Packages required but not available: 'ape', 'vegan'

Packages suggested but not available for checking:
  'brglm', 'circular', 'corpcor', 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'png', 'FrF2', 'DoE.base', 'FrF2.catlg128'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'stringi', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gridGeometry', 'grImport2', 'purrr', 'jpeg', 'png', 'R6', 'rlang',
  'stringr', 'tibble'

Packages suggested but not available for checking:
  'animation', 'ggplot2', 'gifski', 'gridpattern', 'magick',
  'rayrender', 'rayvertex', 'readobj', 'rgl', 'systemfonts',
  'testthat', 'tweenr', 'vdiffr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'DiagrammeR', 'emmeans', 'igraph', 'lme4', 'multcomp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gh', 'httr', 'jsonlite', 'fs', 'crayon', 'clisymbols', 'lubridate',
  'memoise'

Packages suggested but not available for checking:
  'spelling', 'readr', 'covr', 'testthat', 'gert', 'knitr',
  'rmarkdown', 'usethis', 'magrittr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'ellipsis', 'fansi', 'glue', 'lifecycle', 'rlang',
  'utf8', 'vctrs'

Packages suggested but not available for checking:
  'bit64', 'debugme', 'DiagrammeR', 'dplyr', 'formattable', 'ggplot2',
  'knitr', 'lubridate', 'nanotime', 'nycflights13', 'palmerpenguins',
  'rmarkdown', 'scales', 'stringi', 'testthat', 'tibble', 'units',
  'vdiffr', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'scales', 'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nleqslv', 'BB'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fastcluster', 'lubridate', 'ggplot2', 'reshape2', 'scales', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'stringr', 'tibble', 'tictoc', 'tidyselect', 'data.table',
  'lubridate', 'plotly', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'processx'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'openssl', 'magrittr', 'purrr', 'uuid', 'httr',
  'jsonlite', 'rjson'

Packages suggested but not available for checking: 'testthat', 'yaml'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

Packages suggested but not available for checking:
  'odds.converter', 'tidyverse', 'pinnacle.API', 'Lahman'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'devtools', 'kableExtra', 'knitr', 'lubridate', 'rmarkdown',
  'rnaturalearthdata', 'sf', 'tidyverse', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Note: found 2048 marked UTF-8 strings
Packages required but not available: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'entropy', 'doParallel', 'matrixStats', 'Rcpp',
  'RcppParallel', 'FNN', 'irlba', 'mclust', 'impute', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arrow', 'cli', 'digest', 'ellipsis', 'filelock', 'fs', 'glue',
  'httr', 'jsonlite', 'lifecycle', 'magrittr', 'mime', 'openssl',
  'rappdirs', 'rlang', 'tibble', 'whisker', 'withr', 'yaml', 'zip'

Packages suggested but not available for checking:
  'AzureStor', 'data.table', 'gitcreds', 'knitr', 'Microsoft365R',
  'mockery', 'paws.storage', 'qs', 'R.utils', 'rmarkdown', 'rsconnect',
  'shiny', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'splitstackshape', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gtools', 'xtable'

Package suggested but not available for checking: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'miniUI', 'rstudioapi', 'shiny', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'modelr', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'checkmate'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
plot.pred.int: no visible global function definition for 'plot.default'
plot.pred.int: no visible global function definition for 'axis'
plot.pred.int: no visible global function definition for 'box'
plot.pred.int : cidist: no visible global function definition for
  'ecdf'
plot.pred.int : negcidist: no visible global function definition for
  'ecdf'
plot.pred.int : pi.col.fun: no visible global function definition for
  'gray'
plot.pred.int: no visible global function definition for 'segments'
plot.pred.int: no visible global function definition for 'points'
plot.pred.int: no visible global function definition for 'abline'
pred.int: no visible binding for global variable 'sd'
prop.test.mult: no visible global function definition for 'qnorm'
sim.basic: no visible global function definition for 'rbinom'
sim.basic: no visible global function definition for 'rnorm'
t.test.mult: no visible global function definition for 'qt'
Undefined global functions or variables:
  abline axis box ecdf gray plot.default points qnorm qt rbinom rnorm
  sd segments
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "abline", "axis", "box", "plot.default",
             "points", "segments")
  importFrom("stats", "ecdf", "qnorm", "qt", "rbinom", "rnorm", "sd")
to your NAMESPACE file.
Packages required but not available:
  'plyr', 'ggplot2', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'foreach', 'doParallel', 'hdrcde',
  'rfinterval', 'ranger'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'XML2R', 'plyr', 'hexbin'

Packages suggested but not available for checking:
  'DBI', 'dplyr', 'RSQLite', 'knitr', 'animation', 'shiny', 'testthat',
  'ggsubplot', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mclust', 'corpcor', 'runjags', 'rstan', 'bayesmix', 'rjags',
  'mvtnorm', 'bayesplot'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'semver'

Packages suggested but not available for checking:
  'DBI', 'RPostgreSQL', 'shiny', 'testthat', 'randomForest',
  'topicmodels'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'httr'

Packages suggested but not available for checking:
  'httptest', 'knitr', 'magrittr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'dplyr', 'data.table', 'htmltools', 'htmlwidgets'

Packages suggested but not available for checking:
  'ggplot2', 'jsonlite', 'lubridate', 'listviewer', 'openxlsx',
  'basictabler', 'shiny', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'rjson', 'tibble', 'purrr', 'lubridate', 'magrittr', 'dplyr',
  'rlang', 'stringr', 'readr', 'digest', 'fs'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

Packages suggested but not available for checking:
  'dplyr', 'forcats', 'ggbeeswarm', 'ggplot2', 'ggrepel', 'irr',
  'knitr', 'markdown', 'rmarkdown', 'spelling', 'testthat', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jpeg', 'tiff'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'beepr', 'cli', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmlwidgets', 'shiny', 'miniUI'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'checkmate', 'htmltools', 'knitr', 'labelVector',
  'magrittr', 'reshape2', 'scales'

Packages suggested but not available for checking:
  'dplyr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinythemes', 'shinydashboard'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'callr', 'cli', 'crayon', 'desc', 'prettyunits', 'R6', 'rprojroot',
  'withr'

Packages suggested but not available for checking:
  'Rcpp', 'cpp11', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'callr', 'cli', 'curl', 'filelock', 'glue', 'jsonlite',
  'prettyunits', 'R6', 'processx', 'rappdirs'

Packages suggested but not available for checking:
  'covr', 'debugme', 'desc', 'fs', 'mockery', 'pillar', 'pingr',
  'rprojroot', 'sessioninfo', 'spelling', 'testthat', 'webfakes',
  'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'assertthat'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'covr', 'testthat', 'disposables'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'callr', 'cli', 'crayon', 'curl', 'desc', 'filelock', 'glue',
  'jsonlite', 'lpSolve', 'pkgbuild', 'pkgcache', 'prettyunits',
  'processx', 'ps', 'rprojroot', 'R6', 'withr', 'zip'

Packages suggested but not available for checking:
  'asciicast', 'debugme', 'digest', 'fansi', 'fs', 'htmlwidgets',
  'mockery', 'pingr', 'rmarkdown', 'rstudioapi', 'spelling',
  'testthat', 'tibble', 'webfakes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'visNetwork', 'dplyr', 'magrittr', 'viridisLite', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bslib', 'callr', 'crayon', 'desc', 'digest', 'downlit', 'fs',
  'httr', 'jsonlite', 'magrittr', 'memoise', 'purrr', 'ragg', 'rlang',
  'rmarkdown', 'tibble', 'whisker', 'withr', 'xml2', 'yaml'

Packages suggested but not available for checking:
  'covr', 'diffviewer', 'evaluate', 'htmltools', 'htmlwidgets',
  'knitr', 'lifecycle', 'openssl', 'pkgload', 'rsconnect',
  'rstudioapi', 'rticles', 'sass', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'downloader', 'rappdirs'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggnetwork', 'ggplot2', 'data.table', 'curl', 'dplyr', 'htmltools',
  'igraph', 'intergraph', 'networkD3', 'network', 'RColorBrewer',
  'tibble', 'plyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'magrittr', 'sna', 'statnet.common',
  'BiocManager'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'whoami', 'tinytest', 'roxygen2'
Package unavailable to check Rd xrefs: 'whoami'
Packages required but not available: 'cli', 'magrittr', 'remotes'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'desc', 'rlang', 'rprojroot', 'rstudioapi', 'withr'

Packages suggested but not available for checking:
  'bitops', 'covr', 'pkgbuild', 'Rcpp', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'registry', 'digest', 'stringr', 'xtable', 'withr', 'assertthat'

Packages suggested but not available for checking:
  'devtools', 'roxygen2', 'RUnit', 'testthat', 'knitr', 'rmarkdown',
  'markdown', 'yaml', 'Biobase', 'rbibutils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ComplexHeatmap', 'GetoptLong', 'GlobalOptions', 'hash',
  'BiocManager', 'brew', 'BiocVersion'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'svglite', 'callr', 'rjson', 'Rook', 'igraph',
  'ggplot2', 'ggrepel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'covr', 'data.table', 'DT', 'futile.logger', 'glue',
  'igraph', 'knitr', 'magrittr', 'R6', 'rlang', 'rmarkdown',
  'visNetwork'

Packages suggested but not available for checking:
  'ggplot2', 'pkgdown', 'testthat', 'webshot', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'commonmark', 'httr', 'xml2', 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'curl', 'jsonlite', 'parsedate', 'prettyunits'

Packages suggested but not available for checking:
  'mockery', 'covr', 'memoise', 'pillar', 'pingr', 'rstudioapi',
  'shiny', 'shinyjs', 'shinyWidgets', 'testthat', 'whoami'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'devtools', 'usethis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'base64enc'

Package which this enhances but not available for checking: 'gmp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ranger'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'digest', 'purrr', 'rlang', 'tidyr', 'tibble'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'ggplot2', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
PKmod: no visible global function definition for 'deriv'
Undefined global functions or variables:
  deriv
Consider adding
  importFrom("stats", "deriv")
to your NAMESPACE file.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'binr', 'forestplot', 'rtf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'data.table', 'deSolve', 'dplyr', 'getPass', 'magrittr',
  'foreach', 'doParallel', 'reshape2'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sets'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'readr', 'dplyr', 'tigris', 'sf', 'withr', 'httr'

Packages suggested but not available for checking:
  'testthat', 'lifecycle', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'placer-Ex.R' failed
The error most likely occurred in:

> ### Name: plastic.ci
> ### Title: Confidence intervals of plastic prevalence probability
> ### Aliases: plastic.ci
> 
> ### ** Examples
> 
> plastic.ci(rbinom(1000,1,0.5), 30, 100)
Error in loadNamespace(x) : there is no package called 'dplyr'
Calls: plastic.ci ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available:
  'dplyr', 'tidyr', 'sp', 'rgdal', 'geosphere', 'data.table', 'rlang',
  'googleway', 'stringr', 'hms'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CVXR', 'igraph', 'matrixStats', 'partykit', 'psychotools',
  'psychotree', 'R6', 'RSpectra', 'qvcalc', 'sandwich'

Packages suggested but not available for checking:
  'BiocStyle', 'BayesMallows', 'BradleyTerry2', 'PLMIX', 'ROlogit',
  'StatRank', 'bookdown', 'covr', 'hyper2', 'kableExtra', 'knitr',
  'lbfgs', 'gnm', 'pmr', 'prefmod', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gdalUtils', 'htmltools', 'htmlwidgets', 'png', 'raster',
  'viridisLite'

Packages suggested but not available for checking: 'shiny', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dielectric', 'Rcpp', 'statmod', 'cubature', 'reshape2', 'plyr',
  'ggplot2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'Hmisc', 'gridExtra', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'stringr', 'gsl', 'uniformly', 'sdpt3r', 'fitConic'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'viridisLite', 'sets', 'ellipse',
  'freegroup', 'elliptic', 'rgl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'sf', 'data.table', 'glue', 'terra'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'sp', 'raster', 'RStoolbox', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 150 marked UTF-8 strings
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Skipping vignette re-building
Packages suggested but not available for checking:
  'nlstools', 'testthat', 'knitr', 'rmarkdown', 'DT'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'minpack.lm', 'plantecophys', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'GenomicRanges', 'VariantAnnotation', 'S4Vectors',
  'Rsamtools', 'rtracklayer', 'robustbase', 'SummarizedExperiment'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'dplyr', 'gdata', 'ggdendro', 'ggplot2', 'gridExtra',
  'gtable', 'htmlwidgets', 'magrittr', 'plotly', 'plyr',
  'RColorBrewer', 'reshape2', 'stringr'

Package suggested but not available for checking: 'lintr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RColorBrewer', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'viridis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'knitr', 'purrr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'BiocGenerics', 'Biostrings', 'dplyr', 'ggplot2', 'jsonlite',
  'knitr', 'plyr', 'reshape2', 'seqinr', 'stringr', 'Seurat',
  'SeuratObject', 'tibble', 'tidyr', 'useful'

Packages suggested but not available for checking:
  'AnnotationDbi', 'ape', 'circlize', 'cowplot', 'data.table',
  'doParallel', 'fda.usc', 'fgsea', 'ggalluvial', 'ggtree', 'ggrepel',
  'ggridges', 'ggseqlogo', 'gridExtra', 'harmony', 'igraph', 'IRanges',
  'limma', 'keras', 'msigdbr', 'org.Mm.eg.db', 'pheatmap', 'phytools',
  'purrr', 'readxl', 'reticulate', 'scales', 'SummarizedExperiment',
  'stringdist', 'tensorflow', 'tidytree', 'tidyselect', 'vegan',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'rms'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RColorBrewer', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mlogit', 'dfidx'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'mathjaxr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gWidgets2', 'gWidgets2tcltk', 'tkrplot', 'limma', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sfsmisc', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'tgp'

Packages suggested but not available for checking:
  'ellipse', 'splancs', 'akima'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'BiocManager', 'EBImage', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'EBImage'
Running examples in 'pliman-Ex.R' failed
The error most likely occurred in:

> ### Name: image_binary
> ### Title: Creates a binary image
> ### Aliases: image_binary
> 
> ### ** Examples
> 
> library(pliman)
> img <- image_pliman("soybean_touch.jpg")
Error in loadNamespace(x) : there is no package called 'EBImage'
Calls: image_pliman ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'optparse', 'data.table', 'R.utils', 'ggplot2', 'ggforce', 'ggrepel',
  'cowplot', 'UpSetR', 'dplyr', 'igraph', 'sys'

Packages suggested but not available for checking:
  'testthat', 'mockery', 'formatR', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'statmod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
bwfw.hmm: no visible global function definition for 'dnorm'
bwfw1.hmm: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  dnorm
Consider adding
  importFrom("stats", "dnorm")
to your NAMESPACE file.
Packages required but not available: 'lme4', 'numDeriv', 'optimx'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'irtoys'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'abind', 'foreach', 'ggplot2', 'ggmcmc', 'coda', 'reshape2',
  'rcdd', 'gridExtra', 'MCMCpack', 'gtools', 'label.switching',
  'radarchart', 'prefmod', 'rankdist', 'StatRank', 'pmr',
  'PlackettLuce'

Package suggested but not available for checking: 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sm', 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bdsmatrix', 'collapse', 'zoo', 'sandwich', 'lmtest', 'maxLik',
  'Rdpack', 'Formula'

Packages suggested but not available for checking:
  'AER', 'car', 'statmod', 'urca', 'pder', 'texreg', 'knitr',
  'rmarkdown', 'fixest', 'lfe'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'future.apply', 'R6', 'glassoFast', 'Rcpp', 'nloptr',
  'igraph', 'gridExtra', 'dplyr', 'tidyr', 'purrr', 'ggplot2',
  'corrplot', 'magrittr', 'rlang', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr', 'pkgdown', 'biomformat',
  'phyloseq', 'spelling', 'factoextra', 'Wrench'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'Rcpp'
'LazyData' is specified without a 'data' directory
Running examples in 'plogr-Ex.R' failed
The error most likely occurred in:

> ### Name: plogr-package
> ### Title: plogr: The 'plog' C++ Logging Library
> ### Aliases: plogr plogr-package
> 
> ### ** Examples
> 
> plogr_demo <- Rcpp::cppFunction(depends = "plogr", '
+ // C++ code begin
+ #include <plogr.h>
+ 
+ RObject plogr_demo() {
+   plog::init_r(plog::info);
+   LOG_INFO << "shown";
+   LOG_DEBUG << "not shown";
+   plog::init_r("DEBUG");
+   LOG_DEBUG << "shown now";
+   return R_NilValue;
+ }
+ 
+ #include <Rcpp.h> // not necessary to use plogr
+ // C++ code end
+ '
+ )
Error in loadNamespace(x) : there is no package called 'Rcpp'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package required but not available: 'mnormt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'kernlab'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'misc3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'plot3D'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggtern', 'Ternary', 'dplyr', 'ellipse', 'forcats', 'generics',
  'ggplot2', 'lifecycle', 'magrittr', 'purrr', 'Rdpack', 'stringr',
  'tibble', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'knitr', 'mlogit', 'ordinal', 'rmarkdown', 'VGAM', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'rlang', 'scales'

Packages suggested but not available for checking:
  'ape', 'aplot', 'dplyr', 'ggplotify', 'knitr', 'rmarkdown',
  'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'cmocean', 'dplyr', 'gganimate', 'ggnewscale', 'ggplot2', 'lazyeval',
  'lubridate', 'magrittr', 'maps', 'raster', 'rerddap', 'rgeos',
  'scales', 'sf', 'tidyr', 'viridis'

Packages suggested but not available for checking:
  'Cairo', 'knitr', 'mapdata', 'maptools', 'rgdal', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'mapproj', 'plotly', 'purrr', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'sp'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'wesanderson', 'amerika', 'ggplot2'

Packages suggested but not available for checking: 'mixtools', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'ggfittext', 'magick', 'gridExtra', 'scales',
  'farver'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'markdown', 'R.utils', 'covr', 'depmixS4',
  'data.table', 'ggplot2', 'neuroblastoma', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gstat', 'colorRamps', 'pixmap', 'XML', 'dismo', 'landmap', 'sp',
  'raster', 'rgdal', 'aqp', 'spacetime', 'colorspace', 'plyr',
  'stringr', 'scales', 'zoo', 'RColorBrewer', 'classInt', 'sf', 'stars'

Packages suggested but not available for checking:
  'RSAGA', 'plotrix', 'adehabitatLT', 'maptools', 'fossil', 'rjson',
  'animation', 'spatstat', 'spatstat.linnet', 'spatstat.geom', 'RCurl',
  'rgbif', 'Hmisc', 'uuid', 'intervals', 'reshape', 'gdalUtils',
  'snowfall', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'quantreg', 'scales', 'plyr', 'hexbin', 'RColorBrewer',
  'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'ggplot2movies', 'knitr', 'rmarkdown', 'gapminder'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'htmltools'

Package which this enhances but not available for checking: 'plotly'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ggplot2', 'scales', 'httr', 'jsonlite', 'magrittr', 'digest',
  'viridisLite', 'base64enc', 'htmltools', 'htmlwidgets', 'tidyr',
  'RColorBrewer', 'dplyr', 'vctrs', 'tibble', 'lazyeval', 'rlang',
  'crosstalk', 'purrr', 'data.table', 'promises'

Packages suggested but not available for checking:
  'maps', 'hexbin', 'ggthemes', 'GGally', 'testthat', 'knitr',
  'devtools', 'shiny', 'shinytest', 'curl', 'rmarkdown', 'Cairo',
  'broom', 'webshot', 'listviewer', 'dendextend', 'maptools', 'rgeos',
  'sf', 'png', 'IRdisplay', 'processx', 'plotlyGeoAssets', 'forcats',
  'palmerpenguins', 'rversions', 'reticulate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'psych', 'png'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'exams'
Running examples in 'plot.matrix-Ex.R' failed
The error most likely occurred in:

> ### Name: bfi.2
> ### Title: 25 Personality items representing 5 factors
> ### Aliases: bfi.2
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(bfi.2)
> library("psych")
Error in library("psych") : there is no package called 'psych'
Execution halted
Packages required but not available: 'coda', 'gplots'

Package suggested but not available for checking: 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'interactionTest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'wesanderson', 'amerika', 'ggplot2', 'dplyr', 'patchwork'

Packages suggested but not available for checking:
  'mixtools', 'EMCluster', 'flexmix', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'plotrix', 'TeachingDemos'

Packages suggested but not available for checking:
  'C50', 'earth', 'gbm', 'glmnet', 'glmnetUtils', 'mlr', 'neuralnet',
  'partykit', 'pre', 'rpart.plot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reshape2', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'plyr', 'plotrix', 'seqinr', 'ade4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
generateEnvelope: no visible global function definition for 'tail'
Undefined global functions or variables:
  tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.
Packages required but not available:
  'ggplot2', 'gridSVG', 'shiny', 'plyr', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'stringr', 'survivalROC', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'
Namespace in Imports field not imported from: 'graphics'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'plyr', 'shiny', 'MplusAutomation', 'Rcpp', 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'knitr'
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
llla.bi: no visible global function definition for 'as.formula'
llla.bi: no visible global function definition for 'glm'
llla.bi: no visible global function definition for 'binomial'
llla.bi: no visible binding for global variable 'logit'
llla.bi: no visible global function definition for 'vcov'
llla.bi: no visible global function definition for 'coef'
llla.mc: no visible global function definition for 'model.matrix'
llla.mc: no visible global function definition for 'as.formula'
llla.mc: no visible global function definition for 'coxph'
llla.mc: no visible global function definition for 'vcov'
llla.mc: no visible global function definition for 'coef'
llla.mle: no visible global function definition for 'as.formula'
llla.mle: no visible global function definition for 'glm'
llla.mle: no visible global function definition for 'poisson'
llla.mle: no visible global function definition for 'coef'
llla.mle: no visible global function definition for 'vcov'
mclgen: no visible global function definition for 'reshape'
simRasch.1D: no visible global function definition for 'rnorm'
simRasch.1D: no visible global function definition for 'runif'
vcov.sandwich.glm: no visible global function definition for
  'model.matrix'
vcov.sandwich.glm: no visible global function definition for 'weights'
vcov.sandwich.glm: no visible global function definition for
  'residuals'
vcov.sandwich.glm: no visible global function definition for 'vcov'
Undefined global functions or variables:
  as.formula binomial coef coxph glm logit model.matrix poisson reshape
  residuals rnorm runif vcov weights
Consider adding
  importFrom("stats", "as.formula", "binomial", "coef", "glm",
             "model.matrix", "poisson", "reshape", "residuals", "rnorm",
             "runif", "vcov", "weights")
to your NAMESPACE file.
Packages suggested but not available for checking: 'FactoMineR', 'plspm'
Packages required but not available:
  'reshape2', 'plyr', 'fields', 'RhpcBLASctl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'crayon', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'parsnip', 'dplyr', 'generics', 'magrittr', 'mixOmics', 'purrr',
  'rlang', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'modeldata', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'glmnet'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra', 'purrr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'Formula', 'plsRglm', 'betareg'

Packages suggested but not available for checking: 'pls', 'plsdof'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'Rmpi', 'testthat', 'RUnit'
Package unavailable to check Rd xrefs: 'sm'
Running 'test_import.R'
Running the tests in 'tests/test_import.R' failed.
Complete output:
  > ### test.R: Runs all RUnit tests that work when the functions are accessed by direct
  > ### import (i.e., pls::mvr(...))
  > 
  > 
  > ## Get warnings at once
  > options(warn = 1)
  > 
  > ## Make sure the global environment is clean:
  > rm(list = ls(all = TRUE))
  > 
  > ## Get the data
  > data(yarn, package = "pls")
  > data(oliveoil, package = "pls")
  > data(gasoline, package = "pls")
  > 
  > ## Get RUnit and utility functions
  > library(RUnit)
  Error in library(RUnit) : there is no package called 'RUnit'
  Execution halted
Packages required but not available:
  'plsRglm', 'lars', 'pls', 'kernlab', 'mixOmics', 'risksetROC',
  'survcomp', 'survAUC', 'rms'

Packages suggested but not available for checking: 'survivalROC', 'plsdof'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'bipartite', 'car'

Packages suggested but not available for checking:
  'plsdof', 'R.rsp', 'chemometrics', 'plsdepot'

Package which this enhances but not available for checking: 'pls'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2', 'shiny'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pls', 'genalg', 'mvtnorm', 'bdsmatrix', 'progress', 'MSQC',
  'praznik'

Package suggested but not available for checking: 'Rmpi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coreSim', 'ggplot2'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'analogsea', 'ssh', 'jsonlite', 'lifecycle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'stringi', 'jsonlite', 'webutils', 'httpuv', 'crayon',
  'promises', 'sodium', 'swagger', 'magrittr', 'mime', 'lifecycle',
  'ellipsis', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'base64enc', 'htmlwidgets', 'visNetwork',
  'later', 'readr', 'yaml', 'feather', 'future', 'rstudioapi',
  'spelling', 'mockery'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plumber', 'magrittr', 'curl', 'httpuv', 'jsonlite', 'later',
  'promises', 'rlang', 'htmltools', 'debugme', 'stringi', 'markdown',
  'urltools', 'glue', 'httr', 'knitr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'objectSignals'

Packages suggested but not available for checking: 'plyr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'V8'

Packages suggested but not available for checking:
  'tinytest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'backports', 'lifecycle'

Packages suggested but not available for checking:
  'covr', 'crayon', 'fracture', 'nombre', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RCurl', 'RJSONIO', 'lubridate', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'abind', 'covr', 'doParallel', 'foreach', 'iterators', 'itertools',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mixture', 'mnormt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pbdMPI'

Package which this enhances but not available for checking: 'MixSim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'multcompView', 'gmp', 'Rmpfr', 'SuppDists', 'kSamples',
  'BWStest'

Packages suggested but not available for checking:
  'xtable', 'knitr', 'rmarkdown', 'car', 'e1071', 'multcomp', 'pwr',
  'NSM3'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'multcompView'
Package unavailable to check Rd xrefs: 'multcompView'
Packages required but not available:
  'dplyr', 'geiger', 'ggplot2', 'ouch', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'gridExtra', 'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RColorBrewer', 'data.table', 'igraph', 'enviGCMS'

Packages suggested but not available for checking:
  'knitr', 'shiny', 'rmarkdown', 'MSnbase'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'dplyr', 'httr', 'lubridate', 'magrittr', 'RCurl', 'tidyr',
  'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'Quandl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'FNN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'splitstackshape', 'rmutil'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'stringr'

Packages suggested but not available for checking:
  'ada', 'amap', 'arules', 'caret', 'clue', 'data.table', 'forecast',
  'gbm', 'glmnet', 'neighbr', 'randomForest', 'rattle', 'kernlab',
  'e1071', 'testthat', 'xgboost', 'knitr', 'rmarkdown', 'covr',
  'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'pmml'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'pmml'
Running examples in 'pmmlTransformations-Ex.R' failed
The error most likely occurred in:

> ### Name: DiscretizeXform
> ### Title: Discretizes a continuous variable to a discrete one as indicated
> ###   by interval mappings. This is in accordance to the PMML element:
> ###   *Discretize*
> ### Aliases: DiscretizeXform
> ### Keywords: manip
> 
> ### ** Examples
> 
> # Load the pmmlTransformations package
>     library(pmmlTransformations)
>     library(pmml)
Error in library(pmml) : there is no package called 'pmml'
Execution halted
Packages required but not available:
  'data.table', 'DBI', 'foreach', 'glue', 'iterators', 'jsonlite',
  'R.utils', 'RCurl', 'withr', 'xml2'

Packages suggested but not available for checking:
  'bigrquery', 'doParallel', 'RMariaDB', 'RPostgres', 'RSQLite',
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
dbm: no visible global function definition for 'optim'
dbm: no visible global function definition for 'new'
destat: no visible global function definition for 'weighted.mean'
local.knn: no visible global function definition for 'sd'
local.knn: no visible global function definition for 'optim'
mdpref: no visible global function definition for 'sd'
mdpref: no visible global function definition for 'text'
mdpref: no visible global function definition for 'lines'
phicom: no visible global function definition for 'optim'
phicom: no visible global function definition for 'new'
pl: no visible global function definition for 'optim'
pl: no visible global function definition for 'new'
rol: no visible global function definition for 'nlm'
rol: no visible global function definition for 'new'
wdbm: no visible global function definition for 'optim'
wdbm: no visible global function definition for 'new'
Undefined global functions or variables:
  lines new nlm optim sd text weighted.mean
Consider adding
  importFrom("graphics", "lines", "text")
  importFrom("methods", "new")
  importFrom("stats", "nlm", "optim", "sd", "weighted.mean")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Package required but not available: 'fftw'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'coda', 'condMVNorm', 'MCMCpack', 'mvtnorm'

Packages suggested but not available for checking:
  'covr', 'rtdists', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'NMOF', 'datetimeutils', 'fastmatch', 'orgutils', 'textutils', 'zoo'

Packages suggested but not available for checking:
  'crayon', 'rbenchmark', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'table1', 'data.table', 'htmltools', 'knitr'

Packages suggested but not available for checking:
  'rmarkdown', 'yaml', 'linpk'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'magrittr', 'data.tree', 'DiagrammeR', 'ggplot2',
  'ggrepel', 'gridExtra', 'chron', 'xml2', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'magrittr', 'projmgr', 'RCurl', 'readr', 'readxl',
  'survey', 'tibble', 'timeDate'

Packages suggested but not available for checking:
  'convey', 'lavaan.survey', 'srvyr', 'surf', 'tidyverse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
pnmtrem1: no visible global function definition for 'pnorm'
pnmtrem1: no visible global function definition for 'dnorm'
pnmtrem1: no visible global function definition for 'ginv'
pnmtrem1 : fun: no visible global function definition for 'pnorm'
pnmtrem1 : derf: no visible global function definition for 'dnorm'
pnmtrem1 : derf: no visible global function definition for 'pnorm'
pnmtrem1 : fun: no visible global function definition for 'dnorm'
Undefined global functions or variables:
  dnorm ginv pnorm
Consider adding
  importFrom("stats", "dnorm", "pnorm")
to your NAMESPACE file.
Packages required but not available:
  'dplyr', 'httr', 'magrittr', 'projmgr', 'RCurl', 'readr', 'readxl',
  'survey', 'tibble', 'timeDate'

Packages suggested but not available for checking:
  'convey', 'lavaan.survey', 'srvyr', 'surf', 'tidyverse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'ggplot2'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'tibble', 'pracma', 'nloptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'purrr', 'tibble', 'dplyr', 'glue', 'jsonlite', 'magrittr',
  'usethis'

Packages suggested but not available for checking:
  'testthat', 'mockery', 'covr', 'httptest', 'knitr', 'rmarkdown',
  'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'pracma', 'EbayesThresh'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dfcrm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ggplot2', 'dplyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fuzzyjoin', 'magrittr', 'progress', 'purrr', 'readr',
  'rlang', 'stringi', 'stringr', 'tibble', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'abc', 'doParallel', 'foreach', 'gdistance', 'geosphere', 'lhs',
  'metRology', 'R6', 'raster', 'trend'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'PUlasso', 'glmnet', 'pROC', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'magrittr', 'projmgr', 'RCurl', 'readr', 'readxl',
  'survey', 'tibble', 'timeDate'

Packages suggested but not available for checking:
  'convey', 'lavaan.survey', 'srvyr', 'surf', 'tidyverse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'logistf', 'plyr'

Package suggested but not available for checking: 'COUNT'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'SmarterPoland'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'blastula', 'cli', 'DBI', 'digest', 'dplyr', 'dbplyr',
  'fs', 'glue', 'gt', 'htmltools', 'knitr', 'rlang', 'magrittr',
  'scales', 'testthat', 'tibble', 'tidyr', 'tidyselect', 'yaml'

Packages suggested but not available for checking:
  'arrow', 'covr', 'crayon', 'data.table', 'duckdb', 'ggforce',
  'ggplot2', 'jsonlite', 'log4r', 'lubridate', 'RSQLite', 'RMySQL',
  'RPostgres', 'readr', 'rmarkdown', 'sparklyr', 'dittodb', 'odbc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gmm', 'car', 'ggplot2', 'lubridate', 'sandwich'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rARPACK', 'CompQuadForm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplR', 'plyr', 'TripleR', 'DescTools'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertive.base', 'assertive.properties', 'assertive.types',
  'assertive.files', 'assertive.sets', 'assertive.strings', 'devtools',
  'digest', 'dplyr', 'magrittr', 'purrr', 'R6', 'stringi', 'tibble',
  'whoami'

Packages suggested but not available for checking:
  'testthat', 'rebus.datetimes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BB', 'corpcor', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'GenOrd', 'BB'

Package suggested but not available for checking: 'moments'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'corpcor', 'mvtnorm', 'psych', 'GenOrd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'GenOrd', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'glmmML'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BB', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'robustbase', 'robcbi', 'checkmate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'parsnip', 'dplyr', 'generics', 'glue', 'purrr', 'rlang', 'tibble',
  'tidyr'

Packages suggested but not available for checking:
  'covr', 'pscl', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'argonDash', 'argonR', 'colourpicker', 'ggplot2', 'hexSticker',
  'png', 'shiny', 'shinyWidgets'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'vegan', 'ineq', 'reshape2'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'rmarkdown', 'knitr', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'grf', 'BH'

Packages suggested but not available for checking: 'testthat', 'DiagrammeR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'rlang', 'tidyverse', 'car', 'purrr',
  'formula.tools', 'gplots', 'rstatix', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'descr', 'Hmisc', 'weights', 'plyr', 'gplots', 'xtable', 'survey',
  'car', 'plotrix', 'abind'

