariate time series Flow Field Forecasting
> ### Aliases: 'Flow Field Forecasting'
> ### Keywords: package
> 
> ### ** Examples
> 
> library(SemiPar)
Error in library(SemiPar) : there is no package called 'SemiPar'
Execution halted
Packages required but not available:
  'nomnoml', 'htmlwidgets', 'rstudioapi', 'webshot', 'styler', 'here',
  'lifecycle'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'esquisse', 'tidyselect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'params', 'diagram', 'whisker', 'readr'

Packages suggested but not available for checking:
  'reshape2', 'knitr', 'testthat', 'funr', 'rmarkdown'

Packages which this enhances but not available for checking:
  'ggplot2', 'openxlsx', 'pacman', 'cowplot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zyp', 'changepoint', 'evir'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'combinat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'test_package.R'
Running the tests in 'tests/test_package.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dlnm', 'mvmeta', 'tsModel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'caTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'knitr', 'kableExtra', 'rmarkdown'

Packages suggested but not available for checking: 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'knitr', 'kableExtra', 'rmarkdown'

Packages suggested but not available for checking: 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fitdistrplus', 'STAR', 'EnvStats', 'extraDistr', 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'forecast'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'fmdates', 'lubridate', 'tibble'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'numDeriv', 'splines2', 'orthopolynom', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'mcmc', 'tinytest', 'mvtnorm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'minimalRSD'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'assertthat', 'lubridate'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'rootSolve', 'coda', 'minpack.lm', 'minqa'

Package suggested but not available for checking: 'diagram'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'flexmix', 'glmnet', 'Rcpp', 'abind', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'caret', 'solitude', 'kernlab', 'C50', 'e1071', 'FactoMineR',
  'dplyr', 'factoextra', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'foreach', 'iterators', 'doParallel'

Packages suggested but not available for checking:
  'ggplot2', 'gridExtra', 'knitr', 'RColorBrewer', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'dplyr', 'magrittr', 'tidyr', 'lubridate'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'reshape', 'Biobase', 'expm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'viridisLite', 'RNifti', 'ggplot2', 'reshape2', 'gridExtra', 'tidyr',
  'optparse', 'RcppEigen', 'imager', 'pracma'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'metafor', 'aws'

Packages suggested but not available for checking:
  'tkrplot', 'fastICA', 'adimpro', 'oro.nifti'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'pesel', 'robustbase', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'corpcor', 'cowplot', 'ciftiTools', 'knitr', 'rmarkdown', 'RNifti',
  'ggplot2', 'ggpubr', 'ica', 'neurobase', 'oro.nifti', 'gridExtra',
  'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'Epi', 'vcd'
Packages unavailable to check Rd xrefs: 'vcd', 'Epi'
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
BSOptionValue: no visible global function definition for 'pnorm'
ImpliedVol: no visible global function definition for 'uniroot'
callFMstable: no visible global function definition for 'integrate'
fitGivenQuantile: no visible global function definition for 'uniroot'
matchQuartiles: no visible global function definition for 'optim'
putFMstable: no visible global function definition for 'integrate'
standardStableQuantile: no visible global function definition for
  'qnorm'
tailsGstable: no visible global function definition for 'integrate'
Undefined global functions or variables:
  integrate optim pnorm qnorm uniroot
Consider adding
  importFrom("stats", "integrate", "optim", "pnorm", "qnorm", "uniroot")
to your NAMESPACE file.
Packages required but not available: 'tibble', 'crayon', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'cubature', 'mvtnorm', 'sn'

Packages suggested but not available for checking: 'RUnit', 'akima'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'chemometrics', 'mvtnorm'
Packages required but not available: 'timeDate', 'timeSeries', 'fBasics'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'RANN', 'proxy', 'gmp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clisymbols', 'crayon', 'curl', 'httr', 'jsonlite', 'rlang', 'rvest',
  'tibble', 'xml2'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'knitr', 'progress', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'ggplot2', 'lubridate', 'TMB', 'sf', 'stringr', 'tidyr',
  'purrr', 'dplyr', 'trip', 'assertthat', 'patchwork', 'future',
  'furrr', 'CircStats', 'mvtnorm', 'tmvtnorm', 'lifecycle', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'rgeos', 'rworldmap'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Note: found 41 marked UTF-8 strings
Packages required but not available:
  'shiny', 'shiny.semantic', 'htmltools', 'jsonlite'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'htmltools'

Packages suggested but not available for checking:
  'covr', 'knitr', 'testthat', 'rsvg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'extrafont'
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'hrbrthemes', 'extrafont', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'hrbrthemes', 'extrafont', 'ggplot2'

Packages suggested but not available for checking:
  'stringr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fontBitstreamVera', 'fontLiberation'

Packages suggested but not available for checking: 'testthat', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'cowplot', 'magrittr', 'stringr', 'tibble',
  'tidyr', 'viridis', 'igraph', 'ggraph', 'minerva', 'rlang',
  'labeling'

Packages suggested but not available for checking:
  'knitr', 'infotheo', 'minet'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'rlang'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 234 marked UTF-8 strings
Packages required but not available:
  'rstan', 'arm', 'reshape2', 'ggplot2', 'bayesplot', 'matrixStats',
  'extraDistr', 'metRology', 'dplyr', 'numDeriv', 'tidyverse',
  'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'engsoccerdata', 'loo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'airportr', 'dplyr', 'magrittr', 'rlang'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'testthat', 'tibble', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'timeDate', 'timeSeries', 'fBasics'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lubridate', 'magrittr', 'dplyr', 'plyr', 'stringr', 'lmodel2',
  'reshape2', 'ggplot2', 'ggplotify', 'gridExtra', 'scales', 'rvest',
  'xml2', 'ggnewscale', 'patchwork'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ellipsis', 'magrittr', 'rlang', 'tibble'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'knitr', 'readr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'iterators'

Packages suggested but not available for checking:
  'randomForest', 'doMC', 'doParallel', 'testthat', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'astsa', 'reshape2'

Packages suggested but not available for checking:
  'psd', 'fBasics', 'knitr', 'markdown', 'testthat', 'rSFA'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quantreg', 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forecast', 'ggplot2', 'mtsdi', 'psych', 'quadprog', 'quantreg'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DT', 'golem', 'config', 'forecast', 'htmltools', 'lubridate',
  'stringr', 'scales', 'rlang', 'shinyjs', 'shinyAce', 'echarts4r',
  'htmlwidgets', 'colourpicker', 'shinydashboard', 'shiny',
  'shinycustomloader', 'shinydashboardPlus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forecast', 'thief', 'doParallel', 'foreach', 'ggplot2', 'purrr',
  'zoo'

Packages suggested but not available for checking:
  'GMDH', 'knitr', 'rmarkdown', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'rlang', 'magrittr', 'lubridate', 'ggplot2',
  'future.apply', 'purrr', 'data.table', 'dtplyr', 'tibble'

Packages suggested but not available for checking:
  'glmnet', 'DT', 'knitr', 'rmarkdown', 'xgboost', 'randomForest',
  'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'colorspace', 'fracdiff', 'ggplot2', 'lmtest', 'magrittr', 'Rcpp',
  'timeDate', 'tseries', 'urca', 'zoo', 'RcppArmadillo'

Packages suggested but not available for checking:
  'forecTheta', 'knitr', 'rmarkdown', 'rticles', 'seasonal',
  'testthat', 'uroot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'PSF', 'decomposedPSF', 'ggplot2', 'gridExtra', 'imputeTestbench',
  'reshape2', 'forecast', 'circlize', 'RColorBrewer'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'osqp', 'cli', 'corpcor', 'mathjaxr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'forecast', 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'genetics', 'combinat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tcltk2', 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GA', 'zoo', 'doParallel', 'ggplot2', 'directlabels', 'cowplot',
  'moments', 'Rcpp', 'jsonlite', 'progress', 'rcorpora', 'scales',
  'viridisLite', 'fields', 'RColorBrewer', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'evd'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'purrr', 'tibble', 'magrittr', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'randomForest', 'ranger', 'parsnip', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'randomForest', 'nloptr', 'moments'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'rlang', 'glue', 'ggplot2', 'stringr', 'dplyr', 'tidyr',
  'purrr', 'ggridges', 'mvnfast', 'sf', 'sfheaders', 'snakecase',
  'tibble', 'yardstick', 'blockCV', 'forcats', 'patchwork'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'purrr'

Package suggested but not available for checking: 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ars', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'igraph', 'VGAM', 'sp', 'viridis', 'rgeos',
  'spatstat.core', 'spatstat.geom', 'poweRlaw'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'tidyr', 'ggplot2'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggthemes', 'tidyr', 'broom', 'purrr', 'plyr',
  'tibble', 'systemfit', 'ggpmisc', 'rlang', 'car', 'magrittr',
  'minpack.lm', 'FinCal', 'scales', 'ggdendro', 'gridExtra', 'shiny',
  'miniUI'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyselect', 'formattable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'broom', 'rlang', 'tibble'

Packages suggested but not available for checking: 'metafor', 'labelled'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gridExtra', 'gtable'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'vdiffr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'checkmate'

Packages suggested but not available for checking:
  'testthat', 'abind', 'knitr', 'rmarkdown', 'rmeta', 'dplyr', 'tidyr',
  'rlang'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'ggplot2', 'rapportools', 'partykit', 'pkgKitten', 'knitr',
  'mlbench'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'dplyr', 'viridis', 'tidyr', 'moments', 'tibble'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.tree'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'APfun', 'doParallel', 'foreach', 'imager', 'plyr', 'progress',
  'raster', 'Rcpp', 'rgeos', 'sp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'nloptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'magrittr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'tibble', 'reticulate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'data.table', 'xml2', 'raster', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'homals', 'sampling', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
INFCvpe: no visible binding for global variable 'INFCstats'
INFCvpe: no visible binding for global variable 'INFCdomain'
Undefined global functions or variables:
  INFCdomain INFCstats
Skipping vignette re-building
Packages suggested but not available for checking:
  'shiny', 'testit', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testit)
  Error in library(testit) : there is no package called 'testit'
  Execution halted
Packages required but not available:
  'htmltools', 'htmlwidgets', 'knitr', 'rmarkdown'

Packages suggested but not available for checking:
  'testthat', 'DT', 'shiny', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'operator.tools'

Packages suggested but not available for checking: 'magrittr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'meta'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Packages required but not available:
  'pedtools', 'glue', 'pedmut', 'pedprobr', 'ribd'

Packages suggested but not available for checking:
  'ggplot2', 'poibin', 'scales', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'Cairo', 'ggplot2', 'tibble'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dbscan', 'Distance', 'ggvoronoi', 'htmlwidgets', 'lidR', 'moments',
  'plotly', 'progress', 'Rcpp', 'raster', 'RCSF', 'scales', 'sp',
  'tidyr', 'vroom', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'FactoMineR', 'forcats', 'ggplot2', 'knitr', 'likert',
  'rmarkdown', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'sp', 'maps', 'shapefiles'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'TreeSim'

Packages suggested but not available for checking:
  'paleotree', 'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'reshape2', 'dplyr', 'RStoolbox', 'yaImpute', 'sp',
  'spatstat.geom', 'spatstat', 'randomForest', 'rgdal', 'caret',
  'trend', 'data.table'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'raster'

Packages suggested but not available for checking:
  'rgdal', 'knitr', 'rmarkdown', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'tidyr', 'purrr', 'ggplot2',
  'rbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'withr', 'snow', 'doSNOW', 'foreach', 'mclust', 'tensor', 'tidyr',
  'data.table', 'LaplacesDemon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reshape', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'FNN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'mclust', 'flexmix', 'prabclus', 'diptest', 'robustbase', 'kernlab'

Packages suggested but not available for checking:
  'tclust', 'pdfCluster', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ThreeWay', 'mvtnorm', 'ExPosition', 'rootSolve', 'klaR', 'GGally',
  'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'readr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'Formula', 'Rcpp', 'dreamerr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'fixest', 'pdftools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'iotools'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'fAssets', 'fCopulae',
  'robustbase', 'Rglpk', 'slam', 'Rsolnp', 'quadprog', 'kernlab',
  'rneos'

Packages suggested but not available for checking:
  'Rsocp', 'Rnlminb2', 'Rdonlp2', 'Rsymphony', 'dplR', 'bcp', 'fGarch',
  'mvoutlier'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'expsmooth', 'fma', 'forecast', 'ggplot2',
  'magrittr', 'purrr', 'rstudioapi'

Packages suggested but not available for checking:
  'GGally', 'gridExtra', 'Mcomp', 'seasonal', 'tidyverse', 'vars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'dplyr', 'fable', 'fabletools', 'feasts', 'ggplot2',
  'lubridate', 'magrittr', 'purrr', 'rstudioapi', 'tibble', 'tidyr',
  'tsibble', 'tsibbledata', 'urca'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forecast', 'fma', 'expsmooth', 'lmtest', 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FuzzyNumbers', 'FuzzyNumbers.Ext.2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'longmemo', 'forecast', 'urca'
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'psych', 'clusterGeneration'

Packages suggested but not available for checking:
  'knitr', 'gstat', 'sp', 'rmarkdown', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'emg', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'abind'

Packages suggested but not available for checking:
  'wavelets', 'pcaPP', 'RandomFields', 'snowFT'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'imager', 'plyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'metafor', 'netmeta', 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'magrittr', 'msm', 'ggplot2', 'expint', 'tibble', 'numDeriv'

Packages suggested but not available for checking:
  'dplyr', 'plotly', 'gridExtra', 'egg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'cmprsk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'survC1', 'doBy', 'statmod', 'shiny', 'rootSolve'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'nleqslv', 'reshape2', 'ggplot2', 'numDeriv', 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bbmle', 'lamW'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'stringr', 'tidyselect', 'purrr', 'janitor', 'rlang',
  'lubridate', 'magrittr', 'tibble', 'rstudioapi', 'forcats', 'bit64',
  'rio', 'readr', 'vroom', 'fs', 'rlist', 'fastDummies'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'badger', 'readxl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sampling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'cccp', 'Rglpk', 'timeSeries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
Skipping vignette re-building
Packages suggested but not available for checking: 'e1071', 'XML', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Errors in running code in vignettes:
when running code in 'lala2015pmml.Rtex'
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  'lala2015pmml.Rtex' using 'UTF-8'... failed to complete the test
Packages required but not available: 'CCP', 'calibrate', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'corrplot', 'fdadensity', 'fdapace', 'pracma', 'osqp'

Packages suggested but not available for checking: 'Rcpp', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'rlang', 'tibble'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'knitr', 'purrr', 'rmarkdown',
  'testthat', 'xts', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'partitions', 'mathjaxr', 'disordR'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'magrittr', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'magrittr', 'magic', 'plyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'permutations', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'smacof', 'vegan', 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pkgfilecache', 'xml2', 'rmarkdown'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'oro.nifti', 'gifti', 'cifti'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'neurobase', 'R.utils', 'reshape2'

Packages suggested but not available for checking:
  'magrittr', 'knitr', 'oro.nifti', 'rgl', 'rmarkdown', 'pander',
  'fslr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmertree', 'pre', 'WGCNA'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'lmtest', 'polspline'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'tibble', 'dplyr', 'tidyr', 'cli', 'httr', 'rvest',
  'stringr', 'purrr', 'assertthat', 'rlang', 'fs', 'readr'

Packages suggested but not available for checking:
  'markdown', 'rmarkdown', 'knitr', 'lubridate', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'mvtnorm', 'fda', 'freqdom'

Package suggested but not available for checking: 'MARSS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'matrixcalc'

Packages suggested but not available for checking: 'fda', 'MARSS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'GGally', 'FNN', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'cubature'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'remotes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reshape2', 'ggplot2', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'vars', 'urca', 'knitr', 'pbapply'

Packages suggested but not available for checking:
  'testthat', 'stringr', 'mAr', 'reshape2', 'ggplot2', 'zoo', 'BigVAR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rmarkdown', 'knitr', 'DT', 'ggplot2', 'gtools'

Packages suggested but not available for checking:
  'haven', 'testthat', 'covr', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'stringr', 'miscTools', 'Hmisc', 'pROC', 'RcppArmadillo'

Packages suggested but not available for checking:
  'gplots', 'RColorBrewer', 'cvTools', 'glmnet', 'randomForest',
  'e1071', 'naivebayes', 'mRMRe', 'epiR', 'DescTools', 'irr',
  'survminer', 'BeSS', 'ggplot2', 'robustbase', 'mda', 'twosamples'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sass', 'htmltools', 'shiny', 'rstudioapi'

Packages suggested but not available for checking:
  'shinyWidgets', 'shinydashboard', 'bs4Dash', 'knitr', 'rmarkdown',
  'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'FrF2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DoE.base', 'sfsmisc', 'scatterplot3d', 'igraph'

Packages suggested but not available for checking: 'FrF2.catlg128', 'BsMD'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'glue', 'httr', 'jsonlite', 'purrr', 'readr',
  'yaml'

Packages suggested but not available for checking:
  'hms', 'knitr', 'lubridate', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'callr', 'checkmate', 'desc', 'devtools', 'digest', 'knitr',
  'packager', 'pkgload', 'reshape', 'rmarkdown', 'RUnit', 'testthat',
  'tinytest', 'whoami'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages unavailable to check Rd xrefs: 'devtools', 'callr'
Running 'runit.R'
Running the tests in 'tests/runit.R' failed.
Complete output:
  > #!/usr/bin/Rscript --vanilla
  > is_failure <- function(result) {
  +     res <- RUnit::getErrors(result)
  +     names(res) <- tolower(names(res)) # soothe lintr
  +     sum_of_exceptions <- res[["nerr"]] + res[["nfail"]]
  +     fail <- as.logical(sum_of_exceptions)
  +     return(fail)
  + }
  > 
  > if (interactive()) {
  +     pkgload::load_all(path = ".") # needed to use pkgload's shim version of
  +     # base's system.file
  +     unit_dir <- system.file("inst", "runit_tests", package = "fritools")
  + } else {
  +     require("fritools", quietly = TRUE, character.only = TRUE) ||
  +         pkgload::load_all(path = ".") # needed to use pkgload's shim version of
  +     r_call <- commandArgs(trailingOnly = FALSE)
  +     if (any(grepl("--file", r_call))) {
  +         unit_dir <- file.path("inst", "runit_tests")
  +     } else {
  +         unit_dir <- system.file("runit_tests", package = "fritools")
  +     }
  + }
  
  Attaching package: 'fritools'
  
  The following object is masked from 'package:base':
  
      tapply
  
  > if (! dir.exists(unit_dir)) {
  +     stop("Can not find RUnit test directory ", unit_dir,
  +          ". Try to (re)install the package first.")
  + }
  > setup_file <- file.path(unit_dir, "setup.R")
  > if (file.exists(setup_file)) source(setup_file)
  > package_suite <- RUnit::defineTestSuite("fritools_unit_test",
  +                                         dirs = unit_dir,
  +                                         testFileRegexp = "^runit.*\\.[rR]",
  +                                         testFuncRegexp = "^test_+")
  Error in loadNamespace(x) : there is no package called 'RUnit'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available:
  'digest', 'dplyr', 'ggplot2', 'Hmisc', 'plyr', 'Rcpp', 'sp',
  'spacetime', 'sparseinv', 'statmod', 'TMB', 'ggpubr', 'reshape2',
  'scales', 'RcppEigen'

Packages suggested but not available for checking:
  'covr', 'dggrids', 'gstat', 'INLA', 'knitr', 'mapproj', 'rgeos',
  'rgdal', 'spdep', 'splancs', 'testthat', 'verification'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/FRK_intro.Rnw'
   'inst/doc/FRK_non-Gaussian.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'frm', 'frmpd'
Packages unavailable to check Rd xrefs: 'frm', 'frmhet'
Packages required but not available: 'partitions', 'Rmpfr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'frmhet', 'frmpd'
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'moments', 'PDQutils', 'e1071', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/fromo.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'micEcon', 'lmtest', 'moments', 'Formula', 'miscTools', 'plm'

Packages suggested but not available for checking: 'MCMCpack', 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'classInt', 'colorspace', 'rgl', 'sp'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'httr', 'jsonlite', 'tibble', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cna', 'dplyr', 'Rfast', 'magrittr', 'rlang'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'tidyverse', 'zoo', 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'FSA'
Packages required but not available:
  'car', 'dunn.test', 'lmtest', 'plotrix', 'withr'

Packages suggested but not available for checking:
  'DescTools', 'dplyr', 'fishmethods', 'FSAdata', 'knitr', 'marked',
  'nlstools', 'pkgdown', 'plyr', 'psych', 'Rcapture', 'rmarkdown',
  'testthat', 'tibble', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reshape', 'freesurferformats', 'pkgfilecache', 'rgl', 'squash',
  'fields', 'viridis', 'data.table', 'magick'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'sphereplot', 'misc3d',
  'RColorBrewer', 'Rvcg', 'igraph', 'pracma'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'caret', 'gsubfn', 'hmeasure'

Packages suggested but not available for checking:
  'ada', 'arm', 'Boruta', 'bst', 'C50', 'car', 'caTools', 'Cubist',
  'e1071', 'earth', 'elasticnet', 'ellipse', 'evtree', 'extraTrees',
  'fastICA', 'foba', 'gam', 'gbm', 'glmnet', 'hda', 'HDclassif',
  'Hmisc', 'ipred', 'kernlab', 'kknn', 'klaR', 'kohonen', 'KRLS',
  'lars', 'leaps', 'LogicReg', 'mboost', 'mda', 'mlbench', 'neuralnet',
  'nodeHarvest', 'obliqueRF', 'pamr', 'partDSA', 'party', 'penalized',
  'penalizedLDA', 'pls', 'pROC', 'proxy', 'qrnn', 'quantregForest',
  'randomForest', 'RANN', 'relaxo', 'rFerns', 'rocc', 'rrcov', 'RRF',
  'rrlda', 'RSNNS', 'RWeka', 'sda', 'sparseLDA', 'spls', 'stepPlr',
  'superpc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kyotil', 'reticulate'

Packages suggested but not available for checking: 'R.rsp', 'RUnit'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rrcov', 'rJava', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'entropy', 'randomForest', 'RWeka'

Package suggested but not available for checking: 'mlbench'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'iterators', 'BH', 'RcppArmadillo', 'testthat'

Packages suggested but not available for checking:
  'testthat', 'RcppArmadillo', 'dplyr', 'RWeka', 'entropy',
  'FSelector', 'randomForest', 'doParallel', 'covr', 'htmltools',
  'magrittr', 'knitr', 'RTCGA.rnaseq', 'ggplot2', 'microbenchmark',
  'pbapply', 'tibble', 'rmarkdown', 'lintr', 'pkgdown', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'neuralnet', 'digest', 'caret', 'mlbench', 'Rdpack', 'GA', 'dplyr',
  'tidyr', 'prodlim', 'rlang', 'purrr', 'e1071'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'RSNNS'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'purrr', 'dplyr', 'tibble', 'tidyr', 'rlang', 'readxl',
  'readtext', 'zip', 'xml2', 'rjson', 'shiny', 'R.utils'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'oro.nifti', 'neurobase', 'R.utils'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FuzzyR', 'lsa'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rfast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'labdsv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'psych', 'corpcor', 'GPArotation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
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  'knitr', 'withr', 'spelling', 'vctrs'

VignetteBuilder package required for checking but not installed: 'knitr'
GNU make is a SystemRequirements.
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'lavaan', 'plyr', 'reshape2', 'ggplot2', 'scales', 'tcltk2',
  'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'sf', 'FuzzyR', 'dplyr', 'ggplot2', 'stringr', 'tibble',
  'pso', 'e1071', 'lwgeom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'igraph', 'mvtnorm', 'qtl', 'stringr', 'glmnet', 'qpdf',
  'RcppEigen'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'lintr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fstcore', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'bit64', 'data.table', 'lintr', 'nanotime', 'crayon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'pbapply', 'purrr', 'dplyr', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'jsonlite', 'flextable', 'tidyr', 'purrr', 'magrittr',
  'rmarkdown', 'rlang', 'stringr', 'tibble', 'tidyselect', 'xfun',
  'yaml', 'vctrs'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'timeDate', 'timeSeries', 'fBasics'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'forecast', 'rainbow', 'sde', 'colorspace', 'pcaPP', 'fda',
  'pdfCluster', 'ecp', 'strucchange', 'e1071', 'psych', 'fGarch',
  'vars', 'fdapace', 'LaplacesDemon', 'evgam', 'ROOPSD', 'glue'

Packages suggested but not available for checking:
  'fds', 'R2jags', 'meboot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sna'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'dplyr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'snowfall', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'afex'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ggplot2', 'igraph', 'devtools', 'ggrepel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'narray', 'biclust', 'reshape', 'RColorBrewer', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fda', 'dplyr', 'ggplot2', 'rlang', 'tidyr', 'patchwork', 'RSpectra'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking: 'testthat', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rdpack', 'dqrng', 'BH'

Packages suggested but not available for checking:
  'Ckmeans.1d.dp', 'DescTools', 'DiffXTables', 'GridOnClusters',
  'infotheo', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvbutils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'keras', 'tensorflow', 'fda.usc', 'fda', 'ggplot2', 'ggpubr',
  'caret', 'pbapply', 'reshape2', 'flux', 'doParallel', 'foreach'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'multcompView', 'clusterCrit'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'dplyr', 'tidyr', 'stringr', 'purrr', 'magrittr', 'tibble',
  'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'ggplot2', 'igraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'abind', 'fields', 'foreach'

Packages suggested but not available for checking:
  'covr', 'fda', 'ggplot2', 'gridExtra', 'reshape2', 'zoo', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'future.apply', 'geometry', 'vegan'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fda', 'elasticnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clue', 'GPArotation', 'mvtnorm', 'nleqslv', 'Rcsdp', 'RSpectra'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'knitr', 'scales', 'qdapRegex', 'microbenchmark',
  'doFuture', 'future', 'progressr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fda'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'timeDate', 'timeSeries', 'fBasics', 'urca'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fda', 'funFEM', 'abind', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'refund', 'tvem'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'ROCR', 'ggplot2', 'gridExtra', 'pander', 'reshape2',
  'scales', 'dplyr', 'lazyeval', 'RColorBrewer', 'moments', 'entropy',
  'cli', 'stringr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'glue', 'tibble', 'magrittr', 'broom', 'purrr', 'rlang',
  'tidyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggrepel', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'COUNT', 'tidyr', 'covr', 'Cairo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'purrr', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'ade4', 'ggplot2', 'knitr', 'rmarkdown', 'testthat', 'tidytext'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'ade4'
'LazyData' is specified without a 'data' directory
Running examples in 'funrar-Ex.R' failed
The error most likely occurred in:

> ### Name: distinctiveness
> ### Title: Functional Distinctiveness on site-species matrix
> ### Aliases: distinctiveness
> 
> ### ** Examples
> 
> data("aravo", package = "ade4")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called 'ade4'
Calls: data -> find.package
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Jmisc', 'Kendall', 'Rdpack', 'FNN', 'dbscan', 'igraph'

Packages suggested but not available for checking:
  'covid19us', 'Ecdat', 'ggplot2', 'gridExtra', 'knitr', 'patchwork',
  'randomcoloR', 'readxl', 'reshape2', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rmpfr', 'gmp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'dplyr'

Packages suggested but not available for checking:
  'magrittr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'ellipsis', 'globals', 'lifecycle', 'purrr', 'rlang',
  'vctrs'

Packages suggested but not available for checking:
  'carrier', 'covr', 'dplyr', 'knitr', 'listenv', 'magrittr',
  'rmarkdown', 'testthat', 'withr', 'tidyselect'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'attachment', 'cli', 'desc', 'devtools', 'glue', 'here', 'magrittr',
  'parsermd', 'roxygen2', 'stringr', 'tibble', 'tidyr', 'usethis'

Packages suggested but not available for checking:
  'knitr', 'pkgload', 'rcmdcheck', 'rmarkdown', 'rstudioapi',
  'spelling', 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'irlba', 'Rcpp', 'glmnet', 'RSpectra', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'jsonlite', 'magrittr', 'shiny'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bbmle'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'mvtnorm'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'lambda.r', 'futile.options'

Packages suggested but not available for checking: 'testthat', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'futile.options', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/bayesianIncidenceRateModel.Rnw'
(Is a VignetteBuilder field missing?)
'LazyData' is specified without a 'data' directory
Files named as vignettes but with no recognized vignette engine:
   'vignettes/bayesianIncidenceRateModel.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'future', 'globals'

Packages suggested but not available for checking:
  'listenv', 'R.rsp', 'markdown'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'future', 'batchtools'

Packages suggested but not available for checking:
  'future.apply', 'listenv', 'markdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'future', 'callr'

Packages suggested but not available for checking:
  'globals', 'future.apply', 'listenv', 'markdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'ggplot2', 'ggthemes', 'leaflet', 'Rcpp',
  'stringr', 'tidyr'

Packages suggested but not available for checking:
  'gridExtra', 'knitr', 'mapproj', 'maps', 'rmarkdown', 'testthat',
  'weathermetrics'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'globals', 'listenv', 'parallelly'

Packages suggested but not available for checking:
  'RhpcBLASctl', 'R.rsp', 'markdown'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'cli', 'crayon', 'prettyunits', 'sessioninfo'

Packages suggested but not available for checking:
  'commonmark', 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'assertthat', 'progress', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'randomForest', 'foreach', 'doParallel', 'ggplot2', 'mvtnorm'

Packages suggested but not available for checking: 'WGCNA', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringdist', 'stringr', 'dplyr', 'tidyr', 'purrr', 'geosphere',
  'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'ggplot2', 'qdapDictionaries', 'readr', 'rvest',
  'rmarkdown', 'maps', 'IRanges', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ROI', 'FuzzyNumbers', 'ROI.plugin.glpk'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RankAggreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'FuzzyNumbers'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'digest'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/FuzzyNumbersTutorial.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/FuzzyNumbersTutorial.Rnw'
(Is a VignetteBuilder field missing?)
Package required but not available: 'FuzzyNumbers'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'limSolve', 'quadprog'

Packages suggested but not available for checking:
  'testthat', 'FuzzyNumbers'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'modEvA'

Packages suggested but not available for checking:
  'maptools', 'PBSmapping', 'raster', 'sp', 'terra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'MultinomialCI', 'FuzzyNumbers', 'DEoptim'

Packages suggested but not available for checking: 'markovchain', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FuzzyNumbers', 'polynom'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
NeedsCompilation field must take value 'yes' or 'no'
'library' or 'require' call to 'splines' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'splines'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
gensurf: no visible global function definition for 'persp'
gensurf: no visible global function definition for 'rainbow'
plotMF: no visible global function definition for 'plot.new'
plotMF: no visible global function definition for 'plot.window'
plotMF: no visible global function definition for 'runif'
plotMF: no visible global function definition for 'predict'
plotMF: no visible global function definition for 'interpSpline'
plotMF: no visible global function definition for 'lines'
plotMF: no visible global function definition for 'text'
plotMF: no visible global function definition for 'title'
plotMF: no visible global function definition for 'axis'
plotMF: no visible global function definition for 'box'
Undefined global functions or variables:
  axis box interpSpline lines persp plot.new plot.window predict
  rainbow runif text title
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "axis", "box", "lines", "persp", "plot.new",
             "plot.window", "text", "title")
  importFrom("stats", "predict", "runif")
to your NAMESPACE file.
Packages required but not available: 'reticulate', 'R6'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'cvTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'cffdrs'
Packages required but not available:
  'collapse', 'Formula', 'Rcpp', 'dreamerr', 'Matrix.utils',
  'generics', 'gtools', 'dqrng', 'RcppEigen'

Packages suggested but not available for checking:
  'fixest', 'lfe', 'data.table', 'fabricatr', 'tinytest', 'covr',
  'knitr', 'rmarkdown', 'broom', 'modelsummary', 'RStata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'e1071', 'imager', 'neuralnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'strucchange', 'car', 'sandwich'

Packages suggested but not available for checking: 'lmtest', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doFuture', 'foreach', 'future', 'geosphere', 'ggplot2', 'JOPS',
  'progressr'

Packages suggested but not available for checking:
  'magrittr', 'progress', 'scales', 'tictoc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fastmatch', 'data.table', 'hutils'

Packages suggested but not available for checking:
  'testthat', 'withr', 'rlang', 'zoo', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'KEGGREST', 'minval', 'sybil'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'xlsx', 'rJava', 'xlsxjars', 'reshape2', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'cgdsr', 'stringr', 'htmlwidgets'

Packages suggested but not available for checking:
  'shiny', 'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GA', 'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'hash'

Package suggested but not available for checking: 'ArrayBin'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'unittest'
Running 'test-gadget.R'
Running the tests in 'tests/test-gadget.R' failed.
Complete output:
  > library(gadget2)
  > library(unittest, quietly = TRUE)
  Error in library(unittest, quietly = TRUE) : 
    there is no package called 'unittest'
  Execution halted
FPTsimul: no visible global function definition for 'runif'
histplot: no visible global function definition for 'dev.new'
histplot: no visible global function definition for 'hist'
histplot: no visible global function definition for 'par'
histplot: no visible global function definition for 'legend'
mdt: no visible binding for global variable 'deltat'
plot.FPTdensity: no visible global function definition for 'dev.new'
res_summary: no visible global function definition for 'write.table'
res_summary: no visible global function definition for 'sd'
res_summary: no visible global function definition for 'median'
vdt: no visible binding for global variable 'deltat'
Undefined global functions or variables:
  deltat dev.new hist legend median par runif sd write.table
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "hist", "legend", "par")
  importFrom("stats", "deltat", "median", "runif", "sd")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Packages required but not available:
  'sp', 'classInt', 'sf', 'rgdal', 'RColorBrewer', 'maptools',
  'stringr', 'raster', 'rosm', 'jsonlite', 'gridExtra', 'rgeos',
  'ggmap', 'ggspatial', 'ggplot2', 'dplyr', 'prettymapr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra', 'mapproj', 'tidyr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixStats', 'R.methodsS3'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'geosphere', 'magrittr', 'maptools', 'raster', 'rlang', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fields', 'FNN'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
CI.RMSEA: no visible global function definition for 'qchisq'
CI.RMSEA: no visible global function definition for 'pchisq'
GAIPE.RMSEA: no visible global function definition for 'par'
GAIPE.RMSEA: no visible global function definition for 'abline'
GAIPE.RMSEA: no visible global function definition for 'colors'
GAIPE.RMSEA: no visible global function definition for 'text'
GAIPE.RMSEA: no visible global function definition for 'arrows'
GAIPE.RMSEA: no visible global function definition for 'points'
GAIPE.RMSEA: no visible global function definition for 'axis'
GAIPE.RMSEA: no visible global function definition for 'lines'
GAIPE.RMSEA: no visible global function definition for 'legend'
GAIPE.RMSEA: no visible global function definition for 'pchisq'
GAIPE.RMSEA: no visible global function definition for 'qchisq'
GAIPE.RMSEA: no visible global function definition for 'mtext'
GAIPE.RMSEA: no visible global function definition for 'title'
PA.RMSEA: no visible global function definition for 'pchisq'
PA.RMSEA: no visible global function definition for 'qchisq'
Undefined global functions or variables:
  abline arrows axis colors legend lines mtext par pchisq points qchisq
  text title
Consider adding
  importFrom("grDevices", "colors")
  importFrom("graphics", "abline", "arrows", "axis", "legend", "lines",
             "mtext", "par", "points", "text", "title")
  importFrom("stats", "pchisq", "qchisq")
to your NAMESPACE file.
Packages required but not available:
  'assertthat', 'crul', 'data.table', 'data.tree', 'digest', 'glue',
  'httr', 'jsonlite', 'lifecycle', 'rlang', 'sf', 'stringr', 'tibble',
  'tidyselect', 'wellknown'

