Error(s) in re-building vignettes:
--- re-building 'Ch_analysing_longitudinal_dataI.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools

Error: processing vignette 'Ch_analysing_longitudinal_dataI.Rnw' failed with diagnostics:
 chunk 2 (label = ALDI-setup) 
Error in library("lme4") : there is no package called 'lme4'

--- failed re-building 'Ch_analysing_longitudinal_dataI.Rnw'

--- re-building 'Ch_analysing_longitudinal_dataII.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools

Error: processing vignette 'Ch_analysing_longitudinal_dataII.Rnw' failed with diagnostics:
 chunk 2 (label = ALDII-gee) 
Error in library("gee") : there is no package called 'gee'

--- failed re-building 'Ch_analysing_longitudinal_dataII.Rnw'

--- re-building 'Ch_analysis_of_variance.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_analysis_of_variance.Rnw'

--- re-building 'Ch_cluster_analysis.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools

Error: processing vignette 'Ch_cluster_analysis.Rnw' failed with diagnostics:
 chunk 2 (label = thissetup) 
Error in library("mclust") : there is no package called 'mclust'

--- failed re-building 'Ch_cluster_analysis.Rnw'

--- re-building 'Ch_conditional_inference.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools

Error: processing vignette 'Ch_conditional_inference.Rnw' failed with diagnostics:
 chunk 2 (label = CI-roomwidth-ties) 
Error in library("coin") : there is no package called 'coin'

--- failed re-building 'Ch_conditional_inference.Rnw'

--- re-building 'Ch_density_estimation.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009

Error: processing vignette 'Ch_density_estimation.Rnw' failed with diagnostics:
 chunk 2 (label = DE-setup) 
Error in library("flexmix") : there is no package called 'flexmix'

--- failed re-building 'Ch_density_estimation.Rnw'

--- re-building 'Ch_errata.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_errata.Rnw'

--- re-building 'Ch_introduction_to_R.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_introduction_to_R.Rnw'

--- re-building 'Ch_logistic_regression_glm.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
--- finished re-building 'Ch_logistic_regression_glm.Rnw'

--- re-building 'Ch_meta_analysis.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools

Error: processing vignette 'Ch_meta_analysis.Rnw' failed with diagnostics:
 chunk 2 (label = MA-smoking-OR) 
Error in library("rmeta") : there is no package called 'rmeta'

--- failed re-building 'Ch_meta_analysis.Rnw'

--- re-building 'Ch_multidimensional_scaling.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools

Error: processing vignette 'Ch_multidimensional_scaling.Rnw' failed with diagnostics:
 chunk 2 (label = MDS-setup) 
Error in library("ape") : there is no package called 'ape'

--- failed re-building 'Ch_multidimensional_scaling.Rnw'

--- re-building 'Ch_multiple_linear_regression.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_multiple_linear_regression.Rnw'

--- re-building 'Ch_principal_components_analysis.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_principal_components_analysis.Rnw'

--- re-building 'Ch_recursive_partitioning.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools

Error: processing vignette 'Ch_recursive_partitioning.Rnw' failed with diagnostics:
 chunk 2 (label = RP-setup) 
Error in library("vcd") : there is no package called 'vcd'

--- failed re-building 'Ch_recursive_partitioning.Rnw'

--- re-building 'Ch_simple_inference.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools

Error: processing vignette 'Ch_simple_inference.Rnw' failed with diagnostics:
 chunk 2 (label = SI-setup) 
Error in library("vcd") : there is no package called 'vcd'

--- failed re-building 'Ch_simple_inference.Rnw'

--- re-building 'Ch_survival_analysis.Rnw' using Sweave
Loading required package: HSAUR
Loading required package: tools

Error: processing vignette 'Ch_survival_analysis.Rnw' failed with diagnostics:
 chunk 2 (label = SA-setup) 
Error in library("coin") : there is no package called 'coin'

--- failed re-building 'Ch_survival_analysis.Rnw'

--- re-building 'preface.Rnw' using Sweave
--- finished re-building 'preface.Rnw'

SUMMARY: processing the following files failed:
  'Ch_analysing_longitudinal_dataI.Rnw'
  'Ch_analysing_longitudinal_dataII.Rnw'
  'Ch_cluster_analysis.Rnw'
  'Ch_conditional_inference.Rnw'
  'Ch_density_estimation.Rnw' 'Ch_meta_analysis.Rnw'
  'Ch_multidimensional_scaling.Rnw'
  'Ch_recursive_partitioning.Rnw'
  'Ch_simple_inference.Rnw' 'Ch_survival_analysis.Rnw'

Error: Vignette re-building failed.
Execution halted