Packages suggested but not available for checking:
  'hexbin', 'rgl', 'scatterplot3d', 'R2HTML', 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'automagic', 'digest', 'dplyr', 'DT', 'htmltools', 'httr', 'jose',
  'jsonlite', 'lubridate', 'purrr', 'rlang', 'rmarkdown', 'shiny',
  'shinycssloaders', 'shinydashboard', 'shinyFeedback', 'shinyjs',
  'shinyWidgets', 'stringr', 'tibble', 'tidyr', 'uuid', 'yaml'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'config', 'xfun'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tm', 'quanteda', 'ggplot2', 'spacyr', 'textir', 'glmnet',
  'data.table', 'stringr', 'stringi'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'here', 'httr', 'magrittr', 'memoise', 'ratelimitr', 'robotstxt',
  'rvest', 'usethis'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'purrr', 'dplyr'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'tidyr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'brms', 'repmis'

Packages suggested but not available for checking:
  'rstan', 'pollimetrydata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'stringr', 'tidyr', 'labelled', 'forcats', 'rlang'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'slam', 'tm', 'DT', 'xml2', 'stringi', 'jsonlite',
  'pbapply', 'RcppCWB', 'magrittr', 'knitr'

Packages suggested but not available for checking:
  'markdown', 'rmarkdown', 'htmltools', 'highlight', 'sendmailR',
  'shiny', 'shinythemes', 'miniUI', 'rhandsontable', 'testthat',
  'tidytext', 'covr', 'igraph', 'NLP', 'httr', 'protolite', 'curl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
qPolyaAeppliSingle: no visible global function definition for 'qgamma'
rPolyaAeppli: no visible global function definition for 'rpois'
rPolyaAeppli: no visible global function definition for 'rgeom'
Undefined global functions or variables:
  qgamma rgeom rpois
Consider adding
  importFrom("stats", "qgamma", "rgeom", "rpois")
to your NAMESPACE file.
Package required but not available: 'rcdd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'colorspace', 'scatterplot3d'

Packages suggested but not available for checking:
  'RColorBrewer', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'mvtnorm', 'admisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Packages suggested but not available for checking:
  'spatstat.geom', 'mvtnorm', 'statmod', 'rgeos', 'gpclib', 'sf',
  'cubature', 'knitr', 'rmarkdown', 'microbenchmark'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'coda'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'testthat', 'spelling', 'sf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'foreach', 'igraph', 'knitr', 'MDSMap'

Packages suggested but not available for checking:
  'ggplot2', 'hexbin', 'Hmisc', 'RColorBrewer', 'reshape2',
  'rmarkdown', 'polyRAD', 'updog', 'mappoly'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'polynom'

Packages suggested but not available for checking: 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'doParallel', 'foreach', 'itertools', 'lubridate',
  'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'reshape2', 'ggplot2', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'lme4'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'doParallel', 'foreach', 'Hmisc', 'knitr', 'RColorBrewer',
  'Rcpp', 'reshape2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'igraph', 'mappoly', 'polymapR', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fastmatch', 'pcaMethods', 'Rcpp', 'stringi'

Packages suggested but not available for checking:
  'rrBLUP', 'Rsamtools', 'GenomeInfoDb', 'Biostrings', 'GenomicRanges',
  'VariantAnnotation', 'SummarizedExperiment', 'S4Vectors', 'IRanges',
  'BiocGenerics', 'knitr', 'rmarkdown', 'GenomicFeatures', 'ggplot2',
  'adegenet'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dummies'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'ade4', 'adegenet', 'ape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'polySegratio', 'gtools', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'miscTools', 'foreach', 'Formula', 'glmnet', 'iterators', 'ncvreg',
  'Rcpp', 'stringr'

Packages suggested but not available for checking: 'carData', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixStats', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'assertthat', 'rlang', 'magrittr',
  'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pomdpSolve', 'igraph'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'Ternary', 'visNetwork', 'sarsop'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'pomdp'
Packages required but not available:
  'tibble', 'caret', 'gbm', 'randomForest', 'pROC', 'ipred'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'ggplot2', 'reshape2', 'qgraph'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'mvtnorm', 'deSolve', 'coda', 'reshape2', 'magrittr',
  'plyr'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'tidyr', 'dplyr', 'subplex', 'nloptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'matrixcalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glue'

Packages suggested but not available for checking:
  'testthat', 'covr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'doParallel', 'DiagrammeR', 'ape', 'zoo',
  'Ryacas', 'RcppProgress', 'progress', 'nnls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cubature', 'data.table', 'dplyr', 'dvmisc', 'ggplot2', 'ggrepel',
  'mvtnorm', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'R6', 'later'

Packages suggested but not available for checking:
  'testthat', 'tibble', 'dplyr', 'dbplyr', 'RSQLite', 'RMySQL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mathjaxr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'rstan', 'rstantools', 'brms', 'lme4', 'stringr',
  'progress', 'BH', 'RcppEigen', 'StanHeaders'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'EmpiricalBrownsMethod', 'Hmisc', 'ranger'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'pkgdown', 'rmarkdown', 'roxygen2', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'R2jags', 'usethis'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'quadprog'
Packages required but not available: 'expm', 'MCMCpack'

Packages suggested but not available for checking:
  'knitr', 'magick', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Iso', 'knitr', 'magick'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'mvtnorm', 'dplyr', 'magrittr', 'purrr', 'stringr',
  'tibble', 'gtools'

Packages suggested but not available for checking:
  'testthat', 'Hmisc', 'GA', 'deSolve', 'Rcpp', 'shiny',
  'rhandsontable', 'knitr', 'rmarkdown', 'gridExtra', 'covr',
  'devtools', 'mrgsolve'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Epi', 'data.table'

Packages suggested but not available for checking:
  'reshape2', 'testthat', 'knitr', 'rmarkdown', 'relsurv', 'ggplot2',
  'mstate', 'date', 'roxygen2', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ff'

Packages suggested but not available for checking:
  'bigmemory', 'BASIX', 'WhopGenome', 'BlockFeST'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'adegenet', 'RgoogleMaps', 'gap', 'calibrate', 'xtable',
  'plyr', 'dismo', 'reshape', 'ggplot2', 'R.utils', 'ade4', 'pegas',
  'genetics', 'rgdal', 'gdistance', 'vegan', 'sp', 'mmod', 'GGally',
  'data.table', 'raster'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/PopGenReportIntroduction.Rnw'
   'inst/doc/Tutorial_landgenreport.rnw'
   'inst/doc/Tutorial_optimizer.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RColorBrewer', 'ape', 'RcppEigen'

Packages suggested but not available for checking:
  'BEDMatrix', 'testthat', 'knitr', 'rmarkdown', 'lfa', 'bnpsd'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'plotrix'
asymmetricIntervals: no visible global function definition for 'stack'
bonferroniIntervals: no visible global function definition for 'stack'
bonferroniIntervals: no visible global function definition for 'lm'
bonferroniIntervals: no visible global function definition for
  'predict'
bootstrapIntervals: no visible global function definition for 'stack'
component1a: no visible global function definition for 'pnorm'
component1b: no visible global function definition for 'pnorm'
component2: no visible global function definition for 'dgamma'
eqnForMin: no visible global function definition for 'pnorm'
eqnForMin: no visible global function definition for 'integrate'
integrand : <anonymous>: no visible global function definition for
  'pnorm'
integrand: no visible global function definition for 'dnorm'
integrate2: no visible global function definition for 'integrate'
integrate2a: no visible global function definition for 'integrate'
integrate2b: no visible global function definition for 'integrate'
integrate4a: no visible global function definition for 'integrate'
integrate4b: no visible global function definition for 'integrate'
optimalCScalar2: no visible global function definition for 'uniroot'
optimalLambda: no visible global function definition for 'optimise'
optimalLambdaC: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  dgamma dnorm integrate lm optimise pnorm predict stack uniroot
Consider adding
  importFrom("stats", "dgamma", "dnorm", "integrate", "lm", "optimise",
             "pnorm", "predict", "uniroot")
  importFrom("utils", "stack")
to your NAMESPACE file.
Errors in running code in vignettes:
when running code in 'popKorn.Rnw'

> p <- 10

> n <- 10

> set.seed(18)

> Xmat <- matrix(rnorm(p * n), nrow = n, ncol = p)

> colnames(Xmat) <- paste("p.", 1:p, sep = "")

> Xmat.melt <- reshape(as.data.frame(Xmat), direction = "long", 
+     varying = 1:p)

> colnames(Xmat.melt) <- c("p", "X", "n")

> boxplot(X ~ p, data = Xmat.melt, col = "sienna2", 
+     main = "Boxplot of sample X", xlab = "Population p", ylab = "X")

> points(1:10, colMeans(Xmat), pch = 20, col = "white", 
+     cex = 2.5)

> Xmat.melt$p <- as.factor(Xmat.melt$p)

> library(popKorn)
Loading required package: boot

> bonferroniIntervals(Xmat, k = 1)
         fit        lwr     upr
p.5 0.367693 -0.5175339 1.25292

> asymmetricIntervals(Xmat, k = 1, eps = 0.05)
         fit        lwr       upr
p.5 0.367693 -0.4474376 0.8975278

> asym.out <- asymmetricIntervals(Xmat, k = 3)

> bonf.out <- bonferroniIntervals(Xmat, k = 3)

> library(plotrix)

  When sourcing 'popKorn.R':
Error: there is no package called 'plotrix'
Execution halted

  'popKorn.Rnw'... failed
Error(s) in re-building vignettes:
--- re-building 'popKorn.Rnw' using Sweave
Loading required package: boot

Error: processing vignette 'popKorn.Rnw' failed with diagnostics:
 chunk 5 (label = plot_intervals) 
Error in library(plotrix) : there is no package called 'plotrix'

--- failed re-building 'popKorn.Rnw'

SUMMARY: processing the following file failed:
  'popKorn.Rnw'

Error: Vignette re-building failed.
Execution halted
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'adegenet', 'vegan', 'ggplot2', 'ape', 'igraph', 'ade4', 'pegas',
  'polysat', 'dplyr', 'rlang', 'shiny', 'magrittr', 'progressr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'poweRlaw', 'cowplot', 'RClone'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/algo.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tibble', 'dplyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

Packages suggested but not available for checking:
  'ggplot2', 'reshape', 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'raster', 'foreach', 'gdalUtils', 'randomForest',
  'quantregForest', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fields', 'ggplot2', 'hash'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'devtools', 'ggplot2', 'plyr', 'roxygen2', 'shiny', 'shinycssloaders'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'rlang', 'Metrics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BGLR', 'qtl', 'rrBLUP'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forecast', 'timetk', 'lubridate', 'xts', 'httr', 'tibble',
  'magrittr', 'zoo', 'curl', 'purrr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clipr', 'clisymbols', 'crayon', 'dplyr', 'forecast', 'httr',
  'lubridate', 'lunar', 'magrittr', 'rlang', 'tidyr', 'tidyselect',
  'zoo'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'ggplot2', 'httptest', 'knitr', 'pkgdown',
  'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'forecast'

Packages suggested but not available for checking:
  'akima', 'car', 'fGarch', 'FitAR', 'fracdiff', 'gstat', 'tseries',
  'vars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'xts', 'foreach', 'PerformanceAnalytics'

Packages suggested but not available for checking:
  'quantmod', 'DEoptim', 'iterators', 'fGarch', 'Rglpk', 'quadprog',
  'ROI', 'ROI.plugin.glpk', 'ROI.plugin.quadprog',
  'ROI.plugin.symphony', 'pso', 'GenSA', 'corpcor', 'testthat',
  'nloptr', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'evaluate', 'ggplot2', 'pbapply', 'PerformanceAnalytics',
  'quadprog', 'quantmod', 'R.utils', 'rlang', 'xts', 'zoo'

Packages suggested but not available for checking:
  'CVXR', 'DT', 'ggfortify', 'gridExtra', 'knitr', 'prettydoc',
  'readtext', 'rmarkdown', 'R.rsp', 'stringi', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'PortfolioEffectHFT', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'rJava', 'zoo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'magrittr', 'modopt.matlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rsymphony'

Packages suggested but not available for checking:
  'mvtnorm', 'Rglpk', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'MCMCpack', 'tseries', 'copula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'zoo'

Packages suggested but not available for checking:
  'PortfolioAnalytics', 'PerformanceAnalytics', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'igraph', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BMS', 'mvtnorm', 'NORMT3'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rmarkdown', 'rstudioapi'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Packages suggested but not available for checking:
  'knitr', 'dplyr', 'rmarkdown', 'testthat', 'covr', 'purrr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pagedown', 'rmarkdown', 'yaml'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'e1071', 'ggplot2', 'gridExtra', 'Rcpp', 'rstan',
  'StanHeaders', 'tibble'

Packages suggested but not available for checking:
  'covr', 'knitr', 'lintr', 'rmarkdown', 'roxygen2', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'checkmate', 'rlang', 'tibble', 'vctrs', 'tensorA',
  'pillar', 'distributional', 'matrixStats'

Packages suggested but not available for checking:
  'testthat', 'caret', 'gbm', 'randomForest', 'e1071', 'dplyr',
  'tidyr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'refund', 'denseFLMM', 'dplyr', 'xlsx', 'tidyr', 'zoo', 'ineq',
  'cosinor', 'cosinor2', 'abind', 'accelerometry', 'ActCR', 'ActFrag',
  'minpack.lm', 'kableExtra', 'GGIR'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'DBI', 'jsonlite', 'rgdal', 'rgeos', 'RPostgreSQL', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'multcomp'

Packages suggested but not available for checking:
  'xtable', 'lme4', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'tibble', 'crul', 'purrr', 'jsonlite', 'rvest', 'xml2'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'CompQuadForm', 'ape'

Packages suggested but not available for checking:
  'multtest', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'coda', 'mcmcse', 'abind'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'isoband', 'doParallel', 'foreach'

Packages suggested but not available for checking:
  'covr', 'lwgeom', 'cartography', 'knitr', 'tinytest', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'crayon', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'pooh'
Running 'cll.R'
  Comparing 'cll.Rout' to 'cll.Rout.save' ... OK
  Running 'debug-cond.R'
Running the tests in 'tests/debug-cond.R' failed.
Complete output:
  > 
  >  library(potts)
  >  library(pooh)
  Error in library(pooh) : there is no package called 'pooh'
  Execution halted
Package required but not available: 'miscF'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'haplo.stats', 'gap', 'ggplot2', 'reshape2', 'BIGDAWG'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ape', 'data.table', 'coda', 'foreach', 'ggplot2', 'lamW',
  'adaptMCMC'

Packages suggested but not available for checking:
  'testthat', 'usethis', 'Rmpfr', 'mvtnorm', 'lmtest', 'knitr',
  'rmarkdown', 'doParallel'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'stringr', 'httr', 'jsonlite', 'readr', 'tibble', 'dplyr',
  'js', 'tidyr', 'naniar', 'memoise'

Packages suggested but not available for checking:
  'testthat', 'assertthat', 'knitr', 'rmarkdown', 'forcats', 'scales',
  'ggthemes', 'ggplot2', 'utf8', 'httptest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'broom', 'formula.tools'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rmutil', 'gamlss.dist', 'normalp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'reshape', 'plotly', 'ggplot2', 'ggpubr', 'shiny', 'DT',
  'nnls', 'shinyWidgets', 'baseline', 'tidyr', 'FactoMineR',
  'factoextra', 'rxylib'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'PowerTOST', 'mvtnorm', 'cubature'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'gdata', 'reshape2', 'stringr', 'plyr', 'ggplot2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'GLMMadaptive'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'pwr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'data.table', 'expm', 'ggplot2', 'glmnet', 'lme4',
  'lmerTest', 'plyr', 'Rcpp', 'signal'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'generics', 'glue', 'rlang', 'tidyselect', 'vctrs', 'purrr',
  'magrittr', 'lifecycle', 'tibble', 'tidyr', 'cli'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'covr'
'LazyData' is specified without a 'data' directory
Package required but not available: 'pracma'

Packages suggested but not available for checking:
  'covr', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/a_introduction.Rnw'
   'inst/doc/b_powerlaw_examples.Rnw'
   'inst/doc/c_comparing_distributions.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'progress', 'splines2', 'quadprog', 'osqp', 'bootnet',
  'qgraph', 'ggplot2', 'rlang', 'patchwork'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'library' or 'require' call to 'tcltk' which was already attached by Depends.
  Please remove these calls from your code.
fnfam: no visible global function definition for 'qnorm'
fx: no visible global function definition for 'qnorm'
normplot : <local> : replot: no visible global function definition for
  'qnorm'
normplot : <local> : replot: no visible global function definition for
  'pnorm'
normplot : <local> : replot: no visible global function definition for
  'dnorm'
normplot : <local> : replot: no visible global function definition for
  'points'
normplot : <local> : replot: no visible global function definition for
  'lines'
normplot : <local> : regen: no visible global function definition for
  'rnorm'
normplot : <local> : regen: no visible global function definition for
  'rexp'
nsibs: no visible global function definition for 'qnorm'
ntdt: no visible global function definition for 'uniroot'
plotNtdt: no visible global function definition for 'lines'
plotNtdt: no visible global function definition for 'legend'
ptdt: no visible global function definition for 'optimize'
ptdt: no visible global function definition for 'uniroot'
ptdt: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  dnorm legend lines optimize pnorm points qnorm rexp rnorm uniroot
Consider adding
  importFrom("graphics", "legend", "lines", "points")
  importFrom("stats", "dnorm", "optimize", "pnorm", "qnorm", "rexp",
             "rnorm", "uniroot")
to your NAMESPACE file.
Packages required but not available: 'complexplus', 'phonTools', 'expm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'cubature', 'TeachingDemos'

Packages suggested but not available for checking:
  'crossdes', 'knitr', 'rmarkdown', 'tufte', 'emmeans'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages suggested but not available for checking: 'VGAM', 'nortest'
Packages unavailable to check Rd xrefs: 'nortest', 'VGAM'
Package required but not available: 'rARPACK'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'inaparc'

Packages suggested but not available for checking:
  'factoextra', 'fclust', 'knitr', 'rmarkdown', 'vegclust'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'tfse', 'jsonlite', 'tibble'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'htmltools', 'htmlwidgets', 'leaflet',
  'magrittr', 'PakPC2017', 'rgdal', 'scales', 'shiny', 'tidyr', 'tmap'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'Rcpp', 'magrittr', 'plyr', 'dplyr', 'tidyr', 'doParallel',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'gridExtra', 'GGally', 'ggplot2', 'RColorBrewer',
  'roxygen2', 'PPtreeViz', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'evgam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'mclust', 'GA', 'ggplot2', 'ggthemes', 'cli', 'crayon',
  'RcppArmadillo'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'stringr', 'readxl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'genlasso', 'ggplot2', 'cvCovEst', 'glmnet'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'censable', 'dplyr', 'magrittr', 'readr', 'rlang', 'stringr',
  'tibble', 'tidyr', 'zip'

Package suggested but not available for checking: 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'nleqslv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'plotly'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'eRm', 'data.table', 'prettydoc',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'settings'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rfast', 'clue', 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'furrr', 'future', 'ggplot2', 'plotly', 'purrr', 'tibble',
  'patchwork', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'gt', 'knitr', 'rmarkdown', 'spelling', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'brglm2', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'parsnip', 'withr', 'gridExtra'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gridExtra', 'ggplot2', 'partykit', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reshape2', 'RColorBrewer', 'plyr', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'doParallel', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mclust'

Packages suggested but not available for checking:
  'spdep', 'spatialreg', 'bootstrap', 'maptools', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'NlcOptim', 'quadprog'
Running examples in 'pracma-Ex.R' failed
The error most likely occurred in:

> ### Name: fmincon
> ### Title: Minimize Nonlinear Constrained Multivariable Function.
> ### Aliases: fmincon
> ### Keywords: optimize
> 
> ### ** Examples
> 
> # Classical Rosenbrock function
> n <- 10; x0 <- rep(1/n, n)
> fn <- function(x) {n <- length(x)
+     x1 <- x[2:n]; x2 <- x[1:(n - 1)]
+     sum(100 * (x1 - x2^2)^2 + (1 - x2)^2)
+ }
> # Equality and inequality constraints
> heq1 <- function(x) sum(x)-1.0
> hin1 <- function(x) -1 * x
> hin2 <- function(x) x - 0.5
> ub <- rep(0.5, n)
> 
> # Apply constraint minimization
> res <- fmincon(x0, fn, hin = hin1, heq = heq1)
Error in fmincon(x0, fn, hin = hin1, heq = heq1) : 
  Package 'NlcOptim' missing -- install from CRAN.
Execution halted
Packages required but not available:
  'dplyr', 'ggplot2', 'numDeriv', 'Temporal', 'tidyr'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'doBy', 'lpSolve', 'markdown', 'plyr', 'pps', 'Rcpp', 'reshape',
  'roxygen2', 'sampling', 'samplingbook', 'survey', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'PracTools-Ex.R' failed
The error most likely occurred in:

> ### Name: deff
> ### Title: Design effects of various types
> ### Aliases: deff
> ### Keywords: methods survey
> 
> ### ** Examples
> 
> require(reshape)      # has function that allows renaming variables
Loading required package: reshape
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'reshape'
> require(sampling)
Loading required package: sampling
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'sampling'
> 
> set.seed(-500398777)
>     # generate population using HMT function
> pop.dat <- as.data.frame(HMT())
> mos <- pop.dat$x
> pop.dat$prbs.1d <- mos / sum(mos)
>     # select pps sample
> n <- 80
> pk <- n * pop.dat$prbs.1d
> sam <- UPrandomsystematic(pk)
Error in UPrandomsystematic(pk) : 
  could not find function "UPrandomsystematic"
Execution halted
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sandwich', 'pcse', 'lmtest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ROCR', 'PRROC', 'precrec', 'R6', 'assertthat', 'gridExtra',
  'ggplot2', 'memoise'

Packages suggested but not available for checking:
  'microbenchmark', 'PerfMeas', 'rJava', 'testthat', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'tibble', 'irr', 'lpSolve', 'purrr',
  'forcats', 'magrittr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pbapply', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'devtools', 'ggplot2', 'knitr', 'rmarkdown', 'roxygen2',
  'testthat', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'data.table', 'dplyr', 'gdalUtils', 'getPass', 'ggplot2',
  'hdf5r', 'lubridate', 'maps', 'ncdf4', 'raster', 'rgdal', 'R.utils',
  'sp', 'stringr', 'viridis', 'zoo'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'purrr', 'rlang', 'shiny',
  'shinycssloaders', 'shinythemes', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'ggrepel', 'knitr', 'rmarkdown', 'spelling', 'testthat',
  'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'cli', 'fs', 'here', 'magrittr', 'purrr', 'R.cache', 'rlang',
  'rprojroot', 'rstudioapi', 'withr', 'yaml'

Packages suggested but not available for checking:
  'desc', 'digest', 'docopt', 'git2r', 'glue', 'knitr', 'lintr',
  'mockery', 'pkgload', 'reticulate', 'rmarkdown', 'roxygen2',
  'spelling', 'styler', 'testthat', 'tibble', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'assertthat', 'gridExtra', 'data.table', 'withr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Biostrings', 'protr', 'Peptides', 'kernlab', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'caret'
Packages required but not available:
  'BGLR', 'pls', 'glmnet', 'randomForest', 'xgboost', 'foreach',
  'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'rgl', 'dplyr', 'ggiraphExtra', 'modelr', 'prediction',
  'purrr', 'rlang', 'stringr', 'magrittr', 'moonBook', 'TH.data',
  'reshape2', 'plyr', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'ROCR', 'PBSmodelling', 'lazyeval'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'MBESS', 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Package suggested but not available for checking: 'testthat'

Packages which this enhances but not available for checking:
  'AER', 'aod', 'betareg', 'biglm', 'brglm', 'caret', 'crch', 'e1071',
  'earth', 'ff', 'ffbase', 'gam', 'gee', 'glmnet', 'glmx', 'kernlab',
  'lme4', 'mclogit', 'mda', 'mlogit', 'MNP', 'ordinal', 'plm', 'pscl',
  'quantreg', 'sampleSelection', 'speedglm', 'survey', 'truncreg',
  'VGAM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fitdistrplus', 'Renext'

Packages suggested but not available for checking: 'actuar', 'tolerance'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
gausspred: no visible global function definition for 'qt'
mvapred: no visible global function definition for 'qt'
Undefined global functions or variables:
  qt
Consider adding
  importFrom("stats", "qt")
to your NAMESPACE file.
Packages required but not available:
  'lme4', 'lmeInfo', 'ggplot2', 'pbkrtest', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DT', 'golem', 'shiny', 'rlang', 'config', 'xtable', 'glmnet',
  'colourpicker', 'traineR', 'shinyjs', 'xgboost', 'rpart.plot',
  'echarts4r', 'shinyAce', 'htmltools', 'shinydashboard',
  'shinycustomloader', 'shinydashboardPlus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'maxLik', 'e1071', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'ggplot2', 'caret', 'e1071', 'mclust', 'party',
  'randomForest', 'statmod'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Namespace in Imports field not imported from: 'rpart'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'pROC', 'RConics', 'ggplot2', 'dplyr', 'magrittr'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'forecast', 'Metrics', 'TSPred', 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pkgdown', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mcmc', 'entropy'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gnm', 'colorspace'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'plotrix', 'gamlss.dist', 'data.table', 'spdep',
  'rgdal', 'RcppEigen', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

Packages suggested but not available for checking: 'dplyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'reshape2', 'psych'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plotrix', 'shape'

Packages suggested but not available for checking:
  'bookdown', 'knitr', 'rmarkdown', 'ggplot2', 'gridBase'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'oompaBase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'rmarkdown', 'psycho', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'earth', 'Formula', 'glmnet', 'partykit', 'stringr', 'MatrixModels'

Packages suggested but not available for checking:
  'akima', 'doParallel', 'foreach', 'glmertree', 'mlbench', 'testthat',
  'mboost', 'ggplot2', 'caret', 'pROC', 'knitr', 'rmarkdown', 'mice'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmarkdown'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'jsonlite', 'rmdpartials', 'yaml'

Packages suggested but not available for checking:
  'googlesheets4', 'haven', 'justifier', 'knitr', 'openxlsx',
  'markdown', 'readxl', 'rvest', 'testthat', 'writexl', 'XLConnect',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'marelac', 'measurements'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'flextable', 'magrittr', 'dplyr', 'rlang', 'stringr', 'purrr',
  'officer', 'randomcoloR', 'tidyr', 'openxlsx', 'lubridate',
  'janitor', 'tibble', 'stringi', 'berryFunctions', 'rvg',
  'tidyselect', 'formattable', 'badger', 'framecleaner'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'
Note: found 42966 marked UTF-8 strings
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'polynom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'rms', 'SparseM'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kappaSize', 'shiny'

Packages suggested but not available for checking:
  'binom', 'dplyr', 'ggplot2', 'gt', 'Hmisc', 'knitr', 'magrittr',
  'markdown', 'rmarkdown', 'shinydashboard', 'shinytest', 'testthat',
  'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'survPresmooth'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'callr', 'curl', 'glue', 'jsonlite', 'testthat', 'withr'
Packages unavailable to check Rd xrefs: 'jsonlite', 'callr', 'glue'
'LazyData' is specified without a 'data' directory
Running examples in 'presser-Ex.R' failed
The error most likely occurred in:

> ### Name: httpbin_app
> ### Title: Generic web app for testing HTTP clients
> ### Aliases: httpbin_app
> 
> ### ** Examples
> 
> app <- httpbin_app()
> proc <- new_app_process(app)
Error in loadNamespace(x) : there is no package called 'callr'
Calls: new_app_process ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'data.table', 'ggplot2', 'gridExtra', 'reticulate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'R.rsp', 'qpdf'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'rstudioapi', 'xml2', 'webdriver', 'XRJulia', 'httr'

Packages suggested but not available for checking:
  'V8', 'shinythemes', 'shinyAce', 'miniUI', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'knitr', 'lintr', 'rmarkdown', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Package required but not available: 'crayon'

Packages suggested but not available for checking:
  'covr', 'mockery', 'rstudioapi', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmarkdown'

Package suggested but not available for checking: 'knitr'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'car', 'dplyr', 'forcats', 'kableExtra', 'knitr', 'plotly',
  'stringr', 'tibble', 'tidycat', 'tidyr', 'tidyselect', 'vip'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'rjson', 'httr', 'plyr'

Packages suggested but not available for checking:
  'maptools', 'raster', 'rosm', 'testthat', 'rgdal', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'rjags', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'futile.logger', 'httr', 'jsonlite', 'Metrics', 'XML',
  'magrittr', 'plotly'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maxLik', 'raster', 'pdist', 'splancs', 'lme4', 'truncnorm',
  'numDeriv'

Packages suggested but not available for checking:
  'geoR', 'R.rsp', 'INLA', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'rgdal', 'ggplot2', 'directlabels', 'GenKern', 'fields',
  'gstat', 'maptools'

Packages suggested but not available for checking:
  'geoR', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang', 'tibble', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2', 'gridExtra', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'future', 'future.apply', 'phangorn', 'vcfR'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'permute', 'randomForest', 'reshape2', 'dplyr', 'multtest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lubridate', 'dplyr', 'ggplot2', 'reshape', 'reclin', 'stringr',
  'xgboost', 'caret', 'strex'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'gsubfn', 'stringr', 'purrr', 'jsonlite', 'lubridate',
  'curl', 'stringi'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'survey', 'ggplot2', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'tidyr', 'purrr', 'stringr', 'magrittr', 'tibble',
  'blaster', 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'softImpute'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'deSolve', 'ggplot2', 'tidyr'

Packages suggested but not available for checking:
  'bbmle', 'bipartite', 'cowplot', 'data.table', 'diagram',
  'DiagrammeR', 'DiagrammeRsvg', 'gdata', 'igraph', 'lavaan',
  'magrittr', 'phaseR', 'vegan', 'reshape2', 'rARPACK', 'rsvg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'directlabels', 'gridExtra', 'ggplot2', 'XML', 'ape', 'httr',
  'lubridate', 'plyr', 'scales', 'stringr', 'foreach', 'reshape2',
  'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'scales', 'plot3D'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'devtools', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
basisplot: no visible global function definition for 'abline'
basisplot: no visible global function definition for 'text'
basisplot: no visible global function definition for 'par'
plot.prinsimp: no visible global function definition for 'screeplot'
plot.simpart: no visible global function definition for 'par'
position_text: no visible global function definition for 'par'
position_text: no visible global function definition for 'strwidth'
simpart.formula: no visible global function definition for 'terms'
simpart.formula: no visible global function definition for
  'model.matrix'
varperc: no visible global function definition for 'lines'
varperc: no visible global function definition for 'text'
varsimp: no visible global function definition for 'points'
varsimp: no visible global function definition for 'text'
varsimp: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline lines model.matrix par points screeplot strwidth terms text
Consider adding
  importFrom("graphics", "abline", "lines", "par", "points", "strwidth",
             "text")
  importFrom("stats", "model.matrix", "screeplot", "terms")
to your NAMESPACE file.
Package required but not available: 'knitr'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

Packages suggested but not available for checking: 'testthat', 'AER'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'AnnotationDbi', 'org.Hs.eg.db'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'dplyr', 'ROCR', 'visNetwork'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'proto', 'magrittr', 'Rsymphony', 'tidyr', 'dplyr',
  'Rcpp', 'rlang', 'RcppArmadillo', 'BH'

Packages suggested but not available for checking:
  'knitr', 'gurobi', 'roxygen2', 'rmarkdown', 'testthat', 'raster',
  'tmap', 'sp', 'viridis', 'markdown', 'data.table', 'purrr', 'readr',
  'slam', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'sp'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'rgeos', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'sp', 'sf', 'proto', 'assertthat', 'data.table', 'uuid',
  'slam', 'igraph', 'ape', 'rgeos', 'plyr', 'doParallel', 'magrittr',
  'fasterize', 'exactextractr', 'tibble', 'withr', 'Rcpp',
  'RcppArmadillo', 'BH'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'roxygen2', 'scales', 'RandomFields',
  'maptools', 'PBSmapping', 'gurobi', 'rcbc', 'cplexAPI', 'lpsymphony',
  'Rsymphony', 'rmarkdown', 'prioritizrdata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glmnet'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'pROC'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiagrammeR', 'DiagrammeRsvg', 'htmltools', 'htmlwidgets', 'rsvg',
  'scales', 'shiny', 'shinyjs', 'stringr', 'xml2', 'webp', 'DT', 'rio'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'DiagrammeR'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'flextable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gplots', 'ggplot2'

Package suggested but not available for checking: 'tm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DiagrammeR'

Packages suggested but not available for checking:
  'DiagrammeRsvg', 'knitr', 'rmarkdown', 'rsvg', 'scales', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'farver'

Packages suggested but not available for checking:
  'covr', 'crayon', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'glmnet', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'lubridate', 'raster', 'httr', 'dplyr', 'stringr',
  'magrittr', 'purrr', 'readr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'dplyr', 'httr', 'magrittr', 'passport', 'rnaturalearth',
  'rnaturalearthdata', 'rvest', 'stringr', 'tibble', 'tidyr', 'xml2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'lme4', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggnewscale', 'ggtext', 'dplyr', 'Hmisc', 'magrittr',
  'ExactCIdiff', 'DescTools', 'gridExtra'

Packages suggested but not available for checking:
  'ggpattern', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'generics', 'rlang', 'tidyselect', 'vctrs', 'yardstick'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'modeldata', 'parsnip', 'rmarkdown',
  'rsample', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'LearnBayes', 'ggplot2', 'gridExtra', 'shiny'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'TmCalculator', 'Biostrings'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.pfda.fstep: no visible global function definition for 'dist'
.pfda.mstep: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov dist
Consider adding
  importFrom("stats", "cov", "dist")
to your NAMESPACE file.
Packages required but not available:
  'numDeriv', 'RANN', 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FNN', 'mclust'

Packages suggested but not available for checking:
  'mvtnorm', 'GDAdata', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'combinat', 'fAsianOptions'

Packages suggested but not available for checking:
  'VGAM', 'reshape', 'hypergeo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'purrr', 'mvtnorm', 'Rdpack', 'RcppEigen', 'StanHeaders',
  'BH'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'fable', 'dplyr', 'tidyr', 'magrittr',
  'stringi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'rmarkdown', 'LaplacesDemon', 'shinyMatrix', 'rpivotTable',
  'epitools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Rcpp', 'keras'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'bupaR', 'processmapR', 'rlang', 'magrittr', 'dplyr', 'tidyr',
  'htmlwidgets', 'DiagrammeR', 'stringr', 'htmltools'