Packages suggested but not available for checking:
  'vcr', 'covr', 'dplyr', 'knitr', 'magrittr', 'pkgdown', 'rmarkdown',
  'taxize', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'cli', 'crayon', 'dplyr', 'tidyr', 'purrr', 'rstudioapi',
  'tibble', 'gargle', 'ryandexdirect', 'rfacebookstat', 'rvkstat',
  'rmytarget', 'rym', 'getProxy', 'rgoogleads', 'rappsflyer'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'circlize', 'data.table', 'doParallel', 'dplyr', 'DT', 'ggplot2',
  'foreach', 'RColorBrewer', 'rtracklayer', 'stringr', 'unbalhaar',
  'webshot'

Packages suggested but not available for checking:
  'Hmisc', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'genalg', 'DEoptim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'httr', 'jsonlite', 'lubridate', 'rlang',
  'tidyjson', 'tibble', 'tidyr', 'tidyselect'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'lme4', 'geoR'
Packages required but not available: 'doParallel', 'gtools', 'foreach'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'hrbrthemes', 'gganimate', 'viridis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'randomForest', 'latticeExtra'

Packages suggested but not available for checking:
  'leaps', 'quantreg', 'sp', 'diagram', 'oz', 'forecast', 'kernlab',
  'Ecdat', 'mlbench', 'DAAGbio', 'car', 'DAAG', 'ape', 'knitr',
  'prettydoc', 'rmarkdown', 'bookdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'bookdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'VineCopula', 'gsl', 'numDeriv', 'copula', 'igraph', 'foreach',
  'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gam', 'mlbench', 'caTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gridExtra'

Packages suggested but not available for checking: 'hexbin', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'shiny'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'maxLik', 'Formula', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'e1071', 'lpSolveAPI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lpSolveAPI', 'combinat', 'gtools', 'ineq', 'kappalab'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gamlss.dist', 'gamlss'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gamlss.dist', 'gamlss'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gamlss.dist', 'gamlss'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gamlss.dist', 'gamlss'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rpanel', 'gamlss.dist', 'gamlss.tr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'gamlss'
Packages required but not available:
  'gamlss', 'foreach', 'doParallel', 'gamlss.data', 'gamlss.dist',
  'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gamlss.dist', 'gamlss', 'ggplot2', 'gamlss.foreach', 'ggridges',
  'ellipse'

Package suggested but not available for checking: 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gamlss', 'gamlss.dist'

Packages suggested but not available for checking:
  'gamlss.cens', 'gamlss.tr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gamlss', 'glmnet', 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gamlss.dist', 'gamlss'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gamlss'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gamlss.data', 'gamlss.dist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gamlss.dist', 'gamlss', 'gamlss.add', 'spam'

Packages suggested but not available for checking:
  'knitr', 'spdep', 'maptools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gamlss.dist', 'gamlss'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gamm4', 'doParallel', 'foreach', 'plotly', 'RColorBrewer'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'IsoplotR', 'rlang', 'rxylib'

Packages suggested but not available for checking:
  'covr', 'knitr', 'magrittr', 'rmarkdown', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'foreach'

Packages suggested but not available for checking: 'akima', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'robustHD', 'foreach', 'doParallel', 'Rcpp',
  'RcppArmadillo'

Package suggested but not available for checking: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'Ecdat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'mda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'httpuv', 'httr', 'googleAnalyticsR', 'jsonlite',
  'lazyeval', 'lubridate', 'plyr', 'R6', 'rvest', 'stringr', 'XML',
  'xml2', 'scales', 'selectr', 'tibble'

Packages suggested but not available for checking:
  'devtools', 'ggplot2', 'knitr', 'rmarkdown', 'testthat', 'dplyr',
  'purrr', 'tidyr', 'spelling', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'tensorflow'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'GANPA'
Package required but not available: 'GANPAdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'data.table', 'sp', 'tmap', 'sf', 'geosphere', 'fasterize',
  'rmarkdown'

Packages suggested but not available for checking:
  'knitr', 'rgdal', 'rgeos', 'kableExtra', 'DT'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'iterators'

Packages suggested but not available for checking:
  'doParallel', 'doRNG', 'knitr', 'lhs', 'caret', 'mlbench', 'e1071',
  'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ranger', 'glmnet', 'magrittr', 'dplyr', 'forcats', 'ggplot2',
  'tidyr', 'foreach', 'tidyselect', 'doParallel'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'fields', 'foreach', 'Rcpp', 'quantreg'

Packages suggested but not available for checking:
  'roxygen2', 'spam', 'testthat', 'abind'

Packages which this enhances but not available for checking:
  'raster', 'doParallel', 'doMPI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking:
  'knitr', 'dendsort', 'RColorBrewer', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'BradleyTerry2', 'MCMCglmm', 'R2jags', 'bdsmatrix', 'calibrate',
  'circlize', 'coda', 'cowplot', 'coxme', 'dplyr', 'forestplot',
  'gap.datasets', 'genetics', 'ggplot2', 'haplo.stats', 'jsonlite',
  'kinship2', 'magic', 'matrixStats', 'meta', 'metafor', 'mets',
  'pedigree', 'pedigreemm', 'plotly', 'plotrix', 'reshape', 'rmeta',
  'rms'
Packages unavailable to check Rd xrefs: 'haplo.stats', 'genetics'
Errors in running code in vignettes:
when running code in 'gap.Rnw'

> library(gap)
gap version 1.2.3-1

> data(lukas)

> library(kinship2)

  When sourcing 'gap.R':
Error: there is no package called 'kinship2'
Execution halted

  'gap.Rnw'... failed
  'jss.Rnw'... OK
Error(s) in re-building vignettes:
--- re-building 'gap.Rnw' using Sweave
gap version 1.2.3-1

Error: processing vignette 'gap.Rnw' failed with diagnostics:
 chunk 1 
Error in library(kinship2) : there is no package called 'kinship2'

--- failed re-building 'gap.Rnw'

--- re-building 'jss.Rnw' using Sweave
--- finished re-building 'jss.Rnw'

SUMMARY: processing the following file failed:
  'gap.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'foreach', 'iterators', 'cli', 'crayon', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'doParallel', 'doRNG', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rsolnp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rsolnp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'vcfR'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'fs', 'glue', 'httr', 'jsonlite', 'rappdirs', 'rlang',
  'rstudioapi', 'withr'

Packages suggested but not available for checking:
  'aws.ec2metadata', 'aws.signature', 'covr', 'httpuv', 'knitr',
  'mockr', 'rmarkdown', 'sodium', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'attempt'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forecast', 'ggplot2', 'Rsolnp', 'pracma', 'signal', 'zoo',
  'lubridate', 'crayon', 'nloptr', 'BB', 'GA', 'dfoptim', 'pso', 'FKF',
  'tswge'

Packages suggested but not available for checking:
  'longmemo', 'yardstick', 'tidyverse', 'testthat', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'chemometrics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sfsmisc', 'data.table', 'AICcmodavg'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'RSpectra', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'markdown', 'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'Rsolnp', 'xts', 'numDeriv', 'zoo', 'cubature',
  'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'tibble', 'ggplot2', 'rstan', 'assertthat',
  'stringr', 'shiny', 'utf8', 'StanHeaders', 'BH', 'RcppEigen',
  'RcppParallel'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'covr', 'testthat', 'vdiffr', 'rstantools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppParallel', 'RcppEigen'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/gaston-faq.Rnw'
   'inst/doc/gaston.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'fields', 'lifecycle', 'raster', 'rlang', 'sparr', 'SpatialPack',
  'spatstat.geom', 'tibble'

Packages suggested but not available for checking:
  'dplyr', 'flowWorkspaceData', 'ncdfFlow', 'R.rsp', 'spelling',
  'testthat', 'usethis'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'R6', 'lbfgs', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark', 'numDeriv'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'deSolve'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'fortunes', 'rmsfact'
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'metR', 'rgl', 'viridisLite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'polynom', 'orthopolynom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SSBtools', 'RegSDC'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FD', 'GA'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'jpeg', 'zoo', 'scales', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GB2', 'minpack.lm', 'ineq', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cubature', 'hypergeo', 'laeken', 'numDeriv', 'survey'

Package suggested but not available for checking: 'simFrame'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'gsl', 'Runuran', 'RcppNumerical', 'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'readr', 'stringr', 'jsonlite', 'lubridate', 'httr',
  'purrr', 'curl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'mvtnorm', 'SKAT', 'BH'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bindata', 'rje', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gbm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gbm', 'dismo', 'beepr', 'mapplots', 'maptools', 'rgdal', 'rgeos',
  'raster', 'sf', 'shapefiles'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'gridExtra', 'knitr', 'pdp', 'RUnit', 'tinytest', 'vip',
  'viridis'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/gbm.Rnw'
(Is a VignetteBuilder field missing?)
Packages unavailable to check Rd xrefs: 'viridis', 'pdp'
Files named as vignettes but with no recognized vignette engine:
   'vignettes/gbm.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available:
  'magrittr', 'data.table', 'rgl', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package in Depends field not imported from: 'tools'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  'tools:::.Rd_get_argument_names' 'tools:::RdTags' 'tools:::fetchRdDB'
  See the note in ?`:::` about the use of this operator.
Package required but not available: 'rjags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'doRNG', 'foreach', 'gbm', 'earth'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

Packages suggested but not available for checking:
  'classGraph', 'graph', 'Rgraphviz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
coeplot: no visible global function definition for 'axis'
coeplot: no visible global function definition for 'lines'
coeplot: no visible global function definition for 'title'
coeplot: no visible global function definition for 'legend'
corplot: no visible global function definition for 'par'
corplot: no visible global function definition for 'pairs'
corplot: no visible global function definition for 'strwidth'
lm.estimate: no visible global function definition for 'as.formula'
lm.estimate: no visible global function definition for 'glm'
panel.cor: no visible global function definition for 'par'
panel.cor: no visible global function definition for 'cor'
panel.cor: no visible global function definition for 'strwidth'
panel.cor: no visible global function definition for 'text'
panel.smooth.r: no visible global function definition for 'par'
panel.smooth.r: no visible global function definition for 'points'
panel.smooth.r: no visible global function definition for 'lines'
posplot: no visible global function definition for 'par'
posplot: no visible global function definition for 'barplot'
posplot: no visible global function definition for 'points'
Undefined global functions or variables:
  as.formula axis barplot cor glm legend lines pairs par points
  strwidth text title
Consider adding
  importFrom("graphics", "axis", "barplot", "legend", "lines", "pairs",
             "par", "points", "strwidth", "text", "title")
  importFrom("stats", "as.formula", "cor", "glm")
to your NAMESPACE file.
Packages required but not available: 'caTools', 'dplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'readr', 'reshape2', 'stringr', 'pbapply', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'pander', 'rmarkdown', 'testthat', 'vegan'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
gcat.test: no visible global function definition for 'pnorm'
generate_sub: no visible global function definition for 'runif'
pfcn: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm runif
Consider adding
  importFrom("stats", "pnorm", "runif")
to your NAMESPACE file.
Package required but not available: 'raster'

Package suggested but not available for checking: 'paleofire'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'cmprsk', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'httr', 'rvest', 'pbapply', 'data.table', 'wordcloud', 'tm'

Packages suggested but not available for checking:
  'covr', 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'EQL', 'FNN', 'gcmr', 'latticeExtra', 'mvtnorm', 'numDeriv',
  'scatterplot3d', 'snowfall', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'betareg', 'car', 'Formula', 'lmtest', 'sandwich', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjags', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arm', 'mvtnorm', 'invgamma', 'gdata', 'truncnorm', 'postpack',
  'wiqid', 'usethis', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppProgress'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rTensor', 'einsum'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'ggplot2'
Running examples in 'GDAdata-Ex.R' failed
The error most likely occurred in:

> ### Name: Decathlon
> ### Title: Top performances in the Decathlon from 1985 to 2006.
> ### Aliases: Decathlon
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(Decathlon, package="GDAdata")
> summary(Decathlon[, grep("P.*", names(Decathlon))])
   Polevault         P100m             Plj              Psp       
 Min.   :2.850   Min.   : 597.0   Min.   : 569.0   Min.   :418.0  
 1st Qu.:4.200   1st Qu.: 765.0   1st Qu.: 757.0   1st Qu.:622.0  
 Median :4.400   Median : 806.0   Median : 804.0   Median :672.0  
 Mean   :4.405   Mean   : 806.6   Mean   : 807.4   Mean   :674.6  
 3rd Qu.:4.650   3rd Qu.: 847.0   3rd Qu.: 857.0   3rd Qu.:726.0  
 Max.   :5.760   Max.   :1042.0   Max.   :1089.0   Max.   :941.0  
      Phj           P400m         P110h             Ppv              Pdt       
 Min.   : 396   Min.   :532   Min.   : 526.0   Min.   : 321.0   Min.   :231.0  
 1st Qu.: 696   1st Qu.:746   1st Qu.: 777.0   1st Qu.: 673.0   1st Qu.:600.0  
 Median : 749   Median :789   Median : 824.0   Median : 731.0   Median :655.0  
 Mean   : 749   Mean   :788   Mean   : 821.6   Mean   : 734.4   Mean   :657.8  
 3rd Qu.: 803   3rd Qu.:832   3rd Qu.: 868.0   3rd Qu.: 804.0   3rd Qu.:713.0  
 Max.   :1061   Max.   :998   Max.   :1044.0   Max.   :1152.0   Max.   :970.0  
      Pjt             P1500      
 Min.   : 330.0   Min.   :121.0  
 1st Qu.: 588.0   1st Qu.:607.0  
 Median : 644.0   Median :669.0  
 Mean   : 648.1   Mean   :661.7  
 3rd Qu.: 707.0   3rd Qu.:725.0  
 Max.   :1040.0   Max.   :946.0  
> library(ggplot2)
Error in library(ggplot2) : there is no package called 'ggplot2'
Execution halted
Packages required but not available: 'Rcpp', 'jsonlite', 'ncdf4'

Packages suggested but not available for checking:
  'knitr', 'magrittr', 'rmarkdown', 'stars', 'av', 'gifski', 'sf',
  'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sf'

Packages suggested but not available for checking:
  'raster', 'rasterVis', 'RColorBrewer', 'testthat', 'gdalUtils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'foreach', 'R.utils', 'raster', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'wdm', 'FactoMineR', 'nleqslv', 'ggplot2', 'ggrepel', 'RColorBrewer',
  'rlang', 'GGally'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'rmdformats', 'WeightedCluster', 'vcd', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'maptools', 'rgeos', 'rgdal', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'leaflet', 'shiny', 'ggplot2', 'RSQLite', 'dplyr', 'stringr', 'DT',
  'XML', 'data.table', 'R.utils', 'readr', 'jsonlite', 'progress',
  'httr', 'shinyWidgets', 'shinycssloaders'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magick', 'pdftools'

Packages suggested but not available for checking:
  'gridBezier', 'grImport', 'metapost', 'ssh', 'stevedore'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'alabama', 'ggplot2', 'numDeriv', 'Rcpp', 'Rsolnp', 'shiny',
  'shinydashboard', 'RcppArmadillo'

Packages suggested but not available for checking:
  'CDM', 'testthat', 'poLCA', 'stringr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'igraph', 'sp'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'Rcpp', 'reshape2', 'vegan', 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'stringi', 'magrittr', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'zoo', 'Rcpp', 'doParallel', 'foreach', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'dplyr', 'glue', 'lifecycle', 'magrittr', 'rlang',
  'tibble', 'tidyselect', 'withr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'magclass', 'purrr', 'readxl', 'rmarkdown',
  'stringr', 'testthat', 'tidyr', 'WDI', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'badger'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'systemfonts'

Packages suggested but not available for checking:
  'htmltools', 'testthat', 'fontquiver', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking: 'gdxrrw', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'autoimage', 'optimx', 'Rcpp'

Packages suggested but not available for checking:
  'sp', 'sf', 'testthat', 'geoR', 'gstat', 'spam', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'jsonlite', 'httr', 'knitr', 'lifecycle', 'magrittr',
  'rlang', 'tibble', 'tidyr', 'tidyselect', 'curl'

Packages suggested but not available for checking:
  'covr', 'markdown', 'readr', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rmpfr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gee', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geepack', 'ggplot2', 'geeM', 'lme4', 'MESS'

Packages suggested but not available for checking: 'testthat', 'MuMIn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rootSolve', 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'geepack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gee'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'geepack', 'testthat', 'MuMIn'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'broom', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gee', 'matrixcalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rootSolve', 'numDeriv', 'lme4'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'dplyr', 'moments', 'sandwich', 'inferference',
  'xtable', 'AER', 'ICSNP', 'gee', 'ivpack', 'saws', 'rmarkdown',
  'geepack', 'covr', 'mvtnorm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'mvtnorm', 'subplex', 'deSolve', 'digest', 'Rcpp', 'coda',
  'ncbit', 'colorspace', 'phytools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'rvest', 'dplyr', 'pheatmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'survAUC', 'pcaPP', 'Hmisc', 'quantreg', 'reshape2', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'bindata', 'nleqslv', 'pracma', 'speedglm', 'rje',
  'geepack'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'signal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown', 'readr'

VignetteBuilder package required for checking but not installed: 'knitr'
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Running examples in 'gemma2-Ex.R' failed
The error most likely occurred in:

> ### Name: calc_XHiY
> ### Title: Calculate XHiY
> ### Aliases: calc_XHiY
> 
> ### ** Examples
> 
> readr::read_tsv(system.file("extdata",
+ "mouse100.pheno.txt",
+ package = "gemma2"),
+ col_names = FALSE) -> pheno
Error in loadNamespace(x) : there is no package called 'readr'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'msm', 'plyr', 'data.table'

Package suggested but not available for checking: 'muhaz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'igraph', 'meta', 'plyr', 'rjags', 'truncnorm', 'Rglpk',
  'forcats'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'clinfun'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'raster', 'gdistance', 'sp', 'stringr', 'BH'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'testthat', 'rmarkdown', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'minpack.lm', 'plyr', 'pracma', 'tidyr',
  'naturalsort', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'oompaBase', 'ClassDiscovery'

Packages suggested but not available for checking: 'Biobase', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
plot.rbga: no visible global function definition for 'par'
plot.rbga: no visible global function definition for 'hist'
plot.rbga: no visible global function definition for 'lines'
rbga: no visible global function definition for 'runif'
rbga: no visible global function definition for 'dnorm'
rbga.bin: no visible global function definition for 'dnorm'
rbga.bin: no visible global function definition for 'runif'
Undefined global functions or variables:
  dnorm hist lines par runif
Consider adding
  importFrom("graphics", "hist", "lines", "par")
  importFrom("stats", "dnorm", "runif")
to your NAMESPACE file.
Packages required but not available: 'Kendall', 'fitdistrplus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RColorBrewer', 'ape', 'ggnetwork', 'ggplot2', 'ggraph', 'igraph',
  'network', 'phangorn', 'stringdist', 'visNetwork', 'reshape2',
  'S4Vectors', 'shiny', 'ggseqlogo', 'ggtree', 'dplyr', 'VennDiagram',
  'futile.logger', 'future', 'future.apply', 'ShortRead', 'Biostrings'

Packages suggested but not available for checking:
  'BiocManager', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'poibin'
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'lars', 'glmnet', 'plus', 'C50', 'randomForest', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
genmvnorm: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
Packages required but not available:
  'dplyr', 'jsonlite', 'httr', 'magrittr', 'purrr', 'tibble'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'binom'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'httr', 'jsonlite', 'remotes'

Packages suggested but not available for checking:
  'genderdata', 'ggplot2', 'knitr', 'testthat', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GENEAread', 'changepoint', 'signal'

Packages suggested but not available for checking:
  'waveslim', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bitops', 'mmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'rgl', 'misc3d', 'GENEAread'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'G1DBN', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'longitudinal', 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BiocManager', 'xml2', 'Biobase', 'annotate', 'GEOquery', 'markdown',
  'R.utils'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
t1p1: no visible global function definition for 'var'
t1p1: no visible global function definition for 'pt'
t1p2: no visible global function definition for 'pt'
Undefined global functions or variables:
  pt var
Consider adding
  importFrom("stats", "pt", "var")
to your NAMESPACE file.
Packages required but not available:
  'rentrez', 'stringr', 'dplyr', 'httr', 'curl'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clusterProfiler', 'dplyr', 'ggplot2', 'stringr', 'stringi', 'tidyr',
  'tibble', 'VennDiagram', 'rlang'

Packages suggested but not available for checking:
  'BiocManager', 'cowplot', 'DOSE', 'data.table', 'easyPubMed',
  'fgsea', 'futile.logger', 'ggplotify', 'ggsci', 'ggupset', 'ggrepel',
  'magrittr', 'msigdbr', 'openxlsx', 'RColorBrewer', 'rappdirs',
  'rentrez', 'scales', 'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'plotrix'
load.genelist: no visible global function definition for 'read.delim'
Undefined global functions or variables:
  read.delim
Consider adding
  importFrom("utils", "read.delim")
to your NAMESPACE file.
Package required but not available: 'stringr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'longitudinal', 'fdrtool'

Packages suggested but not available for checking: 'graph', 'Rgraphviz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'Rcpp', 'stringr', 'RcppProgress'

Packages suggested but not available for checking: 'testthat', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'np', 'xtable', 'meboot', 'psych'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'reshape'

Packages suggested but not available for checking: 'mlogit', 'ordinal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'CVST', 'kernlab', 'xgboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DistributionUtils'

Packages suggested but not available for checking:
  'VarianceGamma', 'actuar', 'SkewHyperbolic', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'DataVisualizations', 'rgl', 'png', 'reshape2', 'fields',
  'ABCanalysis', 'plotly', 'deldir', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'mlr3', 'mlr3learners', 'sandwich', 'lmtest',
  'splitstackshape'

Packages suggested but not available for checking:
  'glmnet', 'ranger', 'e1071', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'covr', 'pkgload', 'testthat', 'tibble', 'withr'
Packages unavailable to check Rd xrefs: 'tibble', 'tune'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package in Depends field not imported from: 'parallel'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Packages required but not available:
  'corpus', 'DT', 'gsl', 'gtools', 'hellno', 'htmltools',
  'htmlwidgets', 'lubridate', 'matrixStats', 'mvtnorm', 'Rcpp',
  'shiny', 'shinyjs'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shinytest', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'dplyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GGEBiplots', 'ggforce', 'ggplot2', 'scales', 'pcaMethods', 'rrcov',
  'dplyr', 'bcv', 'missMDA', 'calibrate', 'reshape2', 'matrixStats',
  'tidyr', 'prettydoc'

Packages suggested but not available for checking:
  'agridat', 'spelling', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'combinat', 'gdata', 'gtools', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'exactextractr', 'sp', 'spdep', 'raster', 'rgeos', 'sf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'sn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'foreach', 'actuar', 'EnvStats', 'extraDistr',
  'ggplot2', 'matrixcalc', 'reshape2', 'rmutil', 'ssdtools', 'VaRES',
  'VGAM'

Packages suggested but not available for checking:
  'gamlss.dist', 'GeneralizedHyperbolic', 'gld', 'GLDEX', 'sgt',
  'skewt', 'sn', 'stabledist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'mlpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'genieclust', 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'readr', 'tibble', 'dplyr', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'BEDMatrix', 'snpStats', 'lobstr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'rvest', 'stringr', 'tidyr', 'purrr', 'tibble', 'tidytext',
  'reshape2', 'rlang', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'dplyr', 'httr', 'purrr', 'rvest', 'stringr', 'tibble',
  'xml2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'KernSmooth'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
KernSec: no visible global function definition for 'na.omit'
KernSur: no visible global function definition for 'na.fail'
KernSur: no visible global function definition for 'na.omit'
bandwidthselect: no visible global function definition for 'na.omit'
bandwidthselect: no visible global function definition for 'dpik'
correlationselect: no visible global function definition for 'cor'
nearest: no visible global function definition for 'na.fail'
nearest: no visible global function definition for 'na.omit'
per: no visible global function definition for 'na.fail'
Undefined global functions or variables:
  cor dpik na.fail na.omit
Consider adding
  importFrom("stats", "cor", "na.fail", "na.omit")
to your NAMESPACE file.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'kinship2', 'bootstrap', 'quadprog', 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'foreach', 'distr', 'manipulate', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'alabama', 'fastDummies', 'Hmisc', 'matrixcalc', 'maxLik'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magic'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'S4Vectors', 'BiocGenerics', 'GenomicRanges', 'IRanges', 'R.utils',
  'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'leaflet', 'shiny', 'shinyjs', 'knitr', 'DT', 'shinycssloaders',
  'purrr', 'dplyr', 'magrittr', 'tidyr', 'ggplot2', 'tibble',
  'forcats', 'readr', 'rmarkdown', 'rio', 'maps', 'shinyWidgets',
  'rlang'

Package suggested but not available for checking: 'tidyverse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'qvalue', 'robust', 'SNPRelate', 'gdsfmt'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggridges', 'hierfstat', 'Rcpp', 'RcppParallel', 'rlang',
  'stringr', 'tibble', 'vcfR', 'RcppArmadillo'

Packages suggested but not available for checking:
  'dplyr', 'junctions', 'knitr', 'magrittr', 'rmarkdown', 'testit',
  'testthat', 'pbapply'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'magrittr', 'reshape'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'emoa', 'scatterplot3d', 'qtl', 'SOMbrero', 'kohonen',
  'plotly', 'dplyr', 'magrittr', 'LowRankQP', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'reactome.db', 'AnnotationDbi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'snpStats'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gMWT', 'Rcpp', 'data.table', 'GenomicTools.fileHandler', 'circlize',
  'stringr', 'snpStats', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ade4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SKAT', 'seqminer', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reshape2', 'plyr', 'doBy', 'zoo', 'colorspace'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'qtl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'diagram', 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'nleqslv'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'car'

Packages suggested but not available for checking: 'rgl', 'bestglm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdpack', 'mvtnorm', 'tmvtnorm', 'stringr'

Packages suggested but not available for checking:
  'igraph', 'zoo', 'knitr', 'rmarkdown', 'cubature'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pracma', 'minpack.lm', 'nlsr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'mvmesh', 'geometry', 'SphericalCubature', 'rgl',
  'SimplicialCubature'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pspline'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'sp', 'optimx'

Package suggested but not available for checking: 'geoR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'stringr', 'magrittr', 'tibble', 'threewords'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'spdep', 'reldist', 'dplyr', 'fclust', 'fmsb',
  'future.apply', 'progressr', 'reshape2', 'sp', 'rgeos', 'shiny',
  'leaflet', 'plotly', 'Rdpack', 'matrixStats', 'raster', 'rgdal',
  'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown', 'maptools', 'future', 'ppclust',
  'ClustGeo', 'car', 'rgl', 'ggpubr', 'RColorBrewer', 'kableExtra',
  'viridis', 'testthat', 'sf', 'bslib', 'shinyWidgets', 'shinyhelper',
  'tmap', 'waiter'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'sf'
Package required but not available: 'terra'

Packages suggested but not available for checking: 'jsonlite', 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
PAEA : <anonymous>: no visible global function definition for
  'integrate'
PAEAAnalysis: no visible global function definition for
  'txtProgressBar'
PAEAAnalysis : <anonymous>: no visible global function definition for
  'setTxtProgressBar'
PAEAAnalysis: no visible global function definition for 'par'
PAEAAnalysis: no visible global function definition for 'barplot'
chdirSig: no visible global function definition for 'prcomp'
chdirSig: no visible global function definition for 'rchisq'
chdirSig: no visible global function definition for 'txtProgressBar'
chdirSig : <anonymous> : <anonymous>: no visible global function
  definition for 'setTxtProgressBar'
chdirplots : <anonymous>: no visible global function definition for
  'par'
chdirplots : <anonymous>: no visible global function definition for
  'arrows'
chdirplots : <anonymous>: no visible global function definition for
  'barplot'
multigmtPAEAAnalysis: no visible global function definition for
  'txtProgressBar'
multigmtPAEAAnalysis : <anonymous>: no visible global function
  definition for 'setTxtProgressBar'
multigmtPAEAAnalysis : <anonymous>: no visible global function
  definition for 'data'
multigmtPAEAAnalysis : <anonymous>: no visible global function
  definition for 'write.table'
Undefined global functions or variables:
  arrows barplot data integrate par prcomp rchisq setTxtProgressBar
  txtProgressBar write.table
Consider adding
  importFrom("graphics", "arrows", "barplot", "par")
  importFrom("stats", "integrate", "prcomp", "rchisq")
  importFrom("utils", "data", "setTxtProgressBar", "txtProgressBar",
             "write.table")
to your NAMESPACE file.
Packages required but not available:
  'sp', 'readr', 'dplyr', 'rgdal', 'magrittr', 'tibble', 'leafpop',
  'htmltools', 'leaflet', 'profvis', 'mapview'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'rgeos', 'rgdal', 'maptools'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'readr', 'tibble', 'tidyr', 'tidyselect', 'generics', 'sf',
  'magrittr', 'rlang', 'pander'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'phonTools', 'pracma', 'raster', 'rgdal', 'tibble', 'e1071',
  'sp', 'rgeos', 'snow', 'sf', 'zoo', 'Rcpp', 'landscapemetrics',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'rmarkdown', 'rasterVis', 'mapdata',
  'maptools', 'maps', 'tidyverse', 'tidyr', 'ggmap', 'corrplot',
  'cowplot', 'gridExtra', 'factoextra', 'knitr', 'rfigshare'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'leaflet', 'shiny', 'shinydashboard'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zipfR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'fields'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gtable', 'rnaturalearth', 'sp', 'sf', 'ggrepel', 'imguR',
  'gridExtra', 'geogrid'

Packages suggested but not available for checking:
  'testthat', 'covr', 'lintr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'dplyr', 'httpcache', 'httr', 'purrr', 'rlang', 'sf', 'xml2',
  'yaml'

Packages suggested but not available for checking:
  'covr', 'geofacet', 'ggplot2', 'ggrepel', 'htmltools', 'httptest',
  'janitor', 'knitr', 'leaflet', 'patchwork', 'pxweb', 'readr',
  'rmarkdown', 'testthat', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'data.tree', 'FisPro', 'Rdpack', 'foreach', 'R6', 'Rcpp',
  'rgeos', 'nnls', 'BH'

Packages suggested but not available for checking:
  'testthat', 'rlang', 'knitr', 'rmarkdown', 'RColorBrewer', 'rgdal',
  'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'magrittr', 'orthopolynom', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mboost', 'grpreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'sf', 'rgeos', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'rgdal', 'sf', 'sp', 'testthat'
Packages unavailable to check Rd xrefs: 'sp', 'sf'
Running examples in 'geohashTools-Ex.R' failed
The error most likely occurred in:

> ### Name: gis_tools
> ### Title: Helpers for interfacing geohashes with sp/sf objects
> ### Aliases: gh_to_sp gh_to_spdf gh_to_spdf.default gh_to_spdf.data.frame
> ###   gh_to_sf gh_covering
> 
> ### ** Examples
> 
>   # get the neighborhood of this geohash in downtown Apia as an sp object
>   downtown = '2jtc5x'
>   apia_nbhd = unlist(gh_neighbors(downtown))
>   apia_sp = gh_to_sp(apia_nbhd)
Error in check_suggested("sp") : 
  This function requires an installation of sp; install.packages('sp') to proceed.
Calls: gh_to_sp -> check_suggested
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'sp', 'sf', 'geojsonsf', 'rgeos', 'crul', 'maptools', 'jsonlite',
  'magrittr', 'readr', 'V8', 'geojson', 'jqr'

Packages suggested but not available for checking:
  'gistr', 'testthat', 'leaflet', 'maps', 'DBI', 'RPostgres'

Package which this enhances but not available for checking: 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'jsonlite', 'jsonvalidate', 'V8'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'jsonlite', 'protolite', 'jqr', 'magrittr', 'lazyeval'

Packages suggested but not available for checking:
  'geojsonlint', 'tibble', 'testthat', 'knitr', 'rmarkdown', 'sf',
  'stringi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'R6', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'geometries', 'jsonify', 'rapidjsonr', 'sfheaders'

Packages suggested but not available for checking:
  'covr', 'jsonify', 'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'whisker', 'xml2', 'httr', 'curl', 'sp', 'progress'

Packages suggested but not available for checking:
  'testthat', 'xtable', 'knitr', 'rmarkdown', 'ggmap', 'dplyr',
  'rasterVis', 'ggplot2', 'rgdal', 'maps'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'sf', 'stringr', 'tibble', 'tidyr', 'tigris',
  'ggplot2', 'readr', 'dataverse', 'censable', 'Rcpp', 'geos', 'cli'

Packages suggested but not available for checking:
  'redist', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'GEOmap'
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'RPMG', 'splancs', 'fields', 'MBA'

Packages suggested but not available for checking:
  'geomapdata', 'maps', 'RFOC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forecast', 'ForecastCombinations', 'ggplot2', 'mtsdi', 'psych'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'inlmisc', 'raster', 'spdep', 'sp', 'geosphere', 'lubridate',
  'ggplot2', 'gridExtra', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'XML', 'httr', 'jsonlite', 'keyring'

Packages suggested but not available for checking:
  'sf', 'ncdf4', 'EML', 'emld', 'units', 'testthat', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'crayon', 'dplyr', 'rlang', 'purrr', 'tibble', 'rgdal',
  'deldir', 'sf', 'sp', 'raster', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'bookdown', 'magrittr', 'covr', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magic', 'Rcpp', 'lpSolve', 'linprog', 'RcppProgress'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'rgl', 'R.matlab', 'tripack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'R6', 'geojsonR', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RRPP', 'rgl', 'jpeg', 'ape', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'scales', 'systemfonts', 'rlang', 'textshaping'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'ragg', 'roxygen2', 'sf',
  'xml2', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geometa', 'keyring', 'R6', 'openssl', 'httr', 'XML'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.linnet', 'spatstat.geom', 'spatstat.core', 'igraph',
  'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'spatstat', 'spatstat.data'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geosphere', 'igraph', 'rgdal', 'sp', 'sf'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'maps', 'mapview', 'rmarkdown', 'roxygen2',
  'spData', 'testthat', 'tmaptools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RPMG', 'RSEIS', 'RFOC', 'GEOmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'proj4', 'raster', 'moments', 'velociraptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'snowfall', 'sp', 'abind', 'constrainedKriging', 'fields', 'lmtest',
  'nleqslv', 'quantreg', 'RandomFields', 'robustbase'

Packages suggested but not available for checking: 'gstat', 'multcomp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'splancs', 'RandomFields'

Package suggested but not available for checking: 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'openssl', 'httr', 'XML', 'keyring'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
geoscaleBox: no visible global function definition for 'boxplot'
geoscaleBox: no visible global function definition for 'par'
geoscaleBox: no visible global function definition for 'text'
geoscaleBox: no visible global function definition for 'segments'
geoscaleBox: no visible global function definition for 'rect'
geoscaleBox: no visible global function definition for 'rgb'
geoscaleBox: no visible global function definition for 'polygon'
geoscaleBox: no visible global function definition for 'points'
geoscaleBox: no visible global function definition for 'axis'
geoscalePlot: no visible global function definition for 'par'
geoscalePlot: no visible global function definition for 'text'
geoscalePlot: no visible global function definition for 'segments'
geoscalePlot: no visible global function definition for 'rect'
geoscalePlot: no visible global function definition for 'rgb'
geoscalePlot: no visible global function definition for 'points'
geoscalePlot: no visible global function definition for 'axis'
Undefined global functions or variables:
  axis boxplot par points polygon rect rgb segments text
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "axis", "boxplot", "par", "points", "polygon",
             "rect", "segments", "text")
to your NAMESPACE file.
Packages suggested but not available for checking: 'sp', 'mapview'
'LazyData' is specified without a 'data' directory
Running examples in 'geosed-Ex.R' failed
The error most likely occurred in:

> ### Name: geo_midpoint
> ### Title: Point of Equidistance to Up to Three Longitude, Latitude Points
> ### Aliases: geo_midpoint
> ### Keywords: circle disk enclosing geo latitude longitude sed smallest
> 
> ### ** Examples
> 
> 
> # Load required packages
> require(mapview)
Loading required package: mapview
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'mapview'
> require(sp)
Loading required package: sp
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'sp'
> 
> # Create sample geo dataset
> sample_coord <-
+    matrix(
+         c(
+             sample(327131680:419648450, 3) / 10000000,
+             sample(-1147301410:-1241938690, 3) / 10000000
+         ),
+         ncol = 2
+     )
> 
> # Generate circumcenter and radius
> gmp <- geo_midpoint(sample_coord)
> 
> # Find distance to circumcenter
> radius <- geo_point_dist(rbind(sample_coord[1, ], gmp))
> 
> # Create 80 sided polygon based on gmp's center and radius
> gmp_poly <- geo_surround_poly(gmp, radius, 80)
> 
> # Join all the points into a single matrix
> bound_poly <- rbind(sample_coord, as.vector(gmp), gmp_poly)
> 
> # Create SpacialPoints object and pass to mapview for visualization
> mapview(
+     SpatialPoints(
+         bound_poly[,c(2, 1)],
+         proj4string = CRS("+proj=longlat +datum=WGS84")
+     )
+ )
Error in mapview(SpatialPoints(bound_poly[, c(2, 1)], proj4string = CRS("+proj=longlat +datum=WGS84"))) : 
  could not find function "mapview"
Execution halted
Packages required but not available: 'sparklyr', 'dplyr', 'dbplyr'

Packages suggested but not available for checking: 'testthat', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Package suggested but not available for checking: 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FD', 'StatMatch', 'fields', 'sp', 'minqa', 'limSolve', 'gsl',
  'geospt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gstat', 'genalg', 'sp', 'minqa', 'limSolve', 'fields', 'gsl',
  'plyr', 'TeachingDemos', 'sgeostat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'libgeos', 'wk'

Packages suggested but not available for checking:
  'testthat', 'vctrs', 'sf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spdep', 'sf', 'ggplot2', 'truncnorm', 'signs', 'gridExtra', 'Rcpp',
  'RcppParallel', 'rstan', 'rstantools', 'BH', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'bayesplot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'magrittr', 'plyr', 'cqn'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DESeq2', 'S4Vectors', 'ChAMP', 'impute',
  'tidyr', 'clusterProfiler', 'org.Hs.eg.db', 'edgeR', 'limma',
  'quantreg'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'geoR', 'tidyr', 'dplyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'stringr', 'zoo', 'rgdal'

Package suggested but not available for checking: 'soilwater'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ff', 'raster', 'foreach', 'sp', 'doParallel', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'RCurl', 'curl', 'dplyr', 'glue', 'stringr', 'ggplot2',
  'ggthemes', 'ggspatial', 'magrittr', 'fs', 'sf', 'assertthat',
  'viridis', 'raster', 'rgdal', 'sp'

Packages suggested but not available for checking:
  'rmarkdown', 'covr', 'learnr', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'tidyr', 'readr', 'tibble', 'purrr', 'stringr',
  'raster', 'chron', 'sp', 'sf', 'rgeos', 'glue', 'png', 'abind',
  'rgl', 'slippymath', 'curl', 'progress', 'rlang', 'ggplot2', 'rgdal'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'beepr', 'cartography', 'dplyr', 'DT', 'GWmodel', 'raster', 'readxl',
  'shiny', 'shinyalert', 'shinyBS', 'shinybusy', 'shinydashboard',
  'shinyjs', 'shinyWidgets', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rgdal', 'rmarkdown', 'spdep'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bitops'

Packages suggested but not available for checking:
  'tourr', 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bitops'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DescTools', 'mvtnorm', 'openxlsx', 'pbapply', 'truncnorm'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'mice', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'CGE', 'data.tree', 'DiagrammeR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'agricolae', 'ggplot2', 'dplyr', 'tidyr', 'tibble', 'purrr',
  'DT'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gsheet', 'inti'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'data.table', 'ggplot2', 'ggrepel', 'mathjaxr',
  'minpack.lm', 'plyr', 'Rdpack'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'reshape2', 'pander', 'XML', 'httr', 'RCurl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'askpass', 'credentials', 'openssl', 'rstudioapi', 'sys', 'zip'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'kinship2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'rio', 'RSelenium', 'stringr', 'dplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'bigmemory', 'RcppEigen', 'RcppThread', 'BH'

Packages suggested but not available for checking:
  'glmnet', 'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rlang'

Packages suggested but not available for checking:
  'magrittr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'shiny', 'shinythemes'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mclust', 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DataCombine', 'tidyr', 'tibble', 'tidyselect', 'geeM', 'rsample',
  'magrittr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

Packages suggested but not available for checking: 'jsonlite', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'RCurl', 'lubridate', 'readr', 'curl', 'dplyr', 'future',
  'furrr', 'jsonlite', 'memoise', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'xml2', 'dplyr', 'readr', 'lubridate', 'magrittr',
  'purrr', 'memoise', 'rvest', 'tidyr', 'RCurl', 'shiny', 'writexl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'XML', 'dplyr', 'readr', 'reshape2', 'tibble', 'xlsx',
  'curl', 'lubridate', 'crayon'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'formulaic', 'microbenchmark'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'testthat', 'covr', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'xml2', 'dplyr', 'readr', 'lubridate', 'magrittr',
  'purrr', 'rvest', 'XML'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readr', 'crul', 'xml2', 'data.table', 'tibble', 'rappdirs'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'knitr', 'raster'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'XML', 'dplyr', 'readr', 'stringdist', 'curl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'dplyr', 'tibble', 'pipeR', 'rlang', 'janitor', 'purrr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'EcoHydRology', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'gtable', 'metafor', 'psych', 'stargazer'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'covr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjson', 'GlobalOptions', 'crayon'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running 'run-all.R'
Running the tests in 'tests/run-all.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Package required but not available: 'rstudioapi'

Package suggested but not available for checking: 'argon2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'cli'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'memoise', 'dplyr', 'purrr', 'readr', 'scales', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gridExtra', 'viridisLite'

Packages suggested but not available for checking:
  'gstat', 'sp', 'fda', 'fda.usc', 'mvtnorm', 'patchwork',
  'spatstat.geom', 'spatstat.core', 'spatstat.linnet', 'spatstat',
  'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'party'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'metafor', 'dplyr', 'plotrix', 'colorspace', 'RColorBrewer',
  'colorRamps'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'covr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

Packages suggested but not available for checking:
  'lgarch', 'xtable', 'microbenchmark'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'readxl', 'curl', 'bizdays', 'tidyr', 'rvest', 'xml2',
  'dplyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RLRsim'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Biobase', 'multtest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'jpeg', 'png'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'lubridate', 'readr'

Packages suggested but not available for checking:
  'curl', 'dplyr', 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'pcaPP', 'mboost'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'rgdal', 'geosphere', 'RCurl', 'rgeos', 'plyr', 'ggplot2',
  'sp', 'stringr', 'animation', 'rasterVis'

Package suggested but not available for checking: 'sf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'magic', 'plotrix', 'shiny', 'shinyjs', 'shinyWidgets',
  'shinythemes', 'tippy'

Packages suggested but not available for checking:
  'RGtk2', 'knitr', 'rmarkdown', 'HSAUR'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gridExtra', 'shiny', 'shinyjs', 'shinythemes', 'survminer', 'tippy',
  'magic', 'plyr'

Package suggested but not available for checking: 'condSURV'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'data.table', 'TeachingSampling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rvest', 'xml2', 'jsonlite', 'httr', 'stringi', 'V8', 'data.table',
  'tidyr', 'scatterpie', 'ggplot2', 'ggrepel', 'circlize',
  'googlesheets4', 'gsheet'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'cmprsk', 'compound.Cox', 'joint.Cox'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'Rcpp', 'doParallel', 'foreach', 'BH', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'lazyeval', 'spatstat', 'spatstat.geom', 'forcats', 'rgr',
  'RcppEigen'

Packages suggested but not available for checking:
  'kde1d', 'knitr', 'rmarkdown', 'lmerTest', 'emmeans', 'testthat',
  'AOV1R', 'GGally', 'car'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rcdd', 'lazyeval', 'spatstat', 'spatstat.geom', 'EigenR', 'Rcpp',
  'RcppArmadillo', 'roptim', 'BH'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SIS', 'lazyeval', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'doSNOW'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'shiny', 'crul', 'jsonlite', 'glue', 'crayon'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'vcr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'ggpubr', 'progress', 'stringr',
  'truncnorm', 'truncreg'

Package suggested but not available for checking: 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'data.table', 'testthat', 'rmarkdown',
  'ggplot2', 'penaltyLearning'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggimage', 'ggplot2', 'magrittr', 'rlang'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat', 'vdiffr', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'lazyeval', 'rlang', 'tidyselect'

Packages suggested but not available for checking:
  'alluvial', 'testthat', 'knitr', 'rmarkdown', 'babynames',
  'sessioninfo', 'ggrepel', 'shiny', 'htmltools', 'sp', 'ggfittext',
  'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'forcats', 'gtable', 'lifecycle', 'plyr',
  'progress', 'RColorBrewer', 'reshape', 'rlang', 'scales', 'tidyr'

Packages suggested but not available for checking:
  'broom', 'broom.helpers', 'chemometrics', 'geosphere', 'ggforce',
  'Hmisc', 'igraph', 'intergraph', 'labelled', 'maps', 'mapproj',
  'network', 'scagnostics', 'sna', 'rmarkdown', 'roxygen2', 'testthat',
  'crosstalk', 'knitr', 'spelling', 'emmeans'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'RColorBrewer', 'proj4', 'scales', 'gtable',
  'ash', 'maps', 'extrafont', 'tibble', 'plotly'

Packages suggested but not available for checking:
  'testthat', 'gridExtra', 'knitr', 'rmarkdown', 'ggthemes', 'reshape2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'flexsurv'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'stringi', 'tweenr', 'rlang', 'glue', 'progress', 'plyr',
  'scales'

Packages suggested but not available for checking:
  'magick', 'svglite', 'knitr', 'rmarkdown', 'testthat', 'base64enc',
  'htmltools', 'covr', 'transformr', 'av', 'gifski', 'ragg'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'purrr', 'tidyverse', 'glue', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'purrr', 'rlang', 'scales',
  'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'spelling', 'covr', 'broom',
  'corrr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'beeswarm', 'vipor'

Package suggested but not available for checking: 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggfun', 'ggplot2', 'ggplotify', 'aplot', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'prettydoc', 'rmarkdown', 'patchwork', 'pillar'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Packages suggested but not available for checking:
  'BiocStyle', 'knitr', 'rmarkdown', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'purrr', 'readr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'purrr', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'changepoint', 'changepoint.np', 'dplyr', 'ecp', 'ggplot2', 'Rdpack',
  'tibble'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'gstat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'colorspace', 'dplyr', 'lifecycle', 'magrittr',
  'patchwork', 'rlang'

Packages suggested but not available for checking:
  'gapminder', 'knitr', 'lintr', 'rmarkdown', 'scales', 'spelling',
  'tibble', 'tidyr', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'rlang', 'magrittr', 'readr', 'egg',
  'vctrs', 'tibble', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'rly'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'futile.logger', 'dplyr', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking: 'knitr', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dagitty', 'dplyr', 'forcats', 'ggplot2', 'ggraph', 'ggrepel',
  'igraph', 'magrittr', 'pillar', 'purrr', 'stringr', 'tibble',
  'tidygraph'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'do', 'set', 'rms', 'base.rms'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'RJDemetra', 'ggrepel', 'gridExtra'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'tree', 'testthat', 'knitr', 'scales', 'spelling', 'rmarkdown',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'isoband', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyselect', 'dplyr', 'ggplot2', 'rlang', 'scales', 'HDInterval',
  'tibble', 'vctrs', 'withr', 'distributional', 'numDeriv', 'glue'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'vdiffr', 'svglite', 'broom', 'modelr',
  'cowplot', 'patchwork', 'covr', 'gdtools', 'rmarkdown', 'png', 'fda',
  'forcats', 'purrr', 'tidyr', 'beeswarm', 'posterior', 'pkgdown',
  'palmerpenguins'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'coda', 'ggplot2', 'matrixStats', 'data.table',
  'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'ggplot2', 'ggnewscale'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'dplyr', 'scales', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'clipr', 'labelled', 'patchwork',
  'vdiffr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ggforce', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'plyr', 'tidyr', 'purrr', 'rlang', 'scales',
  'rstudioapi', 'shiny', 'miniUI', 'shinyBS', 'colourpicker',
  'shinyAce', 'magrittr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'insight', 'sjlabelled'

Packages suggested but not available for checking:
  'AER', 'aod', 'betareg', 'brms', 'clubSandwich', 'effects',
  'emmeans', 'gam', 'gamlss', 'gamm4', 'gee', 'geepack', 'ggplot2',
  'GLMMadaptive', 'glmmTMB', 'gridExtra', 'haven', 'httr', 'knitr',
  'lme4', 'logistf', 'magrittr', 'margins', 'mice', 'MCMCglmm',
  'ordinal', 'parameters', 'prediction', 'pscl', 'quantreg',
  'rmarkdown', 'rms', 'robustbase', 'rstanarm', 'rstantools',
  'sandwich', 'see', 'sjstats', 'sjmisc', 'survey', 'testthat', 'VGAM'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'igraph', 'plyr', 'reshape2', 'plotly', 'tibble'

Packages suggested but not available for checking:
  'stringr', 'knitr', 'roxygen2', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nipals', 'reshape2'

Packages suggested but not available for checking:
  'agridat', 'knitr', 'rgl', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'tidyverse', 'RSDA', 'rlang', 'R6', 'dplyr', 'tidyr',
  'gridExtra', 'gtools', 'stringr', 'prodlim', 'ggforce', 'ggpubr',
  'ggthemes', 'tibble', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'behavr', 'data.table', 'stringr', 'scales', 'labeling',
  'rlang'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'zeitgebr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'colourpicker', 'ggplot2', 'gtable', 'miniUI', 'scales', 'shiny',
  'shinyjs', 'R6'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rstudioapi', 'testthat', 'vdiffr',
  'fontquiver', 'shinydisconnect', 'svglite', 'withr', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'FactoMineR', 'ggiraph', 'ggplot2', 'widgetframe',
  'dplyr', 'forcats', 'purrr', 'rlang', 'stringi', 'stringr', 'tibble',
  'tidyr', 'tidyselect', 'vctrs', 'ggrepel', 'gridExtra', 'tabxplor',
  'htmlwidgets', 'kableExtra'

Package suggested but not available for checking: 'finalfit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'colorspace', 'dplyr', 'rstan'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyr', 'magrittr', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringi', 'ggplot2', 'shades'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'vdiffr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'magrittr', 'dplyr', 'rlang', 'RColorBrewer'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'maps', 'ggrepel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'scales', 'tweenr', 'gtable', 'rlang', 'polyclip',
  'tidyselect', 'withr', 'RcppEigen'

Packages suggested but not available for checking:
  'sessioninfo', 'concaveman', 'deldir', 'reshape2', 'units', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggstance', 'scales', 'ggridges', 'mosaicCore', 'rlang',
  'magrittr', 'tibble', 'stringr', 'ggforce', 'labelled'

Packages suggested but not available for checking:
  'tidyr', 'mosaicData', 'dplyr', 'mosaic', 'palmerpenguins',
  'testthat', 'vdiffr', 'knitr', 'rmarkdown', 'lubridate', 'broom',
  'maps', 'maptools', 'rgeos', 'sf', 'purrr', 'ggthemes', 'covr',
  'ggplot2movies'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'gridExtra', 'scales', 'stringr',
  'tibble'

Packages suggested but not available for checking:
  'testthat', 'changepoint', 'dlm', 'fGarch', 'forecast', 'ggrepel',
  'glmnet', 'KFAS', 'knitr', 'lintr', 'mapdata', 'markdown', 'MSwM',
  'raster', 'ROCR', 'sp', 'strucchange', 'timeSeries', 'tseries',
  'vars', 'xts', 'zoo', 'lfda'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'rlang'

Packages suggested but not available for checking:
  'ggplotify', 'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magick', 'ragg', 'ggplot2', 'gtable', 'rlang'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'farver'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'cowplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'cowplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ggfittext', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'vdiffr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'animation'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'knitr', 'mapproj', 'maps', 'rmarkdown', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'vwline'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gtable', 'scales', 'vctrs', 'rlang'

Packages suggested but not available for checking:
  'covr', 'digest', 'fitdistrplus', 'ggdendro', 'vdiffr', 'knitr',
  'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ggrepel'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gtable'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'hdrcde', 'ggplot2', 'scales', 'farver', 'tibble', 'digest'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'testthat', 'vdiffr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'aplot', 'factoextra', 'tibble', 'ggpubr', 'tidyr',
  'patchwork'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'ggrepel', 'lifecycle', 'purrr', 'rlang',
  'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'sf', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'magrittr', 'tibble', 'lifecycle', 'Rcpp',
  'rlang'

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'profvis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'glue', 'magrittr', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'ggh4x', 'ggthemes', 'knitr', 'patchwork', 'rmarkdown', 'testthat',
  'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggfun', 'ggplotify', 'jsonlite', 'magick', 'scales',
  'tibble'

Packages suggested but not available for checking:
  'ape', 'ggtree', 'gridGraphics', 'httr', 'rsvg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'jpeg', 'png', 'abind'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'rlang'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'rlang', 'stringr', 'magrittr', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'sf', 'pryr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ipaddress', 'dplyr', 'glue', 'Rcpp', 'rlang', 'tidyr',
  'vctrs'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggiraph', 'scales', 'reshape2', 'plyr', 'mycor', 'ppcor',
  'sjlabelled', 'sjmisc', 'stringr', 'tidyr', 'purrr', 'dplyr',
  'magrittr', 'RColorBrewer'

Packages suggested but not available for checking:
  'TH.data', 'ggforce', 'webshot', 'ztable', 'moonBook', 'maps',
  'gcookbook', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'htmlwidgets', 'htmltools', 'Rcpp', 'systemfonts',
  'purrr', 'rlang', 'uuid'

Packages suggested but not available for checking:
  'knitr', 'tinytest', 'rmarkdown', 'maps', 'hexbin', 'shiny', 'sf',
  'ggrepel', 'quantreg', 'xml2', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'Rcpp', 'foreach', 'doParallel', 'signal', 'zoo',
  'bitops', 'matlab', 'GENEAread', 'tuneR', 'unisensR', 'ineq',
  'read.gt3x', 'R.utils', 'activityCounts'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggridges', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'patchwork', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'ggplot2', 'magrittr', 'lazyeval', 'assertthat'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ineq'

Package suggested but not available for checking: 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'RgoogleMaps', 'png', 'plyr', 'rjson', 'jpeg', 'digest',
  'scales', 'dplyr', 'bitops', 'glue', 'httr', 'stringr', 'purrr',
  'magrittr', 'tibble', 'tidyr'

Packages suggested but not available for checking: 'hexbin', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat', 'vdiffr', 'tibble', 'tidyr',
  'dplyr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'tidyr', 'ggplot2', 'GGally'

Packages suggested but not available for checking:
  'coda', 'knitr', 'rmarkdown', 'ggthemes', 'gridExtra', 'Cairo',
  'extrafont'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/v70i09.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'mice', 'purrr', 'rlang', 'stringr',
  'tidyr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'plotly', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

Packages suggested but not available for checking:
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  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'reshape', 'GGally', 'ggplot2', 'glassoFast',
  'network', 'numDeriv', 'mathjaxr', 'pbapply', 'sna', 'RcppArmadillo'

Packages suggested but not available for checking:
  'car', 'corpcor', 'corrplot', 'dplyr', 'NetworkToolbox',
  'NetworkComparisonTest', 'nlshrink', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdpack', 'bestglm', 'GGally', 'network', 'sna', 'poibin',
  'doParallel', 'foreach', 'corpcor', 'psych', 'ggplot2', 'GGMncv'

Package suggested but not available for checking: 'qgraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'productplots', 'dplyr', 'plotly', 'purrr', 'rlang',
  'tidyr', 'ggrepel', 'scales'

Packages suggested but not available for checking:
  'gridExtra', 'knitr', 'NHANES', 'rmarkdown', 'patchwork'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyverse', 'dplyr', 'XML', 'magrittr', 'ggplot2', 'stringr',
  'ggtree', 'ape', 'aplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'graph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'dwlm'
Packages required but not available: 'mvtnorm', 'lars', 'gtools'

Packages suggested but not available for checking: 'network', 'glasso'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'ape'

Packages suggested but not available for checking:
  'RColorBrewer', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'png', 'stringr', 'markdown', 'magrittr', 'gridExtra', 'tibble',
  'testthat', 'knitr', 'rmarkdown', 'tidyverse', 'gtable', 'covr',
  'maps', 'nycflights13', 'ggplot2movies'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggrepel', 'network', 'igraph', 'sna'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'vdiffr', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'scales'

Package suggested but not available for checking: 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggspatial', 'sp', 'raster', 'sf', 'rgeos', 'stars',
  'smoothr', 'units', 'dplyr'

Packages suggested but not available for checking:
  'ggOceanMapsData', 'cowplot', 'knitr', 'rmarkdown', 'scales',
  'rgdal', 'ggnewscale'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'ggraph', 'igraph', 'spelling', 'testthat', 'vdiffr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'magrittr', 'dplyr', 'tidyr', 'purrr', 'ggplot2', 'ggforce',
  'gganimate'

Package suggested but not available for checking: 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'purrr', 'rlang', 'stringr',
  'tidytext'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'plyr'

Package suggested but not available for checking: 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'rlang'

Packages suggested but not available for checking:
  'tidyr', 'magrittr', 'knitr', 'testthat', 'rmarkdown', 'purrr',
  'ggrepel', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'partykit', 'gtable', 'checkmate', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'mlbench', 'AER', 'coin', 'vdiffr', 'knitr', 'rmarkdown',
  'pander', 'TH.data'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'glue', 'gridpattern', 'rlang', 'scales'

Packages suggested but not available for checking:
  'ambient', 'dplyr', 'gganimate', 'knitr', 'magick', 'mapproj',
  'maps', 'png', 'ragg', 'readr', 'rmarkdown', 'sf', 'testthat',
  'vdiffr'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'ragg', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'sticky', 'tidyselect', 'data.table'

Packages suggested but not available for checking:
  'covr', 'knitr', 'maps', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'glue', 'gtable', 'isoband', 'rlang', 'scales', 'tibble',
  'withr'

Packages suggested but not available for checking:
  'covr', 'ragg', 'dplyr', 'ggplot2movies', 'hexbin', 'Hmisc',
  'interp', 'knitr', 'mapproj', 'maps', 'maptools', 'multcomp',
  'munsell', 'profvis', 'quantreg', 'RColorBrewer', 'rgeos',
  'rmarkdown', 'sf', 'svglite', 'testthat', 'vdiffr', 'xml2'

Package which this enhances but not available for checking: 'sp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'miniUI', 'rstudioapi', 'shinyWidgets', 'shinyAce',
  'stringr', 'tidyverse', 'ggplot2', 'dplyr', 'magrittr', 'tibble',
  'scales', 'ggthemes', 'gcookbook', 'moonBook', 'editData'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plotly', 'shiny', 'ggplot2', 'stringr', 'readr', 'haven', 'readxl',
  'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridGraphics', 'yulab.utils'

Packages suggested but not available for checking:
  'aplot', 'colorspace', 'cowplot', 'ggimage', 'knitr', 'rmarkdown',
  'prettydoc', 'vcd'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'plotly', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'scales', 'hexbin', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggpp', 'ggplot2', 'scales', 'rlang', 'generics', 'polynom',
  'quantreg', 'lmodel2', 'splus2R', 'tibble', 'plyr', 'dplyr',
  'lubridate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggrepel', 'broom', 'broom.mixed', 'gginnards'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'yaml', 'R6', 'gtable', 'ggplot2', 'magrittr',
  'stringr', 'assertthat', 'GGally', 'zoo', 'knitr', 'rmarkdown',
  'tidyr', 'dplyr', 'purrr', 'readr', 'rlang', 'tibble', 'checkmate',
  'scales'

Packages suggested but not available for checking:
  'testthat', 'xtable', 'vdiffr', 'nlmixr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking: 'viridis', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'covr', 'testthat', 'rmarkdown', 'ragg', 'ggtext'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Package suggested but not available for checking: 'ggnewscale'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gtable', 'plyr', 'rlang', 'dplyr', 'tibble', 'glue'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'rlang', 'magrittr', 'glue', 'gridExtra', 'scales',
  'tibble', 'dplyr', 'xts', 'zoo', 'polynom', 'lubridate', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gginnards', 'ggrepel', 'magick'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'ggplot2', 'glue', 'gtable', 'rlang', 'scales', 'tibble'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggbeeswarm', 'ggnewscale', 'knitr', 'magrittr',
  'patchwork', 'rmarkdown', 'rstatix', 'tidyr', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggrepel', 'ggsci', 'tidyr', 'purrr', 'dplyr', 'cowplot',
  'ggsignif', 'scales', 'gridExtra', 'glue', 'polynom', 'rlang',
  'rstatix', 'tibble', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'RColorBrewer', 'gtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'data.table'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'gridExtra', 'knitr', 'rmarkdown', 'reshape2', 'plyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'scales', 'ggplot2', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'colourpicker', 'dplyr', 'DT', 'Formula', 'GGally', 'ggbeeswarm',
  'ggplot2', 'ggpmisc', 'ggrepel', 'ggstance', 'ggpubr', 'gridExtra',
  'Hmisc', 'markdown', 'plotly', 'quantreg', 'rlang', 'scales',
  'shiny', 'shinyjs', 'shinyjqui', 'stringr', 'survminer', 'tidyr',
  'table1', 'zoo', 'shinyFiles', 'RPostgres'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'dplyr', 'ggmap', 'maps', 'pkgdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'dplyr', 'ggforce', 'igraph', 'scales', 'digest',
  'gtable', 'ggrepel', 'viridis', 'rlang', 'tidygraph', 'graphlayouts',
  'withr'

Packages suggested but not available for checking:
  'network', 'knitr', 'rmarkdown', 'purrr', 'tibble', 'seriation',
  'deldir', 'gganimate', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'pacman', 'purrr', 'shiny'

Packages suggested but not available for checking: 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'mixtools', 'ape', 'bgmm', 'colorspace'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'Cairo', 'ggbeeswarm', 'png', 'ragg'

Packages suggested but not available for checking:
  'knitr', 'maps', 'rmarkdown', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Rcpp', 'rlang', 'scales'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'gridExtra', 'devtools',
  'prettydoc', 'ggbeeswarm', 'dplyr', 'magrittr', 'readr', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cowplot', 'ggplot2', 'plotly', 'qqplotr', 'stringr'

Packages suggested but not available for checking:
  'dplyr', 'forcats', 'knitr', 'lme4', 'lmerTest', 'randomForest',
  'rmarkdown', 'testthat', 'vdiffr', 'wesanderson'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gRbase', 'CVglasso', 'graph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'plyr', 'scales', 'withr'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'patchwork', 'ggplot2movies', 'forcats', 'knitr',
  'rmarkdown', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'egg', 'do', 'set', 'cutoff', 'rms', 'nomogramFormula',
  'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'doParallel', 'foreach'
Packages required but not available: 'scales', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gridExtra', 'reshape2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'seasonal', 'rlang', 'zoo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'plotly', 'magrittr', 'scales', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat', 'devtools', 'processx',
  'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'sf', 'vctrs'

Packages suggested but not available for checking:
  'knitr', 'here', 'rmarkdown', 'freesurfer', 'covr', 'vdiffr',
  'testthat', 'devtools', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales', 'rlang', 'glue'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gtable', 'rlang', 'scales', 'glue'

Packages suggested but not available for checking:
  'tidyr', 'dplyr', 'testthat', 'knitr', 'rmarkdown', 'vdiffr',
  'ggdendro', 'viridis'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'sf', 'png', 'maptools', 'ggmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'pkgdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggmap', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'tidyr', 'ggplot2', 'kohonen', 'assertthat',
  'data.table', 'entropy', 'tibble'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'ggplot2', 'rosm', 'abind', 'tibble', 'scales', 'tidyr',
  'rlang', 'glue'

Packages suggested but not available for checking:
  'prettymapr', 'knitr', 'rmarkdown', 'sp', 'rgdal', 'raster',
  'testthat', 'dplyr', 'withr', 'ggrepel', 'stars', 'covr', 'vdiffr',
  'lwgeom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'photobiology', 'ggplot2', 'photobiologyWavebands', 'scales',
  'ggrepel', 'dplyr', 'lubridate', 'tidyr', 'tibble'

Packages suggested but not available for checking:
  'rlang', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'plyr', 'rlang', 'withr'

Packages suggested but not available for checking:
  'covr', 'Hmisc', 'testthat', 'vdiffr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales', 'gridExtra'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'correlation', 'dplyr', 'ggplot2', 'ggrepel', 'ggsignif', 'glue',
  'insight', 'paletteer', 'parameters', 'patchwork', 'performance',
  'purrr', 'rlang', 'statsExpressions', 'tidyr', 'WRS2'

Packages suggested but not available for checking:
  'afex', 'BayesFactor', 'forcats', 'gapminder', 'ggcorrplot',
  'gginnards', 'ggside', 'knitr', 'lme4', 'metaBMA', 'metafor',
  'PMCMRplus', 'psych', 'rmarkdown', 'spelling', 'testthat', 'tibble',
  'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'purrr', 'dplyr', 'magrittr', 'tidyr', 'forcats'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'ggplot2'

Package suggested but not available for checking: 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'dplyr', 'plyr', 'reshape2', 'testthat', 'data.table', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'compositions', 'gridExtra', 'gtable', 'latex2exp',
  'plyr', 'scales', 'proto', 'hexbin'

Package which this enhances but not available for checking: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridtext', 'rlang', 'scales'

Packages suggested but not available for checking:
  'cowplot', 'dplyr', 'glue', 'knitr', 'rmarkdown', 'testthat',
  'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'miniUI', 'rstudioapi', 'ggplot2', 'formatR'

Package suggested but not available for checking: 'extrafont'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'purrr', 'scales', 'stringr', 'tibble'

Packages suggested but not available for checking:
  'dplyr', 'covr', 'extrafont', 'glue', 'knitr', 'lintr', 'maps',
  'mapproj', 'pander', 'rlang', 'rmarkdown', 'spelling', 'testthat',
  'tidyr', 'vdiffr', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'tikzDevice'

Packages suggested but not available for checking:
  'stringr', 'rmarkdown', 'knitr', 'testthat', 'covr', 'magick'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/examples.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'data.table'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggthemes', 'prettydoc'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'psych', 'abind', 'viridis', 'Rdpack', 'xlsx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gtable', 'tibble', 'rlang', 'scales'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'ggplot2', 'dplyr', 'stringr', 'magrittr', 'purrr', 'tibble',
  'plotly', 'RVenn'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyr', 'venn', 'RColorBrewer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'jsonlite', 'shiny', 'magrittr', 'dplyr', 'rlang',
  'htmltools'

Packages suggested but not available for checking:
  'lubridate', 'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'deldir', 'sp', 'rgeos', 'raster'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggmap', 'dplyr', 'scales', 'testthat',
  'vdiffr', 'mapproj'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'ggmap', 'mapproj'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'scales', 'colorspace', 'png'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggrepel', 'wordcloud',
  'wordcloud2', 'covr', 'dplyr', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sets', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rrBLUP'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'fs', 'gh', 'glue', 'httr', 'lubridate', 'purrr',
  'rlang', 'tibble', 'whisker', 'withr', 'dplyr', 'cli'

Packages suggested but not available for checking:
  'here', 'knitr', 'rmarkdown', 'sodium', 'styler', 'usethis', 'gert',
  'readr', 'gitcreds'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'refund', 'CompQuadForm', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'bookdown',
  'GeneralisedCovarianceMeasure', 'ggplot2', 'reshape2', 'dplyr',
  'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gh', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'prismatic'

Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'knitr', 'rmarkdown', 'testthat', 'crayon',
  'cowplot', 'codemetar'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CVXR', 'Rdsdp', 'gtools', 'seqminer', 'RSpectra', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R6'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crul', 'jsonlite', 'R6', 'graphql'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'gitcreds', 'httr', 'ini', 'jsonlite'

Packages suggested but not available for checking:
  'covr', 'knitr', 'mockery', 'rmarkdown', 'rprojroot', 'spelling',
  'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'pbmcapply', 'plyr', 'numbers', 'purrr', 'extraDistr', 'dplyr',
  'rlang', 'reshape2', 'rootSolve', 'texreg'

Packages suggested but not available for checking:
  'BiasedUrn', 'igraph', 'knitr', 'rmarkdown', 'ggplot2', 'ggraph',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'tibble', 'rlang'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
acovamcmc: no visible global function definition for 'rnorm'
acovamcmc: no visible global function definition for 'rgamma'
acovamcmc: no visible binding for global variable 'quantile'
acovamcmc: no visible global function definition for 'quantile'
acovamcmc: no visible global function definition for 'var'
plot.acovamcmc: no visible global function definition for 'dev.new'
plot.acovamcmc: no visible global function definition for 'par'
plot.acovamcmc: no visible global function definition for 'density'
plot.acovamcmc: no visible global function definition for 'acf'
plot.acovamcmc: no visible global function definition for 'contour'
plot.acovamcmc: no visible global function definition for 'image'
plot.acovamcmc: no visible global function definition for 'persp'
Undefined global functions or variables:
  acf contour density dev.new image par persp quantile rgamma rnorm var
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "contour", "image", "par", "persp")
  importFrom("stats", "acf", "density", "quantile", "rgamma", "rnorm",
             "var")
to your NAMESPACE file.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'gibbs.met/R/firstlib.R':
  .First.lib calls:
    cat("Naive Gibbs Sampling with Metropolis steps(gibbs.met) loaded\n",     "COPYRIGHT 2008 (c) Longhai Li (http://math.usask.ca/~longhai)\n",     "Type ?begin.gibbs.met for help to this package\n", sep = "")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

met_gaussian : one_transition: no visible global function definition
  for 'rnorm'
met_gaussian : one_transition: no visible global function definition
  for 'runif'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Packages required but not available: 'randomForest', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'colorspace'