Packages suggested but not available for checking:
  'eventdataR', 'edeaR', 'testthat', 'knitr', 'rmarkdown', 'shiny',
  'RColorBrewer', 'lubridate'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'bupaR', 'rlang', 'edeaR', 'stringr', 'glue'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'eventdataR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'bupaR', 'edeaR', 'DiagrammeR', 'ggplot2', 'ggthemes',
  'stringr', 'purrr', 'data.table', 'shiny', 'miniUI', 'glue',
  'forcats', 'hms', 'RColorBrewer', 'plotly', 'rlang', 'scales',
  'tidyr', 'htmltools', 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'eventdataR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'ggplot2', 'dplyr', 'bupaR', 'edeaR', 'shiny', 'miniUI'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'diagram', 'dplyr', 'flextable', 'ggplot2', 'ggrepel',
  'officer', 'psych', 'purrr', 'rrtable', 'semTools', 'stringr',
  'tidyselect', 'rlang', 'tidyr', 'predict3d', 'interactions',
  'ztable', 'rmarkdown'

Packages suggested but not available for checking:
  'shiny', 'shinyWidgets', 'knitr', 'readr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ps', 'R6'

Packages suggested but not available for checking:
  'callr', 'cli', 'covr', 'curl', 'debugme', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'covr', 'testthat', 'tibble'
Package unavailable to check Rd xrefs: 'tibble'
Running 'output.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'permute', 'foreach', 'Rdpack'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2', 'vegan', 'testthat', 'ade4',
  'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'Rcpp'

Packages suggested but not available for checking:
  'microbenchmark', 'logcondens', 'doParallel', 'testthat', 'vdiffr',
  'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'Rsolnp', 'DEoptim', 'AER'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fs', 'rmarkdown', 'rprojroot', 'withr', 'rlang', 'cli', 'whisker'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'gert'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'lava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lpSolveAPI', 'doParallel', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'ggplot2'

Packages suggested but not available for checking:
  'reshape2', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RPMG'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiceKriging', 'KrigInv', 'pGPx', 'microbenchmark', 'quantreg',
  'lhs', 'RColorBrewer', 'rcdd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'pingr', 'processx', 'profile', 'RProtoBuf', 'withr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'gnm'
Packages required but not available: 'rlang', 'tibble', 'withr'

Packages suggested but not available for checking:
  'dm', 'DiagrammeR', 'DiagrammeRsvg', 'RProtoBuf', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'RColorBrewer', 'reshape', 'lavaan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FITSio', 'magicaxis', 'cubature', 'RColorBrewer', 'LaplacesDemon',
  'celestial', 'checkmate'

Packages suggested but not available for checking:
  'fftw', 'knitr', 'rmarkdown', 'ProFound', 'sn'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'R.rsp', 'markdown', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Packages required but not available:
  'Rcpp', 'abind', 'RcppArmadillo', 'RcppProgress', 'splines2'

Packages suggested but not available for checking:
  'testthat', 'gamlss.dist', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sqldf', 'DBI', 'RSQLite', 'RNetCDF', 'settings', 'zoo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'R.rsp', 'testthat', 'BayesianTools'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FITSio', 'magicaxis', 'Rcpp', 'RColorBrewer', 'data.table',
  'celestial', 'foreach'

Packages suggested but not available for checking:
  'ProFit', 'knitr', 'rmarkdown', 'EBImage', 'imager', 'LaplacesDemon',
  'Rfast', 'fastmatch', 'snow', 'doSNOW', 'bigmemory'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'stringr'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'graph', 'Rgraphviz', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/proftools.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/proftools.Rnw'
(Is a VignetteBuilder field missing?)
Running examples in 'proftools-Ex.R' failed
The error most likely occurred in:

> ### Name: filterProfileData
> ### Title: Filter Profile Data
> ### Aliases: filterProfileData
> ### Keywords: programming utilities
> 
> ### ** Examples
> 
> pd <- readProfileData(system.file("samples", "glmEx.out", package="proftools"))
> plotProfileCallGraph(pd)
Error in loadNamespace(x) : there is no package called 'graph'
Calls: plotProfileCallGraph ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package required but not available: 'data.tree'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmlwidgets', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'ggplot2', 'rmarkdown', 'testthat', 'devtools', 'shiny',
  'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages in Depends field not imported from:
  'splines' 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
IndividualPROC: no visible global function definition for 'survfit'
IndividualPROC: no visible global function definition for 'quantile'
Undefined global functions or variables:
  quantile survfit
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Packages required but not available: 'hms', 'prettyunits', 'R6', 'crayon'

Packages suggested but not available for checking:
  'Rcpp', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Packages suggested but not available for checking:
  'beepr', 'crayon', 'pbmcapply', 'progress', 'purrr', 'foreach',
  'plyr', 'doFuture', 'future', 'future.apply', 'furrr', 'rstudioapi',
  'shiny', 'commonmark', 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'vegan', 'deldir', 'geometry',
  'GeneralizedUmatrix', 'shiny', 'shinyjs', 'shinythemes', 'plotly'

Packages suggested but not available for checking:
  'DataVisualizations', 'fastICA', 'tsne', 'FastKNN', 'pcaPP', 'spdep',
  'pracma', 'fields', 'png', 'reshape2', 'Rtsne', 'dendextend', 'umap',
  'uwot', 'DatabionicSwarm', 'parallelDist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'incidence', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'rmarkdown', 'outbreaks',
  'magrittr', 'distcrete', 'svglite', 'EpiEstim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plotly', 'GameTheory', 'lpSolveAPI', 'triangle', 'kappalab',
  'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fs', 'lubridate', 'magrittr', 'purrr', 'readr', 'rlang',
  'rstudioapi', 'sessioninfo', 'stringr', 'tibble', 'vctrs', 'zip'

Packages suggested but not available for checking:
  'forcats', 'here', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'tibble'

Packages suggested but not available for checking:
  'feather', 'reshape', 'plyr', 'formatR', 'qs', 'stringr', 'ggplot2',
  'lubridate', 'log4r', 'DBI', 'RMySQL', 'RSQLite', 'gdata', 'RODBC',
  'RJDBC', 'readxl', 'xlsx', 'tuneR', 'pixmap', 'data.table',
  'RPostgreSQL', 'GetoptLong', 'whisker', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gh', 'magrittr'

Packages suggested but not available for checking:
  'clipr', 'curl', 'dplyr', 'ggplot2', 'knitr', 'purrr', 'reprex',
  'rmarkdown', 'testthat', 'tidyr', 'yaml', 'htmltools', 'httr', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'loo', 'rstantools', 'lme4', 'optimx', 'ggplot2', 'Rcpp',
  'rngtools', 'tidyverse', 'magrittr', 'gamm4', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rstanarm', 'brms', 'testthat', 'knitr', 'rmarkdown', 'glmnet',
  'bayesplot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'spelling', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'BH', 'RcppEigen',
  'StanHeaders'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'cowplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolve'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'Rcpp', 'later', 'rlang', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'future', 'fastmap', 'purrr', 'knitr', 'rmarkdown',
  'vembedr', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'ggplot2', 'scales', 'ggpubr', 'reshape2',
  'stringr', 'strucchange', 'lmtest', 'crayon', 'prophet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'cli'

Packages suggested but not available for checking:
  'callr', 'gert', 'mockery', 'pkgload', 'ps', 'R6', 'rstudioapi',
  'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tmvtnorm', 'Rcpp', 'ff', 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fastcluster', 'dynamicTreeCut'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Matching', 'rlang', 'plyr', 'ggplot2', 'survminer', 'dplyr',
  'gridExtra', 'gtable', 'pROC', 'scales'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rlang', 'dplyr', 'dygraphs', 'extraDistr', 'ggplot2',
  'lubridate', 'RcppParallel', 'rstan', 'rstantools', 'scales',
  'StanHeaders', 'tidyr', 'xts', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'readr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'TeachingDemos', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Biobase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fastcluster', 'ggplot2', 'igraph', 'Rcpp'

Packages suggested but not available for checking:
  'ALDEx2', 'Biobase', 'cccrm', 'compositions', 'data.table',
  'ggdendro', 'knitr', 'limma', 'plotly', 'reshape2', 'rgl',
  'rmarkdown', 'SDMTools', 'testthat', 'vegan'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
addpi: no visible global function definition for 'lines'
genPerms: no visible global function definition for 'combn'
getVar: no visible global function definition for 'glm'
getVar: no visible global function definition for 'binomial'
getVar: no visible global function definition for 'var'
pba: no visible global function definition for 'glm'
pba: no visible global function definition for 'binomial'
pba: no visible global function definition for 'predict'
pba: no visible global function definition for 'rbinom'
pcr: no visible global function definition for 'quantile'
plotpi: no visible global function definition for 'axis'
plotpi: no visible global function definition for 'abline'
plotpi: no visible global function definition for 'lines'
Undefined global functions or variables:
  abline axis binomial combn glm lines predict quantile rbinom var
Consider adding
  importFrom("graphics", "abline", "axis", "lines")
  importFrom("stats", "binomial", "glm", "predict", "quantile", "rbinom",
             "var")
  importFrom("utils", "combn")
to your NAMESPACE file.
Packages required but not available: 'httr', 'dplyr', 'stringr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'stringr', 'httr', 'config', 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'httptest', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'cin'
Packages required but not available:
  'fmsb', 'car', 'RColorBrewer', 'matrixcalc', 'rootSolve', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'PROscorerTools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'equate', 'lavaan', 'mirt', 'plink', 'psych', 'mvnfast'

Packages suggested but not available for checking:
  'shiny', 'shinythemes', 'shinyWidgets', 'shinyjs', 'DT', 'knitr',
  'kableExtra', 'testthat', 'rmarkdown', 'dplyr', 'pkgdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'brglm2'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'iterators', 'Rcpp', 'mathjaxr', 'lifecycle',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'formatR', 'testthat', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'RColorBrewer'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pryr', 'magick', 'dplyr', 'gridExtra', 'ggplot2', 'rjson', 'rlang',
  'shiny'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package in Depends field not imported from: 'MASS'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Packages required but not available:
  'plyr', 'reshape2', 'ggplot2', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'abind', 'ggplot2', 'readr', 'stringr', 'lubridate',
  'narray', 'fANCOVA', 'imputeTS', 'modeest', 'scales', 'tictoc',
  'bizdays', 'torch', 'actuar', 'VGAM', 'moments', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'roxygen2'
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'class' which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: 'class'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
addcircle: no visible global function definition for 'lines'
addclassifierboundary: no visible global function definition for 'par'
addclassifierboundary: no visible global function definition for
  'contour'
plot.protoclass: no visible global function definition for 'box'
plot.protoclass: no visible global function definition for 'rgb2hsv'
plot.protoclass: no visible global function definition for 'col2rgb'
plot.protoclass: no visible global function definition for 'points'
plot.protoclass: no visible global function definition for 'hsv'
predict.protoclass: no visible global function definition for 'knn1'
Undefined global functions or variables:
  box col2rgb contour hsv knn1 lines par points rgb2hsv
Consider adding
  importFrom("grDevices", "col2rgb", "hsv", "rgb2hsv")
  importFrom("graphics", "box", "contour", "lines", "par", "points")
to your NAMESPACE file.
Packages required but not available: 'Rcpp', 'jsonlite'

Packages suggested but not available for checking:
  'spelling', 'curl', 'testthat', 'RProtoBuf', 'sf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'intervals', 'glmnet', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'audio', 'signal', 'tuneR', 'XML'

Package suggested but not available for checking: 'AmigaFFH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'Biostrings', 'GOSemSim', 'foreach',
  'doParallel', 'org.Hs.eg.db'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'rlang', 'dplyr', 'stringr', 'magrittr', 'data.table', 'janitor',
  'progress', 'purrr', 'tidyr', 'ggplot2', 'forcats', 'tibble',
  'plotly', 'ggrepel', 'curl', 'readr', 'lifecycle', 'httr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'proDA', 'limma',
  'dendextend', 'pheatmap', 'heatmaply', 'furrr', 'future',
  'seriation', 'drc', 'igraph', 'stringi', 'STRINGdb'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'rlang', 'tidyr', 'tokenizers', 'SnowballC', 'attempt'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'provGraphR', 'provParseR', 'textutils'

Packages suggested but not available for checking:
  'knitr', 'rdtLite', 'rdt', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'IsoplotR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'httr', 'lubridate', 'magrittr', 'purrr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'provParseR', 'diffobj', 'digest', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'provParseR'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'provParseR'

Packages suggested but not available for checking:
  'digest', 'knitr', 'rdt', 'rdtLite', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'rdt', 'rdtLite'
Package suggested but not available for checking: 'tinytest'
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'entropy', 'proxy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'cba'
Packages required but not available:
  'AhoCorasickTrie', 'docopt', 'purrr', 'readr', 'rlang', 'seqinr',
  'stringr', 'dplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'liteq', 'data.table', 'crayon', 'DBI', 'RSQLite'

Packages suggested but not available for checking: 'docopt', 'foghorn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'ROCR'
Running 'all_tests.R'
Running the tests in 'tests/all_tests.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'PRROC.Rnw' using Sweave

Error: processing vignette 'PRROC.Rnw' failed with diagnostics:
 chunk 47 
Error in library(ggplot2) : there is no package called 'ggplot2'

--- failed re-building 'PRROC.Rnw'

SUMMARY: processing the following file failed:
  'PRROC.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'homtest', 'goftest', 'wavScalogram', 'splus2R', 'lmomco', 'mev'

Packages suggested but not available for checking: 'ismev', 'evd', 'GB2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gglasso', 'SGL', 'glmnet', 'bigsnpr', 'GIGrvg', 'MCMCpack',
  'bdsmatrix', 'bigsparser', 'lmtest', 'mvtnorm', 'propagate',
  'bigparallelr', 'bigstatsr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'fst', 'data.table', 'vctrs', 'tibble', 'cli',
  'pillar', 'crayon', 'fansi', 'backports', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'covr', 'withr', 'nycflights13', 'rmarkdown',
  'knitr', 'bench'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Morpho'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'geomorph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'Rcpp', 'lobstr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'PogromcyDanych', 'PBImisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package in Depends field not imported from: 'rpart'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Packages required but not available: 'LearnBayes', 'SuppDists', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'data.table', 'rjags', 'mvtnorm', 'matrixcalc',
  'ggplot2', 'foreach', 'doParallel', 'MatchIt', 'futile.logger'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.methodsS3', 'R.oo', 'R.utils', 'R.cache', 'matrixStats',
  'aroma.light', 'DNAcopy', 'listenv', 'future'

Packages suggested but not available for checking:
  'Hmisc', 'R.rsp', 'R.devices', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'MCMCpack', 'car', 'lmtest', 'sandwich', 'zoo', 'coda', 'vcd',
  'mvtnorm'
Packages unavailable to check Rd xrefs: 'car', 'MCMCpack', 'coda'
Running examples in 'pscl-Ex.R' failed
The error most likely occurred in:

> ### Name: UKHouseOfCommons
> ### Title: 1992 United Kingdom electoral returns
> ### Aliases: UKHouseOfCommons
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(UKHouseOfCommons)
> tmp <- UKHouseOfCommons[,c("v1","v2","v3")] 
> summary(apply(tmp,1,sum))
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
 0.9999  1.0000  1.0000  1.0000  1.0000  1.0001 
> 
> col <- rep("black",dim(tmp)[1])
> col[UKHouseOfCommons$coninc==1] <- "blue"
> col[UKHouseOfCommons$labinc==1] <- "red"
> col[UKHouseOfCommons$libinc==1] <- "orange"
> 
> library(vcd)
Error in library(vcd) : there is no package called 'vcd'
Execution halted
Errors in running code in vignettes:
when running code in 'countreg.Rnw'

> library("sandwich")

  When sourcing 'countreg.R':
Error: there is no package called 'sandwich'
Execution halted

  'countreg.Rnw'... failed
Error(s) in re-building vignettes:
--- re-building 'countreg.Rnw' using Sweave

Error: processing vignette 'countreg.Rnw' failed with diagnostics:
 chunk 1 (label = preliminaries) 
Error in library("sandwich") : there is no package called 'sandwich'

--- failed re-building 'countreg.Rnw'

SUMMARY: processing the following file failed:
  'countreg.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'ggplot2', 'reshape2', 'lavaan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'rbenchmark', 'reshape2', 'knitr', 'rmarkdown', 'signal', 'formatR',
  'testthat'

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   'inst/doc/multivariate.Rnw'
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   'inst/doc/psd_overview.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
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Running 'simulation-study.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
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  'tidyr', 'tibble', 'stringr', 'lme4', 'miceadds', 'car'

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VignetteBuilder package required for checking but not installed: 'knitr'

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VignetteBuilder package required for checking but not installed: 'knitr'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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  'intamap', 'gstat', 'automap', 'sp', 'doParallel', 'rgdal',
  'foreach', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdpack', 'gridBase', 'randomForest', 'partykit', 'party',
  'BayesTree'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'RCurl', 'SAScii', 'openxlsx', 'futile.logger'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Files named as vignettes but with no recognized vignette engine:
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(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'dplyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'numDeriv'
'library' or 'require' call to 'numDeriv' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
test.problem : g: no visible global function definition for 'grad'
test.problem: no visible global function definition for 'new'
psoptim,test.problem-missing-missing-missing-missing: no visible global
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show,test.result: no visible global function definition for 'show'
show,test.result: no visible global function definition for 'sd'
Undefined global functions or variables:
  grad new sd show
Consider adding
  importFrom("methods", "new", "show")
  importFrom("stats", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
'LazyData' is specified without a 'data' directory
pspearman: no visible global function definition for 'pt'
spearman.test: no visible global function definition for
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spearman.test: no visible global function definition for 'cor'
Undefined global functions or variables:
  complete.cases cor pt
Consider adding
  importFrom("stats", "complete.cases", "cor", "pt")
to your NAMESPACE file.
Packages required but not available:
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  'rlang'

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  'roxygen2', 'kableExtra', 'doParallel', 'stringr', 'scales',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

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VignetteBuilder package required for checking but not installed: 'R.rsp'

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manual.
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Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppEigen', 'testthat'

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VignetteBuilder package required for checking but not installed: 'R.rsp'

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  'testthat', 'tibble'
Packages unavailable to check Rd xrefs: 'testthat', 'processx'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
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  'ggplot2', 'cowplot', 'fANCOVA', 'dplyr', 'tidyr', 'magrittr',
  'tibble', 'sm', 'multcomp', 'rlang', 'ggrepel'

Packages suggested but not available for checking: 'L1pack', 'ggeffects'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'tidyr', 'psych'

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  'rstantools', 'BH', 'RcppEigen', 'StanHeaders', 'RcppParallel'

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VignetteBuilder package required for checking but not installed: 'knitr'

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manual.
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  'kappaSize', 'longpower', 'plotly', 'powerMediation', 'powerSurvEpi',
  'presize', 'pROC', 'pwr', 'pwr2', 'shiny', 'shinycssloaders',
  'shinyFeedback', 'shinyhelper', 'tidyverse', 'writexl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
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VignetteBuilder package required for checking but not installed: 'knitr'

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manual.
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Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'abind', 'numDeriv', 'MHadaptive'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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VignetteBuilder package required for checking but not installed: 'knitr'

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manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'TraMineR', 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'EffectsRelBaseline'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'metafor', 'ggplot2', 'progress', 'curl', 'mathjaxr', 'dplyr',
  'tibble', 'tidyr', 'rlang', 'purrr'

Packages suggested but not available for checking:
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  'cli', 'crayon', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking:
  'effects', 'lmtest', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'glasso', 'optimx', 'VCA', 'pbapply', 'magrittr', 'IsingSampler',
  'tidyr', 'psych', 'GA', 'combinat', 'rlang', 'Rcpp', 'RcppArmadillo',
  'pbv', 'roptim'

Packages suggested but not available for checking:
  'psychTools', 'semPlot', 'graphicalVAR', 'metaSEM', 'mvtnorm',
  'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'scales', 'dplyr', 'stringr', 'ggplot2', 'insight', 'bayestestR',
  'parameters', 'effectsize'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages unavailable to check Rd xrefs: 'multcomp', 'mirt'
Running examples in 'psychotools-Ex.R' failed
The error most likely occurred in:

> ### Name: anchor
> ### Title: Anchor Methods for the Detection of Uniform DIF the Rasch Model
> ### Aliases: anchor anchor.default anchor.formula print.anchor
> ###   print.summary.anchor summary.anchor
> ### Keywords: regression
> 
> ### ** Examples
> 
> ## Verbal aggression data
> data("VerbalAggression", package = "psychotools")
> 
> ## Gini anchor (Strobl et al. 2021) for gender DIF in the self-to-blame situations
> anchor(resp2[, 1:12] ~ gender , data = VerbalAggression)
Error in loadNamespace(x) : there is no package called 'Formula'
Calls: anchor ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available: 'partykit', 'psychotools', 'Formula'

Packages suggested but not available for checking:
  'stablelearner', 'strucchange'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mnormt'

Packages suggested but not available for checking:
  'psychTools', 'GPArotation', 'lavaan', 'lme4', 'Rcsdp', 'graph',
  'knitr', 'Rgraphviz'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/scoring.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'cli', 'dplyr', 'ez', 'xtable'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'label.switching', 'Rcpp', 'rlang', 'tibble',
  'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'covr', 'dplyr', 'ggplot2', 'lda', 'testthat',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'psych'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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  'lmerTest', 'parameters', 'patchwork', 'performance', 'psych',
  'rlang', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
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  'gridExtra', 'interactions', 'knitr', 'nFactors', 'pagedown',
  'qqplotr', 'rmarkdown', 'roxygen2', 'sandwich', 'see', 'semPlot',
  'testthat', 'tidyselect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ltm', 'irtoys'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach', 'magrittr'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'lubridate', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'magrittr', 'formula.tools', 'GGally',
  'purrr', 'ggthemes', 'psych', 'plyr', 'effsize', 'rlang',
  'fastDummies', 'ez', 'tidyselect'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'yaml', 'yum'

Packages suggested but not available for checking:
  'covr', 'DiagrammeR', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tensor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rARPACK', 'plyr', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'misc3d'

Packages suggested but not available for checking: 'rgl', 'geometry'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking:
  'bookdown', 'DiagrammeR', 'dplyr', 'knitr', 'magrittr', 'readr',
  'rmarkdown', 'TITAN2', 'testthat', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aod', 'GLMMadaptive', 'lme4', 'matrixcalc', 'moments', 'mvtnorm',
  'numDeriv', 'tweeDEseq'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bio3d', 'Biostrings', 'curl', 'httr', 'igraph', 'jsonlite',
  'muscle', 'RCurl', 'seqinr', 'xml2'

Packages suggested but not available for checking:
  'KEGGREST', 'knitr', 'markdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'this.path', 'log4r', 'beepr', 'pryr', 'stringr'

Packages suggested but not available for checking:
  'ProjectTemplate', 'testthat', 'knitr', 'rmarkdown', 'markdown',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'glue', 'digest', 'jsonlite', 'purrr', 'tibble', 'assertthat'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 28898 marked UTF-8 strings
'LazyData' is specified without a 'data' directory
Package required but not available: 'RcppDE'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'ggdendro', 'gtable', 'htmlTable',
  'jsonlite', 'knitr', 'magrittr', 'ontologyIndex', 'plyr', 'R6',
  'R6P', 'RColorBrewer', 'reshape2', 'rmarkdown', 'seqinr', 'UpSetR',
  'xml2', 'yaml'

Package suggested but not available for checking: 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'plyr', 'reshape2'

Packages suggested but not available for checking: 'foreach', 'doRNG'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rmeta', 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'data.table', 'rcrossref'

Packages suggested but not available for checking: 'fulltext', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'emmeans', 'ggformula', 'gtsummary', 'huxtable', 'magrittr', 'car',
  'dplyr', 'Epi', 'epiR', 'epitools', 'ggplot2', 'Hmisc', 'lmtest',
  'moonBook', 'sandwich', 'sjlabelled', 'sjmisc', 'sjPlot', 'tibble',
  'tidyselect'

Packages suggested but not available for checking:
  'broom', 'effectsize', 'ggeffects', 'ggfortify', 'ggsci', 'ISwR',
  'jtools', 'knitr', 'latex2exp', 'lme4', 'parameters', 'performance',
  'report', 'rmarkdown', 'rms', 'rstatix', 'see', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
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Packages required but not available:
  'metafor', 'dplyr', 'robumeta', 'ggplot2', 'Rdpack', 'MetaUtility'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'loo', 'truncnorm', 'BH', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'metafor', 'qtl',
  'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'prodlim', 'data.table', 'lava', 'multcomp'

Packages suggested but not available for checking:
  'riskRegression', 'testthat', 'smcfcs', 'rms', 'mitools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'XML', 'R2HTML', 'RJSONIO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'DBI', 'R.utils', 'RSQLite', 'assertthat', 'dplyr', 'readr'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'doParallel', 'foreach', 'ggplot2', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'batchtools', 'fs', 'checkmate', 'orca', 'huge', 'BigQuic', 'glmnet',
  'network', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'batchtools'
Running examples in 'pulsar-Ex.R' failed
The error most likely occurred in:

> ### Name: findConfFile
> ### Title: find config file
> ### Aliases: findConfFile
> 
> ### ** Examples
> 
> ## Default config file provided by pulsar runs code in interactive mode
> ## This is for testing purposes and executes serially.
> findConfFile()
Error in loadNamespace(x) : there is no package called 'batchtools'
Calls: findConfFile ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > suppressPackageStartupMessages(library(testthat))
  Error in library(testthat) : there is no package called 'testthat'
  Calls: suppressPackageStartupMessages -> withCallingHandlers -> library
  Execution halted
Packages required but not available:
  'AnnotationDbi', 'SummarizedExperiment', 'Rsamtools', 'Biobase',
  'S4Vectors', 'GenomicFeatures', 'ggplot2', 'GenomicAlignments'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'TxDb.Hsapiens.UCSC.hg19.knownGene'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fda', 'fda.usc', 'ggplot2', 'monoClust', 'purrr', 'rlang',
  'tibble', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'lubridate', 'rmarkdown', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'RCurl'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggpubr', 'here', 'future', 'magrittr',
  'mvtnorm', 'purrr', 'randomizr', 'readr', 'rlang', 'stringr',
  'tibble', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'kableExtra', 'knitr', 'furrr', 'PowerUpR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ADGofTest', 'metafor', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nls2', 'Metrics', 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'rlang', 'data.table', 'fda', 'itsadug',
  'lazyeval', 'signal', 'tidyr', 'zoo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'rlang', 'VWPre', 'ggplot2', 'shiny', 'tidyr', 'robustbase',
  'zoo', 'signal'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gridExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rjags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'plyr', 'rappdirs', 'stringr', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'lme4', 'ranger', 'randomForest'
'LazyData' is specified without a 'data' directory
Running 'purged.filesizes.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'doSNOW', 'foreach', 'progress', 'Rcpp', 'RcppProgress'

Packages suggested but not available for checking:
  'caret', 'coda', 'dplyr', 'e1071', 'ggplot2', 'glmnet', 'gtable',
  'knitr', 'magrittr', 'pander', 'plyr', 'purrr', 'rmarkdown',
  'scales', 'stringr', 'testthat', 'tibble', 'tidyr', 'tidyselect'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'magrittr', 'purrr', 'Rcpp', 'BH'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'rlang'

Packages suggested but not available for checking:
  'covr', 'crayon', 'dplyr', 'knitr', 'rmarkdown', 'testthat',
  'tibble', 'tidyselect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'cli', 'glue', 'httr', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'covr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lubridate', 'readxl', 'reshape', 'reshape2', 'sqldf', 'kableExtra',
  'plyr', 'dplyr', 'tidyverse', 'readr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'devtools', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dcmle', 'dclone', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'scales', 'zipfR', 'pracma', 'gsl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'e1071', 'testthat', 'knitr', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/pvar_intro.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'progress', 'data.table', 'bit64', 'glue',
  'RColorBrewer', 'ggplot2', 'ggfittext'

Packages suggested but not available for checking:
  'furrr', 'plotly', 'patchwork'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'splancs', 'ape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'maps', 'MazamaCoreUtils', 'MazamaSpatialUtils', 'curl',
  'dygraphs', 'geosphere', 'ggmap', 'glue', 'httr', 'jsonlite',
  'leaflet', 'lubridate', 'magrittr', 'mapproj', 'maptools', 'openair',
  'png', 'purrr', 'raster', 'RColorBrewer', 'rgdal', 'RgoogleMaps',
  'readr', 'reshape2', 'rlang', 'sf', 'slippymath', 'sp', 'stringr',
  'tibble', 'tidyr', 'xts'

Packages suggested but not available for checking:
  'knitr', 'lintr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'dplyr', 'tidyr', 'ez', 'phia', 'afex', 'MBESS', 'lavaan',
  'semTools', 'quantreg', 'broom', 'lmtest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages suggested but not available for checking:
  'eRm', 'roxygen2', 'testthat'
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'scales', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'stringr', 'reshape2', 'RJSONIO', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'rjstat', 'jsonlite', 'pxweb'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'checkmate', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'remotes', 'rmarkdown', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'maptools', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'robustbase'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fansi', 'htmlwidgets', 'rstudioapi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'curl', 'XML'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'reticulate', 'tibble'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xml2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'tidyr', 'ggcorrplot', 'multcompView',
  'PMCMRplus', 'crayon', 'purrr', 'haven', 'rlang', 'ggExtra',
  'patchwork'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'kableExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'data.table', 'copula', 'viridis', 'ggExtra', 'dplyr',
  'cowplot', 'Rcpp'

Packages suggested but not available for checking:
  'rmarkdown', 'reshape2', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'Formula'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'mvtnorm', 'plyr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ncdf4', 'gplots', 'XML', 'gdata', 'moments', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'mcmcse', 'stableGR', 'RcppDist', 'knitr', 'rmarkdown',
  'RcppArmadillo'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/qbld.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'plyr', 'QCA', 'testit', 'purrr', 'UpSetR', 'magrittr',
  'stringi', 'rlist'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
csQCAbinTest: no visible global function definition for 'p.adjust'
fsQCApermTest: no visible global function definition for 'p.adjust'
mvQCAbinTest: no visible global function definition for 'p.adjust'
p.threshold.adjust: no visible global function definition for
  'p.adjust'
plot.fsQCApt: no visible global function definition for 'dev.cur'
plot.fsQCApt: no visible global function definition for 'dev.new'
plot.fsQCApt: no visible global function definition for 'par'
plot.fsQCApt: no visible global function definition for 'density'
plot.fsQCApt: no visible global function definition for 'axis'
plot.fsQCApt: no visible global function definition for 'polygon'
plot.fsQCApt: no visible global function definition for 'points'
plot.fsQCApt: no visible global function definition for 'hist'
summary.csQCAbt: no visible global function definition for
  'printCoefmat'
summary.fsQCApt: no visible global function definition for
  'printCoefmat'
summary.mvQCAbt: no visible global function definition for
  'printCoefmat'
Undefined global functions or variables:
  axis density dev.cur dev.new hist p.adjust par points polygon
  printCoefmat
Consider adding
  importFrom("grDevices", "dev.cur", "dev.new")
  importFrom("graphics", "axis", "hist", "par", "points", "polygon")
  importFrom("stats", "density", "p.adjust", "printCoefmat")
to your NAMESPACE file.
Packages required but not available: 'ggplot2', 'ggforce', 'devtools'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolve'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'admisc', 'shiny', 'venn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'ggplot2', 'directlabels', 'QCA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'arules', 'rJava', 'arc'

Packages suggested but not available for checking:
  'arulesCBA', 'rCBA', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'dplyr', 'magrittr', 'purrr', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'ks', 'mclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quantreg', 'cSEM', 'broom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'qcc', 'fda.usc', 'mvtnorm'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'qdap'
Packages required but not available:
  'qdapDictionaries', 'qdapRegex', 'qdapTools', 'RColorBrewer',
  'chron', 'dplyr', 'gender', 'ggplot2', 'gridExtra', 'igraph', 'NLP',
  'openNLP', 'openxlsx', 'plotrix', 'RCurl', 'reshape2', 'scales',
  'stringdist', 'tidyr', 'tm', 'venneuler', 'wordcloud', 'XML'

Packages suggested but not available for checking:
  'koRpus', 'knitr', 'lda', 'proxy', 'stringi', 'SnowballC', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringi'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'chron', 'data.table', 'RCurl', 'XML'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tinytest'
Packages required but not available:
  'Rsolnp', 'futile.logger', 'gamlss', 'gamlss.dist', 'vegan',
  'bootstrap', 'Compositional', 'TMB', 'compositions', 'dplyr', 'Rcpp',
  'RcppEigen'

Packages suggested but not available for checking:
  'plyr', 'knitr', 'rmarkdown', 'testthat', 'gtools'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rsolnp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppGSL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'RColorBrewer', 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'plyr', 'doParallel'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'RhpcBLASctl', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'robustbase', 'zipfR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'qgcomp', 'arm', 'future', 'future.apply', 'ggplot2', 'gridExtra'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arm', 'future', 'future.apply', 'generics', 'ggplot2', 'gridExtra',
  'pscl', 'tibble'

Packages suggested but not available for checking:
  'broom', 'devtools', 'knitr', 'markdown', 'mice'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'cubature'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'statmod', 'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'psych', 'lavaan', 'plyr', 'Hmisc', 'igraph', 'jpeg', 'png',
  'colorspace', 'corpcor', 'reshape2', 'ggplot2', 'glasso', 'fdrtool',
  'gtools', 'pbapply', 'abind'