Packages suggested but not available for checking:
  'knitr', 'psych', 'psychTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'ggplot2', 'gapminder'
Packages required but not available: 'xml2', 'base64enc', 'R.utils'

Packages suggested but not available for checking:
  'rgl', 'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'glue'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'namespace', 'processx', 'readr', 'tibble'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'Runuran', 'ghyp'
Packages required but not available:
  'assertthat', 'dplyr', 'dynutils', 'purrr', 'Rcpp', 'RcppXPtrUtils',
  'readr', 'rlang', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'GillespieSSA', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'lavaan', 'igraph', 'qgraph', 'data.tree', 'MIIVsem', 'imputeTS',
  'nloptr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinyjs', 'rintrojs', 'easycsv', 'miniUI', 'shinyWidgets',
  'rstudioapi', 'rhandsontable', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'curl', 'Kendall', 'ncdf4', 'zyp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'EBImage', 'png', 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'energy', 'readxl', 'randomForest', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'ineq', 'IC2'
Packages required but not available:
  'raster', 'circular', 'rgdal', 'rgeos', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'shiny', 'miniUI', 'tibble', 'rstudioapi', 'dplyr', 'purrr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'BH'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/GiRaF_introduction.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'countrycode', 'geojsonsf', 'rappdirs', 'sf'

Packages suggested but not available for checking:
  'eurostat', 'ggplot2', 'knitr', 'lwgeom', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maptools', 'sp', 'RColorBrewer', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'crul', 'httr', 'magrittr', 'assertthat', 'knitr',
  'rmarkdown', 'dplyr'

Packages suggested but not available for checking: 'git2r', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'assertthat', 'git2r', 'yaml'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'microbenchmark', 'rmarkdown', 'spelling',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'getPass'
Packages required but not available: 'git2r', 'diffr'

Packages suggested but not available for checking:
  'gitcreds', 'rstudioapi', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'mockery', 'oskeyring', 'rmarkdown', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'oskeyring'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'attempt', 'bookdown', 'dplyr', 'git2r', 'knitr', 'magrittr',
  'purrr', 'rmarkdown', 'stringi', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'httr', 'jsonlite', 'dplyr', 'tidyr', 'tibble',
  'stringr', 'mockery', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'miniUI', 'rstudioapi', 'curl', 'jsonlite', 'dplyr',
  'shinyFiles', 'callr', 'usethis', 'markdown'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'data.table', 'devtools', 'httr', 'jsonlite', 'mockery'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clipr', 'clisymbols', 'crayon', 'curl', 'glue', 'here', 'jsonlite',
  'purrr', 'xfun'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arpr', 'base64enc', 'dplyr', 'httr', 'magrittr', 'purrr', 'shiny',
  'stringr', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'yaml'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'rlang'

Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat', 'rmarkdown', 'fs', 'rprojroot',
  'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'data.table', 'gert', 'processx', 'targets', 'tibble', 'uuid'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'alabama', 'rootSolve'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RANN', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'MCMCpack', 'plyr', 'ggplot2', 'moments'

Packages suggested but not available for checking: 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magic', 'VGAM', 'survey', 'trust', 'VineCopula', 'ggplot2',
  'matrixStats', 'mnormt', 'gamlss.dist', 'Rmpfr', 'scam', 'psych',
  'copula', 'distrEx', 'numDeriv', 'evd', 'ismev'

Package which this enhances but not available for checking: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'jsonlite', 'httr', 'ISOcodes'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kernlab', 'seqinr', 'ROCR', 'Rcpp'

Packages suggested but not available for checking:
  'rtracklayer', 'GenomicRanges', 'BSgenome',
  'BSgenome.Hsapiens.UCSC.hg18.masked',
  'BSgenome.Hsapiens.UCSC.hg19.masked', 'BiocGenerics', 'Biostrings',
  'GenomeInfoDb', 'IRanges', 'S4Vectors'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Ecdat', 'lubridate', 'progress'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GGally', 'dplyr', 'forcats', 'ggplot2', 'openxlsx', 'purrr',
  'tibble', 'tidyr', 'gridExtra'

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'knitr', 'rmarkdown', 'skimr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'RUnit', 'knitr', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/glarma.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/glarma.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'glmnet', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'formatR', 'doMC'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'glasso', 'rbenchmark'
fptcdf: no visible global function definition for 'dnorm'
fptcdf: no visible global function definition for 'pnorm'
fptpdf: no visible global function definition for 'pnorm'
fptpdf: no visible global function definition for 'dnorm'
lba: no visible global function definition for 'as.formula'
lba: no visible global function definition for 'model.frame'
lba : logl: no visible global function definition for 'head'
lba: no visible global function definition for 'optim'
pmod: no visible global function definition for 'model.frame'
pmod: no visible global function definition for 'model.matrix'
rlba: no visible global function definition for 'pnorm'
rlba: no visible global function definition for 'rnorm'
rlba: no visible global function definition for 'runif'
tablba: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  as.formula dnorm head model.frame model.matrix optim pnorm rnorm
  runif
Consider adding
  importFrom("stats", "as.formula", "dnorm", "model.frame",
             "model.matrix", "optim", "pnorm", "rnorm", "runif")
  importFrom("utils", "head")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'e1071', 'lmom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GLDEX', 'ddst'

Package suggested but not available for checking: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcgmin', 'lbfgsb3c', 'BB', 'ape', 'numDeriv', 'plyr', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'TMB', 'mvabund', 'statmod', 'fishMod', 'RcppEigen'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'gclus', 'corrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'mnormt', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'stringr', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr', 'ggplot2', 'gridExtra',
  'gtools', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'emplik'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'dplyr', 'magrittr', 'gam', 'RcppNumerical', 'Rcpp',
  'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reshape', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'partykit', 'Formula'

Package suggested but not available for checking: 'vcd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'parameters'

Packages suggested but not available for checking:
  'testthat', 'lme4', 'lmerTest', 'gam', 'multcomp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'mvtnorm'
Running examples in 'glmlep-Ex.R' failed
The error most likely occurred in:

> ### Name: cv.glmlep
> ### Title: Cross-validation for 'glmlep'.
> ### Aliases: cv.glmlep
> ### Keywords: LEP GLM Cross-validation
> 
> ### ** Examples
> 
> 
> ## generate data from multivariate normal distribution
> require(mvtnorm)
Loading required package: mvtnorm
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'mvtnorm'
> n = 100;
> beta <- c(3,1.5,0,0,2,0,0,0)
> 
> set.seed(100)
> p=length(beta);
> corr_data=diag(rep(1,p));
> x=as.matrix(rmvnorm(n,rep(0,p),corr_data))
Error in rmvnorm(n, rep(0, p), corr_data) : 
  could not find function "rmvnorm"
Calls: as.matrix
Execution halted
Package required but not available: 'matrixStats'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pkgdown', 'multcomp', 'emmeans',
  'estimability', 'effects', 'DHARMa', 'optimParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'matrixcalc'

Package suggested but not available for checking: 'mlmRev'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'assertthat', 'broom', 'broom.mixed', 'dplyr', 'forcats',
  'ggplot2', 'loo', 'mvtnorm', 'reshape2', 'rstan', 'rstantools',
  'tibble', 'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'bayesplot', 'coda', 'knitr', 'rmarkdown', 'testthat', 'viridis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MuMIn', 'ggplot2', 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'minqa'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'lme4'
Errors in running code in vignettes:
when running code in 'glmmML.Rnw'
Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  'glmmML.Rnw' using 'UTF-8'... failed to complete the test
Packages required but not available:
  'lme4', 'bigmemory', 'Rcpp', 'ggplot2', 'ncvreg', 'reshape2',
  'rstan', 'rstantools', 'stringr', 'mvtnorm', 'BH', 'RcppArmadillo',
  'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'trust', 'mvtnorm', 'doParallel', 'foreach', 'itertools'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'gghalves', 'ggplot2', 'ggpubr', 'lme4', 'plotly', 'qvalue',
  'pbapply', 'pbmcapply'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra', 'edgeR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'R6', 'Rcpp', 'numDeriv', 'RcppEigen', 'BH'

Packages suggested but not available for checking:
  'BradleyTerry2', 'knitr', 'mdhglm', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'TMB', 'lme4', 'numDeriv', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2', 'mlmRev', 'bbmle',
  'pscl', 'coda', 'reshape2', 'car', 'emmeans', 'estimability',
  'DHARMa', 'multcomp', 'MuMIn', 'effects', 'dotwhisker', 'broom',
  'broom.mixed', 'plyr', 'png', 'texreg', 'xtable', 'huxtable',
  'mvabund'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/glmmTMB.Rnw'
   'inst/doc/model_evaluation.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'shape', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'lars', 'testthat', 'xfun', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'doParallel', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pBrackets', 'effects', 'AER', 'pscl', 'lme4', 'lmtest', 'sandwich',
  'censReg', 'plm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmpath'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'logisticPCA', 'markdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'logisticPCA'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'mlogit', 'dfidx', 'survey', 'AER'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'devtools'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'stringr', 'dplyr', 'statmod', 'magrittr', 'tweedie',
  'ggplot2', 'cplm'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'Rfast'

Packages suggested but not available for checking: 'aplore3', 'ISLR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'ggplot2', 'foreach', 'doParallel', 'caret', 'assertthat',
  'formatR'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'partykit', 'magrittr', 'dplyr', 'caret'

Packages suggested but not available for checking:
  'FactoMineR', 'knitr', 'testthat', 'covr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'leaps'

Packages suggested but not available for checking: 'aod', 'lme4', 'pscl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'ncvreg', 'brglm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'VGAM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'lmtest', 'sandwich'

Packages suggested but not available for checking:
  'AER', 'gld', 'numDeriv', 'pscl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'snowfall'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sybil'

Package suggested but not available for checking: 'cplexAPI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
CreateFormula: no visible global function definition for 'as.formula'
GeneratePvalues: no visible binding for global variable 'binomial'
globalARTP: no visible binding for global variable 'binomial'
globalFisher: no visible binding for global variable 'binomial'
globalFisher: no visible global function definition for 'pchisq'
globalSimes: no visible binding for global variable 'binomial'
pvalFmla: no visible binding for global variable 'binomial'
pvalFmla: no visible global function definition for 'glm'
pvalFmla: no visible global function definition for 'anova'
runPermut: no visible binding for global variable 'binomial'
runPvalues: no visible binding for global variable 'binomial'
Undefined global functions or variables:
  anova as.formula binomial glm pchisq
Consider adding
  importFrom("stats", "anova", "as.formula", "binomial", "glm", "pchisq")
to your NAMESPACE file.
Packages required but not available:
  'spatstat.random', 'spatstat.core', 'spatstat.geom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'markdown', 'GetoptLong'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'zoo', 'sandwich'

Packages suggested but not available for checking:
  'strucchange', 'fxregime'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'purrr', 'readxl', 'rlang',
  'rnaturalearth', 'rnaturalearthdata', 'sf', 'tibble', 'tidyr',
  'tmap', 'units', 'writexl'

Packages suggested but not available for checking:
  'htmlwidgets', 'jsonlite', 'mapedit', 'plotly', 'RColorBrewer', 's2',
  'scales', 'vegan', 'viridisLite', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'RcppParallel', 'scales', 'R6', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'viridisLite', 'magick', 'qs'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Malformed Description field: should contain one or more complete sentences.
ScoreTest: no visible global function definition for 'pchisq'
Var1: no visible global function definition for 'runif'
gLRT1: no visible global function definition for 'pchisq'
gLRT2: no visible global function definition for 'pchisq'
gLRT3: no visible global function definition for 'pchisq'
gLRT4: no visible global function definition for 'pf'
Undefined global functions or variables:
  pchisq pf runif
Consider adding
  importFrom("stats", "pchisq", "pf", "runif")
to your NAMESPACE file.
Packages required but not available: 'mvtnorm', 'corpcor'

Packages suggested but not available for checking: 'ape', 'mvSLOUCH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'magrittr'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'httr', 'knitr', 'markdown', 'mockr', 'rmarkdown',
  'rvest', 'spelling', 'stringr', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'crayon', 'DBI', 'dplyr', 'forcats', 'ggplot2', 'knitr',
  'magrittr', 'microbenchmark', 'R.utils', 'rmarkdown', 'rprintf',
  'RSQLite', 'stringr', 'testthat', 'vctrs', 'waldo', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages unavailable to check Rd xrefs: 'crayon', 'DBI'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'gridExtra', 'pracma', 'scales', 'tidyr', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'tidyr', 'dplyr', 'coin'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'preprocessCore', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'crayon', 'gargle', 'httr', 'jsonlite', 'lifecycle',
  'magrittr', 'mime', 'rematch2'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'sodium', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maptools', 'caTools', 'classInt', 'coin', 'corrplot', 'DescTools',
  'dismo', 'ggplot2', 'ggrepel', 'gridExtra', 'Hmisc', 'InPosition',
  'kimisc', 'lsr', 'plyr', 'pROC', 'raster', 'RcmdrMisc', 'rgdal',
  'rgeos', 'sp', 'spatstat.geom', 'spatstat.core', 'spatstat.random'

Packages suggested but not available for checking:
  'archdata', 'gdistance', 'resample'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gRbase', 'igraph'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ellipse', 'RcppArmadillo'

Packages suggested but not available for checking:
  'idr', 'Hmisc', 'RColorBrewer', 'foreach', 'jpeg', 'testthat',
  'knitr', 'rmarkdown', 'shiny', 'shinydashboard', 'shinyBS',
  'rhandsontable', 'DT'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/GMCM-JStatSoft.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'PolynomF', 'multcomp', 'mvtnorm', 'CommonJavaJars', 'rJava',
  'JavaGD', 'xlsxjars'

Packages suggested but not available for checking:
  'RUnit', 'Deducer', 'knitr', 'graph', 'mutoss', 'coin'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/AQuickStart.Rnw'
   'inst/doc/gMCP.Rnw'
   'inst/doc/parametric.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DBI', 'RMySQL', 'foreach', 'digest', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'randomForest', 'glmnet', 'plotly', 'magrittr', 'xtable'

Package suggested but not available for checking: 'mlbench'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'Rcpp', 'RSpectra', 'robustbase', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BiasedUrn', 'binom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'gstat', 'compositions', 'sp', 'foreach', 'RColorBrewer'

Packages suggested but not available for checking:
  'FNN', 'JADE', 'jointDiag', 'DescTools', 'knitr', 'rmarkdown',
  'magrittr', 'readxl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'purrr', 'rlang', 'stringr', 'tidyr',
  'visNetwork'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'htmlTable', 'abind', 'checkmate', 'forestplot', 'Hmisc',
  'glue', 'knitr', 'lubridate', 'magrittr', 'rlang', 'rmarkdown',
  'stringr', 'XML', 'yaml'

Packages suggested but not available for checking:
  'dplyr', 'jsonlite', 'testthat', 'tidyselect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppArmadillo'

Package suggested but not available for checking: 'plot3D'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'SeqArray', 'SeqVarTools', 'CompQuadForm', 'foreach',
  'RcppArmadillo'

Packages suggested but not available for checking: 'doMC', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'minqa', 'magic'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sandwich'

Packages suggested but not available for checking:
  'knitr', 'mvtnorm', 'car', 'stabledist', 'timeDate', 'timeSeries'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/gmm_with_R.rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maxLik', 'Formula', 'plotrix', 'msm', 'mlogit', 'truncnorm'

Packages suggested but not available for checking:
  'AER', 'lmtest', 'car', 'memisc', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gdata'

Packages suggested but not available for checking:
  'gplots', 'gtools', 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggrepel', 'geometry', 'ggplot2', 'rgl', 'Rfast', 'plyr',
  'tidyselect', 'tidyr', 'tibble', 'purrr', 'dplyr', 'rlang', 'png',
  'sp'

Packages suggested but not available for checking:
  'tikzDevice', 'gridExtra', 'knitr', 'rmarkdown', 'roxygen2', 'ggsci',
  'tidyverse', 'magrittr', 'scales', 'pdftools', 'testthat', 'webshot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gmp', 'purrr', 'mvp', 'english'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'Rmpfr', 'round'
Packages unavailable to check Rd xrefs: 'Rmpfr', 'round'
Packages required but not available: 'combinat', 'transport', 'igraph'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'glue', 'htmltools', 'knitr', 'magick', 'magrittr',
  'rlang', 'rstudioapi', 'stringr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinydashboard', 'shinyjs', 'shinycssloaders'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'ggplot2', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang', 'stringr', 'yaml'

Packages suggested but not available for checking:
  'curl', 'magclass', 'qgraph', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Brobdingnag', 'mvnfast', 'pbapply', 'gsl'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'clinfun', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DCCA', 'PerformanceAnalytics', 'nonlinearTseries', 'fitdistrplus',
  'fgpt', 'tseries'

Packages suggested but not available for checking:
  'xts', 'zoo', 'quantmod', 'fracdiff'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'wordcloud'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'alabama', 'nleqslv', 'BB', 'SQUAREM'

Package suggested but not available for checking: 'sensitivity'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ismev', 'rmutil'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmutil'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'qvcalc', 'relimp'

Packages suggested but not available for checking: 'testthat', 'vcdExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'keras', 'tensorflow', 'R6', 'qrng', 'copula'

Packages suggested but not available for checking: 'nvmix', 'qrmdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'minqa', 'triangle', 'kableExtra'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'jsonlite', 'httr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'devtools', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'robustbase', 'capushe'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'vegan', 'ggplot2', 'ggrepel', 'igraph', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'vegan', 'fields', 'Hmisc'

Packages suggested but not available for checking:
  'vegdata', 'BiodiversityR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'magrittr', 'rrpack', 'glmnet', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'quanteda', 'slam', 'SnowballC', 'tm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'epiR', 'reshape', 'stringr', 'VGAM'

Packages suggested but not available for checking:
  'serp', 'dfidx', 'mlogit', 'ordinal', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'actuar', 'fitdistrplus', 'survsim', 'ggplot2', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'copula', 'foreach', 'doSNOW', 'R.utils', 'SparseGrid', 'numDeriv',
  'VineCopula', 'yarrr', 'progress', 'crayon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'fda.usc', 'glmnet', 'ks', 'RcppArmadillo'

Packages suggested but not available for checking:
  'microbenchmark', 'knitr', 'viridisLite', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'ggplot2', 'Rsolnp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'rmarkdown', 'rhandsontable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fitdistrplus', 'sn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GANPA', 'WGCNA'

Packages suggested but not available for checking:
  'GANPA', 'WGCNA', 'GANPAdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fGarch', 'fastICA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fastlogranktest', 'pbmcapply', 'PWEALL', 'rlang'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'tm', 'SnowballC', 'magrittr', 'futile.logger',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'knitr', 'pdftools', 'RISmed'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'attempt', 'brio', 'cli', 'config', 'crayon', 'desc', 'fs', 'here',
  'htmltools', 'pkgload', 'roxygen2', 'rstudioapi', 'shiny', 'usethis',
  'yaml'

Packages suggested but not available for checking:
  'attachment', 'covr', 'devtools', 'dockerfiler', 'knitr', 'pkgbuild',
  'pkgdown', 'processx', 'purrr', 'rcmdcheck', 'rlang', 'rmarkdown',
  'rsconnect', 'spelling', 'stringr', 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'glue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'classInt', 'corrplot'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'car', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clisymbols', 'covr', 'crayon', 'cyclocomp', 'desc', 'jsonlite',
  'lintr', 'praise', 'rcmdcheck', 'rstudioapi', 'whoami', 'withr',
  'xml2', 'xmlparsedata'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'copula', 'maxLik', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'cli', 'dplyr', 'googleAuthR', 'httr', 'jsonlite',
  'magrittr', 'measurementProtocol', 'memoise', 'purrr', 'rlang',
  'tibble', 'tidyr', 'usethis', 'whisker'

Packages suggested but not available for checking:
  'bigQueryR', 'covr', 'formatR', 'ganalytics', 'googleCloudStorageR',
  'htmlwidgets', 'knitr', 'lifecycle', 'miniUI', 'rmarkdown', 'shiny',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'cli', 'digest', 'gargle', 'httr', 'jsonlite',
  'memoise', 'rlang'

Packages suggested but not available for checking:
  'bigQueryR', 'covr', 'devtools', 'formatR', 'googleAnalyticsR',
  'knitr', 'miniUI', 'rmarkdown', 'roxygen2', 'rstudioapi', 'shiny',
  'testthat', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'cli', 'curl', 'googleAuthR', 'googleCloudStorageR',
  'googlePubsubR', 'httr', 'jose', 'jsonlite', 'openssl', 'plumber',
  'usethis', 'withr', 'yaml'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'miniUI', 'rmarkdown', 'rstudioapi', 'shiny',
  'targets', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'cli', 'curl', 'googleAuthR', 'httr', 'jsonlite',
  'openssl', 'yaml', 'zip'

Packages suggested but not available for checking:
  'fs', 'googleComputeEngineR', 'knitr', 'readr', 'rmarkdown',
  'sodium', 'testthat', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'googleAuthR', 'jsonlite', 'purrr', 'data.table', 'glue'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'mockery', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'future', 'googleAuthR', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'covr', 'googleCloudStorageR', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'gargle', 'glue', 'httr', 'jsonlite', 'lifecycle', 'magrittr',
  'pillar', 'purrr', 'rlang', 'tibble', 'uuid', 'vctrs', 'withr'

Packages suggested but not available for checking:
  'covr', 'curl', 'downlit', 'dplyr', 'knitr', 'mockr', 'rmarkdown',
  'roxygen2', 'sodium', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'rvest', 'xml2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'rvest', 'EBImage', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'base64enc', 'googleAuthR', 'jsonlite', 'magrittr',
  'purrr', 'tibble'

Packages suggested but not available for checking:
  'cld2', 'testthat', 'knitr', 'rmarkdown', 'rvest', 'shiny',
  'shinyjs', 'stringdist', 'tidyr', 'tuneR', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'jsonlite', 'purrr', 'readr', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'sf', 'sfheaders', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'googleAuthR', 'jsonlite', 'httr'

Package suggested but not available for checking: 'drat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'readxl'

Packages suggested but not available for checking:
  'testthat', 'covr', 'googleVis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'googleAuthR', 'cli', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'jsonlite', 'base64enc', 'knitr', 'rmarkdown', 'shiny',
  'future', 'promises'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cellranger', 'cli', 'curl', 'gargle', 'glue', 'googledrive', 'httr',
  'ids', 'magrittr', 'purrr', 'rematch2', 'rlang', 'tibble', 'vctrs'

Packages suggested but not available for checking:
  'covr', 'readr', 'rmarkdown', 'sodium', 'spelling', 'testthat',
  'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'future', 'googleAuthR', 'httr', 'jsonlite', 'dplyr',
  'purrr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Packages suggested but not available for checking:
  'shiny', 'httpuv', 'knitr', 'rmarkdown', 'markdown', 'data.table'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'curl', 'htmlwidgets', 'htmltools', 'magrittr', 'shiny',
  'jpeg', 'jqr', 'viridisLite', 'scales', 'googlePolylines'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggdendro', 'gridExtra', 'RColorBrewer'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ICsurv', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bain', 'mvtnorm', 'quadprog', 'lme4', 'lavaan', 'limSolve'

Packages suggested but not available for checking:
  'testthat', 'FRACTION', 'matrixcalc', 'restriktor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BradleyTerry2', 'ggplot2', 'ggparty', 'partykit', 'PlackettLuce',
  'psychotools', 'qvcalc', 'tidyr', 'patchwork'

Packages suggested but not available for checking:
  'gnm', 'knitr', 'psychotree', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmarkdown'

Packages suggested but not available for checking:
  'reticulate', 'testthat', 'crosstalk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Package suggested but not available for checking: 'tinytest'
Packages required but not available:
  'GO.db', 'gontr', 'ggraph', 'igraph', 'network', 'dplyr', 'biomaRt',
  'annotate', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pander', 'stringi', 'gms', 'citation', 'yaml'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'barcode', 'vcd', 'colorspace'

Package which this enhances but not available for checking: 'YaleToolkit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiceKriging', 'emoa', 'Rcpp', 'rgenoud', 'pbivnorm', 'pso',
  'randtoolbox', 'KrigInv', 'DiceDesign', 'ks', 'rgl'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/GPareto_vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Random.Start: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
Packages required but not available: 'Rcpp', 'RcppEigen', 'RcppProgress'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'data.table', 'RJSONIO'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'dplyr', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'reshape2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ltm', 'Rcpp', 'TeachingDemos', 'cubature', 'caret', 'statmod',
  'mvtnorm', 'mirt', 'RcppArmadillo'

Package suggested but not available for checking: 'gvcm.cat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.r1: no visible global function definition for 'cor'
.r2: no visible global function definition for 'cor'
rgp: no visible global function definition for 'runif'
rgp: no visible global function definition for 'rexp'
Undefined global functions or variables:
  cor rexp runif
Consider adding
  importFrom("stats", "cor", "rexp", "runif")
to your NAMESPACE file.
Packages required but not available:
  'Rcpp', 'fields', 'interp', 'fda', 'fda.usc', 'RcppArmadillo'

Packages suggested but not available for checking:
  'mvtnorm', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lhs'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'DiceKriging', 'GPareto', 'KrigInv', 'DiceDesign', 'mnormt',
  'mvtnorm', 'matrixStats'

Packages suggested but not available for checking: 'DiceOptim', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'FNN', 'RcppArmadillo', 'BH'

Packages suggested but not available for checking:
  'fields', 'knitr', 'rmarkdown', 'testthat', 'maps', 'maptools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'askpass'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'IndexNumR'
Package required but not available: 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'AER'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'knitr'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'isotone', 'plyr', 'ggplot2', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'lhs', 'randtoolbox', 'pracma', 'foreach', 'doParallel',
  'iterators', 'RcppArmadillo'

Package suggested but not available for checking: 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rstan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rstan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'RCurl', 'ggplot2', 'plotly', 'tidyr', 'crosstalk',
  'gridExtra', 'viridisLite', 'dplyr'

Packages suggested but not available for checking:
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VignetteBuilder packages required for checking but not installed:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'nbpMatching'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
  'geosphere', 'htmlwidgets', 'leaflet', 'leaflet.extras', 'plotKML',
  'plyr', 'purrr', 'rgdal', 'sp', 'spacetime', 'suncalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fields'

Package suggested but not available for checking: 'spam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available: 'ape', 'seqinr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'scalreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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manual.
Packages required but not available:
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Files named as vignettes but with no recognized vignette engine:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder packages required for checking but not installed:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'rex', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
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(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/ge-intro.Rnw'
(Is a VignetteBuilder field missing?)
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'vars', 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'plyr', 'RColorBrewer', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'car'

Package suggested but not available for checking: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Package suggested but not available for checking: 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
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Packages suggested but not available for checking: 'shinytest', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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VignetteBuilder package required for checking but not installed: 'knitr'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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  'rlang', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROptSpace', 'Rdpack'

Package suggested but not available for checking: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Packages suggested but not available for checking: 'rtweet', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Package suggested but not available for checking: 'EBImage'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'Matrix'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GrassmannOptim: no visible global function definition for 'rnorm'
GrassmannOptim: no visible global function definition for 'runif'
GrassmannOptim : <anonymous>: no visible global function definition for
  'expm'
GrassmannOptim : <anonymous>: no visible global function definition for
  'Matrix'
Undefined global functions or variables:
  Matrix expm rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Packages required but not available: 'clock', 'ellipsis', 'rlang', 'vctrs'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Packages suggested but not available for checking:
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  'scales', 'survey', 'taxstats', 'taxstats1516', 'testthat', 'tibble',
  'viridis', 'yaml', 'withr', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lubridate', 'dplyr', 'tsibble', 'tibble', 'rlang', 'tidyr',
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  'ineq', 'magrittr'

Packages suggested but not available for checking:
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  'readr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'RcppEigen', 'RcppArmadillo'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/arrays.Rnw'
   'inst/doc/graphs.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nloptr', 'cubature'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gRbase', 'magrittr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'cowplot', 'data.table', 'dplyr', 'ggplot2', 'ggpubr',
  'ggrepel', 'magrittr', 'rlang', 'Rtsne', 'scales', 'stringr',
  'viridis'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'imagine', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'future', 'listenv', 'ggplot2', 'RSpectra', 'gtable',
  'gridExtra', 'cba', 'cli', 'RcppArmadillo'

Packages suggested but not available for checking:
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  'ggraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rJava', 'GreedyExperimentalDesignJARs', 'Rcpp', 'checkmate',
  'nbpMatching', 'survey', 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'assertthat'

Packages suggested but not available for checking:
  'clisymbols', 'swirlify', 'swirl', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'dqrng', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'hydroGOF', 'FME', 'data.table', 'reshape2', 'ggplot2', 'sf',
  'dplyr', 'magrittr', 'tmap', 'gridExtra', 'tidyselect', 'classInt',
  'networkD3', 'parallelly'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
  'forestplot', 'Gmisc', 'Hmisc', 'stringr', 'rms', 'sandwich',
  'htmlTable', 'magrittr', 'knitr', 'Epi'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'purrr', 'tidyr', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'gRbase', 'gRim', 'abind', 'copula', 'quadprog', 'mvtnorm',
  'mev'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'corrplot', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'igraph', 'mclust', 'blockmodels', 'aricode', 'pbmcapply'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'glmnet', 'Iso', 'pROC', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'rms', 'latticeExtra', 'ggplot2', 'Formula', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'callr', 'cli', 'coda', 'future', 'glue', 'parallelly',
  'progress', 'R6', 'reticulate', 'tensorflow', 'yesno'

Packages suggested but not available for checking:
  'bayesplot', 'covr', 'cramer', 'DiagrammeR', 'extraDistr', 'fields',
  'ggplot2', 'knitr', 'MCMCpack', 'mockery', 'mvtnorm', 'rmarkdown',
  'rmutil', 'spelling', 'testthat', 'tidyverse', 'truncdist', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ResistorArray'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'generics', 'pracma', 'nloptr', 'statmod', 'zoo', 'texreg', 'Rcpp'

Packages suggested but not available for checking:
  'smooth', 'doMC', 'doParallel', 'foreach', 'testthat', 'rmarkdown',
  'knitr'

Package which this enhances but not available for checking: 'vars'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'survAUC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiceKriging', 'lmtest', 'Rcpp', 'sandwich', 'RcppEigen'

Packages suggested but not available for checking: 'DiagrammeR', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'graph', 'gridGraphviz', 'gridSVG'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtable'

Packages suggested but not available for checking:
  'ggplot2', 'egg', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'polyclip'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages required but not available: 'graph', 'Rgraphviz'

Package suggested but not available for checking: 'gridSVG'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'Rcpp', 'Ckmeans.1d.dp', 'fossil', 'dqrng', 'mclust', 'Rdpack',
  'plotrix'

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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'glue', 'memoise', 'png', 'rlang', 'sf'

Packages suggested but not available for checking:
  'ambient', 'knitr', 'magick', 'ragg', 'rmarkdown', 'svglite',
  'testthat', 'vdiffr'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'reshape2', 'plyr', 'shinythemes', 'BiasedUrn',
  'shinyBS'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'markdown', 'rlang', 'Rcpp', 'RCurl', 'png', 'jpeg', 'stringr',
  'xml2'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'vdiffr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'png', 'jpeg', 'base64enc'

Packages suggested but not available for checking: 'gridSVG', 'rsvg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'colorspace'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gRbase', 'graph', 'Rgraphviz', 'igraph', 'gRain', 'magrittr',
  'Rcpp', 'RcppArmadillo', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'dplyr', 'tidyr', 'magrittr', 'tibble', 'rlang'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'msm', 'numDeriv', 'optimParallel'

Packages suggested but not available for checking:
  'bookdown', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'rrBLUP'

Packages suggested but not available for checking:
  'BGLR', 'e1071', 'ggplot2', 'knitr', 'randomForest', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'glue', 'gridExtra', 'magrittr', 'png', 'purrr',
  'RCurl', 'stringr', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'R6', 'scales', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rrcov', 'pls', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'ape', 'glpkAPI', 'quadprog'

Package suggested but not available for checking: 'phangorn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bnlearn', 'ClustOfVar', 'PCAmixdata', 'arules', 'zoo', 'PRROC',
  'MLmetrics', 'rlist', 'magrittr', 'visNetwork', 'plyr', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'dplyr', 'numbers', 'lifecycle', 'plyr', 'purrr',
  'rearrr', 'rlang', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'broom', 'covr', 'ggplot2', 'hydroGOF', 'knitr', 'lmerTest',
  'rmarkdown', 'testthat', 'xpectr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'doParallel', 'foreach', 'qvalue', 'RcppEigen', 'BH'

Packages suggested but not available for checking:
  'knitr', 'snplist', 'BEDMatrix'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/groupedSurv.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'rlang', 'vctrs', 'purrr', 'tidyr', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tcltk2', 'mvtnorm', 'container'

Packages suggested but not available for checking:
  'knitr', 'tinytest', 'rmarkdown', 'ggplot2', 'gridExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rsolnp', 'glm2', 'rjags'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'wavethresh', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'spam', 'ggplot2', 'reshape2', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'minpack.lm'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'dplyr', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'dae', 'ggplot2', 'stringi', 'readxl', 'Hmisc', 'GGally',
  'RColorBrewer', 'reshape'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'clime', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'deSolve', 'FME'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmutil'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'colorspace', 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'grplasso'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'pander', 'isotone'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'randomForest', 'RPtests', 'ranger'

Package suggested but not available for checking: 'xyz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bootstrap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'rgl', 'misc3d'
Package required but not available: 'edgeR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.gsa.assignGATKTableToEnvironment: no visible global function
  definition for 'type.convert'
Undefined global functions or variables:
  type.convert
Consider adding
  importFrom("utils", "type.convert")
to your NAMESPACE file.
Package suggested but not available for checking: 'impute'
Package required but not available: 'e1071'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gsDesign'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gridExtra', 'ggplot2', 'stringr', 'progress', 'psych',
  'fastDummies', 'fclust', 'devtools', 'foreach', 'doSNOW'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dplyr', 'gsDesign', 'mvtnorm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'msigdbr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'magrittr', 'rlang', 'dplyr', 'tidyr', 'xtable'

Packages suggested but not available for checking:
  'knitr', 'scales', 'rmarkdown', 'gt', 'testthat', 'covr',
  'gridExtra', 'tibble', 'mvtnorm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ontologyIndex'

Packages suggested but not available for checking: 'markdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'memoise', 'rootSolve', 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'ade4'
Running examples in 'gSeg-Ex.R' failed
The error most likely occurred in:

> ### Name: gSeg
> ### Title: Graph-Based Change-Point Detection
> ### Aliases: gSeg
> 
> ### ** Examples
> 
> 
> data(Example)
> # Five examples, each example is a n-length sequence.
> # Ei (i=1,...,5): an edge matrix representing a similarity graph constructed on the
> # observations in the ith sequence.  
> # The following code shows how the Ei's were constructed.
> 
> require(ade4) 
Loading required package: ade4
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'ade4'
> # For illustration, we use 'mstree' in this package to construct the similarity graph.
> # You can use other ways to construct the graph.
> 
> ## Sequence 1: change in mean in the middle of the sequence.
> d = 50
> mu = 2
> tau = 100
> n = 200
> set.seed(500)
> y = rbind(matrix(rnorm(d*tau),tau), matrix(rnorm(d*(n-tau),mu/sqrt(d)), n-tau))
> y.dist = dist(y)
> E1 = mstree(y.dist)
Error in mstree(y.dist) : could not find function "mstree"
Execution halted
Packages required but not available: 'SAM', 'penalized', 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'htmlwidgets', 'DiagrammeR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rrcov', 'robustbase', 'cellWise', 'ggplot2', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'mvtnorm', 'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'stringr'

Packages suggested but not available for checking: 'testthat', 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2', 'gridExtra',
  'microbenchmark', 'imager'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'
Malformed Description field: should contain one or more complete sentences.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'countrycode', 'curl', 'data.table', 'httr', 'R.utils'

Packages suggested but not available for checking:
  'dplyr', 'spelling', 'ggplot2', 'gridExtra', 'knitr', 'mapproj',
  'maps', 'remotes', 'rmarkdown', 'roxygen2', 'testthat', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ThreeWay', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'ldbounds', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Iso', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'xts', 'zoo', 'reshape2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'zoo', 'spacetime', 'FNN'

Packages suggested but not available for checking:
  'fields', 'maps', 'mapdata', 'maptools', 'rgdal', 'rgeos', 'sf',
  'stars', 'xts', 'raster', 'future', 'future.apply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'proto'

Packages suggested but not available for checking:
  'chron', 'quantreg', 'svUnit', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'truncnorm', 'Rsolnp', 'ROCR'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'GGally', 'future', 'doRNG', 'doParallel',
  'foreach', 'abind', 'mvtnorm', 'lfe', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'profvis'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'interval'
gte: no visible global function definition for 'model.extract'
gte: no visible global function definition for 'model.matrix'
gte: no visible binding for global variable 'sd'
gte: no visible global function definition for 'dnorm'
plot.gte: no visible global function definition for 'par'
plot.gte: no visible global function definition for 'polygon'
plot.gte: no visible global function definition for 'gray'
plot.gte: no visible global function definition for 'lines'
plot.gte: no visible global function definition for 'legend'
Undefined global functions or variables:
  dnorm gray legend lines model.extract model.matrix par polygon sd
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "legend", "lines", "par", "polygon")
  importFrom("stats", "dnorm", "model.extract", "model.matrix", "sd")
to your NAMESPACE file.
Package required but not available: 'ade4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'furrr', 'future', 'gtfsio', 'magrittr', 'Rcpp',
  'units', 'sf', 'terra', 'sfheaders', 'lwgeom', 'pbapply',
  'progressr', 'readr'

Packages suggested but not available for checking:
  'rmarkdown', 'markdown', 'knitr', 'testthat', 'dplyr', 'bit64'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'zip'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'cli', 'data.table', 'geodist', 'Rcpp'

Packages suggested but not available for checking:
  'alphahull', 'digest', 'dodgr', 'here', 'hms', 'knitr', 'leafem',
  'lubridate', 'lwgeom', 'mapview', 'markdown', 'pbapply', 'rmarkdown',
  'sf', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'data.table', 'gtfsio', 'sf', 'sfheaders', 'units',
  'cpp11'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'lwgeom', 'rmarkdown', 'testthat', 'zip'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'car', 'gplots', 'knitr', 'rstudioapi', 'SGP', 'taxize'
Found the following possibly unsafe calls:
File 'gtools/R/unByteCode.R':
  unlockBinding(name, env = env)
Packages unavailable to check Rd xrefs: 'taxize', 'SGP', 'car', 'gplots'
Packages required but not available: 'hts', 'quadprog', 'lassoshooting'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'bitops', 'checkmate', 'commonmark', 'dplyr', 'fs',
  'ggplot2', 'glue', 'htmltools', 'magrittr', 'rlang', 'sass',
  'scales', 'stringr', 'tibble', 'tidyselect'

Packages suggested but not available for checking:
  'covr', 'knitr', 'paletteer', 'testthat', 'RColorBrewer',
  'lubridate', 'rmarkdown', 'rvest', 'shiny', 'tidyr', 'webshot',
  'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'jsonlite', 'anytime', 'curl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'broom.helpers', 'cli', 'dplyr', 'forcats', 'glue', 'gt',
  'knitr', 'lifecycle', 'purrr', 'rlang', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'broom.mixed', 'car', 'covr', 'effectsize', 'emmeans', 'flextable',
  'geepack', 'GGally', 'Hmisc', 'huxtable', 'insight', 'kableExtra',
  'lme4', 'mice', 'officer', 'parameters', 'parsnip', 'rmarkdown',
  'sandwich', 'scales', 'smd', 'spelling', 'survey', 'testthat',
  'workflows'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'tibble'
Note: found 42384 marked UTF-8 strings
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'httr', 'jsonlite', 'tibble', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'lubridate', 'ggplot2', 'covr',
  'scales', 'readr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Packages suggested but not available for checking:
  'knitr', 'spdep', 'ade4', 'adegraphics', 'adespatial', 'maptools',
  'RColorBrewer', 'corrgram', 'car', 'rmarkdown', 'ggplot2', 'ggrepel',
  'heplots', 'patchwork', 'candisc', 'colorspace'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'reshape2', 'ggplot2', 'lubridate'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rsolnp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rpanel', 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'pracma', 'nloptr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'svglite', 'DT', 'rlang', 'magrittr', 'R6'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Nozzle.R1', 'proftools', 'Rgraphviz', 'graph', 'rstudioapi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'hydroGOF', 'ggplot2', 'lubridate', 'stringr', 'ncdf4',
  'reshape2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'vegan', 'ggplot2', 'matrixStats', 'ape', 'statmod',
  'rmutil', 'dirmult', 'ggrepel', 'lmerTest', 'foreach', 'modeest'

Package suggested but not available for checking: 'ade4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'stringr', 'units', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'seasonal', 'ggplot2', 'data.table', 'zoo', 'x13binary'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'sampling', 'magrittr', 'tibble', 'dplyr',
  'data.table'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'readr', 'purrr', 'urltools', 'stringr', 'lazyeval'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'tidytext', 'ggplot2', 'tidyr',
  'curl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'adaptMCMC', 'xlsx', 'drc', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vars', 'xts', 'lmtest', 'lubridate', 'urca', 'sandwich',
  'strucchange', 'tsDyn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'decompr', 'diagonals'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'eda4treeR', 'lme4', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RColorBrewer', 'ggplot2', 'ggrepel', 'dplyr', 'tidyr', 'data.table',
  'scales'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Biobase', 'snpStats', 'rootSolve', 'limma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'colorspace', 'data.table', 'dplyr', 'ggplot2', 'ggrepel', 'glue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mombf', 'speedglm', 'horseshoe'

Package suggested but not available for checking: 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ini', 'futile.logger', 'data.table', 'hash', 'ggplot2', 'knitr',
  'rmarkdown', 'gridExtra', 'RSQLite', 'kableExtra', 'R.utils'

Package suggested but not available for checking: 'xlsx'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'httr', 'urltools', 'pingr', 'stringr', 'concatenate',
  'dplyr', 'jsonlite', 'purrr', 'tibble', 'glue', 'tidyr',
  'assertthat', 'rlang', 'lubridate', 'plyr', 'testthat', 'progress'

Packages suggested but not available for checking:
  'httptest', 'spelling', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'jsonlite', 'leaflet', 'leaflet.extras', 'magrittr',
  'miniUI', 'nhdplusTools', 'purrr', 'scales', 'sf', 'shiny',
  'shinyWidgets', 'tidyr', 'units', 'promises'

Package suggested but not available for checking: 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'maptools', 'spData', 'spdep', 'GWmodel', 'spgwr',
  'assertthat', 'glogis'

Packages suggested but not available for checking: 'rgdal', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'EnvStats', 'mvtnorm', 'nleqslv', 'fGarch', 'abind', 'foreach',
  'doParallel', 'Renext', 'lmomco'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'sp'

Packages suggested but not available for checking: 'rgdal', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
normalweight: no visible binding for global variable 'NW_above'
normalweight: no visible binding for global variable 'NW_below'
obese: no visible global function definition for 'data'
obese: no visible binding for global variable 'OB_above'
obese: no visible binding for global variable 'OB_below'
overweight: no visible global function definition for 'data'
overweight: no visible binding for global variable 'OW_above'
overweight: no visible binding for global variable 'OW_below'
Undefined global functions or variables:
  NW_above NW_below OB_above OB_below OW_above OW_below data
Consider adding
  importFrom("utils", "data")
to your NAMESPACE file.
Package required but not available: 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'memoise', 'gWidgets2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'doParallel', 'geosphere', 'sp', 'spgwr', 'glmnet', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maptools', 'robustbase', 'sp', 'Rcpp', 'spatialreg', 'spacetime',
  'spdep', 'FNN', 'RcppArmadillo'

Packages suggested but not available for checking:
  'mvoutlier', 'RColorBrewer', 'gstat', 'spData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'sf', 'pracma', 'geodist', 'nsprcomp', 'spData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'golem', 'shiny', 'processx', 'attempt', 'DT', 'glue',
  'htmltools', 'shinydashboard', 'sf', 'dplyr', 'geodist', 'plotly',
  'crosstalk', 'viridis', 'leaflet', 'shinyjs', 'Rcpp', 'corpcor',
  'pkgload'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'sp', 'sf', 'geodist', 'pracma', 'corpcor', 'foreach',
  'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'doParallel', 'dplyr', 'foreach', 'GWmodel',
  'iterators', 'lmtest', 'plm', 'sp'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'rgeos', 'tmap'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'broom', 'rlist', 'reshape2', 'plotROC', 'knitr',
  'kableExtra', 'future', 'future.apply', 'pscl', 'ggrepel', 'cowplot'

Package suggested but not available for checking: 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fields', 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deldir', 'digest', 'geometry', 'Kendall', 'lubridate', 'officer',
  'raster', 'readxl', 'rhandsontable', 'sf', 'shiny',
  'shinycssloaders', 'shinydashboard', 'shinyjs', 'sm', 'sp',
  'splancs', 'zoo'

Packages suggested but not available for checking: 'DBI', 'RSQLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'prodlim', 'RcppArmadillo'

Packages suggested but not available for checking:
  'BinaryDosage', 'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'minqa'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgl', 'Rvcg', 'Morpho', 'purrr', 'cxhull', 'rstudioapi', 'clipr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'trekcolors', 'uniformly', 'arrangements'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'reticulate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'jsonlite'

Packages suggested but not available for checking:
  'ggplot2', 'mlbench', 'slam', 'bit64', 'data.table', 'rgl',
  'plot3Drgl', 'DT', 'IRdisplay', 'htmltools', 'plotly', 'repr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'geojsonsf', 'sf', 'tidyr', 'V8'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'purrr', 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'webshot', 'gapminder',
  'DiagrammeR', 'rstudioapi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'tibble', 'future.apply'

Packages suggested but not available for checking:
  'covr', 'testthat', 'httptest', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'rlang', 'tidyselect', 'tibble', 'zeallot',
  'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'future.apply', 'rlang', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'future', 'ggplot2', 'knitr', 'msigdbr', 'purrr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'copula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'pegas', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numbers', 'openxlsx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'DT', 'ggplot2', 'gsubfn', 'latex2exp',
  'reshape2', 'readr', 'readxl', 'shiny', 'stringr', 'tidyr'

Packages suggested but not available for checking:
  'spelling', 'covr', 'digest', 'gridExtra', 'knitr', 'pander', 'renv',
  'rmarkdown', 'shinycssloaders', 'shinyhelper', 'shinyjs', 'testthat',
  'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'getopt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'dplyr', 'Rcpp', 'R6', 'stringr'

Packages suggested but not available for checking:
  'minpack.lm', 'rhdf5', 'knitr', 'testthat', 'tictoc', 'tikzDevice',
  'hash', 'numDeriv', 'staplr', 'markdown', 'rmarkdown', 'errors'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'ggplot2', 'pander'

Packages suggested but not available for checking:
  'ape', 'dplyr', 'knitr', 'rmarkdown', 'testthat', 'vegan', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'R6', 'readr', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'assertthat', 'origami', 'glmnet', 'data.table', 'stringr',
  'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark', 'future',
  'ggplot2', 'dplyr', 'tidyr', 'SuperLearner'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'ggplot2', 'data.table', 'matrixStats',
  'future.apply', 'assertthat', 'hal9001', 'origami', 'rsample',
  'rlang', 'scales', 'Rdpack'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'stringr', 'covr', 'future'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'scales'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'lme4', 'amap', 'nbpMatching', 'lmerTest', 'xtable', 'Cairo'
Error(s) in re-building vignettes:
--- re-building 'introduction.Rnw' using Sweave
Loading required package: hamlet
Loading required package: xtable
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'xtable'

Error: processing vignette 'introduction.Rnw' failed with diagnostics:
 chunk 5 
Error in xtable(d, caption = "Euclidean distance matrix D for 18 animals",  : 
  could not find function "xtable"

--- failed re-building 'introduction.Rnw'

SUMMARY: processing the following file failed:
  'introduction.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'jsonlite', 'crul', 'xml2', 'urltools', 'mime', 'yaml'

Packages suggested but not available for checking:
  'testthat', 'jsonld', 'data.table', 'bibtex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'caTools', 'devtools', 'knitr', 'mda', 'pkgload', 'rmarkdown',
  'ROCR', 'rprojroot', 'RUnit', 'testthat'
Packages unavailable to check Rd xrefs: 'ROCR', 'caTools'
Running 'runit.R'
Running the tests in 'tests/runit.R' failed.
Complete output:
  > #!/usr/bin/Rscript --vanilla
  > is_failure <- function(result) {
  +     res <- RUnit::getErrors(result)
  +     names(res) <- tolower(names(res)) # soothe lintr
  +     sum_of_exceptions <- res[["nerr"]] + res[["nfail"]]
  +     fail <- as.logical(sum_of_exceptions)
  +     return(fail)
  + }
  > 
  > if (interactive()) {
  +     pkgload::load_all(path = ".") # needed to use pkgload's shim version of
  +     # base's system.file
  +     unit_dir <- system.file("inst", "runit_tests", package = "HandTill2001")
  + } else {
  +     require("HandTill2001", quietly = TRUE, character.only = TRUE) ||
  +         pkgload::load_all(path = ".") # needed to use pkgload's shim version of
  +     r_call <- commandArgs(trailingOnly = FALSE)
  +     if (any(grepl("--file", r_call))) {
  +         unit_dir <- file.path("inst", "runit_tests")
  +     } else {
  +         unit_dir <- system.file("runit_tests", package = "HandTill2001")
  +     }
  + }
  > if (! dir.exists(unit_dir)) {
  +     stop("Can not find RUnit test directory ", unit_dir,
  +          ". Try to (re)install the package first.")
  + }
  > package_suite <- RUnit::defineTestSuite("HandTill2001_unit_test",
  +                                         dirs = unit_dir,
  +                                         testFileRegexp = "^.*\\.[rR]",
  +                                         testFuncRegexp = "^test_+")
  Error in loadNamespace(x) : there is no package called 'RUnit'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Errors in running code in vignettes:
when running code in 'consensus_auc.Rnw'

> options(useFancyQuotes = "UTF-8")

> library(MASS)

> data(fgl)

> set.seed(100)

> ind_train <- sample(nrow(fgl), size = floor(nrow(fgl) * 
+     0.7), replace = FALSE)

> ind_eval <- setdiff(seq(1:nrow(fgl)), ind_train)

> library(rpart)

> set.seed(123)

> fgl_rpart <- rpart(type ~ ., data = fgl[ind_train, 
+     TRUE], parms = list(split = "information"))

> newcp <- max(fgl_rpart$cptable[, "CP"] * as.numeric(fgl_rpart$cptable[TRUE, 
+     "xerror"] < sum(fgl_rpart$cptable[dim(fgl_rpart$cptable)[1], 
+   .... [TRUNCATED] 

> fgl_rpart_pruned <- prune(fgl_rpart, cp = newcp)

> library(nnet)

> fgl_multinom <- multinom(type ~ ., data = fgl[ind_train, 
+     TRUE], trace = FALSE)

> library(mda)

  When sourcing ‘consensus_auc.R’:
Error: there is no package called ‘mda’
Execution halted

  'consensus_auc.Rnw' using 'UTF-8'... failed
Error(s) in re-building vignettes:
--- re-building 'consensus_auc.Rnw' using Sweave

Error: processing vignette 'consensus_auc.Rnw' failed with diagnostics:
 chunk 5 
Error in library(mda) : there is no package called ‘mda’

--- failed re-building ‘consensus_auc.Rnw’

SUMMARY: processing the following file failed:
  ‘consensus_auc.Rnw’

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'Rcpp', 'ggplot2', 'igraph', 'png', 'reshape2', 'stringr', 'rjson',
  'magick', 'shiny', 'randomForest', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'dplyr', 'tibble', 'lubridate', 'tidyr', 'snakecase'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
EMvar: no visible global function definition for 'model.matrix'
RecodeHaplos: no visible global function definition for 'na.omit'
RecodeHaplos: no visible global function definition for 'tail'
anova.hapassoc: no visible global function definition for 'pchisq'
handleMissings: no visible global function definition for 'na.omit'
hapassoc: no visible global function definition for 'binomial'
hapassoc: no visible global function definition for 'formula'
hapassoc: no visible global function definition for 'glm'
hapassoc : <anonymous>: no visible global function definition for 'glm'
hapassoc: no visible global function definition for 'model.frame'
hapassoc: no visible global function definition for 'model.matrix'
hapassoc: no visible binding for global variable 'contrasts'
hapassoc: no visible global function definition for 'glm.control'
hapassoc : <anonymous>: no visible global function definition for
  'glm.control'
probY: no visible global function definition for 'dbinom'
probY: no visible global function definition for 'dpois'
probY: no visible global function definition for 'dnorm'
probY: no visible global function definition for 'dgamma'
summary.hapassoc: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  binomial contrasts dbinom dgamma dnorm dpois formula glm glm.control
  model.frame model.matrix na.omit pchisq tail
Consider adding
  importFrom("stats", "binomial", "contrasts", "dbinom", "dgamma",
             "dnorm", "dpois", "formula", "glm", "glm.control",
             "model.frame", "model.matrix", "na.omit", "pchisq")
  importFrom("utils", "tail")
to your NAMESPACE file.
allele.marq: no visible global function definition for 'na.omit'
depart.LDL: no visible global function definition for 'aov'
freq.all: no visible global function definition for 'na.omit'
hapim.LD.add: no visible global function definition for 'optim'
hapim.LDL.add: no visible global function definition for 'optim'
obj.haplomax.HS.add: no visible global function definition for 'aov'
obj.haplomax.add: no visible global function definition for 'aov'
vrais.LD.add: no visible global function definition for 'dnorm'
vrais.LDL.add.pere: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  aov dnorm na.omit optim
Consider adding
  importFrom("stats", "aov", "dnorm", "na.omit", "optim")
to your NAMESPACE file.
Packages required but not available: 'HMM', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ff', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'Rmpi', 'ggplot2', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'XML', 'tibble', 'RUnit', 'plyr', 'DT', 'RCurl', 'RJSONIO'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'openxlsx'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'pedigree'
AssignQTL : <anonymous>: no visible global function definition for
  'rgamma'
AssignSingleQTL: no visible global function definition for 'rgamma'
ListQTL : <anonymous>: no visible global function definition for
  'rgamma'
SampleBaseHaplotype: no visible global function definition for 'runif'
SampleHaplotype: no visible global function definition for 'rpois'
SampleHaplotype: no visible global function definition for 'runif'
SampleHaplotype: no visible global function definition for 'rbinom'
Undefined global functions or variables:
  rbinom rgamma rpois runif
Consider adding
  importFrom("stats", "rbinom", "rgamma", "rpois", "runif")
to your NAMESPACE file.
Package unavailable to check Rd xrefs: 'pedigree'
Packages required but not available: 'arsenal', 'rms'

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'network', 'sna', 'ape', 'phangorn', 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'dplyr', 'httr', 'magrittr', 'sf', 'stars', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'DT', 'knitr', 'rmarkdown', 'testthat', 'tmap', 'vcr',
  'webmockr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'glue', 'rlang', 'tibble', 'vctrs'

Packages suggested but not available for checking:
  'covr', 'crayon', 'devtools', 'knitr', 'modeldata', 'recipes',
  'rmarkdown', 'roxygen2', 'testthat', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mice', 'Rsolnp', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'xts', 'zoo', 'sandwich', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'FMStable'

Packages suggested but not available for checking:
  'knitr', 'ape', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/vignette.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/vignette.Rnw'
(Is a VignetteBuilder field missing?)
Skipping vignette re-building
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'Rcpp', 'dplyr', 'cowplot', 'tidyr', 'ggplot2', 'irlba', 'tibble',
  'rlang', 'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'Seurat', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'ggtree', 'magrittr', 'lazyeval', 'dplyr', 'tidyr', 'rlang'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gridExtra'

Packages suggested but not available for checking: 'hexbin', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'magrittr', 'jsonlite', 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'covr', 'httr', 'shiny', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'testthat'
Running 'accessors.R'
Running the tests in 'tests/accessors.R' failed.
Complete output:
  > library(hash)
  hash-2.2.6.2 provided by Decision Patterns
  
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'tinytest'
Packages required but not available: 'Rgraphviz', 'graph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forcats', 'hms', 'readr', 'rlang', 'tibble', 'tidyselect', 'vctrs',
  'cpp11'

Packages suggested but not available for checking:
  'cli', 'covr', 'crayon', 'fs', 'knitr', 'pillar', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'nloptr', 'RcppArmadillo', 'BH'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ahaz', 'rootSolve', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'jpeg', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running examples in 'hazer-Ex.R' failed
The error most likely occurred in:

> ### Name: getBrightness
> ### Title: The brighness map of an image (0 to 1).
> ### Aliases: getBrightness
> 
> ### ** Examples
> 
> library(jpeg)
Error in library(jpeg) : there is no package called 'jpeg'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'reshape2'

Packages suggested but not available for checking: 'ggplot2', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'loo', 'ggplot2', 'data.table', 'BH', 'RcppEigen',
  'StanHeaders'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R2jags'

Packages suggested but not available for checking:
  'ggplot2', 'gridExtra', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'bayesm', 'sns', 'MfUSampler'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'mcmcsae', 'survey', 'knitr', 'hypergeo', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'fBasics', 'maps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 104392 marked UTF-8 strings
PoincarePlot: no visible global function definition for 'lines'
PoincarePlot: no visible global function definition for 'lowess'
hctest: no visible global function definition for 'cor.test'
rdplot: no visible global function definition for 'lines'
rdplot: no visible global function definition for 'lowess'
rdplot: no visible global function definition for 'rgb'
simer: no visible global function definition for 'runif'
simer: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  cor.test lines lowess rgb rnorm runif
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "lines")
  importFrom("stats", "cor.test", "lowess", "rnorm", "runif")
to your NAMESPACE file.
Packages required but not available:
  'randnet', 'RSpectra', 'irlba', 'data.tree', 'data.table', 'stringr',
  'dendextend'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'magrittr', 'dplyr', 'shiny', 'colourpicker'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'ggplot2'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdpack', 'diversitree', 'mvtnorm', 'flexsurv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'clinfun', 'GenBinomApps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'harmonicmeanp', 'ncvreg', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BLSM', 'geometry', 'M3C', 'rgeos', 'sp'

Packages suggested but not available for checking:
  'alphahull', 'knitr', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'e1071'

Packages suggested but not available for checking: 'mvtnorm', 'klaR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'iterators', 'doParallel', 'RcppArmadillo'

Package suggested but not available for checking: 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'bigstatsr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'slam', 'foreach', 'iterators', 'doParallel', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rARPACK'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppProgress', 'Rtsne'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'multtest'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/QUICKhddplot.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'fst', 'readr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'bit64'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'nycflights13', 'reshape2',
  'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'bit64', 'knitr', 'ggplot2', 'microbenchmark', 'testthat',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'missRanger', 'plyr', 'purrr', 'magrittr', 'tibble', 'dplyr',
  'tidyselect', 'missForest', 'tidyverse', 'usethis'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'coda'
Packages required but not available: 'scalreg', 'glmnet', 'linprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'NPCirc', 'circular', 'rgl', 'Directional', 'movMF'

Packages suggested but not available for checking:
  'ggplot2', 'maps', 'mapproj'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'abind'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'psych'

Package suggested but not available for checking: 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'ggplot2', 'Rdpack', 'Rcpp', 'Rglpk', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr', 'tidyr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'ggplot2', 'checkmate', 'Formula'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'xtable', 'mvtnorm'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/hdm.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fdrtool', 'qvalue'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'penalized', 'ncvreg', 'foreach', 'survAUC', 'ggplot2',
  'gridExtra'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'doParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FNN', 'FactoMineR', 'mclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rtkore', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'locfit', 'ash', 'ks', 'ggplot2', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'EstimDiagnostics', 'corpcor', 'waldo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'purrr', 'matrixStats', 'SpatialNP', 'sp', 'DT',
  'TeachingDemos', 'plotrix', 'fmsb', 'rgdal', 'swfscMisc', 'rgeos',
  'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tensor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'mvtnorm', 'foreach', 'doParallel', 'expm', 'fastclime',
  'clime'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'clime', 'sandwich', 'RcppEigen'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
coef.HDtweedie: no visible global function definition for 'rbind2'
coef.cv.HDtweedie: no visible global function definition for 'coef'
cv.tweediegrppath: no visible global function definition for 'predict'
cv.tweediegrppath: no visible binding for global variable
  'weighted.mean'
cvcompute: no visible binding for global variable 'weighted.mean'
error.bars: no visible global function definition for 'segments'
lambda.interp: no visible global function definition for 'approx'
plot.HDtweedie: no visible global function definition for 'par'
plot.HDtweedie: no visible binding for global variable 'plot.default'
plot.HDtweedie: no visible global function definition for 'gray.colors'
plot.HDtweedie: no visible global function definition for 'abline'
plot.cv.HDtweedie: no visible global function definition for 'points'
plot.cv.HDtweedie: no visible global function definition for 'axis'
plot.cv.HDtweedie: no visible global function definition for 'abline'
predict.HDtweedie: no visible global function definition for 'rbind2'
predict.HDtweedie: no visible global function definition for 'cbind2'
predict.cv.HDtweedie: no visible global function definition for
  'predict'
Undefined global functions or variables:
  abline approx axis cbind2 coef gray.colors par plot.default points
  predict rbind2 segments weighted.mean
Consider adding
  importFrom("grDevices", "gray.colors")
  importFrom("graphics", "abline", "axis", "par", "plot.default",
             "points", "segments")
  importFrom("methods", "cbind2", "rbind2")
  importFrom("stats", "approx", "coef", "predict", "weighted.mean")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Packages required but not available:
  'caret', 'cowplot', 'data.table', 'dplyr', 'e1071', 'generics',
  'ggplot2', 'glmnet', 'lubridate', 'MLmetrics', 'purrr', 'ranger',
  'recipes', 'rlang', 'ROCR', 'stringr', 'tibble', 'tidyr', 'xgboost'

Packages suggested but not available for checking:
  'covr', 'DBI', 'dbplyr', 'lintr', 'odbc', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'readr', 'scales', 'shiny', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'rlang', 'broom', 'ggrepel', 'tibble', 'dplyr',
  'ggplot2', 'tidyr', 'forcats', 'recipes', 'purrr', 'h2o'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'roxygen2', 'tidyquant', 'healthyR.data',
  'scales', 'tidyselect', 'janitor', 'timetk', 'plotly', 'rsample'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'rlang', 'tibble', 'timetk', 'ggplot2', 'dplyr',
  'lubridate', 'purrr', 'stringr', 'writexl', 'cowplot', 'scales',
  'sqldf', 'tidyr', 'ggrepel', 'plotly'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2', 'pacman', 'healthyR.data', 'broom',
  'tidyquant', 'uwot', 'tidyselect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'rlang', 'tibble', 'timetk', 'tidyr', 'tidyquant',
  'dplyr', 'purrr', 'ggplot2', 'lubridate', 'plotly', 'recipes',
  'modeltime', 'cowplot', 'forcats', 'stringi', 'parsnip',
  'workflowsets', 'earth'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2', 'scales', 'rsample',
  'healthyR.data', 'stringr', 'forecast', 'tidymodels', 'glue', 'xts',
  'zoo', 'TSA', 'tune', 'dials', 'workflows', 'tidyselect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'healthyR', 'healthyR.data', 'healthyR.ts', 'healthyR.ai',
  'TidyDensity', 'dplyr', 'purrr', 'tibble', 'magrittr', 'rlang',
  'crayon', 'rstudioapi', 'cli'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aws.s3', 'curl', 'dplyr', 'fs', 'magrittr', 'rlang', 'scales'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
Package required but not available: 'fastcluster'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Biobase', 'Heatplus', 'RColorBrewer'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plotly', 'viridis', 'ggplot2', 'dendextend', 'magrittr', 'reshape2',
  'scales', 'seriation', 'colorspace', 'RColorBrewer', 'htmlwidgets',
  'webshot', 'assertthat', 'egg'

Packages suggested but not available for checking:
  'knitr', 'covr', 'gplots', 'tidyselect', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'ggplot2', 'lubridate', 'plyr', 'Rcpp',
  'RcppRoll', 'tibble', 'RcppArmadillo'

Packages suggested but not available for checking:
  'doParallel', 'covr', 'ggpubr', 'knitr', 'ncdf4', 'rerddap',
  'rmarkdown', 'testthat', 'tidync', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'sampleSelection', 'MomTrunc', 'PerformanceAnalytics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'zoo', 'lubridate', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'utf8', 'yaml'

Packages suggested but not available for checking:
  'covr', 'here', 'rmarkdown', 'roxygen2', 'testthat', 'dplyr',
  'tidyr', 'nycflights13', 'ggplot2', 'knitr', 'purrr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'testthat', 'rlang'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lazyeval', 'memoise', 'mvnfast', 'plyr', 'pryr',
  'tibble', 'rlang', 'purrr'

Packages suggested but not available for checking:
  'BCEA', 'diagram', 'flexsurv', 'knitr', 'logitnorm', 'lpSolve',
  'optimx', 'readxl', 'rgho', 'rmarkdown', 'stringr', 'testthat',
  'triangle', 'magrittr', 'cli'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'hutils', 'magrittr', 'fastmatch', 'bit64', 'lubridate'

Packages suggested but not available for checking: 'testthat', 'fst'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'sqldf', 'stringr', 'rlang'

Packages suggested but not available for checking:
  'devtools', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ggforce', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'energy', 'FNN', 'orthopolynom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'rvest', 'httr', 'magrittr', 'plyr', 'taxize'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'coda'

Packages suggested but not available for checking:
  'RNetCDF', 'ncdf4', 'maps', 'fields', 'shiny', 'ppcor', 'pbmcapply',
  'pbapply', 'visNetwork', 'igraph', 'shinyWidgets', 'cranlogs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'purrr', 'xml2', 'dplyr', 'sf', 'httpcache',
  'curl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'remotes', 'ggplot2', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'graph', 'RBGL', 'precrec', 'preprocessCore', 'plyr', 'foreach',
  'doParallel'

Packages suggested but not available for checking: 'Rgraphviz', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'car'

Packages suggested but not available for checking:
  'rgl', 'candisc', 'effects', 'reshape', 'gplots', 'reshape2',
  'corrgram', 'animation', 'mvinfluence'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rprojroot'

Packages suggested but not available for checking:
  'conflicted', 'covr', 'fs', 'knitr', 'palmerpenguins', 'plyr',
  'readr', 'rlang', 'rmarkdown', 'testthat', 'uuid', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'curl', 'data.table', 'flexpolyline', 'jsonlite', 'sf',
  'stringr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'htmlwidgets', 'knitr', 'leafpop', 'lwgeom',
  'mapview', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ergm', 'latentnet', 'mcgibbsit', 'network', 'sna', 'mlergm', 'Rcpp',
  'igraph', 'intergraph', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'synbreed'
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'cplm', 'DESeq2', 'lme4', 'pbapply', 'tweedie',
  'SummarizedExperiment'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'maxLik'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'testthat', 'magrittr', 'knitr', 'rmarkdown', 'dplyr', 'data.table',
  'ggplot2', 'DT', 'mvtnorm', 'patchwork'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'optimx', 'pbapply', 'rgeos', 'sp', 'fields'

Packages suggested but not available for checking:
  'autoimage', 'devtools', 'fda', 'igraph', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'flexsurv', 'ggplot2', 'msm', 'Rcpp', 'R6',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'kableExtra', 'knitr', 'magrittr', 'mstate', 'numDeriv',
  'pracma', 'rmarkdown', 'scales', 'testthat', 'truncnorm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'igraph'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'DiceDesign'

Packages suggested but not available for checking:
  'knitr', 'monomvn', 'lhs', 'colorspace'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/hetGP_vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R2jags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rsurrogate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'plyr', 'mvtnorm', 'foreach', 'doParallel', 'moments',
  'formula.tools', 'purrr', 'dplyr', 'tidyverse'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'Cairo', 'checkmate', 'lubridate', 'dplyr', 'knitr', 'testthat',
  'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Hmisc'

Packages suggested but not available for checking:
  'devtools', 'ggplot2', 'glmnet', 'knitr', 'plyr', 'reshape',
  'reshape2', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bupaR', 'processmapR', 'rlang', 'magrittr', 'dplyr', 'tidyr',
  'DiagrammeR', 'petrinetR', 'purrr', 'scales', 'Rcpp', 'ggplot2',
  'ggthemes', 'data.table', 'stringr', 'BH'

Packages suggested but not available for checking:
  'eventdataR', 'svgPanZoom', 'DiagrammeRsvg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'marray', 'affy', 'Biobase', 'limma', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'limma'
Errors in running code in vignettes:
when running code in 'hexagon_binning.Rnw'
Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  'hexagon_binning.Rnw'... failed to complete the test
Packages required but not available:
  'ggimage', 'ggplot2', 'hexbin', 'showtext', 'sysfonts'

Package suggested but not available for checking: 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'seqinr', 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'hexbin', 'FNN'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RcppArmadillo', 'quadprog', 'dendextend', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glasso', 'mvtnorm', 'igraph', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'hglm.data'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'genscore'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'deSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'hms', 'httr', 'jsonlite', 'lubridate', 'magrittr', 'purrr',
  'readr', 'rlang', 'rvest', 'stringr', 'tibble'

Package suggested but not available for checking: 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'crayon', 'dplyr', 'limSolve', 'magrittr', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'hash', 'DiagrammeR', 'ggplot2', 'DiagrammeRsvg',
  'captioner', 'rsvg', 'bookdown'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'rmarkdown'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'surveillance'

Packages suggested but not available for checking:
  'gridExtra', 'scales', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'latticeExtra', 'multcomp', 'gridExtra', 'reshape2', 'leaps', 'vcd',
  'colorspace', 'RColorBrewer', 'shiny', 'Hmisc', 'abind', 'Rmpfr'

Packages suggested but not available for checking:
  'mvtnorm', 'car', 'Rcmdr', 'RcmdrPlugin.HH', 'TeachingDemos',
  'microplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CMAPSS', 'mvtnorm', 'Rcpp', 'Rdpack', 'mice', 'cpr', 'psych',
  'progress', 'magic', 'splines2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'EMD', 'fields', 'spatstat.geom', 'spatstat.core', 'spatstat.linnet',
  'spatstat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bigmemory', 'Rcpp', 'RcppArmadillo', 'RcppProgress', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GenomicRanges', 'glmnet', 'rtracklayer', 'IRanges', 'GenomeInfoDb'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ncdf4'

Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'rmarkdown', 'roxygen2', 'spelling',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'truncnorm', 'mvtnorm', 'coda', 'xtable', 'mc2d', 'ggplot2', 'rgeos',
  'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggdendro', 'ggplot2', 'Rcpp', 'scales', 'RColorBrewer', 'gtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
banded: no visible global function definition for 'toeplitz'
gpband: no visible global function definition for 'toeplitz'
hierband.cv: no visible global function definition for 'cov'
hierband.cv: no visible binding for global variable 'sd'
subdiag.thresh: no visible global function definition for 'uniroot'
subdiag.thresh: no visible global function definition for 'toeplitz'
Undefined global functions or variables:
  cov sd toeplitz uniroot
Consider adding
  importFrom("stats", "cov", "sd", "toeplitz", "uniroot")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'glmnet', 'hdi', 'SIHR'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/vignette-hierbase.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'irlba'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GGally', 'adegenet', 'diveRsity', 'entropart', 'mmod', 'ggplot2',
  'hierfstat', 'reshape2', 'tibble', 'ade4', 'vegan', 'ape', 'pegas',
  'permute'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ade4', 'adegenet', 'gaston', 'gtools'

Packages suggested but not available for checking:
  'ape', 'pegas', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gtools', 'betareg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fastcluster', 'RiskPortfolios'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'locfit', 'lbfgs', 'numDeriv', 'optimx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
compute.contrasts: no visible binding for global variable 'sd'
compute.contrasts: no visible global function definition for 'cor'
compute.contrasts: no visible global function definition for 'sd'
plot.hiertest: no visible global function definition for 'legend'
Undefined global functions or variables:
  cor legend sd
Consider adding
  importFrom("graphics", "legend")
  importFrom("stats", "cor", "sd")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
'library' or 'require' calls to packages already attached by Depends:
  'nnet' 'stats'
  Please remove these calls from your code.
Package in Depends field not imported from: 'nnet'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Packages required but not available:
  'htmlwidgets', 'magrittr', 'purrr', 'rlist', 'assertthat', 'zoo',
  'dplyr', 'tibble', 'stringr', 'broom', 'xts', 'quantmod', 'tidyr',
  'htmltools', 'jsonlite', 'igraph', 'lubridate', 'yaml', 'rlang',
  'rjson'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'httr', 'viridisLite', 'shiny',
  'gapminder', 'forecast', 'geojsonio', 'testthat', 'covr', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fastclime'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RMallow'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'zoo', 'Rcpp', 'robustbase', 'data.table', 'RcppRoll',
  'quantmod', 'sandwich', 'numDeriv', 'Rsolnp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'mvtnorm', 'covr', 'FKF', 'BMS', 'rugarch', 'testthat', 'knitr',
  'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'shiny', 'testthat', 'dplyr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'highlightHTML-Ex.R' failed
The error most likely occurred in:

> ### Name: table_id_inject
> ### Title: Table hash addition for markup
> ### Aliases: table_id_inject
> 
> ### ** Examples
> 
> library(dplyr)
Error in library(dplyr) : there is no package called 'dplyr'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'mvtnorm', 'mnormt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mlr3', 'mlr3proba', 'mlr3learners', 'gtools', 'tibble', 'dplyr',
  'coxme', 'missForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fields', 'rgeos', 'spatstat', 'mvtnorm', 'ks', 'deldir', 'maps',
  'spatstat.random', 'spatstat.geom', 'spatstat.core'

Package suggested but not available for checking: 'INLA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xfun'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'testit'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gplots'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/highSCREENmanual.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'colorfulVennPlot'
Packages required but not available:
  'gcdnet', 'gglasso', 'purrr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'entropy'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'dplyr', 'tidyr', 'reshape2',
  'bodenmiller', 'abind'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'haven', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'scales', 'ggpubr', 'RColorBrewer', 'data.table', 'ape',
  'vegan', 'geiger', 'qgraph', 'FSA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'plyr'
Malformed Description field: should contain one or more complete sentences.
occupancy: no visible global function definition for 'quantile'
Undefined global functions or variables:
  quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Running examples in 'hillmakeR-Ex.R' failed
The error most likely occurred in:

> ### Name: occupancy
> ### Title: occupancy
> ### Aliases: occupancy
> 
> ### ** Examples
> 
> library(plyr) # need ddply
Error in library(plyr) : there is no package called 'plyr'
Execution halted
Packages required but not available:
  'FD', 'plyr', 'ade4', 'ape', 'tibble', 'geiger'

Packages suggested but not available for checking:
  'testthat', 'covr', 'betapart'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'rayshader', 'scales'

Package suggested but not available for checking: 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
data_simu: no visible global function definition for 'runif'
data_simu: no visible global function definition for 'rbinom'
data_simu: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  rbinom rnorm runif
Consider adding
  importFrom("stats", "rbinom", "rnorm", "runif")
to your NAMESPACE file.
Packages required but not available:
  'cppRouting', 'data.table', 'dplyr', 'geosphere', 'ggplot2',
  'lwgeom', 'purrr', 's2', 'sf', 'tidyr'

Packages suggested but not available for checking:
  'airportr', 'cowplot', 'knitr', 'progress', 'rmarkdown',
  'rnaturalearthdata', 'scales', 'stringr', 'testthat', 'units',
  'viridis', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ncvreg', 'glmnet', 'HDMT', 'hommel', 'iterators', 'foreach',
  'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'ggplot2', 'purrr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'R6', 'rlang', 'tibble', 'BH'

Packages suggested but not available for checking:
  'dplyr', 'readr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
arms: no visible global function definition for 'rnorm'
rballunif: no visible global function definition for 'rnorm'
rballunif: no visible global function definition for 'runif'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Packages required but not available:
  'plyr', 'openxlsx', 'InterpretMSSpectrum', 'Rdisop', 'beeswarm',
  'Biobase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pryr', 'rms', 'ltm'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'deSolve', 'GenSA', 'subplex', 'nloptr', 'phytools',
  'data.table', 'igraph', 'diversitree', 'paleotree', 'plotrix',
  'geiger', 'phangorn', 'TreeSim', 'corHMM'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'gtools', 'maps', 'ggplot2', 'scales', 'proto', 'reshape', 'plyr',
  'jpeg', 'car', 'gplots', 'sp', 'heplots', 'knitr', 'rmarkdown',
  'effects', 'lubridate', 'gridExtra', 'vcd'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages unavailable to check Rd xrefs: 'Guerry', 'alr4', 'agridat', 'coin'
Running examples in 'HistData-Ex.R' failed
The error most likely occurred in:

> ### Name: CushnyPeebles
> ### Title: Cushny-Peebles Data: Soporific Effects of Scopolamine
> ###   Derivatives
> ### Aliases: CushnyPeebles CushnyPeeblesN
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(CushnyPeebles)
> # quick looks at the data
> plot(CushnyPeebles)
> boxplot(CushnyPeebles, ylab="Hours of Sleep", xlab="Treatment")
> 
> ##########################
> # Repeated measures MANOVA
> 
> CPmod <- lm(cbind(Control, L_hyoscyamine, L_hyoscine, DL_hyoscine) ~ 1, data=CushnyPeebles)
> 
> # Assign within-S factor and contrasts
> Treatment <- factor(colnames(CushnyPeebles), levels=colnames(CushnyPeebles))
> contrasts(Treatment) <- matrix(
+ 	c(-3, 1, 1, 1,
+ 	   0,-2, 1, 1,
+ 	   0, 0,-1, 1), ncol=3)
> colnames(contrasts(Treatment)) <- c("Control.Drug", "L.DL", "L_hy.DL_hy")
> 
> Treats <- data.frame(Treatment)
> if (require(car)) {
+ (CPaov <- Anova(CPmod, idata=Treats, idesign= ~Treatment))
+ }
Loading required package: car
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'car'
> summary(CPaov, univariate=FALSE)
Error in summary(CPaov, univariate = FALSE) : object 'CPaov' not found
Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'FactoMineR', 'ggplot2', 'ggridges', 'histogram', 'Rcpp',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'ash', 'stringr'

Packages suggested but not available for checking:
  'RUnit', 'emdist', 'gdata'

Package which this enhances but not available for checking: 'RProtoBuf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'ggplot2'
Packages required but not available:
  'fastdigest', 'evaluate', 'roprov', 'CodeDepends'

Packages suggested but not available for checking:
  'rmarkdown', 'trackr', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/vignette2.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rcdd'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'glmnet', 'speedglm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'XML'

Package which this enhances but not available for checking: 'HadoopStreaming'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'jpeg', 'png', 'RColorBrewer', 'rgl'

Packages suggested but not available for checking:
  'FuncMap', 'knitr', 'sna', 'xtable', 'bipartite', 'rmarkdown', 'tint'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'ggplot2', 'ggpubr', 'dplyr', 'reshape2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fst'

Packages suggested but not available for checking: 'dplyr', 'tidyr', 'here'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'RCurl', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'gtools'

Packages suggested but not available for checking: 'ltsa', 'FGN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'devtools', 'usethis', 'tidyverse', 'dplyr', 'reshape2',
  'schoolmath', 'tibble', 'stringr', 'purrr', 'tidyr', 'readr', 'here',
  'readxlsb'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'glue', 'purrr', 'stringr', 'curl', 'usethis',
  'urltools'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'reshape2', 'dplyr', 'magrittr', 'stringr',
  'purrr', 'tibble', 'tidyselect', 'janitor', 'Rcpp', 'rlang',
  'ggrepel', 'diagonals', 'RcppArmadillo'

Packages suggested but not available for checking:
  'mlmRev', 'WWGbook', 'lme4', 'testthat', 'knitr', 'rmarkdown', 'car',
  'gridExtra', 'qqplotr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'igraph', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bayesplot', 'mvtnorm'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'lme4', 'carData', 'mlbench', 'ggplot2',
  'mlmRev', 'testthat', 'MCMCpack'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'XML', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Packages required but not available:
  'rgl', 'glmnet', 'nat', 'binaryLogic', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom.mixed', 'coda', 'linLIR', 'lme4', 'MCMCglmm', 'mice', 'msm',
  'mvtnorm', 'ordinal', 'pbivnorm', 'rlang', 'tmvtnorm'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'ggplot2', 'latticeExtra', 'gtable', 'gridExtra',
  'data.table', 'htmlTable', 'viridis', 'htmltools', 'base64enc'

Packages suggested but not available for checking:
  'acepack', 'chron', 'rms', 'mice', 'tables', 'knitr', 'plotly',
  'rlang', 'plyr', 'VGAM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RSpectra', 'BH'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bnlearn', 'mhsmm', 'MCMCpack', 'Rgraphviz', 'graph'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
baumwelchcont: no visible global function definition for 'dnorm'
hmmcontSimul: no visible global function definition for 'rnorm'
hmmcontSimul: no visible global function definition for 'rbinom'
plot.ContObservHMM: no visible global function definition for 'lines'
statesDistributionsPlot: no visible global function definition for
  'dnorm'
statesDistributionsPlot: no visible global function definition for 'sd'
statesDistributionsPlot: no visible global function definition for
  'lines'
statesDistributionsPlot: no visible global function definition for
  'legend'
summary.ContObservHMM: no visible global function definition for 'sd'
Undefined global functions or variables:
  dnorm legend lines rbinom rnorm sd
Consider adding
  importFrom("graphics", "legend", "lines")
  importFrom("stats", "dnorm", "rbinom", "rnorm", "sd")
to your NAMESPACE file.
Packages required but not available:
  'matrixcalc', 'mvtnorm', 'foreach', 'doParallel', 'copula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'HMM'
Packages required but not available: 'Rcpp', 'Rdpack', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'ellipse'

Package suggested but not available for checking: 'HiddenMarkov'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'HiddenMarkov', 'mclust', 'mvtnorm', 'MCMCpack', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'mvtnorm', 'nleqslv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'depmixS4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dirmult', 'ggplot2', 'foreach', 'doParallel', 'vegan', 'gplots',
  'rpart.plot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'HMP', 'dirmult', 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'abind', 'ape', 'BayesLogit', 'fields', 'FNN', 'ggplot2',
  'matrixStats', 'MCMCpack', 'rlang', 'pracma', 'pROC', 'sp',
  'statmod', 'truncnorm'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'corrplot'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ellipsis', 'lifecycle', 'pkgconfig', 'rlang', 'vctrs'

Packages suggested but not available for checking:
  'crayon', 'lubridate', 'pillar', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'hms'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'NMF', 'oro.nifti', 'nnls', 'rasterImage'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'lme4', 'gamlss', 'gamlss.dist', 'pscl', 'aods3', 'VGAM', 'glmmADMB',
  'latticeExtra'
Running examples in 'hnp-Ex.R' failed
The error most likely occurred in:

> ### Name: cbb
> ### Title: Coffee berry borer trapping data
> ### Aliases: cbb
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(cbb)
> # exploratory plot
> require(latticeExtra)
Loading required package: latticeExtra
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'latticeExtra'
> trellis.par.set(strip.background=list(col="lightgrey"))
Error in trellis.par.set(strip.background = list(col = "lightgrey")) : 
  could not find function "trellis.par.set"
Execution halted
Package required but not available: 'statmod'

Package suggested but not available for checking: 'csampling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bamsignals', 'Biostrings', 'data.table', 'GenomicRanges',
  'GenomicTools.fileHandler', 'httr', 'IRanges', 'knitr', 'R.utils',
  'RCurl', 'rmarkdown', 'Rsamtools', 'S4Vectors', 'seqinr', 'stringr',
  'XML'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'rappdirs', 'digest'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'readr', 'dplyr', 'tidyr', 'patchwork',
  'scales', 'rvest', 'tibble'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'spelling', 'viridisLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MplusAutomation', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'purrr', 'rlang', 'assertthat'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'mice', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'plyr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'purrr', 'readr', 'R.utils'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'gmp', 'sodium'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'data.table', 'dplyr', 'furrr', 'future', 'glue', 'janitor',
  'jsonlite', 'magrittr', 'progressr', 'Rcpp', 'RcppParallel', 'rlang',
  'rvest', 'stringr', 'tidyr', 'usethis'

Packages suggested but not available for checking:
  'crayon', 'curl', 'DBI', 'ggplot2', 'ggrepel', 'httr', 'purrr', 'qs',
  'rmarkdown', 'RSQLite', 'stringi', 'testthat', 'tibble', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pastecs', 'ggplot2'

Packages suggested but not available for checking:
  'endtoend', 'Opportunistic'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'survey', 'Rcpp', 'Rdpack', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'usethis', 'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'donut', 'pdist', 'RANN'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spatstat.data', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'orthopolynom', 'quantmod', 'rsm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
hornpa: no visible global function definition for 'rnorm'
hornpa: no visible global function definition for 'cor'
hornpa: no visible global function definition for 'quantile'
Undefined global functions or variables:
  cor quantile rnorm
Consider adding
  importFrom("stats", "cor", "quantile", "rnorm")
to your NAMESPACE file.
Package required but not available: 'msm'

Packages suggested but not available for checking: 'pgdraw', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'Hmisc', 'ggplot2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'horseshoe-Ex.R' failed
The error most likely occurred in:

> ### Name: HS.normal.means
> ### Title: The horseshoe prior for the sparse normal means problem
> ### Aliases: HS.normal.means
> 
> ### ** Examples
> 
> #Empirical Bayes example with 20 signals, rest is noise
> #Posterior mean for the signals is plotted
> #And variable selection is performed using the credible intervals
> #And the credible intervals are plotted
> truth <- c(rep(0, 80), rep(8, 20))
> data <-  truth + rnorm(100, 1)
> tau.hat <- HS.MMLE(data, Sigma2 = 1)
> res.HS1 <- HS.normal.means(data, method.tau = "fixed", tau = tau.hat,
+ method.sigma = "fixed", Sigma2 = 1)
[1] 1000
[1] 2000
[1] 3000
[1] 4000
[1] 5000
[1] 6000
> #Plot the posterior mean against the data (signals in blue)
> plot(data, res.HS1$BetaHat, col = c(rep("black", 80), rep("blue", 20)))
> #Find the selected betas (ideally, the last 20 are equal to 1)
> HS.var.select(res.HS1, data, method = "intervals")
  [1] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
 [38] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0
 [75] 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
> #Plot the credible intervals
> library(Hmisc)
Error in library(Hmisc) : there is no package called 'Hmisc'
Execution halted
Packages required but not available: 'magrittr', 'stringr', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'checkmate', 'plyr', 'purrr', 'tippy'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'mice', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'mitools', 'miceadds', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'FactoMineR', 'ggforce', 'ggplot2', 'lifecycle', 'magrittr',
  'purrr', 'tibble'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'markdown', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ineq'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny', 'colourpicker'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggplot2', 'mvtnorm', 'titanic', 'sampleSelection', 'GA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'corpcor', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'multicool', 'partitions'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'lubridate', 'robustbase', 'ggplot2',
  'imputeTS', 'purrr', 'forecast', 'gridExtra', 'rlang', 'plyr', 'zoo',
  'ranger', 'pdp'

Packages suggested but not available for checking:
  'markdown', 'testthat', 'covr', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'testthat', 'fields', 'ranger', 'distrEx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rgraphviz', 'functional', 'magrittr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
bracket: no visible global function definition for 'segments'
Undefined global functions or variables:
  segments
Consider adding
  importFrom("graphics", "segments")
to your NAMESPACE file.
Packages required but not available:
  'ggplot2', 'scales', 'extrafont', 'knitr', 'rmarkdown', 'htmltools',
  'magrittr', 'gdtools'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'gridExtra', 'hunspell', 'stringi', 'gcookbook',
  'clipr', 'vdiffr', 'svglite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'RISCA'
Packages required but not available:
  'matrixcalc', 'plyr', 'ggplot2', 'xtable', 'reshape2', 'data.table',
  'doBy', 'mvtnorm', 'Rcpp', 'pseudorank'

Packages suggested but not available for checking:
  'RGtk2', 'cairoDevice', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'shiny', 'rhandsontable', 'knitr'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'CompQuadForm', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'fields'
Packages suggested but not available for checking:
  'scatterplot3d', 'ape', 'coin', 'flexmix', 'gee', 'lme4', 'mclust',
  'party', 'randomForest', 'rmeta', 'vcd', 'gamair', 'multcomp',
  'sandwich', 'mboost', 'mvtnorm', 'partykit', 'wordcloud', 'TH.data'
Running examples in 'HSAUR2-Ex.R' failed
The error most likely occurred in:

> ### Name: BCG
> ### Title: BCG Vaccine Data
> ### Aliases: BCG
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
>   data("BCG", package = "HSAUR2")
> 
>   ### sort studies w.r.t. sample size
>   BCG <- BCG[order(rowSums(BCG[,2:5])),]
> 
>   ### to long format
>   BCGlong <- with(BCG, data.frame(Freq = c(BCGTB, BCGVacc - BCGTB, 
+                                            NoVaccTB, NoVacc - NoVaccTB),
+                   infected = rep(rep(factor(c("yes", "no")), 
+                                  rep(nrow(BCG), 2)), 2),
+                   vaccined = rep(factor(c("yes", "no")), 
+                                  rep(nrow(BCG) * 2, 2)),
+                   study = rep(factor(Study, levels = as.character(Study)), 
+                               4)))
> 
>   ### doubledecker plot
>   library("vcd")
Error in library("vcd") : there is no package called 'vcd'
Execution halted
Packages suggested but not available for checking:
  'ape', 'coin', 'flexmix', 'Formula', 'gamair', 'gamlss.data', 'gee',
  'lme4', 'maps', 'maptools', 'mboost', 'mclust', 'mlbench', 'mice',
  'multcomp', 'mvtnorm', 'partykit', 'quantreg', 'randomForest',
  'rmeta', 'sandwich', 'scatterplot3d', 'sp', 'TH.data', 'vcd',
  'wordcloud', 'HSAUR2'
Running examples in 'HSAUR3-Ex.R' failed
The error most likely occurred in:

> ### Name: BCG
> ### Title: BCG Vaccine Data
> ### Aliases: BCG
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
>   data("BCG", package = "HSAUR3")
> 
>   ### sort studies w.r.t. sample size
>   BCG <- BCG[order(rowSums(BCG[,2:5])),]
> 
>   ### to long format
>   BCGlong <- with(BCG, data.frame(Freq = c(BCGTB, BCGVacc - BCGTB, 
+                                            NoVaccTB, NoVacc - NoVaccTB),
+                   infected = rep(rep(factor(c("yes", "no")), 
+                                  rep(nrow(BCG), 2)), 2),
+                   vaccined = rep(factor(c("yes", "no")), 
+                                  rep(nrow(BCG) * 2, 2)),
+                   study = rep(factor(Study, levels = as.character(Study)), 
+                               4)))
> 
>   ### doubledecker plot
>   library("vcd")
Error in library("vcd") : there is no package called 'vcd'
Execution halted
Packages suggested but not available for checking:
  'scatterplot3d', 'ape', 'coin', 'flexmix', 'gee', 'lme4', 'mclust',
  'party', 'randomForest', 'rmeta', 'vcd', 'mvtnorm', 'TH.data'
Running examples in 'HSAUR-Ex.R' failed
The error most likely occurred in:

> ### Name: planets
> ### Title: Exoplanets Data
> ### Aliases: planets
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
>   data("planets", package = "HSAUR")
>   require("scatterplot3d")
Loading required package: scatterplot3d
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'scatterplot3d'
>   scatterplot3d(log(planets$mass), log(planets$period), log(planets$eccen), 
+                 type = "h", highlight.3d = TRUE,  angle = 55, 
+                 scale.y = 0.7, pch = 16)
Error in scatterplot3d(log(planets$mass), log(planets$period), log(planets$eccen),  : 
  could not find function "scatterplot3d"
Execution halted
Packages required but not available: 'foreach', 'rlist', 'pwr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'rgdal', 'signal', 'caret', 'Boruta'

Packages suggested but not available for checking:
  'rgl', 'RCurl', 'foreach', 'asdreader'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ncvreg', 'glmnet', 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

Packages suggested but not available for checking:
  'knitr', 'raster', 'sp', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
hsicCCA: no visible global function definition for 'median'
hsicCCA: no visible global function definition for 'dist'
hsicCCAfunc: no visible global function definition for 'rnorm'
hsicCCAfunc: no visible global function definition for 'runif'
hsicCCAfunc: no visible global function definition for 'optim'
ktaCCA: no visible global function definition for 'median'
ktaCCA: no visible global function definition for 'dist'
ktaCCAfunc: no visible global function definition for 'rnorm'
ktaCCAfunc: no visible global function definition for 'runif'
ktaCCAfunc: no visible global function definition for 'optim'
Undefined global functions or variables:
  dist median optim rnorm runif
Consider adding
  importFrom("stats", "dist", "median", "optim", "rnorm", "runif")
to your NAMESPACE file.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'snowfall', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'npregfast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'ggpubr', 'data.table', 'tidyr', 'reshape2', 'ggplot2',
  'partitions'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'hsphase', 'dplyr', 'data.table', 'rlist', 'quadprog', 'curl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'formatR', 'AlphaSimR', 'doParallel', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'loo', 'pROC', 'Rcpp', 'RcppParallel', 'rstan',
  'rstantools', 'BH', 'RcppEigen', 'StanHeaders'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bootstrap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'BCBCSF', 'glmnet', 'magrittr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggplot2', 'corrplot', 'testthat', 'bayesplot', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'glue', 'shiny', 'shinyAce', 'shinythemes', 'shinyjqui'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'cld3', 'dplyr', 'httr', 'lubridate', 'magrittr', 'processx',
  'progress', 'R.utils', 'ranger', 'rvest', 'stringr', 'tibble',
  'tidyr', 'urltools', 'xml2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'knitr', 'magrittr', 'checkmate', 'htmlwidgets',
  'htmltools', 'rstudioapi'

Packages suggested but not available for checking:
  'testthat', 'XML', 'xml2', 'Hmisc', 'reshape', 'rmarkdown', 'chron',
  'lubridate', 'tibble', 'purrr', 'tidyselect', 'glue', 'rlang',
  'tidyr', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'tidyr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'xml2', 'XML', 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'httr', 'rvest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'base64enc', 'rlang', 'fastmap'

Packages suggested but not available for checking:
  'markdown', 'testthat', 'withr', 'Cairo', 'ragg', 'shiny'

Package which this enhances but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R2HTML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'jsonlite', 'yaml'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

Package which this enhances but not available for checking: 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'edgeR', 'plotrix', 'capushe'

Packages suggested but not available for checking: 'HTSFilter', 'Biobase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'forecast', 'SparseM', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/hts.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'ggplot2', 'readr', 'stringr', 'purrr',
  'lubridate', 'RSQLite', 'DBI', 'RODBC', 'zoo', 'WriteXLS', 'readxl',
  'RColorBrewer', 'directlabels', 'openair', 'raster', 'editData',
  'shiny'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'ape', 'magrittr', 'stringr', 'plyr', 'dplyr', 'tidyr',
  'ggplot2', 'vegan', 'DESeq2', 'phyloseq', 'coenocliner', 'lazyeval'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'doParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'msm', 'data.table', 'survey', 'mvtnorm', 'truncnorm',
  'magrittr', 'purrr', 'Rdpack'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'R.rsp', 'GGally', 'gplots',
  'scales', 'EnvStats', 'RColorBrewer', 'TeachingDemos', 'classInt',
  'ks', 'stringr', 'reshape', 'reshape2', 'viridis', 'CensRegMod',
  'gmodels', 'colorspace', 'cowplot', 'ggrepel', 'dplyr', 'forcats',
  'smatr', 'gridExtra', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'httr'

Packages suggested but not available for checking:
  'httptest', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'later', 'systemfonts', 'cpp11', 'BH'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'fontquiver', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'pryr', 'magrittr', 'httpcode'

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
getToHost: no visible global function definition for 'make.socket'
getToHost: no visible global function definition for 'write.socket'
getToHost: no visible global function definition for 'read.socket'
getToHost: no visible global function definition for 'close.socket'
postToHost: no visible global function definition for 'runif'
simplePostToHost: no visible global function definition for
  'make.socket'
simplePostToHost: no visible global function definition for
  'write.socket'
simplePostToHost: no visible global function definition for
  'read.socket'
simplePostToHost: no visible global function definition for
  'close.socket'
Undefined global functions or variables:
  close.socket make.socket read.socket runif write.socket
Consider adding
  importFrom("stats", "runif")
  importFrom("utils", "close.socket", "make.socket", "read.socket",
             "write.socket")
to your NAMESPACE file.
Packages required but not available:
  'digest', 'httr2', 'jsonlite', 'rlang', 'testthat'

Packages suggested but not available for checking:
  'curl', 'knitr', 'pkgload', 'rmarkdown', 'spelling', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'testthat', 'curl', 'digest', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'covr', 'knitr', 'pkgload', 'rmarkdown', 'spelling', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'R6', 'promises', 'later'

Packages suggested but not available for checking:
  'testthat', 'callr', 'curl', 'websocket'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'curl', 'glue', 'magrittr', 'openssl', 'R6', 'rappdirs',
  'rlang', 'withr'

Packages suggested but not available for checking:
  'askpass', 'clipr', 'covr', 'docopt', 'httpuv', 'jose', 'jsonlite',
  'knitr', 'purrr', 'rmarkdown', 'testthat', 'tibble', 'webfakes',
  'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'jsonlite', 'mime', 'openssl', 'R6'

Packages suggested but not available for checking:
  'covr', 'httpuv', 'jpeg', 'knitr', 'png', 'readr', 'rmarkdown',
  'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'colorspace'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magick', 'cowplot', 'ggplot2', 'dplyr', 'tidyr', 'tibble', 'purrr',
  'sysfonts', 'showtext', 'qrcode', 'pdftools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'gsheet', 'inti'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'assertthat', 'glue'

Packages suggested but not available for checking: 'testthat', 'purrr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'dplyr', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'gtools', 'Rcpp', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'digest'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'pdftools', 'janeaustenr', 'wordcloud2',
  'knitr', 'stopwords', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'rstan', 'cowplot', 'Hmisc', 'HDInterval',
  'magrittr', 'dplyr', 'tidyr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'data.table', 'dplyr', 'ggmap', 'ggplot2', 'lazyeval', 'lubridate',
  'mapproj', 'maps', 'purrr', 'RColorBrewer', 'rlang', 'stringr',
  'tidyr'

Packages suggested but not available for checking:
  'hurricaneexposuredata', 'knitr', 'pander', 'rmarkdown',
  'weathermetrics'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'glue', 'hutils', 'magrittr'

Packages suggested but not available for checking:
  'bench', 'TeXCheckR', 'withr', 'tinytest', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'magrittr', 'fastmatch'

Packages suggested but not available for checking:
  'testthat', 'desc', 'dplyr', 'digest', 'Hmisc', 'hutilscpp',
  'microbenchmark', 'knitr', 'rmarkdown', 'nycflights13', 'geosphere',
  'ggplot2', 'readr', 'rcheology', 'rstudioapi', 'survey', 'tibble',
  'tidyr', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'commonmark', 'generics', 'glue', 'memoise', 'R6',
  'rlang', 'stringi', 'stringr', 'tidyselect', 'xml2'

Packages suggested but not available for checking:
  'AER', 'bookdown', 'broom', 'broom.mixed', 'covr', 'crayon',
  'devtools', 'dplyr', 'fansi', 'flextable', 'ftExtra', 'ggplot2',
  'httr', 'knitr', 'lme4', 'lmtest', 'officer', 'openxlsx', 'psych',
  'rmarkdown', 'sandwich', 'scales', 'testthat', 'tibble', 'tinytex'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'doFuture', 'foreach', 'iterators', 'pracma', 'tensr',
  'doRNG'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'asnipe', 'spatsoc', 'data.table'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'wordcloud2', 'shiny', 'colourpicker'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
HW.plain: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Malformed Description field: should contain one or more complete sentences.
getHwriterVersion: no visible global function definition for
  'sessionInfo'
hmapRowCol: no visible global function definition for 'na.omit'
hwriteImage: no visible global function definition for 'dev.print'
hwriteImage: no visible binding for global variable 'png'
showExample: no visible global function definition for 'browseURL'
Undefined global functions or variables:
  browseURL dev.print na.omit png sessionInfo
Consider adding
  importFrom("grDevices", "dev.print", "png")
  importFrom("stats", "na.omit")
  importFrom("utils", "browseURL", "sessionInfo")
to your NAMESPACE file.
Packages required but not available: 'sf', 'raster', 'httr'

Packages suggested but not available for checking:
  'rgdal', 'ncdf4', 'magrittr', 'knitr', 'markdown', 'rmarkdown',
  'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'polynom', 'wavethresh'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomForest', 'kernelFactory', 'ada', 'ROCR', 'e1071', 'NMOF',
  'GenSA', 'Rmalschains', 'pso', 'AUC', 'soma', 'genalg', 'reportr',
  'nnls', 'quadprog', 'tabuSearch', 'rotationForest', 'FNN', 'glmnet'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'doRNG', 'foreach', 'ggplot2', 'GillespieSSA',
  'reshape2', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pheatmap'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'DiagrammeR', 'plyr', 'dplyr', 'graph', 'magrittr',
  'pixiedust', 'rjags', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'RCurl', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'igraph', 'igraphdata', 'RSpectra'
Package unavailable to check Rd xrefs: 'RSpectra'
Packages required but not available:
  'ggplot2', 'gtools', 'reshape2', 'units'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'nsRFA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'zoo', 'hydroTSM', 'xts'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'minpack.lm'
Running examples in 'HydroMe-Ex.R' failed
The error most likely occurred in:

> ### Name: Brook
> ### Title: Brook-Corey water retention model
> ### Aliases: Brook
> ### Keywords: Models manip
> 
> ### ** Examples
> 
> ## Attach sample data (isric data) from the package
> data(isric)
> pf <- subset(isric, Sample=="Benin2")
> require("minpack.lm")
Loading required package: minpack.lm
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'minpack.lm'
> brook.ns <- nlsLM(y ~ Brook(x,thr,ths,alp,nscal), data=pf,
+                   control = nls.lm.control(maxiter=200),
+                   start = c(thr= Dstart(pf)[1], ths = Dstart(pf)[2],
+                             alp= Dstart(pf)[3], nscal=Dstart(pf)[4]-1))
Error in nlsLM(y ~ Brook(x, thr, ths, alp, nscal), data = pf, control = nls.lm.control(maxiter = 200),  : 
  could not find function "nlsLM"
Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat', 'data.table'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Hmisc', 'sp', 'zoo', 'lhs', 'hydroTSM', 'hydroGOF', 'vioplot',
  'scatterplot3d', 'data.table'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggpmisc', 'ggplot2', 'gridExtra', 'hydropeak', 'lubridate',
  'reshape2', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringi', 'stringr', 'tibble', 'pingr', 'readr', 'jsonlite'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'dplyr', 'plyr'
Packages required but not available:
  'ggplot2', 'plotly', 'lubridate', 'readxl', 'reshape2', 'magrittr',
  'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'plotly', 'lubridate', 'readxl', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'xts', 'e1071', 'gstat', 'automap', 'sp', 'maptools'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'zoo', 'rgdal', 'plyr', 'moments', 'lmom',
  'maps', 'maptools', 'rgeos', 'ncdf4', 'data.table'

Packages suggested but not available for checking:
  'gridExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'cubature', 'Rcpp', 'partitions', 'mathjaxr', 'disordR',
  'alabama', 'calibrator'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown', 'testthat', 'bookdown', 'rticles'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'actuar'
Packages required but not available: 'plotly', 'stringr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magicaxis', 'rgl', 'LaplacesDemon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'flowCore', 'sp', 'rgeos'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'Rcpp', 'gsl', 'JuliaConnectoR', 'EigenR', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'Bessel', 'jack', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'elliptic', 'contfrac', 'deSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'mclust', 'proxy', 'RSpectra', 'gtools'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'matlib', 'ggplot2', 'rgl', 'misc3d'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plotrix', 'rlang', 'webshot2', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'unbalanced', 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'xml2', 'testthat', 'latticeExtra', 'lazyeval', 'dplyr'

Packages suggested but not available for checking:
  'R.matlab', 'tripack', 'deldir', 'rgl', 'plotrix', 'sp', 'baseline',
  'inline', 'Rcpp', 'fastcluster', 'pls', 'mvtnorm', 'digest',
  'reshape', 'devtools', 'R.rsp', 'tibble'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'raster', 'maps', 'geometry', 'ks', 'pdist', 'fastcluster',
  'e1071', 'hitandrun', 'progress', 'mvtnorm', 'data.table', 'rgeos',
  'sp', 'foreach', 'doParallel', 'ggplot2', 'pbapply',
  'palmerpenguins', 'purrr', 'dplyr', 'caret', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rgl', 'magick', 'alphahull', 'knitr', 'rmarkdown', 'gridExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ranger'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
conint: no visible global function definition for 'sd'
findroot: no visible global function definition for 'integrate'
hypothesis: no visible global function definition for 'sd'
hypothesis: no visible global function definition for 'integrate'
Undefined global functions or variables:
  integrate sd
Consider adding
  importFrom("stats", "integrate", "sd")
to your NAMESPACE file.
Packages required but not available: 'dplyr', 'httr', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'cli', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'PolynomF', 'dplyr', 'ggplot2', 'terra', 'stars', 'sf', 'sjPlot'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'compare', 'orthopolynom', 'grImport2', 'Rglpk', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'qpdf', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sets', 'pbapply', 'reliaR', 'kerdiest', 'triangle', 'rgenoud'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'car', 'msm'