Packages suggested but not available for checking: 'BDgraph', 'huge'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ade4', 'FactoClass', 'FactoMineR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'Hmisc', 'rms', 'cmprsk'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rmarkdown', 'testthat', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'latticeExtra', 'scales', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'purrr', 'rstudioapi'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'sparsesvd', 'docopt'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
chooseMDoubleBootstrap: no visible global function definition for
  'model.matrix'
chooseMDoubleBootstrap: no visible global function definition for
  'as.formula'
chooseMDoubleBootstrap: no visible global function definition for
  'model.frame'
chooseMDoubleBootstrap: no visible global function definition for 'lm'
chooseMDoubleBootstrap: no visible global function definition for
  'coef'
chooseMDoubleBootstrap: no visible global function definition for
  'quantile'
chooseMDoubleBootstrap: no visible global function definition for
  'qnorm'
getModel: no visible global function definition for 'lm'
getModel: no visible global function definition for 'model.matrix'
getModel: no visible global function definition for 'as.formula'
getModel: no visible global function definition for 'model.frame'
getModel: no visible global function definition for 'model.response'
getModel: no visible global function definition for 'coef'
getModel: no visible global function definition for 'qnorm'
qLearn: no visible global function definition for 'model.matrix'
qLearn: no visible global function definition for 'as.formula'
qLearn: no visible global function definition for 'model.frame'
qLearn: no visible global function definition for 'coef'
qLearn: no visible global function definition for 'lm'
qLearn: no visible global function definition for 'quantile'
Undefined global functions or variables:
  as.formula coef lm model.frame model.matrix model.response qnorm
  quantile
Consider adding
  importFrom("stats", "as.formula", "coef", "lm", "model.frame",
             "model.matrix", "model.response", "qnorm", "quantile")
to your NAMESPACE file.
Package required but not available: 'fitdistrplus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'qad'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'psych', 'GPArotation', 'digest', 'knitr', 'xtable', 'shiny', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'Rcpp', 'rstan', 'BH', 'RcppEigen', 'StanHeaders'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'awsMethods', 'oro.nifti', 'stringr', 'aws', 'adimpro'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RUnit'
pcAxisCubeMake: no visible global function definition for 'aggregate'
pcAxisCubeToCSV: no visible global function definition for 'write.csv'
Undefined global functions or variables:
  aggregate write.csv
Consider adding
  importFrom("stats", "aggregate")
  importFrom("utils", "write.csv")
to your NAMESPACE file.
Packages required but not available: 'dplyr', 'missMethods'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'minpack.lm', 'rgl', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'askpass', 'curl'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'checkmate', 'RcppEigen'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'magrittr', 'ggplot2', 'knitr'

Packages suggested but not available for checking:
  'rmarkdown', 'markdown', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'gridExtra', 'testthat', 'vdiffr',
  'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'rlang', 'ggplot2', 'robustbase', 'distr',
  'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'calibrate'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr', 'robustbase'

Packages suggested but not available for checking:
  'shiny', 'devtools', 'shinyBS', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'rvest', 'tidyverse', 'dplyr', 'stringr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'shiny', 'shinythemes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'leaflet', 'magrittr', 'miniUI', 'raster', 'scales',
  'shiny', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Package suggested but not available for checking: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'jsonlite', 'Rmpfr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'latticeExtra', 'knitr', 'rmarkdown', 'lme4', 'ggplot2'

Packages suggested but not available for checking:
  'fitODBOD', 'VGAM', 'glmmTMB', 'gamlss', 'prettydoc', 'DHARMa',
  'kableExtra', 'plotrix', 'dfoptim', 'optimx', 'bookdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'bookdown', 'prettydoc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'qrcm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R.utils', 'assertthat', 'stringr'

Packages suggested but not available for checking: 'httr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quantreg', 'SparseM', 'truncSP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'Rcpp', 'base64enc', 'png'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quantreg', 'coda', 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'lqr', 'quantreg', 'psych', 'ald'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xts'

Packages suggested but not available for checking: 'knitr', 'qrmtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gsl', 'mvtnorm', 'numDeriv', 'timeSeries', 'Rcpp', 'timeDate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantmod', 'Quandl', 'zoo', 'xts', 'rugarch', 'ADGofTest'

Packages suggested but not available for checking:
  'combinat', 'copula', 'qrng', 'sfsmisc', 'RColorBrewer', 'sn',
  'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'randtoolbox', 'copula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'lqr', 'quantreg', 'psych', 'ald', 'progress'

Package suggested but not available for checking: 'qrLMM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'cowplot', 'ggplot2', 'gridExtra', 'purrr'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'roxygen2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RApiSerialize', 'stringfish'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr', 'data.table'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RSQLite', 'DBI', 'dplyr', 'dbplyr', 'tibble', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'glue', 'pbapply', 'processx', 'purrr', 'random', 'readr',
  'ssh', 'stringr', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'quantreg', 'BMisc', 'formula.tools', 'ggplot2', 'texreg',
  'pbapply', 'knitr', 'msm'

Package suggested but not available for checking: 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'qtl', 'qtl2'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fst', 'qtl2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'assertthat', 'dplyr', 'ggplot2', 'purrr', 'stringr',
  'tidyr', 'rlang', 'RColorBrewer', 'qtl2', 'ggrepel'

Packages suggested but not available for checking:
  'devtools', 'testthat', 'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'purrr', 'stringr', 'ggplot2', 'assertthat',
  'RColorBrewer', 'qtl2', 'qtl2fst', 'fst', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'qtl2ggplot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'gemma2', 'ggplot2', 'magrittr', 'Rcpp', 'rlang', 'tibble',
  'RcppEigen'

Packages suggested but not available for checking:
  'covr', 'mvtnorm', 'knitr', 'rmarkdown', 'testthat', 'broman',
  'devtools', 'qtl2', 'parallelly'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'yaml', 'jsonlite', 'data.table', 'RSQLite', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'devtools', 'roxygen2', 'vdiffr', 'qtl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'qtl'
Package unavailable to check Rd xrefs: 'qtl'
Running examples in 'qtlbook-Ex.R' failed
The error most likely occurred in:

> ### Name: ch3a
> ### Title: Data with a phenotype error
> ### Aliases: ch3a
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(ch3a)
> 
> # phenotype problem
> pairs(ch3a$pheno)
> ch3a$pheno[ch3a$pheno[,4]==0,] # individual 159
    phe1 phe2 phe3 phe4 phe5
159   50   75   70    0   80
> 
> # individuals with similar genotypes
> library(qtl)
Error in library(qtl) : there is no package called 'qtl'
Execution halted
Packages required but not available: 'qtl', 'htmlwidgets'

Packages suggested but not available for checking:
  'htmltools', 'jsonlite', 'knitr', 'devtools', 'roxygen2',
  'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tiff', 'rgl', 'plot3D'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
ci.length: no visible global function definition for 'qexp'
detectable.bc: no visible global function definition for 'uniroot'
detectable.f2: no visible global function definition for 'uniroot'
detectable.ri: no visible global function definition for 'uniroot'
nu: no visible global function definition for 'pnorm'
nullinfo: no visible global function definition for 'qnorm'
nullinfo: no visible global function definition for 'dnorm'
optselection.bc: no visible global function definition for 'optimize'
optselection.f2: no visible global function definition for 'optimize'
optspacing.bc: no visible global function definition for 'optim'
optspacing.bc: no visible global function definition for 'optimize'
optspacing.f2: no visible global function definition for 'optim'
optspacing.f2: no visible global function definition for 'optimize'
powercalc.bc: no visible global function definition for 'pchisq'
powercalc.f2: no visible global function definition for 'pchisq'
samplesize.bc: no visible global function definition for 'uniroot'
samplesize.f2: no visible global function definition for 'uniroot'
samplesize.ri: no visible global function definition for 'uniroot'
tailprob: no visible global function definition for 'pchisq'
thresh: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  dnorm optim optimize pchisq pnorm qexp qnorm uniroot
Consider adding
  importFrom("stats", "dnorm", "optim", "optimize", "pchisq", "pnorm",
             "qexp", "qnorm", "uniroot")
to your NAMESPACE file.
Package unavailable to check Rd xrefs: 'qtl'
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'qtl', 'Rcpp', 'openxlsx', 'stringr', 'data.table',
  'glmnet', 'doParallel', 'foreach', 'QTL.gCIMapping'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'openxlsx', 'readxl', 'lars', 'stringr', 'data.table',
  'glmnet', 'doParallel', 'foreach', 'qtl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'qtl', 'mnormt', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'qtl', 'igraph', 'sem', 'graph', 'pcalg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'abind', 'gtools', 'CompQuadForm', 'RLRsim', 'mvtnorm',
  'quadprog', 'Rcpp', 'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'mappoly', 'rmarkdown', 'devtools', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'test_io.R'
  Comparing 'test_io.Rout' to 'test_io.Rout.save' ... OK
  Running 'test_mapqtl_io.R'
  Comparing 'test_mapqtl_io.Rout' to 'test_mapqtl_io.Rout.save' ... OK
  Running 'test_qtl.R'
  Running 'test_scanonevar.R'
  Comparing 'test_scanonevar.Rout' to 'test_scanonevar.Rout.save' ... OK
  Running 'test_tidyIO.R'
  Comparing 'test_tidyIO.Rout' to 'test_tidyIO.Rout.save' ... OK
  Running 'testaugmentation.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'gdata'

Package suggested but not available for checking: 'qtl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgenoud', 'quantreg', 'Rdpack', 'MatrixModels'

Packages suggested but not available for checking:
  'stringr', 'testthat', 'faraway', 'quantoptr', 'survminer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmx', 'gtools', 'np', 'quantreg', 'numDeriv', 'Rcpp',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'survey', 'mice', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'graph', 'RBGL', 'combinat', 'igraph'

Package suggested but not available for checking: 'Rmpfr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixcalc', 'geigen'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'gridBase', 'viridis', 'png', 'sp', 'geometry', 'reproj',
  'scales', 'palr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'PearsonDS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'reshape2', 'scales', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'lars', 'elasticnet', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'combinat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'glue', 'leaflet', 'purrr', 'rlang', 'sf'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'testthat', 'tigris', 'tidycensus', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randtoolbox', 'assertthat', 'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'maps', 'rmarkdown', 'rgl', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'glue', 'httr', 'jsonlite', 'lifecycle',
  'lubridate', 'purrr', 'readr', 'rlang', 'sjlabelled', 'stringr',
  'tibble', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'vcr', 'webmockr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'tidyr', 'ggplot2', 'GGally', 'DT'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Packages required but not available:
  'expm', 'Rfast', 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'httr', 'zoo', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'timeSeries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RColorBrewer', 'caret', 'dplyr', 'e1071', 'ggplot2', 'ggrepel',
  'gplots', 'readr', 'reshape2', 'rlang', 'plyr', 'pROC', 'scales',
  'stringr', 'tibble', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'locpol', 'np', 'quantreg', 'quantregGrowth'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lubridate'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dr', 'mvtnorm', 'quantreg'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'testthat', 'pracma',
  'PerformanceAnalytics', 'png'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fastmatch', 'magrittr', 'Rcpp', 'RcppParallel', 'SnowballC',
  'stopwords', 'stringi', 'xml2', 'yaml', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'spelling', 'testthat', 'formatR', 'tm', 'tokenizers',
  'knitr', 'lda', 'lsa', 'dplyr', 'purrr', 'quanteda.textmodels',
  'quanteda.textstats', 'quanteda.textplots', 'RColorBrewer', 'slam',
  'spacyr', 'stm', 'text2vec', 'topicmodels', 'jsonlite', 'quanteda',
  'tibble', 'tidytext', 'xtable', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'LiblineaR', 'quanteda', 'RSpectra', 'Rcpp',
  'RcppParallel', 'SparseM', 'stringi', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ca', 'covr', 'fastNaiveBayes', 'knitr', 'lsa', 'microbenchmark',
  'naivebayes', 'quanteda.textplots', 'spelling', 'testthat',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quanteda', 'extrafont', 'ggplot2', 'ggrepel', 'sna', 'igraph',
  'network', 'RColorBrewer', 'Rcpp', 'stringi'

Packages suggested but not available for checking:
  'knitr', 'quanteda.textmodels', 'quanteda.textstats', 'rmarkdown',
  'spelling', 'testthat', 'wordcloud'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quanteda', 'nsyllable', 'proxyC', 'Rcpp', 'RcppParallel', 'stringi',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'entropy', 'ExPosition', 'proxy', 'rmarkdown', 'spelling', 'svs',
  'testthat', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'goftest', 'LaplacesDemon', 'rstpm2', 'scales', 'tclust'

Packages suggested but not available for checking:
  'fitdistrplus', 'lmtest', 'gk', 'OpVaR', 'dgof'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'kableExtra', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'np', 'quantreg', 'SparseM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'units', 'errors', 'Rcpp'

Packages suggested but not available for checking:
  'pillar', 'dplyr', 'vctrs', 'tidyr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'hetGP', 'ggplot2', 'reshape2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'zoo', 'TTR', 'curl'

Packages suggested but not available for checking:
  'DBI', 'RMySQL', 'RSQLite', 'timeSeries', 'xml2', 'downloader',
  'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'GGally', 'ggplot2', 'network', 'pheatmap', 'rgl', 'sna'
Running examples in 'QuantNorm-Ex.R' failed
The error most likely occurred in:

> ### Name: QuantNorm
> ### Title: Adjust the distance matrix by quantile normalization for data
> ###   with batch effect
> ### Aliases: QuantNorm
> 
> ### ** Examples
> 
> 
> library(pheatmap) #drawing heatmap
Error in library(pheatmap) : there is no package called 'pheatmap'
Execution halted
Packages required but not available:
  'stringr', 'rgenoud', 'quantreg', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'randomForest', 'RColorBrewer'

Packages suggested but not available for checking:
  'gss', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'mnormt', 'fda', 'Rearrangement'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ranger'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SparseM', 'MatrixModels'

Packages suggested but not available for checking:
  'tripack', 'akima', 'rgl', 'logspline', 'nor1mix', 'Formula', 'zoo',
  'R.rsp', 'conquer'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'abind', 'zoo', 'snowfall', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'fasttime', 'RCurl', 'readxl', 'Rcpp', 'R6'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rugarch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'neuralnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'Rdpack', 'Ternary', 'TreeTools', 'viridisLite', 'Rcpp'

Packages suggested but not available for checking:
  'bookdown', 'knitr', 'phangorn', 'Rcpp', 'rmarkdown', 'testthat',
  'usethis', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rmarkdown', 'jsonlite', 'yaml', 'processx', 'rstudioapi', 'later'

Packages suggested but not available for checking: 'testthat', 'rsconnect'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'edgeR', 'pracma'

Packages suggested but not available for checking: 'BB', 'nleqslv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'shiny', 'miniUI', 'rstudioapi', 'highr', 'styler', 'classInt',
  'htmltools', 'labelled'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'dplyr', 'ggplot2', 'tidyr', 'janitor',
  'forcats', 'knitr', 'rmarkdown', 'survey', 'Hmisc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'str2str', 'plyr', 'car', 'psych', 'psychTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'kernlab'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'tidyr', 'dplyr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numbers'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'distances', 'scclust'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'testthat', 'hedgehog', 'purrr', 'tibble', 'data.table', 'hms',
  'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'readr', 'curl', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'sp', 'rgeos', 'rgdal', 'httr', 'sf'

Packages suggested but not available for checking: 'testthat', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'distances', 'sandwich', 'scclust'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'optimParallel', 'doParallel'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'backports', 'data.table', 'fpCompare', 'ggplot2', 'gridBase',
  'igraph', 'raster', 'RColorBrewer', 'rgdal', 'rgeos', 'sp'

Packages suggested but not available for checking:
  'covr', 'fastshp', 'hunspell', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DEoptim', 'dplyr', 'ggplot2', 'MPDiR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'rlang', 'psych', 'nortest', 'dplyr'

Packages suggested but not available for checking:
  'ggthemes', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ape'

Packages suggested but not available for checking: 'spider', 'adegenet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BayesFactor', 'MCMCpack', 'checkmate', 'ellipsis', 'janitor',
  'purrr', 'rlang', 'stringr', 'magrittr', 'dplyr', 'ggplot2',
  'tibble', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Note: found 99 marked UTF-8 strings
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'stringr', 'magrittr', 'vroom', 'purrr', 'glue', 'dplyr', 'tidyjson',
  'tibble', 'lubridate', 'rlang', 'tidyr', 'httr', 'rvest', 'progress',
  'writexl', 'concatenate', 'memoise'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'partykit', 'Formula'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'purrr', 'magrittr', 'ALDqr', 'bayesQR', 'MCMCpack',
  'ggplot2', 'knitr', 'gridExtra', 'GIGrvg', 'dplyr', 'tidyr',
  'robustbase', 'ald'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'dplyr', 'testthat'
Note: found 12928 marked UTF-8 strings
Running examples in 'quRan-Ex.R' failed
The error most likely occurred in:

> ### Name: quran_ar
> ### Title: The text of the Qur'an (Arabic, all vowels)
> ### Aliases: quran_ar
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # See first few rows
> head(quran_ar)
  surah_id ayah_id surah_title_ar surah_title_en surah_title_en_trans
1        1       1        الفاتحة     Al-Faatiha          The Opening
2        1       2        الفاتحة     Al-Faatiha          The Opening
3        1       3        الفاتحة     Al-Faatiha          The Opening
4        1       4        الفاتحة     Al-Faatiha          The Opening
5        1       5        الفاتحة     Al-Faatiha          The Opening
6        1       6        الفاتحة     Al-Faatiha          The Opening
  revelation_type                   text surah ayah ayah_title juz manzil page
1          Meccan ﻿بِسْمِ اللَّهِ الرَّحْمَٰنِ الرَّحِيمِ     1    1        1:1   1      1    1
2          Meccan  الْحَمْدُ لِلَّهِ رَبِّ الْعَالَمِينَ     1    2        1:2   1      1    1
3          Meccan          الرَّحْمَٰنِ الرَّحِيمِ     1    3        1:3   1      1    1
4          Meccan         مَالِكِ يَوْمِ الدِّينِ     1    4        1:4   1      1    1
5          Meccan إِيَّاكَ نَعْبُدُ وَإِيَّاكَ نَسْتَعِينُ     1    5        1:5   1      1    1
6          Meccan  اهْدِنَا الصِّرَاطَ الْمُسْتَقِيمَ     1    6        1:6   1      1    1
  hizb_quarter sajda sajda_id sajda_recommended sajda_obligatory
1            1 FALSE       NA                NA               NA
2            1 FALSE       NA                NA               NA
3            1 FALSE       NA                NA               NA
4            1 FALSE       NA                NA               NA
5            1 FALSE       NA                NA               NA
6            1 FALSE       NA                NA               NA
> 
> # How many ayahs are in each surah?
> library(dplyr)
Error in library(dplyr) : there is no package called 'dplyr'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'glmnet', 'lars', 'flare'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'relimp'

Package which this enhances but not available for checking: 'psychotools'
Package unavailable to check Rd xrefs: 'psychotools'
Packages required but not available:
  'MTS', 'pls', 'CORElearn', 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'knitr', 'Rcpp', 'rlang', 'xfun', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rbenchmark', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'fda'
Running examples in 'QZ-Ex.R' failed
The error most likely occurred in:

> ### Name: fda.geigen
> ### Title: Generalized Eigen Analysis as in fda Package
> ### Aliases: fda.geigen
> ### Keywords: programming
> 
> ### ** Examples
> 
> library(QZ, quiet = TRUE)
> 
> A <- matrix(as.double(1:6), 2)
> B <- matrix(as.double(c(2, 1, 1, 2)), 2)
> C <- diag(as.double(1:3))
> 
> ret.qz <- fda.geigen(A, B, C)
> 
> ### Verify
> library(fda, quiet = TRUE)
Error in library(fda, quiet = TRUE) : there is no package called 'fda'
Execution halted
Package required but not available: 'learnr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
mutualCoherence : .setOneMutualP: no visible global function definition
  for 'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
Packages required but not available:
  'jsonlite', 'ggplot2', 'dplyr', 'pinyin', 'maps'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ahaz', 'pracma', 'zoo', 'caTools', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

Packages suggested but not available for checking:
  'bbmle', 'lme4', 'ggplot2', 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/R2admb.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BayesXsrc', 'colorspace'

Packages suggested but not available for checking:
  'akima', 'coda', 'maps', 'maptools', 'MBA', 'shapefiles', 'sp',
  'spdep', 'rgdal', 'spData', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sampling', 'devtools', 'glue'

Package suggested but not available for checking: 'ReGenesees'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'htmltools', 'jsonlite', 'rstudioapi'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'R6', 'shiny', 'shinytest', 'testthat',
  'webshot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'stringr', 'rstudioapi'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'glue', 'magrittr', 'r2dii.data', 'rlang', 'tidyr',
  'tidyselect', 'zoo'

Packages suggested but not available for checking:
  'covr', 'r2dii.match', 'rmarkdown', 'roxygen2', 'spelling',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'covr', 'rlang', 'rmarkdown', 'testthat'
Note: found 34 marked UTF-8 strings
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'data.table', 'dplyr', 'glue', 'magrittr', 'purrr', 'r2dii.data',
  'rlang', 'stringdist', 'stringi', 'tibble', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forcats', 'ggplot2', 'ggrepel', 'glue', 'magrittr',
  'r2dii.data', 'rlang', 'scales'

Packages suggested but not available for checking:
  'covr', 'r2dii.analysis', 'r2dii.match', 'rmarkdown', 'spelling',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgdal', 'sp', 'matrixStats'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'plyr', 'devFunc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lmerTest', 'pbkrtest', 'ggplot2', 'afex', 'gridExtra', 'data.table',
  'dplyr'

Packages suggested but not available for checking: 'lme4', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjags', 'abind', 'coda', 'R2WinBUGS'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'broomExtra', 'dplyr', 'magrittr', 'rlang', 'rockchalk',
  'stringr', 'tidyselect'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R2WinBUGS', 'digest', 'texreg', 'foreach', 'doParallel', 'coda',
  'memisc', 'broom', 'tibble'

Packages suggested but not available for checking:
  'doBy', 'car', 'lmtest', 'mitools', 'reshape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'caret', 'e1071', 'earth', 'evtree', 'glmnet', 'mlbench', 'mlr',
  'partykit', 'randomForest', 'ranger', 'xgboost'
Packages suggested but not available for checking: 'rcom', 'RDCOMClient'
Malformed Title field: should not end in a period.
'library' or 'require' calls in package code:
  'RDCOMClient' 'rcom'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
PPT.AddBlankSlide: no visible global function definition for
  'comIsValidHandle'
PPT.AddDataFrame: no visible global function definition for
  'comIsValidHandle'
PPT.AddDataFrame: no visible global function definition for
  'write.table'
PPT.AddDataFrame: no visible global function definition for 'write.csv'
PPT.AddGraphicstoSlide: no visible global function definition for
  'comIsValidHandle'
PPT.AddGraphicstoSlide: no visible global function definition for
  'dev.cur'
PPT.AddGraphicstoSlide: no visible global function definition for
  'dev.list'
PPT.AddGraphicstoSlide: no visible global function definition for
  'savePlot'
PPT.AddTextSlide: no visible global function definition for
  'comIsValidHandle'
PPT.AddTitleOnlySlide: no visible global function definition for
  'comIsValidHandle'
PPT.AddTitleSlide: no visible global function definition for
  'comIsValidHandle'
PPT.ApplyTemplate: no visible global function definition for
  'comIsValidHandle'
PPT.Close: no visible global function definition for 'comIsValidHandle'
PPT.Init: no visible global function definition for 'comCreateObject'
PPT.Init: no visible global function definition for 'comIsValidHandle'
PPT.Init: no visible global function definition for 'COMCreate'
PPT.Present: no visible global function definition for
  'comIsValidHandle'
PPT.SaveAs: no visible global function definition for
  'comIsValidHandle'
PPT.getAbsolutePath : PPT.filePath: no visible global function
  definition for 'readWindowsShortcut'
Undefined global functions or variables:
  COMCreate comCreateObject comIsValidHandle dev.cur dev.list
  readWindowsShortcut savePlot write.csv write.table
Consider adding
  importFrom("grDevices", "dev.cur", "dev.list", "savePlot")
  importFrom("utils", "write.csv", "write.table")
to your NAMESPACE file.
Packages required but not available: 'glue', 'officer'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'covr', 'testthat', 'rmarkdown', 'microbenchmark', 'hash'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'stringi', 'knitr', 'rmarkdown', 'emmeans', 'tidyr', 'devtools',
  'covr', 'dplyr', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'r2rtf-Ex.R' failed
The error most likely occurred in:

> ### Name: nrow_paragraph
> ### Title: Calculate Number of Rows for a Paragraph
> ### Aliases: nrow_paragraph
> 
> ### ** Examples
> 
> library(dplyr) # required for running example
Error in library(dplyr) : there is no package called 'dplyr'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'stringr', 'magrittr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales', 'car'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/r2spss-intro.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rmumps', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'RcppXPtrUtils', 'slam', 'RUnit', 'deSolve', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sysfonts'

Packages suggested but not available for checking: 'XML', 'Cairo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'stringr', 'RMark'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'rcom', 'RDCOMClient'
'library' or 'require' calls in package code:
  'RDCOMClient' 'rcom'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package required but not available: 'coda'

Package suggested but not available for checking: 'BRugs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 's20x', 'leaps', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmlwidgets', 'magrittr', 'bio3d'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny', 'colourpicker', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'R.rsp', 'testthat', 'roxygen2',
  'BayesianTools', 'sensitivity', 'dplyr', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'plyr', 'reshape2', 'whisker', 'tinytex'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bitops', 'RCurl', 'RJSONIO'

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'jsonlite'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggrepel', 'here', 'magick', 'magrittr', 'pROC',
  'psych', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pander'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'corpcor', 'gdata', 'gplots', 'gtools', 'pso', 'truncnorm',
  'kableExtra'

Packages suggested but not available for checking:
  'maps', 'testthat', 'knitr', 'rmarkdown', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'httr', 'xml2', 'assertthat'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'curl', 'data.table', 'httr', 'raster', 'rJava', 'sf',
  'sfheaders'

Packages suggested but not available for checking:
  'akima', 'covr', 'dplyr', 'ggplot2', 'knitr', 'mapview', 'rmarkdown',
  'rgdal', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'pkgdown', 'testthat', 'R6'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'causaleffect', 'data.table', 'dosearch', 'igraph', 'R6'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'qgraph', 'sqldf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R6'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'magrittr', 'digest', 'hellno'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glue', 'rstudioapi', 'miniUI', 'shiny', 'dplyr', 'magrittr',
  'stringr', 'purrr'

Packages suggested but not available for checking: 'R6', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'collections', 'dplyr', 'purrr', 'stringr', 'R6', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'DBI', 'RSQLite', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'pryr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'bayesmeta'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'reshape2', 'plotly', 'gtools', 'cowplot',
  'readr', 'dendextend', 'data.table', 'plyr', 'ggdendro', 'gridExtra',
  'alakazam', 'tigger', 'htmlwidgets', 'gtable', 'rlang',
  'RColorBrewer', 'tidyr', 'stringi', 'splitstackshape', 'fastmatch'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'numbers', 'polynom', 'shiny', 'stringdist'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'asd', 'cubature', 'data.table', 'doParallel', 'foreach', 'ggplot2',
  'multcomp', 'multxpert'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'dplyr', 'httr2', 'pbapply', 'purrr', 'rappdirs', 'retry',
  'rlang', 'stringr', 'tidyr', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coop', 'FateID', 'FNN', 'fpc', 'ggplot2', 'ica', 'igraph', 'irlba',
  'locfit', 'matrixStats', 'pheatmap', 'propr', 'quadprog',
  'randomForest', 'Rcpp', 'RColorBrewer', 'Rtsne', 'umap', 'vegan'

Packages suggested but not available for checking:
  'batchelor', 'DESeq2', 'knitr', 'rmarkdown', 'SummarizedExperiment'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fasterize', 'plotwidgets', 'raster', 'rgdal', 'sf', 'Rcpp', 'comat',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'dplyr', 'pbapply', 'testthat', 'knitr', 'rmarkdown', 'RColorBrewer',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'matrixStats', 'rstudioapi', 'plotrix', 'maps', 'maptools', 'ncdf4',
  'rgdal', 'rgeos', 'sp', 'raster'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'pbapply', 'stringr', 'tidyr', 'cli', 'retry'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sfsmisc', 'scales'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'ggplot2'
Packages required but not available: 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyr', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'ggplot2', 'matrixStats', 'reshape2', 'lmerTest', 'e1071',
  'tidyr', 'stringr', 'dplyr', 'Hmisc', 'gridExtra', 'forestplot',
  'knitr', 'openxlsx', 'car'

Package suggested but not available for checking: 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Note: found 4 marked UTF-8 strings
Package suggested but not available for checking: 'radsafer'
Packages required but not available:
  'import', 'ggplot2', 'tidyr', 'dplyr', 'miniUI', 'shiny', 'shinyjs',
  'caret', 'rlang', 'shinyscreenshot'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'clValid'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'radiant.data', 'ggplot2', 'scales', 'dplyr', 'tidyr', 'magrittr',
  'shiny', 'psych', 'import', 'lubridate', 'polycor', 'patchwork'

Packages suggested but not available for checking:
  'testthat', 'pkgdown', 'markdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'ggplot2', 'lubridate', 'tidyr', 'dplyr', 'tibble',
  'rlang', 'broom', 'car', 'knitr', 'markdown', 'rmarkdown', 'shiny',
  'jsonlite', 'shinyAce', 'psych', 'DT', 'readr', 'readxl', 'writexl',
  'scales', 'curl', 'rstudioapi', 'import', 'plotly', 'glue',
  'shinyFiles', 'stringi', 'randomizr', 'patchwork', 'base64enc'

Packages suggested but not available for checking:
  'svglite', 'DBI', 'RSQLite', 'RPostgreSQL', 'odbc', 'webshot',
  'testthat', 'pkgdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'radiant.data', 'mvtnorm', 'dplyr', 'magrittr', 'shiny', 'AlgDesign',
  'import', 'pwr', 'randomizr', 'polycor'

Packages suggested but not available for checking: 'testthat', 'pkgdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'radiant.data', 'radiant.basics', 'shiny', 'NeuralNetTools',
  'sandwich', 'car', 'ggplot2', 'data.tree', 'stringr', 'lubridate',
  'tidyr', 'dplyr', 'rlang', 'magrittr', 'DiagrammeR', 'import',
  'psych', 'e1071', 'ggrepel', 'broom', 'patchwork', 'ranger',
  'xgboost', 'pdp', 'yaml'

Packages suggested but not available for checking: 'testthat', 'pkgdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'radiant.data', 'radiant.model', 'shiny', 'dplyr', 'rlang',
  'ggplot2', 'scales', 'magrittr', 'psych', 'GPArotation', 'car',
  'import', 'ggrepel', 'lubridate', 'polycor', 'gower', 'clustMixType',
  'patchwork'

Packages suggested but not available for checking: 'testthat', 'pkgdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'radiant.data', 'radiant.design', 'radiant.basics', 'radiant.model',
  'radiant.multivariate', 'shiny', 'import'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
getsonde: no visible global function definition for 'read.table'
plotsonde: no visible global function definition for 'par'
plotwind: no visible global function definition for 'mtext'
plotwind: no visible global function definition for 'abline'
skewt.axis: no visible global function definition for 'par'
skewt.axis: no visible global function definition for 'axis'
skewt.axis: no visible global function definition for 'mtext'
skewt.axis: no visible global function definition for 'segments'
skewt.axis: no visible global function definition for 'text'
skewt.axis: no visible global function definition for 'lines'
skewt.lines: no visible global function definition for 'lines'
skewt.points: no visible global function definition for 'points'
station.symbol: no visible global function definition for 'sd'
station.symbol: no visible global function definition for 'par'
station.symbol: no visible global function definition for 'lines'
station.symbol: no visible global function definition for 'polygon'
station.symbol: no visible global function definition for 'text'
station.symbol: no visible global function definition for 'segments'
Undefined global functions or variables:
  abline axis lines mtext par points polygon read.table sd segments
  text
Consider adding
  importFrom("graphics", "abline", "axis", "lines", "mtext", "par",
             "points", "polygon", "segments", "text")
  importFrom("stats", "sd")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Package required but not available: 'hermite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'lexicon', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quadprog', 'plyr', 'magrittr', 'MCMCpack'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgl', 'geometry', 'oro.dicom', 'ptinpoly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glue', 'httr', 'readr', 'checkmate', 'curl'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'readr', 'RadData', 'stringr', 'magrittr', 'dplyr',
  'rlang', 'scatterplot3d', 'ggthemes', 'qpdf', 'utf8'

Packages suggested but not available for checking:
  'testthat', 'beepr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vcfR', 'ggplot2', 'ggridges', 'gridExtra'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ReacTran', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'rlang', 'igraph', 'pracma', 'hexbin', 'Rcpp',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bodenmiller', 'tidyr', 'RColorBrewer',
  'cytofan', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'rjson'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lars', 'foreach', 'doParallel', 'glmnet', 'fastcmprsk'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RColorBrewer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'popdemo', 'DiagrammeR', 'Rcompadre'

Packages suggested but not available for checking:
  'spelling', 'ggplot2', 'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'systemfonts', 'textshaping'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'crosstalk', 'knitr'

Packages suggested but not available for checking:
  'jsonlite', 'rmarkdown', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'expm', 'reshape', 'ggplot2', 'Hmisc', 'fdrtool',
  'snowfall', 'sfsmisc', 'gRbase', 'RBGL', 'graph', 'Rcpp', 'RSpectra',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'KEGGgraph', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'rags2ridges', 'abind', 'expm', 'fdrtool', 'mvtnorm',
  'Biobase', 'CGHbase', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'limSolve', 'futile.logger'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'rmarkdown', 'reshape2', 'stringr',
  'ggplot2', 'RColorBrewer', 'BondValuation', 'R.cache', 'Quandl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pcaPP', 'hdrcde', 'colorspace', 'ks'