Packages suggested but not available for checking: 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'lubridate'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'htmltools', 'knitr', 'rmarkdown', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'foreach', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'knitr', 'flexdashboard', 'assertive.sets',
  'assertive.types', 'rmarkdown', 'stringr', 'stringi', 'glue',
  'ymlthis', 'xfun', 'htmltools'

Packages suggested but not available for checking:
  'switchr', 'plotly', 'BiocStyle', 'testthat', 'ComplexHeatmap',
  'digest', 'ggplot2', 'gt', 'kableExtra', 'forcats', 'leaflet'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'incidence2', 'trending', 'dplyr', 'tibble', 'rlang', 'tidyr',
  'vctrs', 'ellipsis', 'ggplot2', 'data.table', 'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'outbreaks', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'evaluate', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'FrF2', 'stringi', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'shinydashboard'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'manipulate', 'tibble', 'dplyr', 'tidyr', 'dplR', 'rlang',
  'tidyselect'

Packages suggested but not available for checking:
  'lazyeval', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'JuliaCall', 'stringr', 'rlang', 'lifecycle', 'rappdirs', 'ggplot2',
  'cowplot', 'rjson'

Packages suggested but not available for checking:
  'testthat', 'covr', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'knitr', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'eRm', 'ggplot2', 'gridExtra', 'Hmisc', 'PP', 'psychotools',
  'vcdExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Rdpack'

Package suggested but not available for checking: 'arfima'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'lazyeval'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'dplyr', 'reshape2', 'qgraph'

Package suggested but not available for checking: 'nparcomp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'msm', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dslabs', 'rlang', 'ggplot2', 'scales', 'dplyr', 'stringr',
  'magrittr', 'Ecdat', 'kableExtra'

Packages suggested but not available for checking:
  'tidyverse', 'rmarkdown', 'knitr', 'caret', 'reshape2', 'lubridate',
  'ggrepel', 'writexl', 'cowplot', 'DT', 'gutenbergr', 'tidytext',
  'rvest', 'Lahman', 'pdftools', 'HistData', 'titanic', 'BiocManager',
  'waldo', 'usethis', 'vdiffr', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'jsonlite', 'rlang', 'magrittr', 'tibble',
  'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'covr', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lsa', 'tidyr', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ibdhap.barplot: no visible global function definition for 'rect'
ibdhap.compare.loci: no visible global function definition for 'hist'
ibdhap.compare.segs: no visible global function definition for 'tail'
ibdhap.make.calls: no visible global function definition for
  'count.fields'
ibdhap.make.calls: no visible global function definition for
  'read.table'
ibdhap.make.true: no visible global function definition for
  'read.table'
ibdhap.names: no visible global function definition for 'count.fields'
ibdhap.names: no visible global function definition for 'read.table'
ibdhap.reduce.states: no visible global function definition for
  'read.table'
ibdhap.reduce.states: no visible global function definition for
  'write.table'
Undefined global functions or variables:
  count.fields hist read.table rect tail write.table
Consider adding
  importFrom("graphics", "hist", "rect")
  importFrom("utils", "count.fields", "read.table", "tail",
             "write.table")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'lpSolve', 'car', 'emmeans', 'multcomp'

Package suggested but not available for checking: 'multcompView'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Errors in running code in vignettes:
when running code in 'ibdreg.Rnw'
Error in loadVignetteBuilder(pkgdir) : vignette builder 'R.rsp' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  'ibdreg.Rnw'... failed to complete the test
Packages required but not available:
  'pedtools', 'ggplot2', 'glue', 'Rcpp', 'ribd'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'paramlink'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fields', 'deldir', 'rgeos', 'sp', 'spdep'

Package suggested but not available for checking: 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RODBC', 'arules', 'rpart.plot', 'ggplot2'

Package suggested but not available for checking: 'SparkR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'checkmate', 'readr', 'rlang', 'tidyr', 'dplyr', 'reshape',
  'purrr', 'ggplot2'

Packages suggested but not available for checking:
  'RcppArmadillo', 'knitr', 'rmarkdown', 'bookdown', 'ggfortify',
  'magick', 'colorspace', 'gridExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'htmlwidgets'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
Iboot: no visible global function definition for 'quantile'
Undefined global functions or variables:
  quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Package unavailable to check Rd xrefs: 'simpleboot'
Packages required but not available: 'lme4', 'Rdpack', 'VGAM'

Packages suggested but not available for checking:
  'knitr', 'nlraa', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'DALEX', 'knitr', 'rmarkdown', 'randomForest', 'e1071', 'ranger',
  'testthat', 'r2d3', 'jsonlite', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pamr', 'impute', 'iC10TrainingData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
ICA: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Package required but not available: 'V8'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vegan', 'permute', 'ape', 'bigmemory', 'nortest', 'minpack.lm',
  'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Biostrings', 'BSgenome', 'data.table', 'dplyr', 'GenomeInfoDb',
  'GenomicRanges', 'IRanges', 'RColorBrewer', 'stringi', 'zip'

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.1000genomes.hs37d5',
  'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'nloptr', 'cubature', 'sn', 'mnormt', 'mvQuad', 'RcppEigen'

Packages suggested but not available for checking: 'rgl', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'caret', 'doParallel', 'dplyr', 'ggplot2', 'foreach', 'httr',
  'magrittr', 'plotROC', 'plyr', 'raster', 'reshape2', 'sp', 'leaflet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rstan', 'ggplot2', 'glue', 'RCurl', 'KEGGgraph', 'igraph',
  'reshape2', 'mc2d', 'abind'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'Rglpk', 'slam', 'xtable', 'magrittr'
Running examples in 'icarus-Ex.R' failed
The error most likely occurred in:

> ### Name: newMarginMatrix
> ### Title: Create empty margin matrix
> ### Aliases: newMarginMatrix
> 
> ### ** Examples
> 
> library(magrittr)
Error in library(magrittr) : there is no package called 'magrittr'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'HI', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'dplyr', 'purrr', 'latex2exp', 'matrixStats', 'ggplot2',
  'gglasso', 'PRROC'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'fitdistrplus', 'icenReg', 'numDeriv', 'ICsurv', 'msm',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'lme4', 'RcppArmadillo'

Packages suggested but not available for checking:
  'RLRsim', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'lme4'
'LazyData' is specified without a 'data' directory
Running examples in 'ICCbin-Ex.R' failed
The error most likely occurred in:

> ### Name: iccbin
> ### Title: Estimates Intracluster Correlation coefficients (ICC) and it's
> ###   confidence intervals (CI)
> ### Aliases: iccbin
> 
> ### ** Examples
> 
> bccdata <- rcbin(prop = .4, prvar = .2, noc = 30, csize = 20, csvar = .2, rho = .2)
> iccbin(cid = cid, y = y, data = bccdata)
Warning in iccbin(cid = cid, y = y, data = bccdata) :
  One or Both of 'Zou and Donner's Modified Wald' Confidence Limits Fell Outside of [0, 1]
Error: Package 'lme4' is needed for methods 'lin' and 'sim'. Please install it.
Execution halted
Packages required but not available:
  'glmmTMB', 'ggplot2', 'Deriv', 'gridExtra', 'VGAM', 'dplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'partykit', 'icenReg', 'ipred'

Packages suggested but not available for checking: 'LTRCtrees', 'inum'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ICCbare: no visible global function definition for 'na.omit'
ICCbare: no visible global function definition for 'formula'
ICCbare: no visible global function definition for 'replications'
ICCbare: no visible global function definition for 'aggregate'
ICCbare: no visible global function definition for 'anova'
ICCbare: no visible global function definition for 'aov'
ICCbareF: no visible global function definition for 'aggregate'
ICCest: no visible global function definition for 'na.omit'
ICCest: no visible global function definition for 'anova'
ICCest: no visible global function definition for 'aov'
ICCest: no visible global function definition for 'aggregate'
ICCest: no visible global function definition for 'qf'
ICCest: no visible global function definition for 'qnorm'
Nest: no visible global function definition for 'qnorm'
effort : CIW: no visible global function definition for 'qf'
effort: no visible global function definition for 'axis'
effort: no visible global function definition for 'lines'
effort: no visible global function definition for 'legend'
Undefined global functions or variables:
  aggregate anova aov axis formula legend lines na.omit qf qnorm
  replications
Consider adding
  importFrom("graphics", "axis", "legend", "lines")
  importFrom("stats", "aggregate", "anova", "aov", "formula", "na.omit",
             "qf", "qnorm", "replications")
to your NAMESPACE file.
Packages required but not available:
  'magrittr', 'dplyr', 'purrr', 'tidyr', 'tidyselect', 'stringi',
  'rlang', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'rvest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'icd'
Note: found 55 marked UTF-8 strings
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dplyr', 'rcmdcheck'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'graphite', 'metap', 'org.Hs.eg.db'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sfsmisc'

Package suggested but not available for checking: 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'glue', 'pillar', 'purrr', 'rlang'

Packages suggested but not available for checking:
  'checkmate', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'plotly', 'Rtsne', 'gridExtra', 'ggrepel', 'ggpubr',
  'scatterplot3d', 'RColorBrewer', 'knitr', 'NbClust', 'shiny',
  'pheatmap', 'ape', 'ggdendro', 'plyr', 'reshape', 'Hmisc',
  'htmlwidgets', 'uwot', 'hdf5r', 'progress', 'igraph', 'data.table',
  'Rcpp', 'RANN', 'jsonlite', 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'coda', 'foreach', 'MLEcens', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Icens', 'TeachingDemos', 'mvtnorm', 'smoothSurv', 'gtools'

Packages suggested but not available for checking:
  'interval', 'logspline', 'mixAK', 'bayesSurv', 'FHtest', 'glrt',
  'icenReg', 'frailtypack', 'MIICD', 'MLEcens', 'cubature', 'runjags',
  'coda', 'ICBayes', 'dynsurv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'KernSmooth' which was already attached by Depends.
  Please remove these calls from your code.
bickde: no visible global function definition for 'optimize'
iclocpoly: no visible global function definition for 'approx'
iclocpoly: no visible global function definition for 'sd'
iclocpoly: no visible global function definition for 'dnorm'
iclocpoly: no visible global function definition for 'pnorm'
iclocpoly: no visible global function definition for 'var'
inmost: no visible global function definition for 'stack'
Undefined global functions or variables:
  approx dnorm optimize pnorm sd stack var
Consider adding
  importFrom("stats", "approx", "dnorm", "optimize", "pnorm", "sd",
             "var")
  importFrom("utils", "stack")
to your NAMESPACE file.
Packages required but not available:
  'shiny', 'shinythemes', 'purrr', 'DT', 'tidyverse', 'readxl',
  'ggplot2', 'ggrepel', 'digest', 'shinyhelper'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glue', 'sf', 'lwgeom', 'units', 'data.table', 'httr', 'foreach',
  'doParallel', 'magrittr', 'leaflet', 'leafgl', 'leaflet.extras',
  'leafsync', 'miniUI', 'shiny', 'rnaturalearth', 'lubridate', 'rvest'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'DT', 'mapview', 'stargazer', 'reshape2',
  'plotly', 'geodist', 'CopernicusDEM', 'terra', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'whoami', 'keyring', 'httr', 'base64enc', 'jsonlite', 'getPass'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'icesVocab'
Packages required but not available: 'sqldf', 'icesDatsu'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'icesConnect', 'httr', 'jsonlite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'png', 'httr', 'xml2', 'openssl', 'icesVocab'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'icesConnect', 'httr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'roxygen2', 'glue', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xml2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fastcluster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ICsurv', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'ggplot2', 'jsonlite', 'tibble', 'xts', 'zoo'

Packages suggested but not available for checking:
  'keyring', 'openssl', 'shiny', 'covr', 'knitr', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'mvtnorm', 'kappalab'

Package suggested but not available for checking: 'relaimpo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rugarch', 'sandwich', 'xts', 'car', 'coefplot', 'fBasics',
  'forecast', 'lmtest', 'lubridate', 'openair', 'papeR', 'timeDate',
  'timeSeries', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'caTools', 'gdata', 'gtools', 'gplots'

Depends: includes the non-default packages:
  'lattice', 'caTools', 'gdata', 'gtools', 'gplots', 'parallel'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'EbayesThresh'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'magick', 'rgdal'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'dplyr', 'kableExtra', 'data.tree',
  'dendextend'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'sp', 'igraph'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rgdal', 'raster', 'rgl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rvest', 'purrr', 'httr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'multcomp', 'gmp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'ggplot2'
Running examples in 'icrf-Ex.R' failed
The error most likely occurred in:

> ### Name: survplot
> ### Title: 'Plotting individual survival curves'
> ### Aliases: survplot
> 
> ### ** Examples
> 
> # rats data example.
> # Note that this is a toy example. Use a larger ntree and nfold in practice.
> data(rat2)
> ## Don't show: 
>  set.seed(1)
>  rats.icrf <-
+    icrf(~ dose.lvl + weight + male + cage.no, data = rat2,
+         data.type = "currentstatus", currentstatus.label = c("survtime", "tumor"),
+         returnBest = TRUE, ntree=2, nfold=2)

Forest loop 1 out of 2 folds
Tree 1 2 
   IMSE1 (OOB, non-OOB) = (0.131, 0.085), IMSE2 = (0.252, 0.193)
Forest loop 2 out of 2 folds
Tree 1 2 
   IMSE1 (OOB, non-OOB) = (0.134, 0.079), IMSE2 = (0.268, 0.193)
>  survplot(rats.icrf, c(1,3,5))
Error in loadNamespace(x) : there is no package called 'ggplot2'
Calls: survplot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'icensmis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CompQuadForm', 'dplyr', 'magrittr', 'Rcpp', 'rje', 'zoo',
  'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'ICS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ICS', 'moments', 'mvtnorm'

Package suggested but not available for checking: 'REPPlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'survey'

Packages suggested but not available for checking:
  'pixmap', 'robustbase', 'ICSNP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ICS', 'ICSOutlier', 'shiny', 'ICSNP', 'rrcov', 'simsalapar', 'DT'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rstack'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'matrixcalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'rgenoud', 'minqa'
Running examples in 'icsw-Ex.R' failed
The error most likely occurred in:

> ### Name: compliance.score
> ### Title: Estimate compliance scores using covariates.
> ### Aliases: compliance.score
> 
> ### ** Examples
> 
> 
> # Load example dataset, see help(FoxDebate) for details
> data(FoxDebate)
> 
> # Matrix of covariates
> covmat <- with(FoxDebate, cbind(partyid, pnintst, watchnat, educad, readnews, 
+                                 gender, income, white))
> 
> # Estimate compliance scores with covariates, assuming (default) 
> #   case of two-sided non-compliance
> cscoreout <- with(FoxDebate, compliance.score(D = watchpro, Z = conditn,
+                                               W = covmat))
Error in compliance.score(D = watchpro, Z = conditn, W = covmat) : 
  rgenoud package required to use genoud = TRUE option.
Calls: with -> with.default -> eval -> eval -> compliance.score
Execution halted
Packages required but not available:
  'JADE', 'ICS', 'ggplot2', 'Rcpp', 'ICSNP', 'survey', 'GGally', 'png',
  'zoo', 'xts', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'fICA'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fftwtools', 'Rcpp', 'terra'

Packages suggested but not available for checking:
  'ggnewscale', 'ggplot2', 'knitr', 'metR', 'ncf', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'FD', 'picante', 'spatstat', 'ape', 'spatstat.geom', 'spatstat.core',
  'spatstat.random'

Packages suggested but not available for checking: 'ecespa', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0

idbg.interact: no visible global function definition for
  'capture.output'
idbg.interact: no visible global function definition for 'timestamp'
idbg.print_breakpoints: no visible global function definition for
  'capture.output'
Undefined global functions or variables:
  capture.output timestamp
Consider adding
  importFrom("utils", "capture.output", "timestamp")
to your NAMESPACE file.
Packages required but not available:
  'jsonlite', 'dplyr', 'httr', 'countrycode', 'purrr',
  'rnaturalearthdata', 'sf'

Packages suggested but not available for checking: 'tidyr', 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'httr', 'tibble'

Packages suggested but not available for checking:
  'covr', 'readr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'tidyr', 'dplyr', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'dplyr', 'mlogit', 'Rcpp', 'Rdpack', 'scales', 'tmvtnorm',
  'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'sqldf', 'mice', 'StanHeaders', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'shiny', 'rmarkdown', 'pander', 'DT', 'shinythemes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tkrplot'

Packages suggested but not available for checking:
  'rggobi', 'DendSer', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'sp', 'spacetime', 'dplyr', 'tidyr', 'FRK', 'DEoptim',
  'sparseinv'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/IDE_intro.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'FNN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'evd', 'ismev', 'RcppRoll', 'pbapply', 'fastmatch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'mvtnorm', 'glasso', 'GGMridge', 'visNetwork', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'crayon', 'plyr', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'rentrez', 'ggplot2', 'ggpubr', 'ggtree', 'phytools', 'treeio',
  'rmdformats', 'knitr', 'kableExtra', 'rvcheck', 'badger',
  'rmarkdown', 'RCurl', 'shiny', 'shinydashboard', 'rhandsontable',
  'gtools', 'rclipboard', 'clipr'

VignetteBuilder packages required for checking but not installed:
  'rmdformats', 'knitr', 'kableExtra', 'rmarkdown', 'RCurl', 'rvcheck',
  'badger', 'rentrez'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'infotheo', 'lme4'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'rlang', 'ggplot2', 'viridis', 'magrittr', 'purrr',
  'future', 'furrr', 'stringr', 'tibble', 'tidyr', 'deSolve'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'pkgnet', 'DT', 'vdiffr',
  'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'animation', 'dummies', 'corpcor', 'ca', 'ggrepel'

Package suggested but not available for checking: 'caret'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'VennDiagram'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'knitr', 'RcppArmadillo'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'SwissAir'
Packages unavailable to check Rd xrefs: 'sfsmisc', 'RColorBrewer', 'hexbin', 'SwissAir'
Packages required but not available: 'Rsolnp', 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
comp.uri: no visible global function definition for 'quantile'
est.IDR: no visible global function definition for 'ecdf'
get.pseudo.mix: no visible global function definition for 'pnorm'
get.uri.2d: no visible global function definition for 'smooth.spline'
get.uri.2d: no visible global function definition for 'predict'
Undefined global functions or variables:
  ecdf pnorm predict quantile smooth.spline
Consider adding
  importFrom("stats", "ecdf", "pnorm", "predict", "quantile",
             "smooth.spline")
to your NAMESPACE file.
Packages required but not available:
  'GD', 'ggplot2', 'reshape2', 'kableExtra'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'IDSL.MXP', 'xml2', 'base64enc', 'readxl', 'doSNOW', 'foreach',
  'ggplot2', 'gridExtra', 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'IDSL.MXP', 'xml2', 'base64enc', 'IDSL.IPA', 'readxl', 'doSNOW',
  'foreach', 'GA', 'doParallel', 'ggplot2', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'IDSL.MXP', 'xml2', 'base64enc', 'IDSL.IPA', 'IDSL.UFA', 'readxl',
  'doSNOW', 'foreach', 'RcppAlgos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'foreach', 'igraph', 'spatstat.core', 'spatstat.geom'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'openssl', 'uuid'

Packages suggested but not available for checking:
  'knitr', 'rcorpora', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'XML', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lubridate'

Packages suggested but not available for checking:
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  'rgdal', 'ggplot2', 'stringi', 'mgsub', 'knitr', 'rmarkdown',
  'maptools', 'sp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'openxlsx', 'gWidgets2', 'gWidgets2tcltk', 'stringi',
  'mgsub', 'reader', 'lubridate', 'data.table', 'assertthat',
  'checkmate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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  'data.table', 'stringi', 'qdap', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
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  'zoo', 'pracma', 'iemiscdata', 'import', 'gsubfn', 'fpCompare',
  'units', 'CHNOSZ', 'testit', 'stringi', 'rgdal', 'sp', 'data.table'

Packages suggested but not available for checking:
  'install.load', 'ie2misc', 'Rcpp', 'NISTunits', 'optiRum', 'rivr',
  'knitr', 'rmarkdown', 'ramify'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'qlcMatrix', 'mathjaxr', 'expm', 'foreach', 'rlecuyer', 'HDCI',
  'doParallel', 'future', 'glmnet'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rlab', 'coda', 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'reshape2', 'rpf', 'OpenMx'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'gridExtra', 'plyr', 'xtable'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/pritikin-schmidt.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'rmarkdown', 'isotree'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppProgress', 'xml2', 'png', 'tiff', 'jpeg', 'gridExtra',
  'latticeExtra', 'DT', 'visNetwork'

Packages suggested but not available for checking:
  'IFCdata', 'shiny', 'reticulate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'caret', 'zoo', 'magrittr'

Packages suggested but not available for checking:
  'data.table', 'DescTools', 'forecast', 'h2o', 'keras', 'kernlab',
  'lubridate', 'tensorflow', 'tibble', 'timeSeries', 'timeDate',
  'timetk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'haplo.stats', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'pscl', 'GIGrvg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caTools', 'dplyr', 'ggplot2', 'ggpubr', 'gridExtra', 'hms',
  'lubridate', 'magrittr', 'patchwork', 'scales', 'shiny', 'tibble',
  'tidyr', 'zoo', 'plotly', 'gtable'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'countrycode'
Note: found 160 marked UTF-8 strings
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'shiny', 'shinydashboard', 'shinyWidgets', 'shinyFiles', 'htmltools',
  'rhandsontable', 'sortable', 'purrr', 'stringr', 'glue', 'lubridate',
  'zoo', 'tibble', 'dplyr', 'tidyr', 'fuzzyjoin', 'rio', 'jsonlite',
  'fst', 'feather', 'haven', 'readxl', 'readODS', 'Hmisc', 'skimr',
  'tables', 'ggformula', 'mapsf', 'clipr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'reticulate'

Packages suggested but not available for checking:
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  'hetGP', 'testthat', 'lhs', 'ggplot2', 'reshape', 'ContourFunctions',
  'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'igraph'
Packages required but not available: 'shiny', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'clue', 'igraph', 'irlba', 'Rcpp'

Packages suggested but not available for checking:
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  'purrr', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'pkgconfig'

Packages suggested but not available for checking:
  'ape', 'graph', 'igraphdata', 'rgl', 'scales', 'testthat', 'withr',
  'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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  'covr', 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.r'
Running the tests in 'tests/testthat.r' failed.
Complete output:
  > # Run all unit tests
  > 
  > # This is a wrapper around all the tests specified
  > # in the tests/testthat directory. These tests are visible
  > # to users and serve as small examples as well.
  > testthat::test_check("igrf")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available: 'e1071', 'BootMRMR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'ggdendro', 'fastcluster', 'RColorBrewer', 'htmlwidgets',
  'jsonlite', 'scales', 'knitr'

Packages suggested but not available for checking:
  'htmltools', 'shiny', 'testthat', 'rmarkdown', 'reshape2',
  'roxygen2', 'covr', 'webshot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bookdown', 'dplyr', 'ggplot2', 'rmarkdown', 'xaringan', 'crayon',
  'pdftools', 'rlang', 'servr', 'readr', 'rstudioapi', 'tibble',
  'tidytext', 'bib2df', 'purrr', 'stringr', 'fs', 'usethis', 'gender',
  'remotes'

Packages suggested but not available for checking:
  'testthat', 'kableExtra', 'knitr', 'DT', 'leaflet'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'dplyr', 'httr', 'lubridate', 'magrittr', 'purrr', 'readxl',
  'rlang', 'rvest', 'tidyr', 'xml2'

Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpint', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R2jags', 'lavaan'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'rlang', 'strex', 'stringr', 'withr', 'zeallot'

Packages suggested but not available for checking:
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  'rmarkdown', 'rprojroot', 'spelling', 'testthat', 'tiff', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'pbapply', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'foreach', 'truncnorm', 'lhs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'readbitmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'pixmap', 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'sp'

Packages suggested but not available for checking:
  'pixmap', 'magick', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'pixmap', 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dae', 'ggplot2', 'readxl', 'Hmisc', 'GGally', 'RColorBrewer',
  'reshape'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'magick', 'FNN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.utils', 'readbitmap', 'pracma', 'magick', 'OpenImageR'

Packages suggested but not available for checking:
  'ggplot2', 'scales', 'shiny', 'testthat', 'mockery', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'moments', 'signal'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'sp'

Packages suggested but not available for checking: 'pixmap', 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'imager', 'fftwtools', 'magrittr', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tesseract'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'Rcpp', 'stringr', 'png', 'jpeg', 'readbitmap', 'purrr',
  'downloader', 'igraph'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'dplyr', 'scales', 'testthat',
  'raster', 'spatstat.geom', 'magick', 'Cairo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'keras', 'magick', 'magrittr', 'purrr', 'tibble', 'foreach',
  'doParallel', 'dplyr'

Packages suggested but not available for checking: 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'magick'

Package suggested but not available for checking: 'opencv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'checkmate', 'distributions3', 'dplyr', 'lubridate',
  'magrittr', 'rlang', 'stringi', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'imager', 'jpeg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'imager'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bnlearn', 'KernelKnn', 'ggplot2', 'mvtnorm', 'Rcpp', 'smotefamily',
  'FNN', 'C50', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RNifti', 'magrittr'

Packages suggested but not available for checking:
  'mmand', 'tinytest', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SingleCellExperiment', 'SummarizedExperiment', 'S4Vectors',
  'spatstat.geom'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'dplyr', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'devtools', 'rlang', 'dplyr', 'tidyr', 'readr', 'tibble', 'janitor',
  'Hmisc', 'httr', 'readxl', 'readODS'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'IsingSampler', 'igraph', 'qgraph'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'plotly', 'MBESS'

Package suggested but not available for checking: 'mediation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'httr', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'downloader', 'farver', 'tibble', 'magrittr', 'dplyr', 'jpeg'

Packages suggested but not available for checking:
  'testthat', 'covr', 'bmp', 'png', 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'base64enc', 'dplyr', 'httr', 'jsonlite', 'rlang'

Packages suggested but not available for checking:
  'magick', 'ggplot2', 'usethis', 'pillar', 'rtweet', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'png', 'jpeg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixStats', 'mclust', 'mvnfast', 'Rfast', 'slam', 'viridisLite'

Packages suggested but not available for checking:
  'gmp', 'knitr', 'mcclust', 'rmarkdown', 'Rmpfr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'mvtnorm', 'mixtools', 'mclust', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'data.table', 'Formula', 'future', 'future.apply',
  'ggplot2', 'keras', 'Metrics', 'prediction', 'R6'

Packages suggested but not available for checking:
  'ALEPlot', 'bench', 'caret', 'covr', 'e1071', 'future.callr',
  'glmnet', 'gower', 'h2o', 'knitr', 'mlr', 'mlr3', 'party',
  'partykit', 'patchwork', 'randomForest', 'ranger', 'rmarkdown',
  'testthat', 'yaImpute'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'proxyC', 'pbapply', 'magrittr', 'clusterProfiler',
  'GSEABase', 'ggplot2', 'visNetwork', 'RobustRankAggreg', 'reshape2',
  'corrr', 'GSVA', 'Boruta', 'limma'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CDM', 'coda', 'psychotools', 'Rcpp', 'sirt', 'TAM', 'RcppArmadillo'

Packages suggested but not available for checking: 'eRm', 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'dtplyr', 'data.table', 'patchwork',
  'factoextra', 'fpc', 'UpSetR', 'pheatmap', 'ggrepel', 'reshape2',
  'circlize', 'Rtsne', 'readxl', 'shiny', 'shinythemes', 'airr',
  'ggseqlogo', 'ggalluvial', 'Rcpp', 'magrittr', 'scales', 'ggpubr',
  'rlang', 'plyr', 'dbplyr', 'jsonlite', 'readr', 'stringr', 'tibble',
  'tidyselect', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'roxygen2', 'testthat', 'pkgdown', 'assertthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'poweRlaw', 'stringdist', 'Biostrings', 'igraph', 'stringr',
  'data.table', 'plyr', 'reshape2', 'ggplot2', 'ggthemes',
  'RColorBrewer', 'Metrics', 'repmis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'magrittr', 'stringi', 'glue', 'yaml'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Iso', 'truncnorm', 'norm', 'missForest', 'missMDA', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caTools', 'matrixStats', 'parallelDist', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'tibble', 'dplyr', 'rlang', 'glue', 'lubridate', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glue', 'lubridate', 'lvmisc', 'pillar', 'pracma', 'purrr', 'Rcpp',
  'rlang', 'signal', 'stringr', 'tibble', 'toOrdinal', 'vroom'

Packages suggested but not available for checking:
  'accdata', 'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ggplot2', 'stringr', 'tidyr', 'xtable'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tableHTML', 'data.table',
  'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'DBI', 'dplyr', 'assertthat', 'dbplyr', 'rlang', 'tidyselect'

Packages suggested but not available for checking:
  'Lahman', 'lubridate', 'odbc', 'RJDBC', 'rJava', 'nycflights13',
  'stringr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'dplyr'
'LazyData' is specified without a 'data' directory
Running examples in 'importar-Ex.R' failed
The error most likely occurred in:

> ### Name: import
> ### Title: This function imports/loads packages as in 'Python', i.e.,
> ###   "import package as alias"
> ### Aliases: import
> 
> ### ** Examples
> 
> import(dplyr, d)
Error in library(package., character.only = TRUE) : 
  there is no package called 'dplyr'
Calls: import -> <Anonymous> -> withCallingHandlers -> library
Execution halted
Packages required but not available:
  'gdata', 'Hmisc', 'chron', 'RODBC', 'readxl', 'writexl', 'haven'

Packages suggested but not available for checking:
  'shiny', 'shinyBS', 'shinythemes', 'compareGroups'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'haven', 'rgdal', 'data.table'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'magrittr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'mvtnorm', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'ggplot2', 'prettydoc', 'rmarkdown', 'R.rsp', 'testthat',
  'xts'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gower', 'parsnip'

Packages suggested but not available for checking:
  'missMethods', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tmvtnorm', 'norm', 'pcaMethods', 'impute'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
impute.mdr: no visible global function definition for 'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
Package required but not available: 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gtools', 'Rcpp', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'R.rsp', 'covr'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gamlss', 'mice', 'purrr', 'extremevalues', 'gamlss.dist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'reshape2'

Packages suggested but not available for checking:
  'testthat', 'caret', 'glmnet', 'pls', 'Cubist', 'ridge', 'gbm',
  'mboost', 'earth'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forecast', 'ggplot2', 'imputeTS', 'reshape2', 'tidyr',
  'zoo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggtext', 'stinepack', 'forecast', 'magrittr', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'knitr', 'zoo', 'timeSeries', 'tis', 'xts',
  'tibble', 'tsibble', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'R.rsp', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'emplik', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'HiClimR', 'RColorBrewer', 'igraph', 'ggplot2', 'gridExtra'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ltm', 'lme4', 'reshape2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'extRemes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kpeaks', 'lhs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'survey'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'backports', 'magrittr', 'plu', 'rlang'

Packages suggested but not available for checking:
  'covr', 'crayon', 'dplyr', 'nombre', 'stringi', 'testthat', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'limma', 'siggenes', 'multtest', 'genefilter', 'RankProd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'ggplot2', 'scales', 'data.table',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'dtw', 'rmarkdown', 'gridExtra', 'testthat', 'dtwclust',
  'parallelDist', 'microbenchmark', 'rucrdtw', 'proxy', 'R.rsp',
  'dendextend', 'reshape2', 'colorspace', 'fastcluster'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'orca', 'purrr', 'testthat', 'tibble', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'ellipsis', 'vctrs', 'pillar', 'data.table', 'rlang',
  'tidyselect', 'grates', 'dplyr', 'clock'

Packages suggested but not available for checking:
  'outbreaks', 'knitr', 'rmarkdown', 'testthat', 'scales', 'roxygen2',
  'ggplot2', 'magrittr', 'covr', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'aweek'

Packages suggested but not available for checking:
  'magrittr', 'outbreaks', 'testthat', 'vdiffr', 'covr', 'knitr',
  'rmarkdown', 'scales', 'cowplot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'matrixStats', 'numDeriv', 'dlnm'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'ggplot2', 'maptools', 'lubridate', 'rgeos'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'rlang', 'dplyr', 'tibble', 'cubature', 'tmvtnorm',
  'ggplot2', 'glm2', 'plyr', 'pracma', 'foreach', 'doParallel', 'binom'

Packages suggested but not available for checking:
  'survey', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ape', 'numDeriv', 'phangorn'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'TauStar', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FNN', 'mvtnorm', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'fGarch', 'lubridate', 'xts', 'RcppBDT', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'permute'

Packages suggested but not available for checking:
  'sp', 'rgeos', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'fs', 'gfonts', 'rlang', 'withr'

Packages suggested but not available for checking:
  'callr', 'knitr', 'rcmdcheck', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'psych', 'matrixStats'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'Rcpp', 'testthat'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'mockery', 'rmarkdown', 'pkgdown', 'testthat',
  'xml2', 'bench'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'magrittr', 'rlang', 'SixSigma'

Packages suggested but not available for checking:
  'glue', 'tibble', 'stringr', 'scales', 'purrr', 'janitor',
  'patchwork', 'forcats', 'broom', 'viridis', 'learnr', 'DoE.base',
  'qcc', 'car', 'qicharts2', 'rsm', 'ggforce', 'ggraph', 'tidygraph',
  'igraph', 'bookdown', 'rmarkdown', 'knitr', 'agricolae', 'RcmdrMisc',
  'gt', 'skimr', 'ggtext'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'XML', 'plyr', 'jsonlite', 'lubridate', 'tibbletime'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'hdi', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'gridExtra', 'ggthemes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
IDM.bootCI: no visible global function definition for 'cov'
IDM.bootCI: no visible global function definition for 'cor'
IDM.bootCI: no visible global function definition for 'quantile'
Undefined global functions or variables:
  cor cov quantile
Consider adding
  importFrom("stats", "cor", "cov", "quantile")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
contrib: no visible global function definition for 'aggregate'
est.expDeath : surv_p: no visible global function definition for
  'survfit'
est.expDeath : surv_p: no visible global function definition for
  'approx'
function1: no visible global function definition for 'coxph.detail'
inference.SMR: no visible global function definition for 'qnorm'
var.expDeath : surv_p: no visible global function definition for
  'survfit'
var.expDeath : surv_p: no visible global function definition for
  'approx'
Undefined global functions or variables:
  aggregate approx coxph.detail qnorm survfit
Consider adding
  importFrom("stats", "aggregate", "approx", "qnorm")
to your NAMESPACE file.
Packages required but not available: 'numDeriv', 'lme4', 'Formula'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'glue', 'magrittr', 'purrr', 'rlang', 'tibble',
  'broom', 'tidyr', 'generics', 'patchwork'