Package suggested but not available for checking: 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'pbmcapply', 'optimx', 'ape', 'stringr', 'pegas', 'rrBLUP',
  'expm', 'here', 'htmlwidgets', 'Rfast', 'gaston', 'MM4LMM',
  'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plotly', 'haplotypes', 'adegenet', 'ggplot2',
  'ggtree', 'scatterpie', 'phylobase', 'furrr', 'future', 'progressr',
  'foreach', 'doParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'popdemo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'purrr', 'ggplot2', 'stringr', 'quanteda',
  'quanteda.textstats', 'RSpectra', 'dendextend', 'ggwordcloud',
  'gridExtra', 'rlang', 'shiny', 'miniUI', 'highr', 'progressr', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tm', 'FNN', 'quanteda.textmodels',
  'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'dplyr', 'ggplot2', 'readr', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'doParallel', 'foreach'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'cowplot', 'reshape2', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ipfp', 'wrswoR'

Packages suggested but not available for checking: 'testthat', 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rvest', 'xml2', 'tidyr', 'dplyr', 'stringr', 'robotstxt', 'crayon',
  'curl', 'stringi'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'openxlsx', 'Hmisc', 'stringr', 'readr', 'stringi',
  'shiny', 'shinydashboard', 'DT', 'shinyjs', 'shinyFiles'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'rlist'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr', 'knitr', 'magrittr', 'purrr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'ggrepel', 'imputeTS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'sna'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'reactR', 'shiny', 'jsonlite',
  'lubridate', 'minpack.lm', 'base64enc', 'xml2', 'stringr'

Package suggested but not available for checking: 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'htmltools', 'data.table', 'pipeR', 'knitr', 'yaml',
  'zoo'

Packages suggested but not available for checking:
  'magrittr', 'shiny', 'testthat', 'shinydashboard', 'base64enc',
  'lubridate', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dynamicTreeCut', 'fastcluster', 'ff', 'InterpretMSSpectrum',
  'BiocManager', 'httr', 'jsonlite', 'preprocessCore', 'e1071',
  'gplots', 'pcaMethods', 'stringr', 'xml2', 'webchem', 'stringi',
  'RCurl', 'MSnbase', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'xcms'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'urltools', 'lubridate', 'dplyr', 'jsonlite', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'cli', 'crayon', 'httr', 'rappdirs', 'readxl'

Packages suggested but not available for checking:
  'covr', 'testthat', 'httptest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lavaan', 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'maps', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vegan', 'ggplot2', 'RColorBrewer', 'gplots', 'plyr', 'reshape2',
  'scales', 'labdsv', 'gridExtra', 'ggmap', 'permute', 'VennDiagram',
  'data.table', 'FD', 'RgoogleMaps', 'reshape', 'ade4', 'phangorn',
  'phytools', 'ape'

Packages suggested but not available for checking:
  'testthat', 'mapproj', 'gtable', 'indicspecies', 'Heatplus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'base64enc', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyverse', 'plotly', 'openxlsx',
  'DBI', 'RSQLite', 'reticulate'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available: 'tibble', 'httr', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'entropy', 'AUC', 'poweRlaw', 'RSpectra', 'irlba', 'pracma', 'nnls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'snowfall', 'orthopolynom', 'polynom', 'fourierin', 'sfsmisc',
  'tmvtnorm', 'rdetools', 'ks', 'statmod', 'RCEIM', 'robustbase',
  'VGAM'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/RandomCoefficients.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'colorspace', 'stringr', 'V8', 'scales', 'Rtsne'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'RandomFieldsUtils'

Packages suggested but not available for checking:
  'colorspace', 'RColorBrewer', 'mvtnorm', 'raster', 'tcltk2',
  'tkrplot', 'spam', 'minqa', 'soma', 'optimx', 'nloptr', 'pso',
  'GenSA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'spam', 'RandomFields'
Packages required but not available:
  'data.table', 'dplyr', 'DT', 'GGally', 'ggplot2', 'ggrepel',
  'randomForest', 'ranger', 'reshape2', 'rmarkdown'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RColorBrewer'
Packages required but not available:
  'BRISC', 'matrixStats', 'randomForest', 'pbapply'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.tree', 'DiagrammeR'

Packages suggested but not available for checking:
  'pec', 'prodlim', 'mlbench', 'akima', 'caret', 'imbalance'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'permute', 'matrixStats'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'plotrix'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/article.Rnw'
   'inst/doc/comparison-example.Rnw'
   'inst/doc/desirability-example.Rnw'
   'inst/doc/randomizeR-refCard.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'dplyr', 'testthat', 'rmarkdown', 'ri'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'fastGHQuad', 'Rfast', 'doParallel', 'doRNG', 'foreach'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crayon', 'data.table', 'toOrdinal'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'psych', 'nFactors', 'mvtnorm', 'sfsmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'doParallel', 'iterators', 'foreach', 'ggplot2', 'pROC',
  'gtools'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'knitr', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'dplyr', 'glue', 'rlang', 'tibble'

Packages suggested but not available for checking:
  'spelling', 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'caret', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'xml2', 'curl', 'httr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
bartels.rank.test: no visible global function definition for 'na.omit'
bartels.rank.test: no visible global function definition for 'pbeta'
bartels.rank.test: no visible global function definition for 'pnorm'
cox.stuart.test: no visible global function definition for 'pbinom'
difference.sign.test: no visible global function definition for
  'na.omit'
difference.sign.test: no visible global function definition for 'pnorm'
rank.test: no visible global function definition for 'na.omit'
rank.test: no visible global function definition for 'pnorm'
rruns: no visible global function definition for 'runif'
runs.test: no visible global function definition for 'median'
runs.test: no visible global function definition for 'na.omit'
runs.test: no visible global function definition for 'points'
runs.test: no visible global function definition for 'abline'
runs.test: no visible global function definition for 'gray'
runs.test: no visible global function definition for 'pnorm'
turning.point.test: no visible global function definition for 'embed'
turning.point.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  abline embed gray median na.omit pbeta pbinom pnorm points runif
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "abline", "points")
  importFrom("stats", "embed", "median", "na.omit", "pbeta", "pbinom",
             "pnorm", "runif")
to your NAMESPACE file.
Package required but not available: 'rngWELL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'distr', 'distrEx', 'startupmsg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'raster', 'rgdal', 'alphahull', 'stringi', 'rgeos', 'pbapply',
  'cleangeo', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glue', 'future', 'future.apply', 'progressr', 'sf', 'RSQLite',
  'DBI', 'magrittr', 'data.table', 'raster', 'exactextractr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'ggplot2', 'viridis', 'rmarkdown', 'pkgdown',
  'igraph', 'spdep'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'concaveman', 'dplyr', 'maps', 'maptools', 'rnaturalearthdata',
  'raster', 'rgdal', 'rgeos', 'rgl', 'scales', 'sf', 'sp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'jsonlite', 'raster', 'rgbif', 'rgdal', 'rgeos', 'shiny',
  'sp', 'spatstat', 'spocc', 'spThin'

Packages suggested but not available for checking:
  'BIEN', 'biomod2', 'dismo', 'ecospat', 'googlesheets', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jpeg', 'shiny', 'tidyverse'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'knitr'
Package required but not available: 'gtools'

Packages suggested but not available for checking:
  'xtable', 'kohonen', 'mclust', 'clValid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rdpack', 'coin', 'modeltools'

Packages suggested but not available for checking: 'testit', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'hash', 'optimx', 'permute'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coin', 'multcomp', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'rms'
Running examples in 'rankhazard-Ex.R' failed
The error most likely occurred in:

> ### Name: rankhazard-package
> ### Title: Rank-hazard plots
> ### Aliases: rankhazard-package rankhazard
> ### Keywords: package hplot survival
> 
> ### ** Examples
> 
> library(survival)
> model <- coxph(Surv(time,status) ~ age + sex + ph.karno, data = cancer, x=TRUE)
> rankhazardplot(model, data=cancer)
Y-axis range:  0.608 1.49 
 
Relative hazards for each covarite: 
          Min. 1st Qu. Median 3rd Qu. Max.
age      0.743   0.917      1    1.08 1.27
sex      0.608   0.608      1    1.00 1.00
ph.karno 0.766   0.875      1    1.07 1.49
> library(rms)
Error in library(rms) : there is no package called 'rms'
Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tikzDevice', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'
Malformed Description field: should contain one or more complete sentences.
rank.L2R: no visible global function definition for 'kmeans'
rank.L2R: no visible global function definition for 'pnorm'
rank.LN: no visible global function definition for 'kmeans'
rank.LN: no visible global function definition for 'pnorm'
rank.gs: no visible global function definition for 'qnorm'
rank.wald: no visible global function definition for 'qnorm'
Undefined global functions or variables:
  kmeans pnorm qnorm
Consider adding
  importFrom("stats", "kmeans", "pnorm", "qnorm")
to your NAMESPACE file.
Packages required but not available:
  'graph', 'RBGL', 'limma', 'NetPreProc', 'PerfMeas'

Package suggested but not available for checking: 'bionetdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'magrittr', 'cpp11'

Packages suggested but not available for checking: 'ggplot2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'DBI', 'devtools', 'digest', 'gistr', 'httr', 'knitr', 'magrittr',
  'readr', 'RJDBC', 'RMariaDB', 'sendmailR', 'shiny', 'yaml'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr', 'yaml'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'jsonlite'

Package suggested but not available for checking: 'plumber'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'RCurl', 'curl', 'dplyr', 'GenomicRanges', 'IRanges',
  'bigsnpr', 'coloc', 'bigreadr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'RANN', 'PBSmapping', 'RgoogleMaps'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'openNLPdata', 'slowraker'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'Biostrings', 'Rsamtools', 'GenomicRanges',
  'GenomicAlignments', 'PropCIs'

Package suggested but not available for checking: 'BSgenome.Hsapiens.UCSC.hg19'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'covr', 'withr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'plyr', 'pander', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'yaml', 'stringr', 'rapportools', 'pander'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'stringr', 'retry', 'dplyr', 'tidyr', 'lgr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
fnRAP: no visible global function definition for 'chisq.test'
fnRAP: no visible global function definition for 'combn'
Undefined global functions or variables:
  chisq.test combn
Consider adding
  importFrom("stats", "chisq.test")
  importFrom("utils", "combn")
to your NAMESPACE file.
Packages required but not available:
  'jsonlite', 'tibble', 'magrittr', 'tidyr', 'dplyr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Packages required but not available:
  'sp', 'raster', 'assertthat', 'PBSmapping', 'scales', 'shape',
  'adehabitatHR', 'RgoogleMaps', 'RandomFields', 'RColorBrewer',
  'plyr', 'doParallel', 'rgeos', 'rgdal', 'hypervolume', 'ks',
  'mvtnorm', 'ggplot2', 'Rcpp', 'RcppEigen', 'BH'

Packages suggested but not available for checking:
  'knitr', 'roxygen2', 'rmarkdown', 'dplyr', 'vegan', 'gurobi',
  'gridExtra', 'rgl', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'glue', 'httr', 'jsonlite', 'lubridate', 'magrittr',
  'purrr', 'stringr', 'tibble', 'rlang', 'lifecycle'

Packages suggested but not available for checking:
  'spelling', 'desc', 'devtools', 'goodpractice', 'keyring', 'knitr',
  'markdown', 'roxygen2', 'rmarkdown', 'testthat', 'usethis', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdpack', 'magrittr', 'dplyr', 'pracma', 'gsl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'arules', 'dplyr', 'pwr', 'stringr', 'tidyr', 'reshape2',
  'sqldf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ade4', 'adiv', 'ape', 'dplyr', 'geiger', 'vegan'

Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'phyloregion', 'picante', 'phytools',
  'raster', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'survey'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'dendextend', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'arm'
Package required but not available: 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RSpectra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'document', 'fritools', 'gert', 'highr', 'knitr',
  'reticulate'

Packages suggested but not available for checking:
  'devtools', 'pkgload', 'rasciidoc', 'rmarkdown', 'rprojroot',
  'RUnit', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'RSNNS', 'e1071', 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'doParallel', 'e1071', 'foreach', 'randomForest', 'ggplot2',
  'gridExtra', 'formatR', 'FNN', 'ranger', 'KernelKnn', 'ModelMetrics',
  'glmnet'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'DT', 'foreach', 'GGally', 'ggplot2',
  'histogram', 'kohonen', 'plotly', 'raster', 'rlang', 'scales',
  'shiny', 'stringdist', 'stringi', 'terra'

Packages suggested but not available for checking:
  'testthat', 'tinytest', 'doParallel', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'terra'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bcmaps', 'units'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'proxy', 'foreach', 'progress', 'svMisc', 'terra'

Packages suggested but not available for checking:
  'doParallel', 'knitr', 'rmarkdown', 'rasterVis', 'RColorBrewer',
  'gridExtra', 'gstat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'data.table', 'fasterize', 'sf'

Packages suggested but not available for checking: 'rasterVis', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'raster'

Packages suggested but not available for checking:
  'lmom', 'testthat', 'sp', 'soilwater'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'data.table', 'rlang', 'plotly', 'ggplot2', 'magrittr'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown', 'lubridate'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'png'

Packages suggested but not available for checking:
  'covr', 'lintr', 'pkgdown', 'ragg', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'png', 'sf', 'terra'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'Rcpp', 'terra'

Packages suggested but not available for checking:
  'rgdal', 'rgeos', 'ncdf4', 'igraph', 'rasterVis', 'sf', 'tinytest',
  'gstat', 'fields', 'exactextractr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'terra', 'latticeExtra', 'RColorBrewer', 'hexbin', 'sp',
  'zoo', 'viridisLite'

Packages suggested but not available for checking:
  'rgl', 'ggplot2', 'colorspace', 'dichromat', 'sf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'glpkAPI', 'lpSolveAPI', 'Rirt', 'reshape2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'assertthat'

Packages suggested but not available for checking:
  'testthat', 'microbenchmark', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'geiger', 'coda', 'corpcor', 'phylolm', 'readr', 'mvMORPH',
  'Rcpp', 'ellipse', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'phytools', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
rateratio.test: no visible global function definition for
  'complete.cases'
rateratio.test: no visible global function definition for 'pbinom'
rateratio.test : p.L: no visible global function definition for 'qbeta'
rateratio.test : p.U: no visible global function definition for 'qbeta'
Undefined global functions or variables:
  complete.cases pbinom qbeta
Consider adding
  importFrom("stats", "complete.cases", "pbinom", "qbeta")
to your NAMESPACE file.
Packages required but not available:
  'ggplot2', 'loo', 'Rcpp', 'RcppParallel', 'rlang', 'rstan',
  'rstantools', 'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'coda', 'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
concordance: no visible global function definition for 'quantile'
concordance : Normal: no visible global function definition for 'qnorm'
concordance : Normal: no visible global function definition for 'pnorm'
concordance : MC: no visible global function definition for 'rmultinom'
concordance : MC: no visible global function definition for 'quantile'
concordance: no visible global function definition for 'qnorm'
concordance: no visible global function definition for 'pnorm'
concordance : Chisq: no visible global function definition for 'qchisq'
concordance : Chisq: no visible global function definition for 'pchisq'
concordance : Normal2: no visible global function definition for
  'qnorm'
concordance : Normal2: no visible global function definition for
  'pnorm'
concordance : MC2: no visible global function definition for
  'rmultinom'
concordance : MC2: no visible global function definition for 'quantile'
wlin.conc: no visible global function definition for 'quantile'
wlin.conc : MC: no visible global function definition for 'rmultinom'
wlin.conc : MC: no visible global function definition for 'quantile'
wquad.conc: no visible global function definition for 'quantile'
wquad.conc : MC: no visible global function definition for 'rmultinom'
wquad.conc : MC: no visible global function definition for 'quantile'
Undefined global functions or variables:
  pchisq pnorm qchisq qnorm quantile rmultinom
Consider adding
  importFrom("stats", "pchisq", "pnorm", "qchisq", "qnorm", "quantile",
             "rmultinom")
to your NAMESPACE file.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'gridExtra', 'quantreg'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/RDperm.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'DBI', 'reticulate', 'uuid'

Packages suggested but not available for checking:
  'arrow', 'bit64', 'dplyr', 'dbplyr', 'testthat', 'tibble', 'vroom',
  'covr', 'knitr', 'rmarkdown', 'jsonify', 'jsonlite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pROC', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'snowfall'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/RationalExp.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'polynom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'mapproj', 'wosr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'crul', 'curl', 'dplyr', 'fauxpas', 'fs', 'hoardr',
  'janitor', 'magrittr', 'purrr', 'rlang', 'rlist', 'tibble',
  'tidyjson', 'tidyr'

Packages suggested but not available for checking:
  'vcr', 'testthat', 'knitr', 'rmarkdown', 'webmockr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'bitops', 'ggplot2', 'magrittr', 'stringi', 'stringr',
  'tidyr', 'dplyr', 'XML', 'rpart.plot'

Packages suggested but not available for checking:
  'pmml', 'colorspace', 'ada', 'amap', 'arules', 'arulesViz',
  'biclust', 'cairoDevice', 'cba', 'corrplot', 'descr', 'doBy',
  'e1071', 'ellipse', 'fBasics', 'fpc', 'gdata', 'ggdendro', 'gplots',
  'gridExtra', 'gtools', 'Hmisc', 'janitor', 'kernlab', 'mice',
  'party', 'plyr', 'psych', 'RGtk2', 'randomForest', 'RColorBrewer',
  'readxl', 'reshape', 'ROCR', 'RODBC', 'scales', 'SnowballC',
  'timeDate', 'tm', 'xgboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'gaston', 'mlogit', 'Formula', 'dfidx',
  'bedr', 'curl', 'RcppEigen', 'BH'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'edfReader', 'dipsaus', 'filearray', 'fst', 'glue',
  'hdf5r', 'ini', 'jsonlite', 'R.matlab', 'R6', 'stringr', 'yaml',
  'targets', 'callr', 'remotes', 'threeBrain'

Packages suggested but not available for checking:
  'testthat', 'reticulate', 'knitr', 'rmarkdown', 'bs4Dash',
  'clustermq', 'shiny', 'shinybusy', 'visNetwork', 'shinyWidgets',
  'arrow'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'tibble', 'purrr', 'tidyr'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'colorspace', 'cowplot', 'DiagrammeR', 'dplyr', 'dygraphs', 'gdata',
  'ggplot2', 'igraph', 'lubridate', 'magrittr', 'purrr', 'Rcpp',
  'RCurl', 'scales', 'stringr', 'tidyr', 'visNetwork', 'xts', 'zoo'

Packages suggested but not available for checking:
  'devtools', 'DiagrammeRsvg', 'knitr', 'rmarkdown', 'rsvg'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'filearray', 'Rcpp', 'waveslim', 'signal', 'digest'

Packages suggested but not available for checking:
  'fftwtools', 'pracma', 'microbenchmark', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'XML', 'RCurl', 'scrapeR', 'gdata', 'scales', 'rgdal',
  'maptools', 'raster', 'sp'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinydashboard', 'shinydashboardPlus', 'shinyFiles',
  'shinyMatrix', 'shinyvalidate', 'shinycustomloader', 'RaMS',
  'data.table', 'purrr', 'dplyr', 'plotly', 'RColorBrewer',
  'rmarkdown', 'markdown', 'kableExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'ROCR', 'ggplot2', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'actuar', 'ChainLadder', 'dplyr', 'devtools', 'FinCal',
  'fitdistrplus', 'forcats', 'ggplot2', 'insuranceData', 'knitr',
  'Lahman', 'lubridate', 'maps', 'mondate', 'nycflights13', 'purrr',
  'randomForest', 'randomNames', 'readr', 'readxl', 'RColorBrewer',
  'rmarkdown', 'scales', 'stringr', 'tibble', 'tidyr', 'tweedie', 'XML'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'stringr', 'tibble', 'withr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'png', 'magrittr', 'jpeg', 'RcppArmadillo', 'progress'

Packages suggested but not available for checking: 'magick', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rayrender', 'magrittr', 'PeriodicTable', 'httr', 'rayvertex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'tibble', 'magrittr', 'purrr', 'png', 'raster', 'decido',
  'rayimage', 'progress', 'RcppThread', 'spacefillr'

Packages suggested but not available for checking:
  'sf', 'spData', 'dplyr', 'Rvcg', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'foreach', 'Rcpp', 'progress', 'raster', 'scales',
  'png', 'magrittr', 'rgl', 'terrainmeshr', 'rayimage', 'RcppArmadillo'

Packages suggested but not available for checking:
  'reshape2', 'viridis', 'av', 'magick', 'ggplot2', 'sf', 'rayrender',
  'isoband', 'maptools', 'geosphere'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ncdf4', 'sf', 'units'

Packages suggested but not available for checking:
  'testthat', 'covr', 'lwgeom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'Rcpp', 'rayimage', 'png', 'digest', 'spacefillr',
  'RcppThread'

Packages suggested but not available for checking:
  'Rvcg', 'magick', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crul', 'xml2', 'data.table', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'vcr', 'webmockr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'IntCal', 'coda', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'utf8'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'RCurl', 'pingr', 'rex', 'httr', 'stringr', 'dplyr', 'openssl',
  'magrittr', 'tibble', 'data.table'

Packages suggested but not available for checking: 'testthat', 'glue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'magrittr', 'foreach', 'GPfit'

Package suggested but not available for checking: 'xgboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'tibble', 'xts', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'miniUI', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gmp', 'httr', 'openssl', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'pkgload', 'rmarkdown', 'RUnit', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'runit.R'
Running the tests in 'tests/runit.R' failed.
Complete output:
  > #!/usr/bin/Rscript --vanilla
  > is_failure <- function(result) {
  +   res <- RUnit::getErrors(result)
  +   names(res) <- tolower(names(res)) # soothe lintr
  +   sum_of_exceptions <- res[["nerr"]] + res[["nfail"]]
  +   fail <- as.logical(sum_of_exceptions)
  +   return(fail)
  + }
  > 
  > if (interactive()) {
  +   pkgload::load_all(path = ".") # needed to use pkgload's shim version of
  +   # base's system.file
  +   unit_dir <- system.file("inst", "runit_tests", package = "rBDAT")
  + } else {
  +   require("rBDAT", quietly = TRUE, character.only = TRUE) ||
  +     pkgload::load_all(path = ".") # needed to use pkgload's shim version of
  +   r_call <- commandArgs(trailingOnly = FALSE)
  +   if (any(grepl("--file", r_call))) {
  +     unit_dir <- file.path("inst", "runit_tests")
  +   } else {
  +     unit_dir <- system.file("runit_tests", package = "rBDAT")
  +   }
  + }
  This is rBDAT 0.9.8
  > if (!dir.exists(unit_dir)) {
  +   stop(
  +     "Can not find RUnit test directory ", unit_dir,
  +     ". Try to (re)install the package first."
  +   )
  + }
  > setup_file <- file.path(unit_dir, "setup.R")
  > if (file.exists(setup_file)) source(setup_file)
  > package_suite <- RUnit::defineTestSuite("rBDAT_unit_test",
  +   dirs = unit_dir,
  +   testFileRegexp = "^runit.*\\.[rR]",
  +   testFuncRegexp = "^test_+"
  + )
  Error in loadNamespace(x) : there is no package called 'RUnit'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available:
  'tibble', 'R6', 'stringr', 'bit64', 'rappdirs', 'rlang', 'dplyr',
  'purrr', 'magrittr', 'readr', 'digest', 'vctrs', 'tidyr', 'fs'

Packages suggested but not available for checking:
  'zip', 'testthat', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'RCurl', 'rjson', 'wordcloud', 'rtematres', 'RColorBrewer'

Packages suggested but not available for checking: 'ggplot2', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rfit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'magrittr', 'tidyr', 'purrr', 'lme4', 'forcats',
  'sf', 'lubridate', 'rlang', 'stringr'

Packages suggested but not available for checking:
  'ggmap', 'knitr', 'glue', 'rmarkdown', 'testthat', 'tidygraph',
  'lwgeom'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'assertthat',
  'mvtnorm', 'Formula', 'checkmate', 'bayesplot', 'ggplot2', 'dplyr',
  'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat', 'foreach', 'purrr', 'rstanarm',
  'scales', 'broom', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'MCMCpack', 'gtools'
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gam', 'RobStatTM'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'raster', 'sp', 'dplyr', 'geosphere', 'rlang', 'reproj', 'sfheaders'

Packages suggested but not available for checking:
  'bgmfiles', 'covr', 'knitr', 'rmarkdown', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'imager', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'xml2', 'jsonlite', 'plyr', 'tibble'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'future', 'future.apply', 'ggplot2', 'magrittr',
  'nls2', 'polynom'

Packages suggested but not available for checking:
  'ggpubr', 'knitr', 'lintr', 'microbenchmark', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Packages required but not available:
  'rbi', 'data.table', 'lubridate', 'reshape2'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'covr', 'stringi'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'knitr', 'miniUI', 'rmarkdown', 'rstudioapi', 'shiny',
  'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'rstan', 'rstantools', 'ggmcmc', 'GGally', 'loo',
  'stringr', 'zoo', 'BH', 'RcppEigen', 'RcppParallel', 'StanHeaders'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'DT', 'knitr', 'png', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'plyr', 'Rcpp', 'RcppParallel', 'rjson', 'rlang',
  'R.utils', 'slam', 'openxlsx'

Packages suggested but not available for checking:
  'ape', 'reshape2', 'rhdf5', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'RJSONIO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ncdf4', 'processx', 'reshape2'

Packages suggested but not available for checking:
  'coda', 'covr', 'R.rsp', 'stringi', 'testthat', 'ggplot2', 'markdown'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'crul', 'ggplot2', 'mapproj', 'sp', 'dplyr', 'jsonlite',
  'data.table', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'taxize', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RJSONIO', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'RCurl', 'digest', 'RJSONIO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'getPass', 'httr', 'jsonlite', 'png', 'RCurl'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R6'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'xts'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bnlearn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'fts', 'xts', 'zoo', 'data.table', 'simplermarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'simplermarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'hdf5r', 'data.table', 'xts', 'dygraphs', 'shiny'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'R6', 'assertthat',
  'glmmTMB', 'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'dplyr', 'covr', 'tidyr', 'testthat', 'emmeans', 'tibble', 'mvtnorm',
  'knitr', 'rmarkdown', 'bookdown', 'lubridate', 'purrr', 'ggplot2',
  'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'bnlearn', 'igraph'
Packages required but not available:
  'data.table', 'httr', 'rjson', 'ggplot2', 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'lubridate', 'readxl', 'rvest', 'xml2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'maps', 'jsonlite', 'digest', 'hexbin', 'lazyeval',
  'pryr', 'magrittr', 'scales', 'gistr'

Packages suggested but not available for checking:
  'testthat', 'data.table', 'lintr', 'roxygen2', 'latticeExtra',
  'knitr', 'rmarkdown', 'markdown'

Package which this enhances but not available for checking: 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'earth', 'Hmisc'

Packages suggested but not available for checking:
  'knitr', 'imbalance', 'rmarkdown', 'mlbench'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'data.table', 'digest'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mlr', 'BBmisc', 'checkmate', 'shape', 'TeachingDemos'

Packages suggested but not available for checking: 'testthat', 'mlbench'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'dplyr', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjson', 'httr', 'openssl', 'gmp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mice', 'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'devtools'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang'

Packages suggested but not available for checking:
  'ebal', 'knitr', 'survey', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.methodsS3', 'R.oo', 'R.utils', 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ff', 'ClustGeo', 'fields', 'ggplot2', 'pracma', 'raster', 'rgeos',
  'sp', 'gridExtra', 'rlang', 'sf', 'LaplacesDemon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'magrittr', 'testthat', 'pracma', 'Rdpack', 'sp',
  'colorspace', 'rgdal'

Packages suggested but not available for checking:
  'autothresholdr', 'conicfit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'splancs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'trust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'data.table', 'ggplot2', 'scales'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'rgdal'

Packages suggested but not available for checking: 'prettymapr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'spatstat.geom', 'spatstat.core', 'spatstat.linnet',
  'spatstat', 'snow', 'doSNOW', 'foreach', 'iterators', 'knitr'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'interp', 'matrixStats'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'covr', 'testthat', 'vdiffr', 'sf', 'spData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  cass.c:153:17: warning: pointer targets in passing argument 2 of 'send' differ in signedness [-Wpointer-sign]
  cass.c:210:21: warning: pointer targets in passing argument 2 of 'recv' differ in signedness [-Wpointer-sign]
See 'C:/r_packages/pkgcheck/CRAN/RCassandra/RCassandra.Rcheck/00install.out' for details.
RC.read.table: no visible global function definition for 'type.convert'
Undefined global functions or variables:
  type.convert
Consider adding
  importFrom("utils", "type.convert")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'rgdal', 'sp'

Packages suggested but not available for checking:
  'rgeos', 'rgbif', 'knitr', 'rmarkdown', 'R.rsp', 'testthat',
  'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'rlemon'

Packages suggested but not available for checking:
  'optmatch', 'testthat', 'rrelaxiv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rJava', 'arules', 'R.utils', 'TunePareto'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'Rdpack', 'dplyr',
  'rlang', 'tibble', 'tidybayes', 'magrittr', 'shiny', 'shinythemes',
  'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rmosek', 'REBayes', 'orthopolynom', 'Formula', 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'rcbalance', 'rlemon'

Packages suggested but not available for checking:
  'testthat', 'rrelaxiv', 'optmatch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rccmisc'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

Packages suggested but not available for checking:
  'checkpoint', 'testthat', 'R.rsp', 'rvest', 'xml2'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'redcapAPI', 'getPass', 'yaml', 'keyring'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'np', 'Benchmarking'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rcdklibs', 'fingerprint', 'rJava', 'png', 'iterators', 'itertools'

Packages suggested but not available for checking:
  'xtable', 'RUnit', 'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'randomcoloR', 'gplots', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'uniformly'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'Rcpp', 'git2r', 'httr', 'testthat', 'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'data.table', 'igraph', 'sqldf', 'visNetwork'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'ncdf4', 'raster', 'sp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rmarkdown', 'knitr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'V8', 'R6', 'ggplot2', 'plyr', 'dplyr', 'assertthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rdpack', 'reticulate'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'V8', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'covr', 'googledrive', 'curl', 'httpuv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'maptools', 'raster', 'readr', 'rgeos', 'ncdf4', 'pracma',
  'dygraphs', 'xts', 'maps', 'mapdata', 'oceanmap', 'sp', 'PBSmapping'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'maxLik', 'sandwich', 'miscTools', 'numDeriv', 'memisc',
  'msm', 'plm', 'plotrix'

Packages suggested but not available for checking: 'car', 'lmtest', 'pglm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'hdrcde'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'cli', 'curl', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'tibble', 'rmarkdown', 'rworldmap', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'crul', 'fauxpas', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'Hmisc', 'magrittr', 'purrr'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rmarkdown', 'spelling', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'dbplyr', 'DBI', 'Rcpp', 'bit64'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'stringr', 'tibble', 'httr', 'lubridate',
  'rlang', 'tidyr', 'assertthat', 'tidyselect'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'RCurl', 'XML', 'rjson', 'tm'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tcltk2', 'tkrplot', 'conclust', 'corrplot', 'e1071', 'factoextra',
  'FactoMineR', 'ggplot2', 'jpeg', 'mclust', 'mda', 'mmand', 'png',
  'randomForest', 'reshape', 'sp', 'stringi', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'rJava'
cmaOptimDP: no visible global function definition for 'flush.console'
Undefined global functions or variables:
  flush.console
Consider adding
  importFrom("utils", "flush.console")
to your NAMESPACE file.
Running examples in 'rCMA-Ex.R' failed
The error most likely occurred in:

> ### Name: cmaCalcFitness
> ### Title: Calculate the fitness of a population.
> ### Aliases: cmaCalcFitness
> 
> ### ** Examples
> 
> cma <- cmaNew();
Error in loadNamespace(x) : there is no package called 'rJava'
Calls: cmaNew ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available:
  'callr', 'cli', 'curl', 'desc', 'digest', 'pkgbuild', 'prettyunits',
  'R6', 'rprojroot', 'sessioninfo', 'withr', 'xopen'

Packages suggested but not available for checking:
  'covr', 'knitr', 'mockery', 'processx', 'ps', 'rmarkdown', 'svglite',
  'testthat', 'webfakes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'sandwich', 'abind', 'colorspace', 'Hmisc', 'e1071', 'haven',
  'readstata13', 'readxl', 'nortest'

Package suggested but not available for checking: 'carData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcmdr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'biclust', 'fabia', 'iBBiG', 'superbiclust', 'BcDiag', 'BicARE',
  's4vd', 'BiBitR', 'Rcmdr', 'gplots', 'viridis'

Packages suggested but not available for checking:
  'knitr', 'rqubic', 'BiocManager'

VignetteBuilder package required for checking but not installed: 'knitr'

Depends: includes the non-default packages:
  'biclust', 'fabia', 'iBBiG', 'superbiclust', 'BcDiag', 'BicARE',
  's4vd', 'BiBitR'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/GuideBiclustGUI.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crossdes', 'support.BWS', 'support.CEs', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'coin', 'multcomp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DCchoice', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'support.CEs', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'depthTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DoE.base', 'FrF2', 'DoE.wrapper', 'relimp', 'Rcmdr', 'RcmdrMisc'

Package suggested but not available for checking: 'FrF2.catlg128'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R2HTML', 'abind', 'ez', 'nortest', 'reshape', 'Rcmdr', 'RcmdrMisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'epiR', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'EcoVirtual'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'xtable', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'readstata13'

Packages suggested but not available for checking:
  'abind', 'aod', 'aplpack', 'brant', 'car', 'clinfun', 'cmprsk',
  'ggplot2', 'lawstat', 'meta', 'metatest', 'netmeta', 'multcomp',
  'mvtnorm', 'Matching', 'pROC', 'survivalROC', 'survRM2', 'tableone',
  'readxl', 'lmerTest', 'swimplot', 'currentSurvival'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FactoMineR', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GWRM', 'RcmdrMisc', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'HH', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcmdr'

Packages suggested but not available for checking:
  'abind', 'car', 'distr', 'distrEx', 'e1071', 'effects', 'lmtest',
  'multcomp', 'qcc', 'relimp', 'RODBC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcmdr', 'ggplot2', 'ggthemes', 'plyr', 'RColorBrewer', 'scales',
  'tcltk2'