Packages suggested but not available for checking:
  'covr', 'devtools', 'fs', 'knitr', 'nycflights13', 'rmarkdown',
  'stringr', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'magrittr', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'xplorerr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reshape2', 'ggplot2', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'matrixStats'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'seasonal'

Package suggested but not available for checking: 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'readxl', 'writexl', 'optimr', 'data.table', 'plotrix', 'tidyr',
  'ggplot2', 'UpSetR'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'data.table', 'plotrix', 'tidyr', 'ggplot2', 'xlsx',
  'httr', 'jsonlite', 'GGally', 'network', 'RColorBrewer', 'svglite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'geigen', 'ggplot2', 'ggrepel', 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lavaan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'janitor', 'ranger', 'coop', 'ggplot2'

Packages suggested but not available for checking:
  'Hmisc', 'nortest', 'NNS', 'shiny', 'shinythemes', 'shinyWidgets',
  'shinyjs', 'shinycssloaders', 'colourpicker', 'magrittr', 'DT',
  'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'httr', 'jsonlite', 'bit64', 'nanotime', 'plyr'

Packages suggested but not available for checking: 'testthat', 'httptest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'jsonlite', 'httr', 'magrittr', 'purrr', 'rlang', 'tibble',
  'tidyr', 'xts', 'zoo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'plyr', 'iterators', 'doParallel', 'foreach'

Packages suggested but not available for checking:
  'knitr', 'reshape2', 'ClustOfVar', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'data.table'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/gamma_imputation_Jackson_2014.Rnw'
   'inst/doc/risk_score_imputation_Hsu_2009.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sensitivitymult'

Package which this enhances but not available for checking: 'gurobi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'abind', 'relevent'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
entropy: no visible global function definition for 'na.omit'
interinformation: no visible global function definition for 'na.omit'
multiinformation: no visible global function definition for 'na.omit'
mutinformation: no visible global function definition for 'na.omit'
Undefined global functions or variables:
  na.omit
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.
Package required but not available: 'nloptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fields'

Package suggested but not available for checking: 'rNOMADS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
getInfra: no visible global function definition for 'txtProgressBar'
getInfra: no visible global function definition for 'download.file'
getInfra: no visible global function definition for 'setTxtProgressBar'
getInfra : <anonymous>: no visible global function definition for
  'download.file'
Undefined global functions or variables:
  download.file setTxtProgressBar txtProgressBar
Consider adding
  importFrom("utils", "download.file", "setTxtProgressBar",
             "txtProgressBar")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'spaMM', 'proxy', 'blackbox', 'mvtnorm', 'numDeriv', 'viridis',
  'pbapply', 'foreach'

Packages suggested but not available for checking:
  'testthat', 'ranger', 'Rmixmod', 'crayon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ltm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales', 'gridExtra'

Packages suggested but not available for checking:
  'DALEX', 'gower', 'ranger', 'testthat', 'r2d3', 'jsonlite', 'knitr',
  'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library (testthat);
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'dplyr', 'tidyr', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'spdep'

Package suggested but not available for checking: 'INLA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'MatrixModels', 'magrittr', 'plyr', 'rgdal', 'rgeos', 'rlang',
  'withr'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggmap', 'ggplot2', 'ggpolypath', 'INLA', 'knitr',
  'maptools', 'patchwork', 'raster', 'RColorBrewer', 'rgl',
  'rmarkdown', 'shiny', 'sn', 'spatstat.geom', 'spatstat.core',
  'spatstat.data', 'spatstat', 'sphereplot', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'raster'

Packages suggested but not available for checking:
  'dataRetrieval', 'inlmisc', 'knitr', 'maptools', 'rgdal', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'future.apply', 'future'
Package unavailable to check Rd xrefs: 'R.methodsS3'
Packages suggested but not available for checking: 'Rcpp', 'tinytest'
Packages required but not available:
  'checkmate', 'data.table', 'GA', 'htmltools', 'htmlwidgets',
  'igraph', 'knitr', 'leaflet', 'raster', 'rgdal', 'rgeos',
  'rmarkdown', 'scales', 'sp', 'tinytex', 'webshot', 'wordcloud2',
  'xtable', 'yaml'

Packages suggested but not available for checking:
  'alphahull', 'dichromat', 'doParallel', 'doRNG', 'gstat', 'maptools',
  'png', 'remotes', 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'checkmate', 'tm'

Packages suggested but not available for checking:
  'covr', 'DT', 'inlmisc', 'kableExtra', 'knitr', 'pkgdown',
  'rmarkdown', 'RWeka', 'stringi', 'textutils', 'testthat', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'checkmate', 'ggplot2', 'R6', 'torch'

Packages suggested but not available for checking:
  'keras', 'knitr', 'neuralnet', 'plotly', 'rmarkdown', 'tensorflow',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'purrr', 'knitr', 'rmarkdown', 'dplyr', 'nycflights13'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'wordcloud', 'RColorBrewer', 'tm', 'SnowballC', 'ca', 'entropart',
  'metacom', 'stringi', 'R.devices'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'spelling', 'data.table', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'prettyGraphs', 'ExPosition'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'dplyr', 'DT', 'ggbeeswarm', 'ggplot2', 'ggpubr',
  'ggthemes', 'glue', 'patchwork', 'purrr', 'readxl', 'shiny', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'roxygen2', 'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'aphid', 'kmer', 'openssl', 'phylogram', 'RANN', 'seqinr',
  'xml2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'xml2', 'tibble', 'dplyr', 'stringr', 'tidyselect', 'rlang',
  'purrr', 'crayon', 'openssl', 'rappdirs', 'readsdmx'

Packages suggested but not available for checking:
  'tidyverse', 'lubridate', 'prettydoc', 'htmltools', 'kableExtra',
  'knitr', 'rmarkdown', 'markdown', 'magrittr', 'testthat', 'covr',
  'png'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'magrittr', 'RCurl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
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  'bdsmatrix', 'betareg', 'bife', 'biglm', 'blavaan', 'blme', 'brms',
  'censReg', 'cgam', 'clubSandwich', 'coxme', 'cplm', 'crch',
  'datawizard', 'effectsize', 'emmeans', 'epiR', 'estimatr', 'feisr',
  'fixest', 'fungible', 'gam', 'gamlss', 'gamm4', 'gbm', 'gee',
  'geepack', 'GLMMadaptive', 'glmmTMB', 'gmnl', 'gt', 'httr', 'ivreg',
  'JM', 'knitr', 'lavaan', 'lfe', 'lme4', 'lmtest', 'logistf',
  'mclust', 'MCMCglmm', 'merTools', 'metaBMA', 'mice', 'mlogit',
  'multgee', 'nonnest2', 'ordinal', 'panelr', 'parameters', 'parsnip',
  'performance', 'plm', 'poorman', 'pscl', 'psych', 'quantreg',
  'rmarkdown', 'rms', 'robustbase', 'robustlmm', 'rstanarm',
  'rstantools', 'rstudioapi', 'sandwich', 'speedglm', 'spelling',
  'statmod', 'survey', 'testthat', 'tripack', 'truncreg', 'VGAM'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages unavailable to check Rd xrefs: 'bayestestR', 'sandwich', 'performance', 'parameters', 'effectsize'
Running examples in 'insight-Ex.R' failed
The error most likely occurred in:

> ### Name: get_datagrid
> ### Title: Create a reference grid
> ### Aliases: get_datagrid get_datagrid.data.frame get_datagrid.numeric
> ###   get_datagrid.factor get_datagrid.default
> 
> ### ** Examples
> 
> # Add one row to change the "mode" of Species
> data <- rbind(iris, iris[149, ], make.row.names = FALSE)
> 
> # Single variable is of interest; all others are "fixed"
> get_datagrid(data, at = "Sepal.Length")
Error: Package 'bayestestR' is required for this function to work.
  Please install it by running install.packages('bayestestR').
Execution halted
Packages required but not available: 'rJava', 'coda', 'ggplot2', 'InterVA5'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'raster'

Package suggested but not available for checking: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggfittext', 'magrittr', 'progress', 'Rcpp',
  'tibble', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'pcal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'missMDA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fastmatch', 'checkmate', 'assertthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

Packages suggested but not available for checking:
  'curl', 'XML', 'devtools', 'rjson', 'data.table', 'plyr', 'ggplot2',
  'sp', 'pkgbuild', 'testthat', 'mockery', 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
Packages required but not available:
  'ciTools', 'classInt', 'colorspace', 'data.table', 'DHARMa', 'dplyr',
  'evtree', 'fitdistrplus', 'ggplot2', 'insight', 'lubridate',
  'magrittr', 'patchwork', 'scales', 'stringr'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'gstat', 'automap', 'mvtnorm', 'evd', 'doParallel', 'foreach',
  'rgdal'

Package which this enhances but not available for checking: 'psgp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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VignetteBuilder package required for checking but not installed: 'knitr'
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VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'pracma', 'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'copula'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/intcensROC.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ltm', 'foreach', 'doParallel', 'mclust', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ggplot2', 'Biobase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'bootstrap', 'ggplot2', 'limSolve',
  'MultivariateRandomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'DiagrammeR', 'DiagrammeRsvg', 'rsvg', 'gtools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'jsonlite', 'lubridate', 'magrittr', 'tidyr',
  'tibble', 'rlang', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgdal', 'diffeR', 'raster', 'ggplot2', 'reshape2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'igraph', 'intergraph', 'sna', 'spatstat.geom', 'spdep',
  'viridis'

Packages suggested but not available for checking: 'spatstat', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GenomicRanges', 'GenomeInfoDb', 'IRanges', 'GenomicAlignments',
  'biomaRt', 'Rsamtools', 'rPref', 'DESeq2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'msm', 'car', 'officer', 'flextable'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'crayon', 'cli', 'generics', 'jtools', 'rlang', 'tibble'

Packages suggested but not available for checking:
  'broom', 'cowplot', 'ggstance', 'glue', 'huxtable', 'lme4',
  'margins', 'sandwich', 'survey', 'knitr', 'rmarkdown', 'testthat',
  'vdiffr'

Packages which this enhances but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
interact: no visible global function definition for 'cor'
standardize.matrix: no visible binding for global variable 'var'
standardize.matrix: no visible binding for global variable 'sd'
Undefined global functions or variables:
  cor sd var
Consider adding
  importFrom("stats", "cor", "sd", "var")
to your NAMESPACE file.
Packages suggested but not available for checking: 'doParallel', 'foreach'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reshape2', 'tkrplot', 'xlsx', 'plyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'sandwich', 'Lmoments', 'doParallel', 'foreach', 'lfe',
  'gridExtra', 'ggplotify', 'RColorBrewer', 'pcse', 'gtable',
  'mvtnorm', 'pROC', 'ModelMetrics', 'Rcpp', 'lmtest', 'AER', 'future',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'colorSpec', 'CircStats', 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'network', 'igraph'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'interim', 'shiny', 'shinyBS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'geometries'

Packages suggested but not available for checking:
  'covr', 'sfheaders', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'reshape2'

Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'abind', 'arm', 'dplyr', 'purrr', 'interactionTest'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'deldir', 'RcppEigen'

Packages suggested but not available for checking: 'sp', 'Deriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'tidyr', 'rlang', 'ggplot2', 'scales',
  'ggbeeswarm', 'patchwork', 'aplot', 'rstudioapi', 'rmarkdown',
  'flextable', 'officer', 'english', 'RColorBrewer', 'moonBook'

Packages suggested but not available for checking:
  'knitr', 'PairedData', 'glue'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdisop', 'enviPat', 'plyr', 'foreach', 'doParallel', 'DBI',
  'RSQLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'randomForest', 'AUC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'NMF'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'curl', 'readxl'

Packages suggested but not available for checking: 'testthat', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'perm', 'Icens', 'MLEcens'

Package suggested but not available for checking: 'coin'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
interventionEffects: no visible binding for global variable 'sd'
interventionEffects: no visible global function definition for 'pt'
interventionEffects: no visible global function definition for 'sd'
interventionalInference: no visible global function definition for 'sd'
interventionalInferenceAdvanced: no visible global function definition
  for 'sd'
linesROC: no visible global function definition for 'segments'
plotMaxML: no visible global function definition for 'segments'
Undefined global functions or variables:
  pt sd segments
Consider adding
  importFrom("graphics", "segments")
  importFrom("stats", "pt", "sd")
to your NAMESPACE file.
Packages required but not available:
  'clinUtils', 'cowplot', 'flextable', 'ggplot2', 'ggrepel',
  'magrittr', 'officer', 'plyr', 'reshape2', 'scales'

Packages suggested but not available for checking:
  'htmltools', 'knitr', 'rmarkdown', 'pander', 'testthat', 'xml2',
  'dplyr', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'ggplot2', 'dplyr', 'tidyr', 'tibble', 'lme4', 'agricolae',
  'FactoMineR', 'emmeans', 'purrr', 'stringr', 'stringi', 'DT'

Packages suggested but not available for checking:
  'gsheet', 'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'gstat', 'raster', 'Rcpp', 'Rdpack', 'RcppArmadillo'

Packages suggested but not available for checking:
  'doParallel', 'foreach', 'latticeExtra', 'gridExtra', 'testthat',
  'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'maxLik'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'mice', 'dplyr', 'tibble', 'foreach', 'doParallel'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'NMF', 'mclust', 'InterSIM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SQUAREM', 'dplyr', 'rlist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'yaImpute'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'FNN', 'ggplot2', 'knitr', 'MCMCpack', 'pheatmap', 'Rcpp',
  'reshape2', 'rlang', 'salso', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'genetics', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'plyr', 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'msm', 'tmvtnorm', 'mvtnorm', 'MHadaptive'

Package suggested but not available for checking: 'smoothmest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'Hmisc', 'memisc', 'plyr', 'reshape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'magrittr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'libcoin'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'earth', 'lmtest', 'quantreg', 'robustbase',
  'sandwich', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'mboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'rlang', 'plyr'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'magrittr', 'tidyr', 'plotly', 'plyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'e1071', 'GameTheoryAllocation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'tibble', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sparseLRMatrix', 'glue'

Packages suggested but not available for checking:
  'covr', 'testthat', 'igraph', 'igraphdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'optimx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'iNZightPlots', 'testthat', 'covr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'chron', 'colorspace', 'dichromat', 'emmeans', 'hexbin', 'hms',
  'iNZightMR', 'iNZightTools', 'lubridate', 'magrittr', 'quantreg',
  'rlang', 's20x', 'scales', 'survey'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'forcats', 'ggbeeswarm', 'ggmosaic', 'ggplot2',
  'ggridges', 'ggthemes', 'gridSVG', 'hextri', 'jsonlite', 'knitr',
  'plotly', 'RColorBrewer', 'testthat', 'tidyr', 'viridis', 'waffle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'dplyr', 'ggplot2', 'ggrepel', 'ggtext', 'iNZightPlots',
  'multcomp', 'patchwork'

Packages suggested but not available for checking:
  'covr', 'iNZightTools', 'survey', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'chron', 'dplyr', 'forcats', 'glue', 'haven', 'magrittr', 'RcppTOML',
  'readr', 'readxl', 'srvyr', 'stringr', 'styler', 'survey', 'tibble',
  'tidyr', 'lubridate', 'validate', 'zoo'

Packages suggested but not available for checking:
  'covr', 'jsonlite', 'RCurl', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'colorspace', 'dplyr', 'forcats', 'ggplot2', 'ggtext', 'glue',
  'gridExtra', 'magrittr', 'patchwork', 'rlang', 'tidyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'plot3D', 'lpSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'data.table', 'ggplot2', 'plotly', 'colorspace',
  'colorRamps', 'RColorBrewer', 'shiny', 'reshape2', 'stringi', 'httr',
  'knitr', 'Rcpp'

Packages suggested but not available for checking:
  'Rcpp', 'testthat', 'withr', 'ComplexHeatmap', 'keyring',
  'PlayerRatings', 'xtable', 'shinyjs', 'colourpicker', 'bsplus', 'DT',
  'kableExtra', 'markdown', 'igraph', 'shinydashboard'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'assertthat', 'magrittr', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'zip'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Biostrings'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gplots', 'psych'

Package suggested but not available for checking: 'lavaan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'mco'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'filenamer', 'stringr'

Packages suggested but not available for checking:
  'XML', 'rhdf5', 'yaml', 'jsonlite', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'eurostat', 'magrittr', 'tidyr', 'forcats', 'plyr',
  'lubridate', 'knitr', 'kableExtra', 'tibble', 'readxl', 'rlang',
  'assertthat', 'glue', 'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'spelling', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
File 'iotools/libs/x64/iotools.dll':
  Found non-API calls to R: 'R_GetConnection', 'R_ReadConnection',
    'R_WriteConnection'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'reticulate', 'stringr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'stringr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rlang', 'vctrs', 'AsioHeaders'

Packages suggested but not available for checking:
  'bignum', 'blob', 'crayon', 'dplyr', 'fuzzyjoin', 'knitr', 'pillar',
  'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'treemap', 'ape'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringi'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'expm', 'KRIS', 'fpc', 'LPCM', 'apcluster', 'Rmixmod'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'shiny', 'txtq'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'future', 'promises', 'redux'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'testthat', 'lubridate', 'eeptools', 'hash', 'kableExtra',
  'gtsummary', 'effsize', 'stringr', 'tidyverse', 'tidyselect',
  'gmodels', 'lmtest', 'zoo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'gridExtra', 'readbitmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gdistance', 'sp', 'raster', 'rgeos'

Packages suggested but not available for checking:
  'geoR', 'gstat', 'gdata', 'spatstat', 'rgdal', 'testthat', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'curl', 'rlang', 'jsonlite', 'magrittr', 'dplyr',
  'lubridate', 'purrr', 'sjlabelled'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'tidyr', 'mlr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'apcluster', 'dplyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'remotes'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'sommer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'png'

Package suggested but not available for checking: 'maps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'purrr', 'rlang', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'lme4', 'mvtnorm', 'rmarkdown', 'roxygen2', 'spelling',
  'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'prodlim'

Packages suggested but not available for checking:
  'mvtnorm', 'mlbench', 'TH.data', 'randomForest', 'party'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doSNOW', 'foreach', 'ggplot2', 'mvtnorm', 'Rcpp', 'reshape2',
  'scales', 'RcppEigen'

Packages suggested but not available for checking:
  'caret', 'knitr', 'R.rsp', 'rmarkdown', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ape', 'phangorn', 'plyr', 'seqinr', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'AsioHeaders', 'stringi', 'triebeard', 'BH'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'haven', 'hipread', 'purrr', 'R6', 'raster', 'readr',
  'rlang', 'tibble', 'tidyselect', 'xml2', 'zeallot'

Packages suggested but not available for checking:
  'DT', 'ggplot2', 'htmltools', 'knitr', 'rgdal', 'rmarkdown',
  'rstudioapi', 'scales', 'sf', 'sp', 'shiny', 'testthat', 'covr',
  'biglm', 'DBI', 'RSQLite', 'dbplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggforce', 'ggplot2', 'stringr', 'lavaan', 'reshape2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'extrafont', 'readxl', 'cowplot', 'gplots'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'isotone'

Packages suggested but not available for checking:
  'mice', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'nleqslv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'MplusAutomation', 'tidyverse', 'mvtnorm', 'dplyr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'geepack'

Package suggested but not available for checking: 'survey'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'miscTools', 'qcc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R6'

Packages suggested but not available for checking:
  'Rmpi', 'knitr', 'testthat', 'withr', 'mlr', 'ParamHelpers',
  'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/irace-package.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mpath', 'xgboost'

Packages suggested but not available for checking:
  'R.rsp', 'DiagrammeR', 'Hmisc'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'Rdpack', 'GGMncv', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'repr'

Packages suggested but not available for checking: 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'sp', 'e1071', 'Rdpack', 'fBasics', 'imager', 'reshape2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'twang', 'survey', 'ggplot2', 'ggthemes', 'rstanarm',
  'RSelenium', 'rvest', 'DisImpact', 'forcats'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'RcppRoll', 'chk'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DiagrammeR', 'ggplot2', 'curl', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gsheet', 'dplyr', 'reshape2', 'ggplot2', 'ggsci', 'WDI', 'scales'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Invalid NAMESPACE file, parsing gives:
Error in utils::packageVersion("dplyr"): there is no package called 'dplyr'

See section 'Package namespaces' in the 'Writing R Extensions' manual.
Packages required but not available:
  'pracma', 'RCurl', 'seismicRoll', 'signal', 'stringr', 'XML'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'repr', 'evaluate', 'IRdisplay', 'pbdZMQ', 'crayon', 'jsonlite',
  'uuid', 'digest'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'geepack', 'data.table'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'MEMSS'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'scales', 'plyr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'irrICC-Ex.R' failed
The error most likely occurred in:

> ### Name: ci.ICC1a
> ### Title: Confidence Interval of Intraclass Correlation Coefficient (ICC)
> ###   under ANOVA Model 1A.
> ### Aliases: ci.ICC1a
> 
> ### ** Examples
> 
> #iccdata3 is a small dataset that comes with the package. Use it as follows:
> library(irrICC)
> iccdata3 #see what the iccdata3 dataset looks like
  Subject Rater1 Rater2 Rater3
1       1     12     18     NA
2       2     14     12     13
3       3     19     17     21
4       4     24     30     NA
> ci.ICC1a(iccdata3)
Error in loadNamespace(x) : there is no package called 'plyr'
Calls: ci.ICC1a ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package required but not available: 'irr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'fGarch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'shiny', 'shinydashboard', 'shinycssloaders', 'readxl',
  'mirt', 'psych', 'WrightMap', 'writexl', 'irtoys'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sm', 'ltm'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'statmod', 'reshape2', 'dplyr', 'tidyr', 'purrr', 'ggplot2', 'rlang',
  'gridExtra'

Package suggested but not available for checking: 'mirt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'moments'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'ggplot2', 'markdown', 'knitr', 'rmarkdown', 'tibble', 'pillar'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DiagrammeR', 'tidyr'

Packages suggested but not available for checking:
  'lme4', 'mirt', 'knitr', 'flextable', 'reshape2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ltm', 'mirt', 'fastGHQuad'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinyAce', 'beeswarm', 'CTT', 'ltm', 'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'igraph', 'biclust'
Packages required but not available:
  'colorDF', 'crayon', 'tibble', 'dplyr', 'glue', 'tidyr', 'readr',
  'magrittr', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'tinytest', 'affy', 'Biobase', 'xcms', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'gtools', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
isbf: no visible global function definition for 'var'
isbf: no visible global function definition for 'qnorm'
isbfReg: no visible global function definition for 'var'
isbfReg: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  qnorm var
Consider adding
  importFrom("stats", "qnorm", "var")
to your NAMESPACE file.
Packages required but not available: 'ranger', 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'VGAM'
Malformed Description field: should contain one or more complete sentences.
residualplot: no visible global function definition for 'predict'
residualplot: no visible global function definition for 'rstandard'
residualplot: no visible global function definition for
  'complete.cases'
residualplot: no visible global function definition for 'points'
residualplot: no visible global function definition for 'lines'
residualplot: no visible global function definition for 'smooth.spline'
residualplot: no visible global function definition for 'sd'
residualplot: no visible global function definition for 'rgb'
residualplot: no visible global function definition for 'polygon'
Undefined global functions or variables:
  complete.cases lines points polygon predict rgb rstandard sd
  smooth.spline
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "lines", "points", "polygon")
  importFrom("stats", "complete.cases", "predict", "rstandard", "sd",
             "smooth.spline")
to your NAMESPACE file.
Running examples in 'isdals-Ex.R' failed
The error most likely occurred in:

> ### Name: alligator
> ### Title: Alligator food preference
> ### Aliases: alligator
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(alligator)
> library(VGAM)
Error in library(VGAM) : there is no package called 'VGAM'
Execution halted
Packages required but not available:
  'ade4', 'geometry', 'geosphere', 'maptools', 'pdist', 'raster',
  'rgdal', 'sp', 'colorRamps', 'virtualspecies', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tibble', 'data.table', 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'caret', 'irlba'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'qgraph', 'glmnet'

Package suggested but not available for checking: 'IsingSampler'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'plyr', 'magrittr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

Packages suggested but not available for checking:
  'knitr', 'lars', 'xfun', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xlsx', 'rJava', 'xlsxjars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'matrixcalc', 'Formula', 'lme4'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'magick', 'microbenchmark', 'rmarkdown',
  'sf', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Iso', 'isotone'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'readxl', 'dplyr', 'data.table', 'deSolve', 'rlang',
  'metR', 'shiny', 'shinyFiles', 'shinythemes', 'shinyjs', 'DT',
  'ggplot2', 'ggrepel', 'qgraph', 'writexl', 'R.utils', 'fs'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'plyr', 'sp', 'magrittr', 'foreach'

Packages suggested but not available for checking:
  'dendextend', 'doParallel', 'dplyr', 'ggplot2', 'gridExtra',
  'kableExtra', 'knitr', 'pvclust', 'rmarkdown', 'rasterVis',
  'viridisLite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gtools', 'dplyr', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
C.cal: no visible global function definition for 'as.stepfun'
bandwidth.choose.cv: no visible global function definition for 'isoreg'
g.density: no visible global function definition for 'as.stepfun'
g.density: no visible global function definition for 'dnorm'
h.density: no visible global function definition for 'dnorm'
iso.bt.unit: no visible global function definition for 'quantile'
iso.bt.unit.sub: no visible global function definition for 'isoreg'
iso.bt.unit.sub: no visible global function definition for 'as.stepfun'
iso.bt.wald.unit: no visible global function definition for 'var'
iso.ci: no visible global function definition for 'isoreg'
iso.ci.transform.unit: no visible global function definition for
  'as.stepfun'
Undefined global functions or variables:
  as.stepfun dnorm isoreg quantile var
Consider adding
  importFrom("stats", "as.stepfun", "dnorm", "isoreg", "quantile", "var")
to your NAMESPACE file.
Packages required but not available: 'circular', 'TSP', 'combinat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'Unicode'
Note: found 7523 marked UTF-8 strings
Packages required but not available: 'Rcpp', 'osqp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Iso', 'xtable', 'Biobase', 'affy', 'ff'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'shades', 'viridisLite', 'knitr', 'rmarkdown', 'devtools',
  'spelling', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'RANN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

Package suggested but not available for checking: 'proxy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'IsoplotR', 'httpuv', 'jsonlite', 'later'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'futile.logger', 'RcppEigen'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/ISOpureRGuide.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'latticeExtra', 'numDeriv', 'raster', 'rasterVis', 'sp', 'spaMM',
  'viridisLite'

Packages suggested but not available for checking:
  'gmp', 'magick', 'maps', 'maptools', 'RandomFields', 'rgeos',
  'rgdal', 'rgl', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Iso'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'nnls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coneproj'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fgui', 'runjags', 'colorspace', 'ellipse', 'plotrix'

Package suggested but not available for checking: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'data.table', 'dplyr', 'latex2exp', 'magrittr', 'pillar',
  'purrr', 'Rcpp', 'rlang', 'rstan', 'tibble', 'tidyr', 'tidyselect',
  'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'bayesplot', 'covr', 'ggdist', 'ggplot2', 'ggraph', 'gridBase',
  'gridExtra', 'here', 'igraph', 'knitr', 'readxl', 'rmarkdown',
  'testthat', 'tidygraph', 'tidyverse', 'viridisLite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'outliertree', 'jsonlite', 'mlbench', 'MLmetrics', 'kernlab',
  'knitr', 'rmarkdown', 'kableExtra'

Package which this enhances but not available for checking: 'SparseM'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R2jags', 'abind', 'R2WinBUGS', 'doParallel', 'foreach', 'httr',
  'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr', 'curl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ibd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'R6', 'Rdpack', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'writexl', 'raster', 'dplyr', 'tidyr', 'RCurl', 'ggplot2',
  'maps', 'httr'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'magrittr', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(magrittr)
  Error in library(magrittr) : there is no package called 'magrittr'
  Execution halted
Packages required but not available: 'jsonlite', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinyBS', 'shinyWidgets', 'Cairo', 'ggplot2', 'gtools', 'shiny',
  'plotly', 'rstudioapi', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ConsensusClusterPlus', 'keras', 'tensorflow', 'philentropy'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/iSubGenGuide.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'qvalue', 'fastICA', 'JADE'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat', 'readxl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'raster', 'maptools', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Namespace in Imports field not imported from: 'MASS'
  All declared Imports should be used.
Packages required but not available:
  'partitions', 'VGAM', 'ape', 'apTreeshape', 'geiger', 'gtools'

Depends: includes the non-default packages:
  'partitions', 'VGAM', 'MASS', 'ape', 'apTreeshape', 'geiger',
  'gtools'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'RUnit', 'foreach'
Packages required but not available: 'quadprog', 'randtoolbox'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'iterators', 'gmp', 'arrangements'

Packages suggested but not available for checking:
  'foreach', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'iterators'

Package suggested but not available for checking: 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'network', 'circlize', 'RColorBrewer', 'reshape2', 'maps',
  'blockmodeling', 'igraph', 'dplyr', 'plyr', 'cowplot', 'ggplot2',
  'GGally', 'fastmatch', 'intergraph', 'sna', 'tnet', 'WDI',
  'networkDynamic'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'corpcor'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'NMF', 'pcalg', 'Rgraphviz'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggfortify', 'readr', 'tiff', 'janitor',
  'ggcorrplot', 'rlang', 'compositions', 'tidyr', 'broom', 'tibble',
  'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'Rglpk', 'ncvreg', 'svMisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotfunctions'

Packages suggested but not available for checking:
  'knitr', 'xtable', 'sp', 'data.table'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'car', 'forecast', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httpcache', 'glue', 'httr', 'jsonlite', 'magrittr', 'R6',
  'tidyr', 'stringi', 'rlang', 'data.table', 'crayon', 'clisymbols'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'dplyr', 'ecospat', 'fastshap', 'ggplot2', 'isotree',
  'ncdf4', 'outliertree', 'patchwork', 'raster', 'rlang', 'ROCit',
  'sf', 'stars', 'stringr', 'tidyselect'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ucminf', 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'purrr', 'rsample'

Packages suggested but not available for checking: 'icsw', 'haven'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'gurobi'
Packages required but not available:
  'AER', 'coda', 'data.table', 'Rcpp', 'rgl', 'sandwich',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'haven', 'MCMCpack', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'randomForest', 'dplyr', 'rlang'

Package suggested but not available for checking: 'locClass'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'reshape2', 'ggplot2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

Packages suggested but not available for checking:
  'gurobi', 'slam', 'cplexAPI', 'lpSolveAPI', 'Rmosek', 'testthat',
  'data.table', 'splines2', 'future.apply', 'future', 'knitr',
  'rmarkdown', 'pander', 'AER', 'lsei', 'ggplot2', 'gridExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'AER', 'sandwich', 'lmtest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lmtest', 'sandwich', 'AER', 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'car', 'Formula', 'lmtest'

Packages suggested but not available for checking:
  'AER', 'effects', 'knitr', 'insight', 'rmarkdown', 'sandwich',
  'testthat', 'modelsummary', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'numDeriv', 'nleqslv', 'ahaz', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'forecast', 'spelling', 'testthat', 'lmtest'

Package which this enhances but not available for checking: 'texreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'trust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'waveslim', 'fda', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'rlang', 'ggplot2', 'stringr', 'dplyr', 'tidyr',
  'igraph', 'readr', 'yaml', 'tibble'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'extraDistr', 'rootSolve', 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'assertthat', 'R6'

Packages suggested but not available for checking:
  'coala', 'knitr', 'rmarkdown', 'testthat', 'snow'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'tm', 'stringi', 'bracer', 'mgsub', 'qdapRegex', 'stringr',
  'data.table', 'xmlconvert', 'jsonlite', 'anytime', 'cffr',
  'rbibutils', 'install.load'
Packages required but not available: 'Rcpp', 'qvalue', 'dplyr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'R6', 'Rcpp', 'zlibbioc', 'RcppArmadillo', 'RcppProgress',
  'Rhtslib'

Packages suggested but not available for checking:
  'coala', 'knitr', 'markdown', 'rmarkdown', 'scrm', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'imputeYn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'partitions', 'DescTools', 'gmp', 'mvp', 'multicool',
  'JuliaConnectoR', 'Ryacas', 'gmpoly'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fBasics', 'Benchmarking', 'dplyr', 'ggplot2', 'foreach',
  'doParallel', 'reshape', 'tidyr', 'scales', 'plyr', 'rlang'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'corpcor', 'ClusterR', 'qvalue', 'lfa', 'irlba', 'rsvd'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'dplyr', 'tidyr', 'ggplot2', 'rbenchmark', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'clue'

Packages suggested but not available for checking: 'ICS', 'ICSNP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'formatR', 'glue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'digest', 'fst', 'posterior', 'purrr', 'qs', 'R2jags',
  'rjags', 'rlang', 'targets', 'tarchetypes', 'tibble', 'withr'

Packages suggested but not available for checking:
  'dplyr', 'fs', 'knitr', 'R.utils', 'rmarkdown', 'testthat', 'tidyr',
  'visNetwork'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjags', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'dplyr', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjson', 'naturalsort'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'dplyr', 'testthat'
Note: found 1 marked UTF-8 string
Running examples in 'janeaustenr-Ex.R' failed
The error most likely occurred in:

> ### Name: austen_books
> ### Title: Tidy data frame of Jane Austen's 6 completed, published novels
> ### Aliases: austen_books
> 
> ### ** Examples
> 
> 
> library(dplyr)
Error in library(dplyr) : there is no package called 'dplyr'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'lifecycle', 'lubridate', 'magrittr', 'purrr', 'rlang',
  'stringi', 'stringr', 'snakecase', 'tidyselect', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'sf', 'testthat', 'tibble', 'tidygraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'crul', 'tibble'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'geosphere', 'lifecycle', 'magrittr', 'purrr', 'rlang',
  'sf', 'stringr', 'tibble', 'tidyr', 'units', 'vctrs'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'dplyr', 'httr', 'pillar', 'progress', 'purrr', 'rlang',
  'stringi', 'stringr', 'tibble', 'tidyr', 'vctrs'

Packages suggested but not available for checking: 'keyring', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rjags', 'R2jags', 'tidyverse', 'tidyr', 'ggplot2', 'ggExtra',
  'gridExtra', 'mcmcplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'GA'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'evaluate', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'reactR', 'stringr', 'magrittr', 'readr',
  'jsonlite', 'httpuv', 'mime', 'cli', 'ids', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'RColorBrewer', 'maps', 'rworldmap', 'ggplot2', 'sp'

Package suggested but not available for checking: 'ncdf4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'scales', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gridExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'png', 'ggplot2'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bookdown', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'pcaPP', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'abind', 'ggplot2', 'readr', 'stringr', 'lubridate',
  'narray', 'imputeTS', 'scales', 'tictoc', 'modeest', 'moments',
  'philentropy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'renv', 'remotes', 'desc', 'docopt'

Packages suggested but not available for checking:
  'testthat', 'withr', 'packrat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'org.Hs.eg.db', 'AnnotationDbi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'extraDistr'

Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'MUS', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'fPortfolio', 'caret', 'magrittr', 'tcltk2', 'zoo'

Packages suggested but not available for checking:
  'BurStFin', 'data.table', 'DescTools', 'fAssets', 'fBasics',
  'forecast', 'FRAPO', 'h2o', 'iClick', 'keras', 'quantmod', 'rugarch',
  'tensorflow', 'tibble', 'timeDate', 'timeSeries', 'timetk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.