Packages suggested but not available for checking:
  'extrafont', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lfstat', 'Rcmdr'

Packages suggested but not available for checking: 'testthat', 'lmomRFA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'MAd', 'metafor'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'compute.es', 'ggplot2', 'gridExtra', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'ordinal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mixlm', 'pls', 'xtable', 'phia', 'Rcmdr', 'car'

Packages suggested but not available for checking:
  'lme4', 'leaps', 'mvtnorm', 'gmodels', 'abind', 'pbkrtest', 'vcd',
  'multcomp', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'orloca', 'orloca.es', 'Rcmdr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rrcov', 'tkrplot', 'Rcmdr', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'RColorBrewer'

Packages suggested but not available for checking:
  'YaleToolkit', 'qgraph', 'maps', 'ade4', 'effects', 'abind', 'vcd',
  'car', 'gpairs', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcmdr', 'demography', 'forecast', 'ftsa', 'ggplot2', 'dplyr',
  'scales', 'zoo', 'data.table'

Packages suggested but not available for checking: 'tkrplot', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcmdr', 'runjags', 'rmeta', 'igraph', 'coda', 'rjags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcmdr', 'ROCR', 'pROC', 'ResourceSelection'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'sampling', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SCVA', 'SCRT', 'SCMA', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SLC', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sos', 'Rcmdr', 'tcltk2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'steepness'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'date', 'Rcmdr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcmdr', 'sutteForecastR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'TeachingDemos', 'Rcmdr'

Packages suggested but not available for checking: 'rgl', 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcmdr', 'Hmisc', 'tcltk2', 'randtests', 'tseries', 'IndexNumR',
  'lme4', 'distr', 'distrEx'

Package suggested but not available for checking: 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tm', 'NLP', 'slam', 'zoo', 'Rcmdr', 'tcltk2', 'ca', 'R2HTML',
  'RColorBrewer', 'latticeExtra', 'stringi'

Packages suggested but not available for checking:
  'SnowballC', 'ROpenOffice', 'RODBC', 'tm.plugin.factiva',
  'tm.plugin.lexisnexis', 'tm.plugin.europresse', 'tm.plugin.alceste',
  'twitteR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'IQCC', 'qcc', 'qicharts2', 'randtests', 'rmarkdown',
  'TeachingDemos', 'tseries', 'Rcmdr'

Packages suggested but not available for checking:
  'car', 'carData', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Depends: includes the non-default packages:
  'IQCC', 'qcc', 'qicharts2', 'randtests', 'rmarkdown',
  'TeachingDemos', 'tseries'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'WorldFlora', 'Rcmdr'

Packages suggested but not available for checking: 'data.table', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RcmdrMisc', 'car', 'effects', 'tcltk2', 'abind', 'relimp', 'lme4'

Packages suggested but not available for checking:
  'aplpack', 'colorspace', 'e1071', 'Hmisc', 'knitr', 'leaps',
  'lmtest', 'markdown', 'multcomp', 'nortest', 'readxl', 'rgl',
  'rmarkdown', 'sem'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'dplyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
brewer.pal: no visible global function definition for 'rgb'
display.brewer.all: no visible global function definition for 'par'
display.brewer.all: no visible global function definition for 'rect'
display.brewer.all: no visible global function definition for 'text'
display.brewer.pal: no visible global function definition for 'image'
Undefined global functions or variables:
  image par rect rgb text
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "image", "par", "rect", "text")
to your NAMESPACE file.
Package required but not available: 'magrittr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'popdemo', 'tibble'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'knitr', 'maps', 'rcrossref',
  'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DescTools', 'multcompView', 'plyr', 'coin', 'lmtest', 'nortest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clisymbols', 'crayon', 'devtools', 'gert', 'gh', 'gtools',
  'rmarkdown', 'rstudioapi', 'stringr', 'usethis', 'xfun'

Packages suggested but not available for checking:
  'fs', 'knitr', 'remotes', 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'yaml', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'conics'
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'diffr', 'ggplot2', 'httr', 'knitr', 'markdown',
  'microbenchmark', 'rmarkdown', 'rstudioapi', 'rvest', 'shiny',
  'shinythemes', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'crul', 'jsonlite', 'pdftools', 'hoardr'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'knitr', 'rmarkdown', 'rcrossref', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FITSio', 'Rcpp', 'mmap', 'tibble', 'rgl', 'cli', 'entropy', 'geoR',
  'nnls'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'R.rsp', 'gsl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'beepr', 'car', 'descr', 'haven', 'Hmisc', 'knitr', 'lmtest',
  'survey', 'weights'

Packages suggested but not available for checking:
  'hexbin', 'rgl', 'scatterplot3d', 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gtools', 'glmnet', 'fishMod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gmp'

Packages suggested but not available for checking:
  'testthat', 'numbers', 'partitions', 'microbenchmark', 'knitr',
  'RcppBigIntAlgos', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'simplermarkdown'

VignetteBuilder package required for checking but not installed: 'simplermarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'tinytest', 'pkgKitten', 'reticulate', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gmp', 'Rcpp', 'RcppThread'

Packages suggested but not available for checking:
  'testthat', 'numbers', 'RcppAlgos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'MomTrunc', 'mvtnorm', 'Rcpp', 'Rdpack',
  'tlrmvnmvt', 'RcppArmadillo', 'RcppProgress', 'roptim'

Packages suggested but not available for checking:
  'CensSpatial', 'relliptical', 'StempCens'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppClassic'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'ggplot2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'reticulate', 'pinp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'fs'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'Rcpp'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'inline', 'DEoptim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'wrapr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'tinytest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppEigen', 'functional', 'memoise', 'readr', 'Rdpack', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'inline', 'tinytest', 'pkgKitten', 'microbenchmark'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'knitr'

Package suggested but not available for checking: 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'bit64'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppParallel', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'nloptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc', 'mvtnorm', 'RcppEigen'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'Rcpp', 'RUnit', 'knitr', 'rmarkdown'
Package unavailable to check Rd xrefs: 'Rcpp'
GNU make is a SystemRequirements.
Running 'doRUnit.R'
Running the tests in 'tests/doRUnit.R' failed.
Complete output:
  > stopifnot(require(RUnit, quietly = TRUE))
  Error: require(RUnit, quietly = TRUE) is not TRUE
  Execution halted
Packages suggested but not available for checking:
  'RcppArmadillo', 'devtools', 'roxygen2', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'tinytest', 'inline', 'rbenchmark', 'pkgKitten'
Package unavailable to check Rd xrefs: 'inline'
Packages required but not available: 'Rcpp', 'RApiSerialize'

Packages suggested but not available for checking:
  'RcppMsgPack', 'rredis', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'zoo', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'bit64', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'simplermarkdown'

VignetteBuilder package required for checking but not installed: 'simplermarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'Rcpp'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking:
  'tinytest', 'uuid', 'microbenchmark'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'xts'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppGSL'

Packages suggested but not available for checking:
  'rbenchmark', 'microbenchmark', 'knitr', 'rmarkdown', 'pinp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'xml2', 'data.table', 'foreach', 'doParallel', 'selectr',
  'webdriver', 'callr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sandwich'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forecast', 'ggmap', 'htmltools', 'igraph', 'leaflet',
  'leafsync', 'lubridate', 'pals', 'raster', 'Rcpp', 'rgdal', 'sp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'XML', 'httr', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'truncnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'crul', 'xml2', 'plyr', 'dplyr', 'tibble', 'R6', 'shiny',
  'miniUI', 'stringr', 'DT'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'knitr', 'rmarkdown', 'vcr', 'bibtex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/Rcssplot.Rnw'
(Is a VignetteBuilder field missing?)
'LazyData' is specified without a 'data' directory
Files named as vignettes but with no recognized vignette engine:
   'vignettes/Rcssplot.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available:
  'dplyr', 'purrr', 'glue', 'rlang', 'tidyr', 'stringr', 'pracma',
  'lfe', 'broom', 'forcats', 'magrittr', 'ggplot2', 'tidyselect'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bitops'

Package suggested but not available for checking: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tibble', 'magrittr', 'tidyselect', 'tidyr', 'purrr',
  'rlang', 'stringr', 'ggplot2', 'Rdpack'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tcpl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rjson'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'Mercator'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'curl', 'httr', 'jsonlite', 'magrittr'

Packages suggested but not available for checking:
  'raster', 'readxl', 'units', 'ggplot2', 'stringr', 'rvest', 'xml2',
  'scales', 'knitr', 'testthat', 'roxygen2', 'devtools', 'rmarkdown',
  'dplyr', 'lwgeom', 's2', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'roxygen2', 'xfun', 'formatR'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

Package suggested but not available for checking: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'vegan', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'crul', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'webmockr', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'cli', 'configr', 'dplyr', 'git2r', 'httr', 'jsonlite',
  'openssl', 'R6', 'rhdf5', 'semver', 'usethis', 'yaml'

Packages suggested but not available for checking: 'units', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'data.table', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'minpack.lm', 'Rdpack', 'dplyr', 'magrittr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'tibble', 'ggplot2', 'ggpubr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'AER', 'sandwich', 'lmtest', 'Formula', 'shiny', 'R.utils', 'plot3D',
  'sp', 'DT'

Packages suggested but not available for checking:
  'devtools', 'testthat', 'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'lpdensity'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sandwich', 'lmtest', 'AER', 'Formula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'AER', 'np', 'ggplot2', 'rdd', 'sandwich', 'lmtest', 'Formula',
  'locpol', 'rdrobust', 'rmarkdown'

Packages suggested but not available for checking:
  'car', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'slam', 'truncreg', 'truncnorm', 'maxLik'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'rlang'

Packages suggested but not available for checking:
  'covr', 'knitr', 'pander', 'rmarkdown', 'testthat', 'utf8'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'clipr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'lintr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
distimage: no visible binding for global variable 'terrain.colors'
distimage: no visible global function definition for 'filled.contour'
distimage: no visible global function definition for 'title'
distimage: no visible global function definition for 'axis'
distimage: no visible global function definition for 'lines'
drawkpc: no visible global function definition for 'segments'
drawkpc: no visible global function definition for 'lines'
modelimage: no visible binding for global variable 'topo.colors'
modelimage: no visible global function definition for 'filled.contour'
modelimage: no visible global function definition for 'title'
modelimage: no visible global function definition for 'axis'
modelimage: no visible global function definition for 'lines'
sincdata: no visible global function definition for 'runif'
sincdata: no visible global function definition for 'rnorm'
Undefined global functions or variables:
  axis filled.contour lines rnorm runif segments terrain.colors title
  topo.colors
Consider adding
  importFrom("grDevices", "terrain.colors", "topo.colors")
  importFrom("graphics", "axis", "filled.contour", "lines", "segments",
             "title")
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Packages required but not available:
  'R.methodsS3', 'R.oo', 'R.utils', 'base64enc'

Packages suggested but not available for checking:
  'digest', 'Cairo', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'redland', 'jsonld', 'stringi', 'readr', 'dplyr', 'tidyr'

Packages suggested but not available for checking:
  'magrittr', 'covr', 'testthat', 'knitr', 'rmarkdown', 'jqr', 'DT',
  'tibble', 'purrr', 'lubridate', 'httr', 'xml2', 'jsonlite',
  'repurrrsive', 'nycflights13', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'curl', 'plyr', 'XML', 'dplyr', 'xml2', 'readr',
  'data.table', 'purrr', 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'here'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'brio', 'R6', 'httr', 'jsonlite', 'magrittr', 'rappdirs', 'digest',
  'storr', 'xml2', 'qdapRegex', 'rgdal', 'getPass', 'haven', 'iotools'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'survey', 'data.table',
  'microbenchmark', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'bit64'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'curl'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'descr'
sumry_categorical: no visible global function definition for 'freq'
sumry_continous: no visible global function definition for 'quantile'
Undefined global functions or variables:
  freq quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Running examples in 'RDIDQ-Ex.R' failed
The error most likely occurred in:

> ### Name: sumry_categorical
> ### Title: Summary of categorical variable
> ### Aliases: sumry_categorical
> 
> ### ** Examples
> 
> library(descr)
Error in library(descr) : there is no package called 'descr'
Execution halted
Packages required but not available:
  'CVXR', 'RANN', 'Rcpp', 'RcppDE', 'Rcsdp', 'Rdpack', 'RSpectra',
  'maotai', 'mclustcomp', 'RcppArmadillo', 'RcppDist'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'beanplot', 'gplots', 'pdist', 'stringr'

Packages suggested but not available for checking: 'knitr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'binaryLogic', 'reshape2'

Packages suggested but not available for checking:
  'ape', 'testthat', 'knitr', 'rmarkdown', 'covr', 'vcfR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'AER', 'sandwich'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'data.table', 'pipeR', 'readxl', 'rlist', 'R6',
  'stringr', 'xml2', 'lubridate'

Packages suggested but not available for checking:
  'chipPCR', 'magrittr', 'reshape2', 'qpcR', 'dplyr', 'ggplot2',
  'knitr', 'kfigr', 'MBmca', 'shiny', 'shinyjs', 'shinythemes',
  'shinyMolBio', 'V8', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'rdrobust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'Biostrings', 'GOSemSim', 'foreach', 'doParallel', 'RCurl',
  'org.Hs.eg.db'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'brew', 'httr', 'stringr', 'xml2'

Packages suggested but not available for checking: 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'cellWise'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'crayon', 'cli', 'prettycode'

Packages suggested but not available for checking:
  'testthat', 'mockery', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'proto', 'rjson'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'urltools', 'glmnet', 'XML', 'httr', 'xml2', 'curl', 'virustotal',
  'aws.alexa', 'jsonlite', 'devtools', 'R.utils'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'lintr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'devtools'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rbibutils'

Packages suggested but not available for checking:
  'testthat', 'rstudioapi', 'rprojroot', 'gbRd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rdrobust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'withr', 'zeallot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertive', 'digest', 'dplyr', 'httr', 'jsonlite', 'magrittr',
  'purrr'

Packages suggested but not available for checking: 'testthat', 'uuid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'curl', 'tibble', 'hoardr', 'zip', 'jsonlite', 'mime'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gridExtra', 'ggplot2', 'network', 'igraph', 'reshape2', 'scales',
  'anytime', 'Hmisc', 'statnet.common', 'ergm', 'isotone'

Packages suggested but not available for checking: 'survey', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'rjson', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'mvtnorm', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'ggplot2', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'serial'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'berryFunctions', 'pbapply'

Packages suggested but not available for checking:
  'RCurl', 'leaflet', 'knitr', 'rmarkdown', 'testthat', 'roxygen2',
  'devtools', 'remotes', 'bit64', 'data.table', 'OSMscale', 'raster',
  'R.utils', 'ncdf4', 'readr', 'dwdradar', 'XML', 'sp', 'rgdal'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'rgrass7'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reactable', 'dplyr', 'htmltools', 'htmlwidgets', 'magrittr',
  'purrr', 'sass', 'shiny', 'stringr', 'tippy', 'webshot'

Packages suggested but not available for checking: 'dataui', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'htmltools', 'htmlwidgets', 'jsonlite', 'reactR'

Packages suggested but not available for checking:
  'covr', 'crosstalk', 'dplyr', 'leaflet', 'rmarkdown', 'shiny',
  'sparkline', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Packages suggested but not available for checking:
  'shiny', 'knitr', 'rmarkdown', 'htmltools', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rootSolve', 'deSolve', 'shape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmltools'

Packages suggested but not available for checking:
  'htmlwidgets', 'rmarkdown', 'shiny', 'V8', 'knitr', 'usethis',
  'jsonlite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Packages required but not available:
  'readxl', 'dplyr', 'hutils', 'fst', 'purrr', 'tidyr', 'stringi',
  'glue', 'httr', 'rvest', 'xml2', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bmp', 'jpeg', 'png', 'tiff'

Packages suggested but not available for checking: 'pixmap', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'readMzXmlData', 'MALDIquantForeign'
Packages required but not available: 'plyr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'raster', 'stringr', 'rgdal', 'rgeos', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'NCmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rentrez'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'R.utils'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'data.table', 'zoo', 'readr',
  'lubridate', 'zip'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'haven', 'jsonlite', 'readr', 'readxl'

Packages suggested but not available for checking:
  'devtools', 'dplyr', 'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'mvbutils'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'R.utils', 'xml2', 'readxl', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'base64enc', 'digest', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'rgl', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'cellranger', 'readr', 'stringi'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'rvest', 'purrr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'tidyr', 'dplyr', 'purrr', 'rlang', 'xml2', 'rvest',
  'stringr', 'httr', 'lubridate'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown', 'markdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'readr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'gdata'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'clipr', 'crayon', 'hms', 'lifecycle', 'R6', 'rlang',
  'tibble', 'vroom', 'cpp11', 'tzdb'

Packages suggested but not available for checking:
  'covr', 'curl', 'knitr', 'rmarkdown', 'spelling', 'stringi',
  'testthat', 'tzdb', 'waldo', 'withr', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'xml2', 'purrr', 'dplyr', 'rlang', 'stringi', 'magrittr',
  'deSolve'

Packages suggested but not available for checking:
  'testthat', 'igraph', 'knitr', 'rmarkdown', 'ggplot2', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'MatrixExtra', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'tibble', 'purrr', 'readr', 'stringr', 'plyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'antiword', 'data.table', 'digest', 'httr', 'jsonlite', 'pdftools',
  'readODS', 'readxl', 'streamR', 'stringi', 'striprtf', 'tibble',
  'xml2'

Packages suggested but not available for checking:
  'knitr', 'pkgload', 'rmarkdown', 'quanteda', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'curl'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'chk', 'hms', 'DBI', 'RSQLite', 'lifecycle', 'tibble'

Packages suggested but not available for checking:
  'covr', 'pool', 'testthat', 'knitr', 'rmarkdown', 'units', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cellranger', 'Rcpp', 'tibble', 'progress'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'rprojroot', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'xml2', 'cellranger'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'dplyr', 'lifecycle', 'plyr', 'purrr', 'rlang', 'R6',
  'tibble'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'plotly', 'testthat', 'tidyr', 'xpectr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Note: found 8 marked UTF-8 strings
Skipping vignette re-building
Packages suggested but not available for checking:
  'Rmosek', 'knitr', 'digest'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/Bdecon.Rnw'
   'inst/doc/medde.Rnw'
   'inst/doc/rebayes.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/Bdecon.Rnw'
   'vignettes/medde.Rnw'
   'vignettes/rebayes.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'assertthat'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'stringi', 'testthat'
Packages unavailable to check Rd xrefs: 'stringi', 'rebus.unicode'
'LazyData' is specified without a 'data' directory
Running examples in 'rebus.base-Ex.R' failed
The error most likely occurred in:

> ### Name: Anchors
> ### Title: The start or end of a string.
> ### Aliases: Anchors START END exactly
> ### Keywords: datasets
> 
> ### ** Examples
> 
> START
<regex> ^
> END
<regex> $
> 
> # Usage
> x <- c("catfish", "tomcat", "cat")
> (rx_start <- START %R% "cat")
<regex> ^cat
> (rx_end <- "cat" %R% END)
<regex> cat$
> (rx_exact <- exactly("cat"))
<regex> ^cat$
> stringi::stri_detect_regex(x, rx_start)
Error in loadNamespace(x) : there is no package called 'stringi'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'rebus.base'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rebus.base'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rebus.base', 'rebus.datetimes', 'rebus.numbers', 'rebus.unicode'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rebus.base'

Package suggested but not available for checking: 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kriging', 'Rcpp'

Packages suggested but not available for checking:
  'devtools', 'dplyr', 'knitr', 'magrittr', 'rgl', 'rmarkdown',
  'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'RCurl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ReCiPa: no visible global function definition for 'count.fields'
ReCiPa: no visible global function definition for 'read.table'
Undefined global functions or variables:
  count.fields read.table
Consider adding
  importFrom("utils", "count.fields", "read.table")
to your NAMESPACE file.
Packages required but not available:
  'dplyr', 'ellipsis', 'generics', 'glue', 'gower', 'hardhat', 'ipred',
  'lifecycle', 'lubridate', 'magrittr', 'purrr', 'rlang', 'tibble',
  'tidyr', 'tidyselect', 'timeDate', 'vctrs', 'withr'

Packages suggested but not available for checking:
  'covr', 'ddalpha', 'dials', 'ggplot2', 'igraph', 'kernlab', 'knitr',
  'modeldata', 'parsnip', 'RANN', 'RcppRoll', 'rmarkdown', 'rsample',
  'RSpectra', 'testthat', 'workflows', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'stringdist', 'lpSolve', 'Rcpp'

Package suggested but not available for checking: 'simplermarkdown'

VignetteBuilder package required for checking but not installed: 'simplermarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lvec', 'ldat', 'dplyr', 'stringdist', 'lpSolve', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'vegan', 'picante', 'phangorn', 'phytools', 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GA', 'Rcpp', 'sp'

Packages suggested but not available for checking:
  'doParallel', 'knitr', 'rmarkdown', 'shiny', 'testthat', 'tufte'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'meteor', 'terra', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'sjlabelled', 'stringr', 'tidyr', 'haven', 'dplyr', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmlwidgets', 'htmltools', 'jsonlite'

Packages suggested but not available for checking:
  'shiny', 'magick', 'opencv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'imager', 'png', 'pavo', 'colorRamps', 'plotfunctions', 'abind',
  'raster', 'plot3D'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'sp', 'smoothr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'crayon'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'MatrixExtra', 'float', 'RhpcBLASctl'

Packages suggested but not available for checking:
  'recommenderlab', 'cmfrec', 'data.table', 'knitr', 'rmarkdown',
  'kableExtra', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'recommenderlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'recommenderlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arules', 'proxy', 'registry', 'irlba', 'recosystem'

Packages suggested but not available for checking: 'ROCR', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rootSolve'

Packages suggested but not available for checking:
  'plot3D', 'dplyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'rlang', 'survminer'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'openssl'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'crayon'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DBI', 'RSQLite', 'ff', 'e1071', 'ada', 'ipred', 'evd', 'data.table',
  'xtable'

Packages suggested but not available for checking: 'RUnit', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/BigData.rnw'
   'inst/doc/EVT.rnw'
   'inst/doc/Supervised.rnw'
   'inst/doc/WeightBased.rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'ggpubr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'float', 'RcppProgress'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'circular', 'prevR', 'scales', 'fields', 'move', 'knitr',
  'rmarkdown', 'sp', 'rgeos'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'visNetwork', 'readr', 'shiny', 'shinyjs',
  'jsonlite', 'DT', 'colourpicker', 'rintrojs', 'markdown',
  'rstudioapi', 'crayon', 'igraph'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'TKCat', 'base64enc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ggplot2', 'splines2', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'car', 'GPArotation', 'mclust', 'psych', 'UsingR', 'vcd'
Packages required but not available:
  'checkmate', 'chron', 'DBI', 'httr', 'labelVector', 'lubridate',
  'readr', 'stringr', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'data.table', 'keyring', 'lubridate'

Packages suggested but not available for checking:
  'devtools', 'fs', 'knitr', 'magrittr', 'qwraps2', 'rmarkdown',
  'rjson', 'secret', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'dplyr', 'httr', 'magrittr', 'readr', 'rlang', 'tibble',
  'tidyr'

Packages suggested but not available for checking:
  'covr', 'DBI', 'kableExtra', 'knitr', 'odbc', 'rmarkdown',
  'sessioninfo', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RJSONIO', 'rlang'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'mockery', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'snowfall', 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'REddyProc'

Packages suggested but not available for checking:
  'ncdf4', 'RNetCDF', 'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'purrr', 'rlang', 'readr', 'tibble', 'magrittr',
  'solartime', 'bigleaf'

Packages suggested but not available for checking:
  'testthat', 'minpack.lm', 'segmented', 'knitr', 'rmarkdown',
  'lognorm', 'ggplot2', 'tidyr', 'markdown', 'mlegp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'gtools'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DockerParallel'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'speedglm', 'PoissonBinomial', 'ShiftConvolvePoibin', 'matrixStats',
  'maftools', 'data.table', 'RColorBrewer'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'RUnit', 'BiocStyle', 'BiocGenerics', 'dplyr',
  'kableExtra', 'TCGAbiolinks', 'magick', 'qvalue'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'Rcpp', 'cli', 'foreach', 'doParallel', 'magrittr', 'dplyr',
  'rlang', 'geos', 'wk', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rlang', 'vctrs', 'tidyselect', 'stringr', 'dplyr', 'sf',
  'doParallel', 'foreach', 'servr', 'sys', 'coda', 'ggplot2',
  'patchwork', 'readr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'igraph', 's2', 'lwgeom', 'withr', 'leaflet', 'leafgl', 'loo',
  'Rmpi', 'knitr', 'rmarkdown', 'rmapshaper', 'scales', 'units',
  'spdep', 'RSpectra', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'roxygen2'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'testthat', 'rmarkdown', 'stringi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'sp', 'plyr', 'rgeos'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rgdal', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppThread'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

Package suggested but not available for checking: 'plumber'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BAT', 'dismo', 'gdistance', 'geosphere', 'jsonlite', 'maptools',
  'raster', 'rgdal', 'rgeos', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'imager'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'storr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'sys', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'AER'
Running examples in 'REEMtree-Ex.R' failed
The error most likely occurred in:

> ### Name: REEMtree
> ### Title: Create a RE-EM tree
> ### Aliases: REEMtree
> ### Keywords: tree models
> 
> ### ** Examples
> 
> data(simpleREEMdata)
> REEMresult<-REEMtree(Y~D+t+X, data=simpleREEMdata, random=~1|ID)
> 
> # Estimation allowing for autocorrelation
> REEMresult<-REEMtree(Y~D+t+X, data=simpleREEMdata, random=~1|ID,
+ 	correlation=corAR1())
> 
> # Random parameters model for the random effects
> REEMresult<-REEMtree(Y~D+t+X, data=simpleREEMdata, random=~1+X|ID)
> 
> # Estimation with a subset
> sub <- rep(c(rep(TRUE, 10), rep(FALSE, 2)), 50)
> REEMresult<-REEMtree(Y~D+t+X, data=simpleREEMdata, random=~1|ID,
+ 	subset=sub)
> 
> # Dataset from the R library "AER"
> data("Grunfeld", package = "AER")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called 'AER'
Calls: data -> find.package
Execution halted
Packages required but not available: 'extremevalues', 'car', 'outliers'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'eList', 'matchr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgdal', 'spdep', 'mvtnorm', 'coda', 'MCMCglmm', 'Rdpack'

Packages suggested but not available for checking:
  'maptools', 'maps', 'sp', 'knitr', 'rmarkdown', 'RColorBrewer',
  'captioner', 'rcrossref'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ash', 'future', 'future.apply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'stringdist', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SemiPar', 'VGAM', 'VGAMdata', 'caret', 'expm', 'mvtnorm',
  'sandwich', 'dplyr', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'jsonlite', 'plyr', 'httr', 'lubridate', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'testthat', 'bibtex'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ks', 'gridExtra', 'ggplot2', 'RColorBrewer', 'sp', 'stringr',
  'foreach', 'doParallel', 'pracma', 'misc3d', 'rgl', 'mbend',
  'matrixcalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'crayon', 'lubridate', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'jsonlite', 'tibble', 'dplyr', 'httr'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fda', 'magic', 'gamm4', 'lme4', 'RLRsim', 'grpreg', 'ggplot2', 'pbs'

Packages suggested but not available for checking:
  'RColorBrewer', 'reshape2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'tidyr', 'shiny', 'reshape2', 'dplyr', 'gridExtra',
  'lme4', 'plotly', 'refund', 'registr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bestglm', 'leaps', 'VGAM', 'randomForest', 'rpart.plot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
cluster.reg: no visible global function definition for 'rnorm'
cluster.reg: no visible global function definition for 'runif'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Package required but not available: 'statmod'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'covr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'magrittr', 'pipeR'
'LazyData' is specified without a 'data' directory
Running examples in 'regexPipes-Ex.R' failed
The error most likely occurred in:

> ### Name: grep
> ### Title: Overriding grep from base package
> ### Aliases: gregexpr grep grepl gsub regexec regexpr sub
> 
> ### ** Examples
> 
> library(magrittr)
Error in library(magrittr) : there is no package called 'magrittr'
Execution halted
Packages required but not available: 'shiny', 'shinyjs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'DT', 'RColorBrewer', 'golem', 'shiny', 'shinyBS',
  'shinythemes', 'processx', 'htmltools', 'data.table', 'stringr',
  'tidyr', 'pkgload', 'rvest', 'xml2', 'purrr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'FNN', 'gbm', 'modelr', 'randomForest'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'lme4'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'philentropy', 'terra'

Packages suggested but not available for checking:
  'supercells', 'sf', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'knitr', 'pinyin', 'textshaping'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'countrycode', 'tidyselect', 'purrr', 'rlang',
  'glue', 'tidyr', 'readxl', 'stringr', 'assertthat', 'tibble', 'here'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'covr', 'spelling', 'devtools',
  'eurostat', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'tidyr', 'magrittr', 'dplyr', 'gridExtra', 'Rcpp',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Namespace in Imports field not imported from: 'MASS'
  All declared Imports should be used.
Package required but not available: 'mvtnorm'

Package suggested but not available for checking: 'plgp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Deriv', 'assertthat', 'sandwich'

Packages suggested but not available for checking:
  'furrr', 'future', 'geepack', 'knitr', 'mice', 'mitools', 'modelr',
  'purrr', 'rlang', 'rmarkdown', 'stringr', 'testthat', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glasso', 'igraph', 'knitr', 'Rcpp', 'RcppArmadillo', 'lavaan'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'vioplot', 'sm', 'beanplot', 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'sns', 'MfUSampler'
Errors in running code in vignettes:
when running code in 'RegressionFactory.Rnw'

> options(prompt = "R> ", continue = "+  ", width = 70, 
+     useFancyQuotes = FALSE)

> library(RegressionFactory)
RegressionFactory 0.7.4

> loglike.logistic <- function(beta, X, y, fgh) {
+     regfac.expand.1par(beta, X, y, fbase1.binomial.logit, fgh, 
+         n = 1)
+ }

> logprior.logistic <- function(beta, mu.beta, sd.beta, 
+     fgh) {
+     f <- sum(dnorm(beta, mu.beta, sd.beta, log = TRUE))
+     if (fgh == 0) 
+ .... [TRUNCATED] 

> logpost.logistic <- function(beta, X, y, mu.beta, 
+     sd.beta, fgh) {
+     ret.loglike <- loglike.logistic(beta, X, y, fgh)
+     ret.logprior < .... [TRUNCATED] 

> N <- 1000

> K <- 5

> X <- matrix(runif(N * K, min = -0.5, max = +0.5), 
+     ncol = K)

> beta <- runif(K, min = -0.5, max = +0.5)

> y <- rbinom(N, size = 1, prob = 1/(1 + exp(-X %*% 
+     beta)))

> beta.glm <- glm(y ~ X - 1, family = "binomial")$coefficients

> library(sns)

  When sourcing 'RegressionFactory.R':
Error: there is no package called 'sns'
Execution halted

  'RegressionFactory.Rnw' using 'latin1'... failed
Error(s) in re-building vignettes:
--- re-building 'RegressionFactory.Rnw' using Sweave
RegressionFactory 0.7.4

Error: processing vignette 'RegressionFactory.Rnw' failed with diagnostics:
 chunk 9 
Error in library(sns) : there is no package called 'sns'

--- failed re-building 'RegressionFactory.Rnw'

SUMMARY: processing the following file failed:
  'RegressionFactory.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'shiny', 'golem', 'echarts4r', 'shinyAce', 'shinydashboard',
  'shinycustomloader', 'shinydashboardPlus', 'rlang', 'shinyjs',
  'neuralnet', 'DT', 'randomForest', 'e1071', 'kknn', 'glmnet', 'gbm',
  'pls', 'htmltools', 'rpart.plot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'dplyr', 'magrittr', 'tidyr', 'usdm', 'scales',
  'robustbase', 'stringr', 'MuMIn', 'ggplot2', 'lspline'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rmpi', 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SSBtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'Rcpp', 'Rsolnp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'snowfall', 'markdown', 'GA', 'caret', 'glmnet', 'ISLR', 'lbfgs',
  'numDeriv', 'psych', 'knitr', 'nloptr', 'NlcOptim', 'optimx',
  'semPlot', 'colorspace', 'plyr', 'matrixStats', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'formattable', 'effsize', 'mefa', 'plyr', 'plotrix', 'sjPlot',
  'sjmisc', 'sjlabelled'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FNN', 'mvtnorm', 'dummies', 'sandwich'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gtools', 'psych', 'RGCCA', 'ggplot2', 'mice', 'colorspace'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'dplyr', 'ggplot2', 'glue', 'gt', 'lpdensity', 'rlang',
  'scales', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'covr', 'CBPS', 'devtools', 'estimatr', 'knitr', 'rmarkdown', 'sf',
  'testthat', 'USAboundaries', 'tibble', 'htmltools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rehh.data'

Packages suggested but not available for checking:
  'ape', 'bookdown', 'data.table', 'gap', 'knitr', 'qqman',
  'rmarkdown', 'R.utils', 'testthat', 'vcfR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rtweet', 'tibble', 'dplyr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'hash', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'interval', 'Icens'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'data.table', 'dplyr', 'viridis', 'viridisLite', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'survey', 'mitools', 'corpcor'

Package suggested but not available for checking: 'care'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'compare'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'sets'

Packages suggested but not available for checking:
  'Rgraphviz', 'clue', 'Rglpk', 'lpSolve', 'Rsymphony'

Packages which this enhances but not available for checking:
  'seriation', 'Rcplex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'densEstBayes'

Package suggested but not available for checking: 'locfit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'ggforce', 'ggplot2', 'xlsx', 'dplyr', 'sf', 'rmarkdown'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/relevance-descr.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/relevance-descr.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'trust', 'sna', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'foreach'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'tidyr', 'ggplot2', 'ggExtra', 'dplyr', 'purrr', 'rlang',
  'tibble', 'vctrs', 'bde'

Package suggested but not available for checking: 'monotone'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
Packages required but not available:
  'relaimpo', 'Rmisc', 'caret', 'ggplot2', 'reshape2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'Rcmdr'
Packages required but not available:
  'FuzzyNumbers.Ext.2', 'matrixcalc', 'Rcpp', 'Rdpack', 'Ryacas0',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'ggExtra', 'ggplot2', 'gridExtra', 'MomTrunc', 'TTmoment', 'tmvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Familias', 'gWidgets2', 'gWidgets2tcltk'

Packages suggested but not available for checking:
  'knitr', 'pander', 'rmarkdown', 'tkrplot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xtable', 'multicool', 'rvest', 'stringr', 'xml2', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'date', 'ggplot2', 'pammtools', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'units'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'knitr', 'lwgeom', 'magrittr', 'maps',
  'rmarkdown', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rdpack', 'progress'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'knitr', 'rstudioapi', 'rematch2'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'assertthat'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'JointAI', 'rjags', 'coda', 'foreach', 'data.table', 'future',
  'doFuture', 'mathjaxr', 'ggplot2', 'ordinal', 'progressr', 'mcmcse',
  'reshape2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'ggpubr', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'proxy', 'igraph', 'clusterGeneration'

Packages suggested but not available for checking:
  'graph', 'Rgraphviz', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'raster', 'gridExtra', 'latticeExtra', 'mapdata', 'scales'

Packages suggested but not available for checking: 'maps', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pbdZMQ', 'getPass', 'argon2', 'png'

Packages suggested but not available for checking: 'sodium', 'pbdRPC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'brew', 'callr', 'curl', 'covr', 'git2r', 'knitr', 'mockery',
  'pkgbuild', 'pingr', 'rmarkdown', 'rprojroot', 'testthat',
  'webfakes', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'curl'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'foreach', 'doParallel'

Packages suggested but not available for checking:
  'texreg', 'statnet', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'data.table', 'Rcpp', 'R6', 'foreach', 'plotly', 'doParallel',
  'scales', 'magrittr', 'concatenate', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'webshot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'optimx', 'mvtnorm', 'AER', 'lme4', 'data.table',
  'corpcor', 'Rcpp', 'lmtest', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'covr', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'evd', 'numDeriv'

Packages suggested but not available for checking: 'ismev', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rsolnp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'R6', 'BiocManager', 'cli', 'covr', 'devtools', 'knitr', 'miniUI',
  'packrat', 'pak', 'remotes', 'reticulate', 'rmarkdown', 'rstudioapi',
  'shiny', 'testthat', 'uuid', 'yaml'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'VGAM'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gplots', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 6034 marked UTF-8 strings
Packages required but not available:
  'DBI', 'config', 'dplyr', 'magrittr', 'lubridate', 'rmarkdown',
  'processx', 'readr', 'rstudioapi', 'pool', 'openxlsx'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'knitr', 'RSQLite', 'RPostgres', 'pacman'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Malformed Title field: should not end in a period.
Packages in Depends field not imported from:
  'MASS' 'nlme'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GlobTestMissing: no visible global function definition for 'lme'
GlobTestMissing: no visible global function definition for 'anova'
TestStatSP: no visible global function definition for 'pf'
TestStatSimple: no visible global function definition for 'ginv'
TestStatSimple: no visible global function definition for 'pf'
Undefined global functions or variables:
  anova ginv lme pf
Consider adding
  importFrom("stats", "anova", "pf")
to your NAMESPACE file.
Package required but not available: 'rmutil'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'dplyr', 'stringr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'kableExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'circlize', 'igraph', 'reshape2', 'stringdist', 'stringi', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'knitr', 'kableExtra', 'rmarkdown', 'carData', 'testthat',
  'checkmate', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'modules', 'dat', 'knitr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'txtplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'PowerTOST', 'lmerTest', 'pbkrtest'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'spatstat.geom', 'spatstat.core', 'spatstat.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'metafor', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'MBESS', 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'blavaan', 'mice', 'quadprog', 'runjags', 'rjags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/ReplicationSuccess.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/ReplicationSuccess.Rnw'
(Is a VignetteBuilder field missing?)
Running 'run-all.R'
Running the tests in 'tests/run-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'shiny', 'colourpicker'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'digest', 'httr', 'plyr', 'R.cache'

Package suggested but not available for checking: 'xlsx'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'flextable', 'lme4', 'lmerTest', 'officer', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rstudioapi', 'git2r', 'rmarkdown', 'httr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Packages suggested but not available for checking:
  'igraph', 'knitr', 'shiny', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'crayon', 'dplyr', 'httr', 'janitor', 'jsonlite',
  'lubridate', 'magrittr', 'purrr', 'tibble'

Packages suggested but not available for checking:
  'devtools', 'ggplot2', 'ggrepel', 'knitr', 'tinytex', 'rmarkdown',
  'scales', 'tufte', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fmtr', 'stringi', 'crayon', 'jpeg', 'zip', 'withr'

Packages suggested but not available for checking:
  'testthat', 'magrittr', 'dplyr', 'tidyr', 'readr', 'knitr',
  'rmarkdown', 'ggplot2', 'gridExtra', 'survminer', 'logr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rprojroot', 'fs', 'rmarkdown', 'yaml', 'callr', 'rstudioapi',
  'knitr'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayestestR', 'effectsize', 'insight', 'parameters', 'performance',
  'datawizard'

Packages suggested but not available for checking:
  'BayesFactor', 'brms', 'httr', 'ivreg', 'knitr', 'lavaan', 'lme4',
  'logspline', 'dplyr', 'rmarkdown', 'rstanarm', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ore'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'LDRTools'

Packages suggested but not available for checking: 'tourr', 'amap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'DT', 'REPPlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
MBoxtest: no visible global function definition for 'var'
jrparams: no visible global function definition for 'prcomp'
jrparams: no visible global function definition for 'predict'
jrparams: no visible global function definition for 'qchisq'
jrparams: no visible global function definition for 'qf'
Undefined global functions or variables:
  prcomp predict qchisq qf var
Consider adding
  importFrom("stats", "prcomp", "predict", "qchisq", "qf", "var")
to your NAMESPACE file.
Packages required but not available:
  'doParallel', 'foreach', 'dplyr', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'whisker'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'callr', 'cli', 'clipr', 'fs', 'glue', 'knitr', 'rlang', 'rmarkdown',
  'rstudioapi', 'withr'

Packages suggested but not available for checking:
  'covr', 'fortunes', 'miniUI', 'mockr', 'rprojroot', 'sessioninfo',
  'shiny', 'spelling', 'styler', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'openxlsx', 'ggplot2', 'gridExtra', 'xtable', 'metafor', 'lme4',
  'reshape', 'GetoptLong', 'dplyr', 'httr', 'jsonlite', 'tidyr',
  'readr', 'stringr', 'tibble'

Packages suggested but not available for checking: 'testthat', 'assertthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'DBI', 'digest', 'fpCompare', 'gdalUtilities', 'glue',
  'magrittr', 'Require', 'raster', 'RSQLite', 'rlang', 'sp'

Packages suggested but not available for checking:
  'covr', 'crayon', 'fastdigest', 'fasterize', 'future', 'gdalUtils',
  'googledrive', 'httr', 'lwgeom', 'qs', 'knitr', 'RCurl', 'rgdal',
  'rgeos', 'rmarkdown', 'sf', 'terra', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'proj4', 'PROJ', 'crsmeta'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'jsonlite', 'pillar', 'base64enc'

Packages suggested but not available for checking:
  'highr', 'Cairo', 'stringr', 'testthat', 'leaflet'

Packages which this enhances but not available for checking:
  'data.table', 'tibble', 'htmlwidgets', 'vegalite', 'plotly',
  'geojsonio'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'optparse', 'randomForest', 'flux'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tibble'

Packages suggested but not available for checking:
  'gapminder', 'jsonlite', 'purrr', 'rprojroot', 'testthat',
  'wesanderson', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'assertthat', 'stringi', 'urltools', 'brotli', 'jsonlite',
  'xml2', 'webutils'

Packages suggested but not available for checking:
  'fiery', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'curl', 'jsonlite', 'magrittr', 'lazyeval', 'whisker', 'R6'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'remotes'

Packages suggested but not available for checking: 'lintr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'remotes'

Packages suggested but not available for checking: 'covr', 'testit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Package required but not available: 'Runuran'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'dplyr', 'data.table', 'jsonlite', 'xml2', 'digest', 'ncdf4',
  'tibble', 'hoardr'

Packages suggested but not available for checking: 'testthat', 'vcr'

Package which this enhances but not available for checking: 'taxize'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'dplyr', 'ggplot2', 'httr', 'maps', 'ncdf4', 'parsedate',
  'plotdap', 'readr', 'rerddap', 'sf', 'sp'

Packages suggested but not available for checking:
  'cmocean', 'gganimate', 'knitr', 'mapdata', 'maptools', 'rgdal',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'psych', 'combinat', 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BB', 'nleqslv', 'dfoptim', 'optimx', 'SQUAREM', 'directlabels',
  'ggplot2', 'reda', 'scam', 'Rcpp', 'rootSolve', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'resample'
Package suggested but not available for checking: 'splus2R'
.resampleMakeFunction: no visible global function definition for 'is'
.resampleSetSeed: no visible global function definition for 'runif'
CI.bca: no visible global function definition for 'is'
CI.bca: no visible global function definition for 'qnorm'
CI.bca: no visible global function definition for 'pnorm'
CI.t: no visible global function definition for 'qt'
ExpandProbs: no visible global function definition for 'pnorm'
ExpandProbs: no visible global function definition for 'qt'
colVars : f: no visible global function definition for 'var'
colVars: no visible global function definition for 'var'
hist.resample: no visible global function definition for 'density'
hist.resample: no visible global function definition for 'lines'
hist.resample: no visible global function definition for 'points'
hist.resample: no visible global function definition for 'approx'
hist.resample: no visible global function definition for 'segments'
resample: no visible global function definition for 'is'
samp.bootknife: no visible global function definition for 'runif'
samp.bootstrap: no visible global function definition for 'runif'
Undefined global functions or variables:
  approx density is lines pnorm points qnorm qt runif segments var
Consider adding
  importFrom("graphics", "lines", "points", "segments")
  importFrom("methods", "is")
  importFrom("stats", "approx", "density", "pnorm", "qnorm", "qt",
             "runif", "var")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Running 'runTests.R'
Running the tests in 'tests/runTests.R' failed.
Complete output:
  > # Copyright 2014 Google Inc. All rights reserved.
  > #
  > # Use of this source code is governed by a BSD-style
  > # license that can be found in the LICENSE file or at
  > # http://opensource.org/licenses/BSD-3-Clause
  > 
  > # Run all .t tests in tests/
  > 
  > require("splus2R")
  Loading required package: splus2R
  Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
    there is no package called 'splus2R'
  > 
  > files <- list.files(pattern = "\\.t$")
  > 
  > for(file in files)
  +   do.test(file)
  Error in do.test(file) : could not find function "do.test"
  Execution halted
Packages required but not available:
  'data.table', 'dbscan', 'igraph', 'irlba', 'reticulate'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rentrez', 'XML', 'plyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'iterators', 'Rcpp', 'mathjaxr', 'magrittr', 'lifecycle',
  'data.table', 'RcppArmadillo'

Packages suggested but not available for checking:
  'prospectr', 'doParallel', 'testthat', 'formatR', 'rmarkdown',
  'bookdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat");
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'plyr', 'Rcpp', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package which this enhances but not available for checking: 'SmartMeterAnalytics'
Packages required but not available: 'R6', 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'haven', 'readr', 'readxl', 'ssh', 'sys',
  'mongolite', 'dplyr', 'dbplyr', 'DBI', 'RMariaDB', 'RPostgres',
  'sparklyr', 'RPresto', 'nodbi', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'signal', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'PKNCA', 'birk', 'lubridate', 'marelac', 'measurements',
  'minpack.lm', 'seacarb', 'segmented'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'magrittr'
Packages required but not available:
  'data.table', 'dplyr', 'glue', 'lubridate', 'magrittr', 'marelac',
  'purrr', 'readxl', 'roll', 'segmented', 'stringr', 'xml2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rMR', 'DiagrammeR', 'FishResp',
  'respirometry', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'rjson', 'xml2'

Packages suggested but not available for checking:
  'chron', 'knitr', 'rmarkdown', 'tinytest', 'remotes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'RCurl', 'rjson', 'S4Vectors', 'yaml'

Packages suggested but not available for checking:
  'getPass', 'rsolr', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'RJSONIO'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcmdr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/RESTguide.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'ic.infer', 'lavaan', 'mvtnorm', 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rserve', 'Rcpp', 'R6', 'uuid', 'checkmate', 'mime', 'jsonlite'

Packages suggested but not available for checking:
  'tinytest', 'lgr', 'lintr', 'knitr', 'rmarkdown', 'curl', 'sys'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'useful', 'dplyr', 'rmarkdown'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rjson'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'cli', 'RcppEigen', 'RcppThread'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'magrittr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppTOML', 'here', 'jsonlite', 'png', 'rappdirs', 'withr'

Packages suggested but not available for checking:
  'callr', 'knitr', 'rlang', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RImageJROI', 'png', 'ttutils', 'sp', 'geometry', 'RTriangle', 'rgl',
  'R.matlab', 'R6'

Packages suggested but not available for checking:
  'spelling', 'testthat', 'gWidgets2RGtk2', 'gWidgets2', 'cairoDevice',
  'RGtk2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'textreadr', 'httr'

Package suggested but not available for checking: 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pbapply', 'preprocessCore'

Package suggested but not available for checking: 'ccdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'gridExtra', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'assertthat', 'dplyr', 'fs', 'glue', 'haven', 'here', 'labelled',
  'magrittr', 'pillar', 'purrr', 'rlang', 'snakecase', 'stringr',
  'tibble', 'tidyr', 'tidyselect', 'vctrs'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'markdown', 'png', 'rmarkdown',
  'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'stringi', 'httr', 'stringr', 'rvest'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'later'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'jsonlite', 'RCurl', 'XML', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'furrr', 'purrr', 'dplyr', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'tidyr', 'rivr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayesplot', 'Rcpp', 'rust', 'RcppArmadillo'

Packages suggested but not available for checking:
  'evdbayes', 'ggplot2', 'knitr', 'microbenchmark', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'pso', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmarkdown'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'XML', 'stringr', 'magrittr', 'gtools', 'plyr', 'purrr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'jsonlite', 'purrr', 'httr', 'tidyselect',
  'tidyr', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'mipfp', 'dplyr', 'truncdist'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'markdown', 'knitr', 'DT'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'phytools', 'dplyr', 'ggtree', 'treeio', 'tidytree',
  'ggplot2', 'reshape', 'ggthemes', 'tidyr', 'tibble', 'gginnards',
  'ggplotify', 'ggimage', 'ggpp', 'png', 'deeptime'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'RJSONIO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bigrquery', 'config', 'dashboardthemes', 'DBI', 'dbplyr', 'dplyr',
  'DT', 'gargle', 'glue', 'golem', 'httr', 'jsonlite', 'magrittr',
  'pkgload', 'purrr', 'redcapAPI', 'REDCapR', 'rlang', 'RPostgres',
  'RSQLite', 'shiny', 'shinycssloaders', 'shinydashboard',
  'shinydashboardPlus', 'shinyjs', 'shinyWidgets', 'snakecase',
  'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'fs', 'gt', 'here', 'htmltools', 'knitr', 'processx', 'readr',
  'rmarkdown', 'rstudioapi', 'spelling', 'testthat', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'covr', 'tinytest'
Package unavailable to check Rd xrefs: 'robustbase'
Packages required but not available:
  'ape', 'stringr', 'knitr', 'comprehenr', 'jsonlite', 'usethis',
  'rstudioapi'

Packages suggested but not available for checking:
  'markdown', 'rmarkdown', 'testthat', 'ggplot2', 'devtools',
  'RevGadgets'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ade4', 'modeltools', 'ngram', 'plotly', 'slam', 'shiny',
  'shinydashboard', 'SnowballC', 'stringdist', 'tm', 'topicmodels',
  'viridisLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'jsonlite', 'purrr', 'httr', 'tidyselect',
  'tidyr', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
plot.reweight: no visible global function definition for 'par'
plot.reweight: no visible global function definition for 'density'
plot.reweight: no visible global function definition for 'rug'
reweight: no visible global function definition for 'aggregate'
search.best.h: no visible global function definition for 'quantile'
Undefined global functions or variables:
  aggregate density par quantile rug
Consider adding
  importFrom("graphics", "par", "rug")
  importFrom("stats", "aggregate", "density", "quantile")
to your NAMESPACE file.
Packages required but not available: 'rockchalk', 'lme4', 'plm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'digest', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lazyeval'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'ggplot2', 'Hmisc', 'knitr', 'magrittr',
  'rmarkdown', 'roxygen2', 'rvest', 'stringr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'brio', 'callr', 'cli', 'desc', 'dplyr', 'glue', 'pkgbuild',
  'pkgload', 'purrr', 'rlang', 'rprojroot', 'stringi', 'tibble',
  'withr'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'mockr', 'rmarkdown', 'rstudioapi', 'testthat',
  'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'rjson', 'httpuv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'purrr', 'tidyr', 'stringr',
  'tidyselect', 'pbapply'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'fs', 'tibble', 'xml2'

Packages suggested but not available for checking:
  'dplyr', 'knitr', 'rmarkdown', 'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rfast', 'RANN', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppZiggurat', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'CCA', 'PMA'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ConsensusClusterPlus', 'randomForest', 'iCluster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

Package which this enhances but not available for checking: 'RSEIS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mice', 'ranger'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Package required but not available: 'bdsmatrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'dtplyr', 'tidyr', 'stringr', 'sf', 'data.table', 'bit64',
  'tidyselect', 'rlang', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gganimate', 'R2jags', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'dplyr', 'httr', 'jsonlite', 'lubridate', 'magrittr',
  'purrr', 'tidyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RJSONIO', 'httr', 'httpuv', 'plyr', 'yaml', 'ggplot2', 'XML'

Packages suggested but not available for checking:
  'testthat', 'gdata', 'uuid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.oo', 'digest', 'R.methodsS3', 'R.utils', 'R.cache'

Package suggested but not available for checking: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'glue', 'httr', 'stringr', 'lubridate', 'magrittr', 'readr',
  'tibble', 'curl', 'xts', 'TTR', 'xml2', 'rvest', 'data.table',
  'janitor', 'cli', 'PerformanceAnalytics'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ranger'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'progress', 'memoise', 'rlang', 'magrittr', 'tibble',
  'readr', 'stringr', 'jsonlite', 'DBI', 'dplyr', 'dbplyr', 'duckdb',
  'contentid', 'rstudioapi'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'covr', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'clisymbols', 'crayon', 'readbitmap', 'rlang', 'settings',
  'stringr', 'tidyr', 'withr'

Packages suggested but not available for checking:
  'FSA', 'covr', 'pkgdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'ggplot2'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'prettydoc', 'patchwork', 'devtools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'data.table', 'assertthat', 'ggplot2', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'pracma', 'ggplot2', 'sf', 'rworldmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'igraph', 'rgdal', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spdep', 'spData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RColorBrewer'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'MKomics'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rJava', 'raster', 'rgdal', 'checkmate', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'landscapemetrics'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'sp', 'sf', 'randomForest', 'zoo', 'pbapply'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rgdal'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggthemes', 'lubridate', 'magrittr',
  'RColorBrewer', 'rlang', 'tibble', 'tidyr', 'xplorerr'

Packages suggested but not available for checking:
  'covr', 'DT', 'kableExtra', 'knitr', 'rmarkdown', 'testthat',
  'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RPMG', 'GEOmap', 'RSEIS', 'splancs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking:
  'fortunes', 'stringr', 'sos', 'reshape2', 'ggplot2', 'covr',
  'testthat', 'spelling'
Running 'spelling.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'alphashape3d', 'geometry', 'rgl', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'visNetwork', 'glmnet', 'onehot', 'dplyr', 'RcppArmadillo',
  'RcppThread'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'formatR'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'dplyr', 'ggplot2', 'gridExtra', 'magrittr', 'randomForest',
  'rlang', 'scales', 'swfscMisc', 'tibble', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ranger', 'data.table', 'hdrcde', 'data.tree', 'DiagrammeR'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gmp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tibble', 'rPref', 'tidyr', 'hash'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'Rcpp', 'fda', 'plotly', 'shiny', 'Rssa', 'hrbrthemes',
  'ggplot2', 'tibble', 'RSpectra', 'httr', 'markdown', 'RcppArmadillo',
  'RcppEigen'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'sjmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'randomForest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomForest', 'ggplot2', 'binaryLogic', 'dplyr', 'titanic', 'prob',
  'ggpubr', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'randomForest', 'loon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Package suggested but not available for checking: 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
gabriel.plot: no visible global function definition for 'barplot'
gabriel.plot: no visible global function definition for 'arrows'
rgabriel: no visible binding for global variable 'sd'
rgabriel : psmm_x: no visible global function definition for 'pnorm'
rgabriel : psmm: no visible global function definition for 'integrate'
rgabriel : qsmm: no visible global function definition for 'qnorm'
rgabriel : qsmm: no visible global function definition for 'uniroot'
Undefined global functions or variables:
  arrows barplot integrate pnorm qnorm sd uniroot
Consider adding
  importFrom("graphics", "arrows", "barplot")
  importFrom("stats", "integrate", "pnorm", "qnorm", "sd", "uniroot")
to your NAMESPACE file.
Package required but not available: 'gsl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'plyr', 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'ggplot2', 'crul', 'data.table', 'whisker', 'magrittr',
  'jsonlite', 'oai', 'tibble', 'wellknown', 'lazyeval', 'R6',
  'conditionz'

Packages suggested but not available for checking:
  'testthat', 'sp', 'rgeos', 'png', 'raster', 'protolite', 'sf',
  'randgeo', 'vcr', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'plyr', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sn', 'mnormt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tkrplot'
Package required but not available: 'Deriv'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Packages suggested but not available for checking:
  'knitr', 'DBI', 'RSQLite', 'maptools', 'mapview', 'rmarkdown',
  'curl', 'rgeos'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'jsonlite', 'RCurl', 'httr', 'plyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'rstudioapi', 'leaflet', 'magrittr', 'jsonlite',
  'processx', 'leafem', 'crayon', 'R6', 'cli'

Packages suggested but not available for checking:
  'leaflet.extras2', 'magick', 'geojsonio', 'sf', 'stars',
  'googledrive', 'googleCloudStorageR', 'gargle', 'raster', 'rgdal',
  'httr', 'digest', 'spelling', 'testthat', 'future', 'covr', 'knitr',
  'rmarkdown', 'png'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'copula', 'RGENERATE', 'blockmatrix', 'stringr', 'RMAWGEN'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'lubridate', 'mapview', 'sf', 'lmom',
  'ggplot2', 'reshape2', 'RefManageR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RMAWGEN', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available:
  'dplyr', 'purrr', 'stringr', 'httr', 'rvest', 'foreach', 'tibble',
  'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
genoud: multiple local function definitions for 'fn1.bfgs' with
  different formal arguments
genoud: multiple local function definitions for 'gr1' with different
  formal arguments
genoud: multiple local function definitions for 'hess.fn' with
  different formal arguments
genoud_transform: multiple local function definitions for 'fn1.bfgs'
  with different formal arguments
genoud_transform: multiple local function definitions for 'gr1' with
  different formal arguments
Package unavailable to check Rd xrefs: 'Matching'
Running 'tests.R'
  Comparing 'tests.Rout' to 'tests.Rout.save' ... OK
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'digest', 'sf', 'Rcpp', 'BH'

Packages suggested but not available for checking: 'wkb', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'readr', 'sf', 'stringr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geosphere', 'leaflet', 'pals', 'RANN', 'raster', 'sp',
  'spatstat.geom', 'splancs'

Packages suggested but not available for checking:
  'htmlwidgets', 'leafsync', 'knitr', 'rgdal', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Packages suggested but not available for checking:
  'maptools', 'testthat', 'XML', 'maps', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MatrixModels', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'igraph', 'servr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'R6'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'knitr', 'magrittr', 'rmarkdown', 'sf', 'tmap'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'raster', 'sf', 'tmap', 'Rdpack', 'XML', 'xml2', 'fields',
  'urltools', 'rjson', 'rvest', 'curl', 'httr', 'mapview', 'sp',
  'stars'

Package suggested but not available for checking: 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjson', 'readr', 'RCurl', 'curl'

Packages suggested but not available for checking:
  'testthat', 'openssl', 'httr', 'markdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'htmltools', 'knitr', 'jsonlite', 'magrittr', 'R6'

Packages suggested but not available for checking:
  'rmarkdown', 'deldir', 'orientlib', 'misc3d', 'magick', 'plotrix',
  'tripack', 'interp', 'alphashape3d', 'js', 'akima', 'webshot2',
  'downlit', 'pkgdown', 'extrafont', 'shiny', 'manipulateWidget',
  'testthat', 'markdown', 'crosstalk'

Package which this enhances but not available for checking: 'waldo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sys', 'tibble', 'jsonlite', 'readr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gargle', 'httr', 'stringr', 'rlang', 'dplyr', 'tidyr', 'jsonlite',
  'snakecase', 'cli', 'pbapply', 'purrr', 'withr', 'rlist', 'rvest',
  'magrittr', 'memoise', 'cachem', 'rappdirs'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'DT'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'lubridate', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'httr', 'digest'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'jsonlite', 'bit64', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'png', 'sp'

Packages suggested but not available for checking:
  'PBSmapping', 'maptools', 'loa', 'RColorBrewer', 'leaflet', 'jpeg',
  'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'assertthat', 'R6'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'ckanr', 'crayon', 'crul', 'tibble'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'rgdal'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'chronosphere'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'igraph', 'network'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'grImport', 'grImport2', 'gridBase', 'gridGraphics',
  'gridSVG'

Packages suggested but not available for checking:
  'colorspace', 'jpeg', 'mapdata', 'maps', 'party', 'pixmap', 'png',
  'quantmod', 'rsvg', 'showtext', 'sysfonts', 'tikzDevice', 'XML',
  'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

Packages suggested but not available for checking:
  'rgdal', 'RSQLite', 'sp', 'sf', 'stars', 'terra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'xml2', 'rstudioapi', 'cli'

Packages suggested but not available for checking:
  'rgrass7', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RPostgres'

Packages suggested but not available for checking: 'DBItest', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'bayesm'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fastICA'

Package suggested but not available for checking: 'akima'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'magrittr', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'jsonlite', 'openssl'

Packages suggested but not available for checking:
  'curl', 'knitr', 'rmarkdown', 'testthat', 'stars', 'terra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'chron', 'RJDBC', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'htmlwidgets', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny', 'miniUI', 'rstudioapi', 'htmltools'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'IHSEP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Runuran'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fields', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bit64', 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'shiny', 'stringr'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'purrr', 'ggplot2', 'matrixStats', 'patchwork'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggtree', 'phytools', 'testthat', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'box', 'cli', 'fs', 'glue', 'lintr', 'logger', 'purrr', 'renv',
  'sass', 'shiny', 'styler', 'testthat', 'withr', 'yaml'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomNames', 'dplyr', 'matlab', 'lubridate', 'stringr', 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
GNU make is a SystemRequirements.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'pso', 'Hmisc', 'network', 'GGally', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > ## -*- mode: R -*-
  > ##
  > ## Copyright (C) 2019 Takeshi Abe <tabe@fixedpoint.jp>
  > ##
  > ## This program is free software: you can redistribute it and/or modify
  > ## it under the terms of the GNU General Public License as published by
  > ## the Free Software Foundation, either version 3 of the License, or
  > ## (at your option) any later version.
  > ##
  > ## This program is distributed in the hope that it will be useful,
  > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
  > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > ## GNU General Public License for more details.
  > ##
  > ## You should have received a copy of the GNU General Public License
  > ## along with this program.  If not, see <https://www.gnu.org/licenses/>.
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'matrixStats'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'waveslim', 'nonlinearTseries', 'lomb'

Packages suggested but not available for checking:
  'tkrplot', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
RHT.2samp : my.HotellingT2 : my.InvCov2: no visible global function
  definition for 'cov'
RHT.2samp : get.lambda : get.para: no visible global function
  definition for 'optimize'
RHT.2samp : get.lambda : gg: no visible global function definition for
  'qchisq'
RHT.2samp : get.lambda : ggl: no visible global function definition for
  'qnorm'
RHT.2samp : <anonymous>: no visible global function definition for
  'cov'
RHT.fun : my.HotellingT : my.InvCov: no visible global function
  definition for 'cov'
RHT.fun : get.lambda : get.para: no visible global function definition
  for 'optimize'
RHT.fun : get.lambda : gg: no visible global function definition for
  'qchisq'
RHT.fun : get.lambda : ggl: no visible global function definition for
  'qnorm'
RHT.fun : <anonymous>: no visible global function definition for 'cov'
Undefined global functions or variables:
  cov optimize qchisq qnorm
Consider adding
  importFrom("stats", "cov", "optimize", "qchisq", "qnorm")
to your NAMESPACE file.
Packages required but not available:
  'assertthat', 'callr', 'cli', 'crayon', 'desc', 'digest', 'httr',
  'jsonlite', 'parsedate', 'pillar', 'prettyunits', 'processx', 'R6',
  'rappdirs', 'rcmdcheck', 'rematch', 'tibble', 'uuid', 'whoami',
  'withr'

Packages suggested but not available for checking:
  'covr', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R.methodsS3', 'R.oo', 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach', 'seqinr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'RSpectra'

Packages suggested but not available for checking: 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gtools', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomizr', 'estimatr', 'generics', 'ggplot2', 'pbapply'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ri'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'MCMCpack', 'msm', 'dbarts', 'magrittr', 'foreach', 'doParallel',
  'dplyr', 'BART', 'stringr', 'tidyr', 'cowplot', 'ggplot2', 'twang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'oro.dicom', 'oro.nifti', 'nat', 'reticulate'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pedtools', 'glue', 'kinship2', 'slam'

Packages suggested but not available for checking: 'identity', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'riceidconverter'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'random'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

Packages suggested but not available for checking:
  'knitr', 'gplots', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'curl', 'assertthat', 'fst', 'readr', 'jsonlite',
  'prt', 'tibble', 'backports', 'rlang', 'vctrs', 'cli', 'glue',
  'fansi', 'openssl'

Packages suggested but not available for checking:
  'xml2', 'covr', 'testthat', 'withr', 'mockthat', 'pkgload',
  'mimic.demo', 'eicu.demo', 'progress', 'knitr', 'rmarkdown',
  'ggplot2', 'cowplot', 'forestmodel', 'rticles', 'kableExtra',
  'units', 'pdftools', 'magick'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'grImport2', 'rsvg', 'scales', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'plyr', 'httr', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ridit.raw: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  pchisq
Consider adding
  importFrom("stats", "pchisq")
to your NAMESPACE file.
Packages required but not available:
  'CVXR', 'Rcpp', 'Rdpack', 'RiemBase', 'Rdimtools', 'T4cluster',
  'DEoptim', 'lpSolve', 'maotai', 'RcppArmadillo'

Packages suggested but not available for checking:
  'R.rsp', 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'R.rsp', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'pracma', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr2', 'jsonlite', 'lubridate', 'magrittr', 'purrr', 'rlang',
  'tibble'

Packages suggested but not available for checking:
  'dplyr', 'forecast', 'ggplot2', 'httptest2', 'knitr', 'rmarkdown',
  'testthat', 'vcr', 'weathermetrics', 'xts'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'zoo', 'TTR', 'tidyr', 'tibble', 'dplyr', 'ggplot2', 'httr',
  'purrr', 'rjson', 'stringr', 'urltools', 'quantmod'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
R2ngon: no visible global function definition for 'approx'
plotR2pre: no visible global function definition for 'points'
plotR2pre: no visible global function definition for 'gray'
plotR2pre: no visible global function definition for 'legend'
plotR2pre: no visible global function definition for 'rainbow'
Undefined global functions or variables:
  approx gray legend points rainbow
Consider adding
  importFrom("grDevices", "gray", "rainbow")
  importFrom("graphics", "legend", "points")
  importFrom("stats", "approx")
to your NAMESPACE file.
Packages required but not available: 'Exact', 'plyr', 'sandwich', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'glue', 'httr', 'jsonlite', 'purrr', 'rlang', 'tibble',
  'vctrs'

Packages suggested but not available for checking:
  'covr', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'dplyr', 'stringr', 'readr', 'tibble', 'tidyr', 'haven',
  'xml2', 'data.table', 'RCurl', 'DT'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'plotly', 'ggplot2', 'shiny',
  'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spatstat.geom', 'spatstat'

Packages suggested but not available for checking: 'png', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'scales', 'jpeg', 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'R6', 'knitr', 'rmarkdown', 'stringr', 'GlobalOptions'

Packages suggested but not available for checking:
  'testthat', 'digest', 'OpenImageR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'curl', 'plyr', 'jsonlite', 'ggplot2', 'maps', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'sf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr2', 'stringr', 'cli', 'readr', 'lifecycle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R6'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'glue', 'httr', 'installr', 'jsonlite', 'magrittr',
  'pkgbuild', 'remotes', 'rmarkdown', 'shiny', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'stringi', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'glue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

Packages suggested but not available for checking: 'maptools', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'haven', 'curl', 'data.table', 'readxl', 'openxlsx', 'tibble'

Packages suggested but not available for checking:
  'bit64', 'testthat', 'knitr', 'magrittr', 'arrow', 'clipr',
  'feather', 'fst', 'hexView', 'jsonlite', 'pzfx', 'readODS', 'readr',
  'rmarkdown', 'rmatio', 'xml2', 'yaml'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'iptools', 'dplyr', 'amerika', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
desmat.sanitize: no visible global function definition for 'aggregate'
dispdist: no visible global function definition for 'quantile'
dispdist: no visible global function definition for 'hist'
dispdist: no visible global function definition for 'lines'
estate: no visible global function definition for 'weighted.mean'
estate: no visible global function definition for 'lm'
genperms: no visible global function definition for 'combn'
genprobexact: no visible global function definition for 'ave'
invert.ci: no visible global function definition for 'quantile'
invert.ci: no visible global function definition for 'uniroot'
omni.ate: no visible global function definition for 'hist'
omni.ate: no visible global function definition for 'lines'
omni.ate: no visible global function definition for 'quantile'
resresplot: no visible global function definition for 'lm'
resresplot: no visible global function definition for 'symbols'
resresplot: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline aggregate ave combn hist lines lm quantile symbols uniroot
  weighted.mean
Consider adding
  importFrom("graphics", "abline", "hist", "lines", "symbols")
  importFrom("stats", "aggregate", "ave", "lm", "quantile", "uniroot",
             "weighted.mean")
  importFrom("utils", "combn")
to your NAMESPACE file.
Packages required but not available: 'ggplot2', 'Rcpp', 'reshape2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'relsurv', 'date', 'mvtnorm', 'statmod', 'doParallel', 'foreach',
  'kernlab', 'glmnet', 'caret', 'SuperLearner'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'dplyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'data.table', 'RcppEigen'

Packages suggested but not available for checking: 'igraph', 'IsingSampler'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mlogit', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rmarkdown', 'dplyr', 'knitr', 'usethis',
  'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'gridExtra', 'magrittr', 'purrr', 'rlang',
  'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'tidyverse', 'printr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'backports', 'xml2', 'httr', 'curl', 'urltools', 'memoise',
  'BiocManager', 'cranlogs', 'covr', 'vctrs', 'pillar', 'tibble',
  'pkgload', 'devtools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'withr', 'magrittr', 'dplyr', 'testthat',
  'webmockr', 'jsonlite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'alabama', 'nloptr', 'quadprog', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'ggplot2', 'numDeriv', 'portfolioBacktest', 'prettydoc',
  'rmarkdown', 'R.rsp', 'testthat', 'viridisLite'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'nloptr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gee', 'Hmisc', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cmprsk', 'data.table', 'doParallel', 'foreach', 'ggplot2', 'lava',
  'mets', 'mvtnorm', 'plotrix', 'prodlim', 'Publish', 'ranger', 'Rcpp',
  'rms', 'timereg', 'RcppArmadillo'

Packages suggested but not available for checking:
  'smcfcs', 'casebase', 'ipw', 'gbm', 'flexsurv', 'mstate', 'nnls',
  'numDeriv', 'party', 'pec', 'penalized', 'pROC', 'randomForest',
  'randomForestSRC', 'scam', 'SuperLearner', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
KM.plot: no visible global function definition for 'lines'
SchoenSmooth: no visible global function definition for 'lm'
llCoxReg: no visible binding for global variable 'time'
risksetAUC: no visible global function definition for 'abline'
risksetROC: no visible global function definition for 'abline'
weightedKM: no visible binding for global variable 'time'
Undefined global functions or variables:
  abline lines lm time
Consider adding
  importFrom("graphics", "abline", "lines")
  importFrom("stats", "lm", "time")
to your NAMESPACE file.
Package required but not available: 'Runuran'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'httr', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Namespace in Imports field not imported from: 'base'
  All declared Imports should be used.
Package required but not available: 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'solrium', 'crul', 'jsonlite', 'data.table', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'webmockr', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SparseM', 'abind', 'xtable', 'svd'

Packages suggested but not available for checking: 'testthat', 'roxygen2'

Package which this enhances but not available for checking: 'optmatch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'rgdal', 'sp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'imputeTS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'utility'
'LazyData' is specified without a 'data' directory
Package required but not available: 'RColorBrewer'

Packages suggested but not available for checking:
  'knitr', 'maptools', 'qpdf', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'signal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rrcov', 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'knitr', 'rmarkdown', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'V8'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bbmle', 'binom', 'dplyr', 'ggplot2', 'mvtnorm', 'numDeriv',
  'openxlsx', 'readxl', 'Rcpp', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Found the following significant warnings:
  Rinit.c:170:24: warning: pointer targets in passing argument 2 of 'Re_ReadConsole' differ in signedness [-Wpointer-sign]
  Rinit.c:251:21: warning: assignment to 'int (*)(const char *, unsigned char *, int,  int)' from incompatible pointer type 'int (*)(const char *, char *, int,  int)' [-Wincompatible-pointer-types]
See 'C:/r_packages/pkgcheck/CRAN/rJava/rJava.Rcheck/00install.out' for details.
Found the following possibly unsafe calls:
File 'rJava/R/import.R':
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File 'rJava/R/jinit.R':
  unlockBinding(x, .env)
  unlockBinding(x, pe)
GNU make is a SystemRequirements.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  jri/src/Makefile
  jri/src/Makefile.win
  jri/src/win32/Makefile
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Note: information on .o files for x64 is not available
File 'C:/r_packages/pkgcheck/CRAN/rJava/rJava.Rcheck/rJava/libs/x64/rJava.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Package required but not available: 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'matrixStats', 'infotheo', 'rlang', 'profvis', 'mclust',
  'foreach', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RJDemetra', 'knitr', 'kableExtra', 'magrittr'

Packages suggested but not available for checking: 'rmarkdown', 'ggdemetra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RJDemetra', 'plotrix', 'XLConnect'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

Packages suggested but not available for checking: 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gplots', 'abind'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'madness', 'coda', 'mvtnorm'

Package suggested but not available for checking: 'FSAdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'chopsticks'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'rJava', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'IRdisplay'
Packages required but not available: 'jsonlite', 'checkmate'

Packages suggested but not available for checking: 'testthat', 'reshape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rJava', 'RUnit', 'rkafkajars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RKEAjars', 'rJava', 'tm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'downloader'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'XML', 'doParallel', 'foreach', 'gdata', 'RKEELjars',
  'RKEELdata', 'pmml', 'arules', 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppEigen', 'RcppGSL'

Package suggested but not available for checking: 'lhs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'maptools', 'ggplot2', 'sp', 'rgeos'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gmp'

Packages suggested but not available for checking:
  'Hmisc', 'Biobase', 'genefilter', 'golubEsets', 'chemometrics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'dplyr', 'glue', 'stringr', 'httr', 'jsonlite', 'magrittr',
  'tidyr', 'purrr', 'rlang', 'urltools'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'stringi', 'ggplot2', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ape', 'circlize', 'ComplexHeatmap', 'reshape2', 'dplyr',
  'factoextra', 'FactoMineR', 'ggpubr', 'magrittr', 'stringr'

Package suggested but not available for checking: 'viridis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.cache', 'broom', 'ggplot2', 'tibble', 'magrittr', 'tidyr',
  'dplyr', 'lubridate', 'highcharter', 'jsonlite', 'keyring', 'httr',
  'curl', 'PTXQC', 'purrr', 'stringr', 'urltools'

Packages suggested but not available for checking: 'lifecycle', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
':::' calls which should be '::':
  'stats:::dexp' 'stats:::dgamma' 'stats:::dweibull' 'stats:::pexp'
  'stats:::pgamma' 'stats:::pweibull' 'stats:::qexp' 'stats:::qgamma'
  'stats:::qweibull' 'stats:::rexp' 'stats:::rgamma' 'stats:::rweibull'
  See the note in ?`:::` about the use of this operator.
Package required but not available: 'plyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'cli', 'covr', 'crayon', 'fs', 'glue', 'knitr', 'magrittr', 'pillar',
  'rmarkdown', 'testthat', 'tibble', 'usethis', 'vctrs', 'withr'

Package which this enhances but not available for checking: 'winch'
Package unavailable to check Rd xrefs: 'cli'
Running examples in 'rlang-Ex.R' failed
The error most likely occurred in:

> ### Name: englue
> ### Title: Defuse function arguments with glue
> ### Aliases: englue
> 
> ### ** Examples
> 
> g <- function(var) englue("{{ var }}")
> g(cyl)
Error in `rlang::list2()`:
! Can't use `{{` symbols in LHS of `:=` if glue is not installed.
Backtrace:
    ▆
 1. ├─global g(cyl)
 2. │ ├─rlang::englue("{{ var }}")
 3. │ │ └─rlang::inject(rlang::list2(!!expr), caller_env())
 4. │ └─rlang::list2(`:=`("{{ var }}", NULL))
 5. └─rlang::abort(message = message)
Execution halted
Running 'sink.R'
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # Workaround for loadNamespace() failure on R 3.2
  > requireNamespace("rlang")
  Loading required namespace: rlang
  > 
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'data.table', 'BH'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'stringr', 'hwriter', 'jrc', 'plyr', 'R6'

Packages suggested but not available for checking:
  'spelling', 'magrittr', 'dplyr', 'tidyr', 'RColorBrewer', 'ggplot2',
  'testthat', 'httpuv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'statmod'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'copula'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppProgress', 'doParallel', 'foreach', 'coda', 'gtools',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'MCMCpack', 'rmarkdown', 'RColorBrewer', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'XML'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'emdbook'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'sp', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'covr'
Package required but not available: 'V8'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'ggplot2', 'stabledist', 'reshape2', 'plyr',
  'Rdpack', 'Rcpp'

Packages suggested but not available for checking:
  'elliptic', 'testthat', 'stringi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'sf'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstantools', 'forecast', 'rstan', 'sn', 'StanHeaders', 'BH',
  'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bitops', 'deldir', 'geometry', 'plyr', 'raster', 'rgeos', 'rgl',
  'sp', 'spatstat.geom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cowplot', 'patchwork', 'Rcpp', 'plyr', 'FNN', 'dplyr', 'ggrepel',
  'irlba', 'ica', 'Rtsne', 'ggplot2', 'riverplot', 'foreach',
  'doParallel', 'mclust', 'psych', 'RANN', 'uwot', 'rlang', 'hdf5r',
  'RcppArmadillo', 'RcppEigen', 'RcppProgress'

Packages suggested but not available for checking:
  'Seurat', 'knitr', 'reticulate', 'rmarkdown', 'testthat',
  'GenomicRanges', 'S4Vectors', 'IRanges', 'org.Hs.eg.db',
  'reactome.db', 'fgsea', 'AnnotationDbi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'XML', 'httpuv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rdpack', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'yaml', 'jsonlite', 'XML', 'data.table'

Packages suggested but not available for checking: 'testthat', 'stringdist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tseries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'stringr', 'magic', 'robustbase', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'rstackdeque'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'lme4'

Packages which this enhances but not available for checking:
  'SemiPar', 'lmerTest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'randomForest'
Packages required but not available:
  'magrittr', 'abind', 'doParallel', 'foreach', 'khroma', 'Rcpp',
  'scatterplot3d', 'RcppArmadillo'

Packages suggested but not available for checking:
  'spelling', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Luminescence', 'deSolve', 'khroma', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Luminescence', 'shiny', 'rhandsontable', 'data.table', 'googleVis',
  'shinydashboard', 'RCarb', 'markdown', 'readxl', 'DT', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'futile.logger'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GA', 'seriation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'metafor', 'abind'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
ma.filter: no visible global function definition for 'par'
ma.filter: no visible global function definition for 'lines'
ma.filter: no visible global function definition for 'abline'
qn: no visible global function definition for 'lm'
qn: no visible global function definition for 'var'
qn: no visible global function definition for 'resid'
ss.filter: no visible global function definition for 'smooth.spline'
ss.filter: no visible global function definition for 'par'
ss.filter: no visible global function definition for 'lines'
ss.filter: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline lines lm par resid smooth.spline var
Consider adding
  importFrom("graphics", "abline", "lines", "par")
  importFrom("stats", "lm", "resid", "smooth.spline", "var")
to your NAMESPACE file.
Packages required but not available: 'reticulate', 'ggplot2'

Packages suggested but not available for checking:
  'Seurat', 'readr', 'viridis', 'phateR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pryr', 'assertthat', 'rmarkdown', 'visNetwork'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'combinat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'inline'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'igraph', 'jsonlite', 'memoise', 'purrr'

Packages suggested but not available for checking:
  'ggraph', 'knitr', 'magrittr', 'mapview', 'rmarkdown', 'sf',
  'spelling', 'taxize', 'tidygraph', 'testthat', 'tibble',
  'USAboundaries', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geojsonio', 'geojsonlint', 'jsonlite', 'readr', 'sf', 'sp', 'V8'

Packages suggested but not available for checking:
  'knitr', 'magrittr', 'rgdal', 'rgeos', 'rmarkdown', 'testthat',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'httr', 'jsonlite', 'maps', 'dplyr', 'assertthat',
  'geojsonio', 'tidyr', 'purrr', 'sp', 'rgdal', 'digest', 'maptools',
  'sf'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'rlang'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'blob', 'DBI', 'hms', 'lubridate', 'Rcpp', 'rlang', 'plogr'

Packages suggested but not available for checking:
  'DBItest', 'readr', 'rprojroot', 'testthat', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tibble', 'ggplot2', 'lubridate', 'dplyr', 'zoo', 'tidyr', 'plyr',
  'raster', 'lazyeval', 'rlang'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bslib', 'evaluate', 'htmltools', 'jquerylib', 'jsonlite', 'knitr',
  'stringr', 'tinytex', 'xfun', 'yaml'

Packages suggested but not available for checking:
  'digest', 'dygraphs', 'fs', 'rsconnect', 'downlit', 'katex', 'sass',
  'shiny', 'testthat', 'tibble', 'tufte', 'vctrs', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'matrixcalc', 'msm', 'coda'

Package suggested but not available for checking: 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R.methodsS3', 'R.oo', 'R.utils'

Package suggested but not available for checking: 'SparseM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'purrr', 'dplyr', 'magrittr'

Package suggested but not available for checking: 'tidyverse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'chron', 'date', 'vars'

Packages suggested but not available for checking:
  'RgoogleMaps', 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'BH', 'RcppEigen',
  'StanHeaders'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ktaucenters', 'mvtnorm'

Packages suggested but not available for checking:
  'tclust', 'knitr', 'testthat', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rJava', 'yaml', 'ggplot2', 'gridExtra', 'reshape2', 'dplyr',
  'stringi', 'igraph', 'data.table'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'psych', 'RColorBrewer'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plotrix', 'ggplot2', 'lme4', 'merTools',
  'pwr', 'AICcmodavg', 'pals', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reshape', 'pander', 'caret'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'RcppParallel', 'dplyr', 'purrr',
  'tibble', 'tidyr', 'Formula', 'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'assertthat', 'rmarkdown'

Packages suggested but not available for checking:
  'dplyr', 'ggplot2', 'knitr', 'spelling', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'rmarkdown', 'bookdown', 'htmltools'

Packages suggested but not available for checking:
  'questionr', 'DT', 'palmerpenguins', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'knitr', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'knitr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'rmarkdown', 'pkgdown', 'covr', 'spelling',
  'dplyr', 'DT', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rmarkdown', 'bookdown'

Packages suggested but not available for checking:
  'testthat', 'covr', 'spelling', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rmarkdown'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lavaan', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'ggplot2'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'R.oo'
Packages required but not available:
  'rugarch', 'Rsolnp', 'zoo', 'xts', 'Bessel', 'ff', 'shape', 'pcaPP',
  'spd', 'Rcpp', 'corpcor', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'mltools', 'reticulate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plotrix', 'kknn', 'pls', 'mda', 'randomForest', 'adabag', 'party',
  'Cubist', 'kernlab', 'e1071', 'glmnet', 'xgboost'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rjson', 'R6', 'checkmate', 'Rcpp', 'rlang', 'rlist'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bigassertr', 'ff'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'BH'

Packages suggested but not available for checking: 'testthat', 'tgp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

Packages suggested but not available for checking: 'latticeExtra', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rmixmod', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'uuid', 'RCurl', 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'doParallel', 'foreach', 'RcppEigen', 'BH'

Packages suggested but not available for checking:
  'Rmixmod', 'blockcluster', 'testthat', 'RInside', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RMixtCompUtilities', 'RMixtCompIO', 'ggplot2', 'plotly', 'scales'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'Rmixmod', 'blockcluster', 'knitr', 'ClusVis',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plotly', 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'RMixtCompIO', 'Rmixmod', 'blockcluster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.pLGP_qvec: no visible global function definition for 'ppois'
.qLGP_pvec: no visible global function definition for 'qpois'
.rLGP.failsafe: no visible global function definition for 'runif'
.subdmg: no visible global function definition for 'dbinom'
dnegbin: no visible global function definition for 'dnbinom'
pLGP: no visible global function definition for 'ppois'
qLGP: no visible global function definition for 'qpois'
rLGP: no visible global function definition for 'rpois'
rLGP: no visible global function definition for 'rnorm'
rLGP: no visible global function definition for 'runif'
rbinegbin: no visible global function definition for 'rnbinom'
rmanaclash: no visible global function definition for 'rbinom'
rmanaclash: no visible global function definition for 'runif'
Undefined global functions or variables:
  dbinom dnbinom ppois qpois rbinom rnbinom rnorm rpois runif
Consider adding
  importFrom("stats", "dbinom", "dnbinom", "ppois", "qpois", "rbinom",
             "rnbinom", "rnorm", "rpois", "runif")
to your NAMESPACE file.
Packages required but not available: 'pracma', 'RSpectra'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RMOAjars', 'rJava'

Packages suggested but not available for checking: 'ff', 'recommenderlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'magrittr', 'glue', 'pryr', 'digest'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'readr', 'stringr',
  'tidyr', 'dplyr', 'Nozzle.R1'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ecr', 'ggplot2', 'reshape2', 'dplyr', 'cdata', 'plotly'

Packages suggested but not available for checking:
  'testthat', 'covr', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'pkgbuild'
Invalid NAMESPACE file, parsing gives:
Error in packageVersion("gmp"): there is no package called 'gmp'

See section 'Package namespaces' in the 'Writing R Extensions' manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'biglm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rms', 'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'Hmisc',
  'ggplot2', 'digest', 'knitr', 'loo', 'BH', 'RcppEigen', 'StanHeaders'

Package suggested but not available for checking: 'mice'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'fortunes'
Packages required but not available:
  'readr', 'purrr', 'magrittr', 'dplyr', 'tbl2xts',
  'PerformanceAnalytics', 'xts', 'zoo'

Packages suggested but not available for checking:
  'lubridate', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
rms.pval: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'ggplot2', 'SparseM', 'quantreg', 'polspline', 'multcomp',
  'htmlTable', 'htmltools', 'digest'

Packages suggested but not available for checking:
  'plotly', 'knitr', 'mice', 'rmsb'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Rata', 'reshape2', 'Rirt'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'psych', 'corpcor', 'doParallel', 'foreach'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
dWishartSpike: no visible global function definition for 'dnorm'
pWishartSpike: no visible global function definition for 'pnorm'
qWishartSpike: no visible global function definition for 'qnorm'
rWishartSpike: no visible global function definition for 'qnorm'
rmp: no visible global function definition for 'runif'
rtw: no visible global function definition for 'runif'
Undefined global functions or variables:
  dnorm pnorm qnorm runif
Consider adding
  importFrom("stats", "dnorm", "pnorm", "qnorm", "runif")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'bigmemory', 'RcppArmadillo', 'RcppEigen', 'RcppProgress',
  'BH'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'lubridate', 'magrittr', 'pdp', 'purrr',
  'ranger', 'stringr', 'strucchange', 'tibble', 'viridis'

Packages suggested but not available for checking: 'testthat', 'openair'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'psychotools', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DBI'

Packages suggested but not available for checking: 'testthat', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'dplyr', 'lubridate', 'stringr', 'purrr', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'igraph', 'hot.deck', 'PoiClaClu', 'glmnet'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'AnnotationHub', 'AnnotationFilter', 'ensembldb', 'circlize',
  'DESeq2', 'SummarizedExperiment', 'vsn', 'ComplexHeatmap',
  'matrixStats', 'ggpointdensity', 'ggrepel', 'gghighlight', 'ggplot2',
  'ggsci', 'cowplot', 'purrr', 'dplyr', 'stringr', 'tidyr', 'tibble',
  'RColorBrewer', 'tidyselect', 'magrittr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'recount3'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RRNA', 'circlize'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'here', 'httptest', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Packages suggested but not available for checking: 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'sf'

Packages suggested but not available for checking:
  'rgdal', 'knitr', 'testthat', 'httr', 'devtools',
  'rnaturalearthdata', 'rnaturalearthhires', 'raster', 'rgeos'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'RJSONIO'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'covr', 'httptest', 'testthat', 'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maps', 'RColorBrewer', 'abind', 'fields', 'tgp', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'progress'

Packages suggested but not available for checking: 'testthat', 'ape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gaston', 'RcppParallel'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gaston', 'qtl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'bit64'

Package which this enhances but not available for checking: 'pbdMPI'
Packages unavailable to check Rd xrefs: 'bit64', 'pbdMPI'
Packages required but not available: 'rJava', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'tm', 'stringi', 'scales', 'wordcloud', 'data.table',
  'quanteda', 'Rcpp', 'RcppEigen', 'RcppProgress'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'XML', 'plyr', 'reshape2', 'httr', 'uuid', 'dplyr',
  'lazyeval', 'tidyr', 'stringr', 'stringi', 'xml2', 'rlang'

Packages suggested but not available for checking:
  'spelling', 'rdflib', 'geiger', 'phytools', 'knitr', 'rfigshare',
  'knitcitations', 'testthat', 'rmarkdown', 'xslt', 'covr', 'taxalight'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'mvtnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Packages suggested but not available for checking:
  'covr', 'RUnit', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
well19937.validate: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Packages required but not available: 'survey', 'rvest', 'xml2', 'dplyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'covr', 'reportr', 'shades'

Packages which this enhances but not available for checking:
  'oro.nifti', 'tractor.base'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RNifti', 'ore', 'RcppEigen'

Packages suggested but not available for checking:
  'jpeg', 'loder', 'mmand', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'dplyr', 'fdrtool', 'gemtc', 'ggfittext', 'ggplot2',
  'ggpubr', 'ggrepel', 'knitr', 'mcmcplots', 'netmeta', 'pcnetmeta',
  'R2jags', 'reshape2', 'scales', 'writexl'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nnls', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'base64enc', 'doParallel', 'foreach', 'igraph', 'impute',
  'MassSpecWavelet', 'ptw', 'signal', 'speaq', 'XML', 'ggplot2',
  'plotly', 'plyr', 'minqa'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sigmoid', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'lubridate', 'dplyr', 'tidyr', 'tidyselect', 'ggplot2',
  'scales', 'XML', 'xml2', 'jsonlite', 'gridExtra', 'tibble',
  'isdparser', 'geonames', 'hoardr', 'data.table'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'taxize', 'ncdf4', 'raster', 'leaflet',
  'rgdal', 'purrr', 'ggmap', 'vcr', 'webmockr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rvest', 'stringr', 'fields', 'GEOmap', 'MBA', 'RCurl', 'XML', 'uuid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'data.table', 'sp', 'tibble', 'curl', 'raster',
  'rgdal', 'plyr', 'XML', 'magrittr'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'covr', 'knitr', 'markdown', 'rmarkdown',
  'RColorBrewer', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgdal', 'curl', 'jsonlite', 'lubridate', 'httr', 'zoo', 'ggmap',
  'ggplot2', 'sp', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'covr', 'lintr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'purrr', 'assertthat'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'lubridate', 'dplyr', 'tidyr', 'ggplot2', 'purrr', 'arrow',
  'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lubridate', 'data.table', 'htmlwidgets', 'lazyeval', 'viridisLite',
  'htmltools', 'jsonlite'

Packages suggested but not available for checking: 'reshape2', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'plyr', 'purrr', 'tibble', 'miniUI',
  'shiny', 'tidyr', 'rlang'

Packages suggested but not available for checking:
  'roxygen2', 'testthat', 'knitr', 'covr', 'rmarkdown', 'lintr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'scales', 'robustbase', 'magrittr', 'dplyr', 'ggplot2', 'plotly'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'withr', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rrcov', 'distr', 'distrEx', 'distrMod', 'RandVar', 'startupmsg'

Packages suggested but not available for checking: 'ROptEst', 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'blockmodels', 'ggplot2', 'GREMLINS', 'igraph', 'magrittr',
  'pammtools', 'partitions', 'purrr'

Packages suggested but not available for checking:
  'dplyr', 'forcats', 'knitr', 'patchwork', 'pbmcapply',
  'RColorBrewer', 'rmarkdown', 'spelling', 'testthat', 'tibble',
  'tidyr', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'robeth'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'pls', 'data.table', 'car', 'cvTools', 'e1071', 'fda',
  'rrcov', 'fpc', 'GGally', 'ggfortify', 'kernlab', 'mclust', 'tidyr',
  'robustbase', 'robustHD', 'VIM', 'zCompositions', 'reshape2', 'Rcpp',
  'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/imputation.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'robustbase', 'sfsmisc'
'library' or 'require' calls in package code:
  'robustbase' 'sfsmisc'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
.BuildPartial: no visible global function definition for 'as.formula'
.BuildPartial: no visible global function definition for 'residuals'
.PairwiseCorrelation : .Standardize : <anonymous>: no visible global
  function definition for 'na.omit'
.PairwiseCorrelation : .Standardize: no visible binding for global
  variable 'median'
.PairwiseCorrelation: no visible global function definition for
  'complete.cases'
.yw: no visible global function definition for 'toeplitz'
FastQn: no visible global function definition for 'median'
FastQn: no visible global function definition for 'mad'
fqn: no visible global function definition for 'median'
fqn: no visible global function definition for 'mad'
psdcor: no visible global function definition for 'posdefify'
psdcor: no visible global function definition for 'nearcor'
robar: no visible global function definition for 'frequency'
robcor: no visible global function definition for 'covMcd'
s_FastQn: no visible global function definition for 'median'
Undefined global functions or variables:
  as.formula complete.cases covMcd frequency mad median na.omit nearcor
  posdefify residuals toeplitz
Consider adding
  importFrom("stats", "as.formula", "complete.cases", "frequency", "mad",
             "median", "na.omit", "residuals", "toeplitz")
to your NAMESPACE file.
Packages unavailable to check Rd xrefs: 'robustbase', 'sfsmisc'
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'pracma', 'mvtnorm', 'cumstats'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'glmnet', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'distrMod', 'ROptEst', 'robustbase', 'evd', 'RobAStRDA', 'distr',
  'distrEx', 'RandVar', 'RobAStBase', 'startupmsg', 'actuar'

Packages suggested but not available for checking: 'RUnit', 'ismev'

Package which this enhances but not available for checking: 'fitdistrplus'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'doParallel', 'doRNG', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'lubridate', 'profvis', 'magrittr', 'dplyr', 'httr',
  'uuid'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'dplyr', 'jsonlite', 'leaflet', 'ggplot2', 'tidyr',
  'httpcache', 'tibble', 'mapedit', 'sf', 'rlang', 'purrr', 'stringr',
  'curl', 'data.table', 'tidyselect', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'ggplot2', 'reshape2', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'distr', 'affy', 'Biobase', 'BiocGenerics', 'beadarray', 'RobLox',
  'distrMod', 'RColorBrewer', 'AnnotationDbi'

Packages suggested but not available for checking:
  'affydata', 'hgu95av2cdf', 'beadarrayExampleData',
  'illuminaHumanv3.db'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'distrMod', 'RobAStBase', 'RColorBrewer', 'Biobase', 'RandVar',
  'distr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BayesTools', 'runjags', 'bridgesampling', 'rjags', 'coda', 'psych',
  'extraDistr', 'scales', 'callr', 'Rdpack', 'ggplot2'

Packages suggested but not available for checking:
  'rstan', 'metaBMA', 'testthat', 'vdiffr', 'knitr', 'rmarkdown',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'robustbase', 'quantreg', 'sn'

Packages suggested but not available for checking: 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/robmed-intro.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fastGHQuad', 'bbmle', 'VGAM', 'actuar', 'Rcpp', 'numDeriv',
  'doParallel', 'foreach', 'doRNG'

Packages suggested but not available for checking:
  'R.rsp', 'robustbase', 'forward'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'flexmix', 'robustbase', 'gtools', 'robust', 'lars', 'dplyr',
  'rlang', 'scales', 'gplots', 'RColorBrewer', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rdpack', 'gtools', 'robustbase', 'statmod', 'checkmate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'usethis', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'igraph', 'markovchain', 'tm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plm', 'dplyr', 'ggplot2', 'broom', 'tidyr', 'tibble'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'httr', 'spiderbar', 'future', 'future.apply', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'robustbase', 'quantreg', 'BB', 'rgenoud'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GSE', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'magrittr', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ROptRegTS', 'distr', 'RandVar', 'RobAStBase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
RobRSVD: no visible global function definition for 'median'
Undefined global functions or variables:
  median
Consider adding
  importFrom("stats", "median")
to your NAMESPACE file.
Package unavailable to check Rd xrefs: 'svdvisual'
Packages required but not available: 'glasso', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmlwidgets', 'jsonlite'

Packages suggested but not available for checking:
  'gapminder', 'palmerpenguins', 'knitr', 'rmarkdown', 'readr',
  'dplyr', 'tidyr', 'lubridate', 'stringr'

Package which this enhances but not available for checking: 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pyinit', 'rrcov', 'robustbase'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'survey'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'wbacon'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'clubSandwich', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Note: found 6 marked UTF-8 strings
Packages required but not available:
  'AER', 'doRNG', 'foreach', 'mathjaxr', 'pracma'

Packages suggested but not available for checking:
  'doFuture', 'doParallel', 'future', 'ggplot2', 'knitr', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'splusTimeDate', 'splusTimeSeries'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DEoptimR'

Packages suggested but not available for checking:
  'robust', 'fit.models', 'MPV', 'xtable', 'ggplot2', 'GGally',
  'RColorBrewer', 'reshape2', 'sfsmisc', 'catdata', 'doParallel',
  'foreach', 'skewt'

Packages which this enhances but not available for checking:
  'robustX', 'rrcov', 'matrixStats', 'quantreg', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'statip', 'rjags'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'Rcpp', 'numDeriv', 'mvtnorm', 'doParallel', 'foreach',
  'iterators', 'RcppArmadillo'

Package suggested but not available for checking: 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RobustGaSP', 'nloptr', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'glasso', 'caret', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mclust', 'Rsolnp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rrcov'

Packages suggested but not available for checking: 'mclust', 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'nloptr', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'perry', 'robustbase', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'lars', 'mvtnorm', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'lme4', 'ggplot2', 'robustbase', 'xtable', 'Rcpp', 'fastGHQuad',
  'RcppEigen', 'cubature'

Packages suggested but not available for checking:
  'digest', 'reshape2', 'microbenchmark', 'emmeans', 'estimability'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'matrixStats'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
aggregateRanks: no visible binding for global variable 'median'
aggregateRanks: no visible global function definition for 'pnorm'
betaScores: no visible global function definition for 'pbeta'
correctBetaPvaluesExact: no visible binding for global variable 'qbeta'
thresholdBetaScore: no visible global function definition for 'pbeta'
Undefined global functions or variables:
  median pbeta pnorm qbeta
Consider adding
  importFrom("stats", "median", "pbeta", "pnorm", "qbeta")
to your NAMESPACE file.
Package required but not available: 'kyotil'

Packages suggested but not available for checking:
  'RUnit', 'VGAM', 'copula', 'mvtnorm', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'gmp', 'iterpc', 'quadprog', 'igraph', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fit.models', 'robustbase', 'rrcov'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'coda', 'mvtnorm', 'pscl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'robustbase', 'robreg3S', 'GSE'

Package suggested but not available for checking: 'systemfit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'robustbase'

Package which this enhances but not available for checking: 'ICS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'tidyr', 'scales'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'mockery', 'mockr', 'knitr', 'rmarkdown', 'ROCR', 'pROC',
  'pracma'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vctrs'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'lme4', 'carData', 'kutils'

Packages suggested but not available for checking:
  'tables', 'Hmisc', 'car', 'mvtnorm', 'scatterplot3d', 'HH'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'R6', 'sodium'

Packages suggested but not available for checking:
  'covr', 'crayon', 'knitr', 'RMariaDB', 'testthat', 'rmarkdown',
  'RPostgres', 'RSQLite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'EBImage'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.tree', 'dplyr', 'DiagrammeR', 'DiagrammeRsvg', 'ggplot2',
  'glue', 'htmltools', 'markdown', 'purrr', 'yaml', 'yum'

Packages suggested but not available for checking:
  'covr', 'googlesheets4', 'haven', 'justifier', 'knitr', 'openxlsx',
  'preregr', 'rENA', 'readxl', 'rmarkdown', 'rstudioapi', 'testthat',
  'writexl', 'XLConnect'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'mime', 'progress'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'purrr', 'tibble', 'stringr', 'magrittr', 'rlang',
  'roxygen2', 'rex'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'glue', 'magrittr', 'purrr', 'rlang', 'stringr', 'tibble'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'np', 'moments', 'nor1mix', 'spatstat.geom', 'spatstat', 'pbivnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/rococo.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reportROC', 'pROC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gplots'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'poibin'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'svmpath'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiagrammeR', 'data.tree', 'ggplot2', 'flexsurv', 'Rcpp',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Packages suggested but not available for checking:
  'data.tree', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RODBC'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'numDeriv', 'quadprog', 'rootSolve', 'matrixcalc'

Package suggested but not available for checking: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'deSolve'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'xtable', 'rootSolve'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown', 'ggplot2', 'dplyr', 'tidyr',
  'covr', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RODBC'

Packages suggested but not available for checking:
  'RODBC', 'mlbench', 'verification', 'PASWR', 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fda.usc', 'robustbase', 'Rcpp', 'abind', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tinytest'
Packages required but not available:
  'ape', 'cli', 'fastmatch', 'matrixStats', 'Rdpack', 'Rfast',
  'TreeDist', 'TreeTools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'globalOptTests'

Package suggested but not available for checking: 'Rglpk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R.utils', 'Rglpk', 'ROI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROI'

Package suggested but not available for checking: 'Rglpk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'alabama'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'Rcplex', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'DEoptim', 'DEoptimR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI', 'ECOSolveR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'Rglpk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'kernlab', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'lpSolveAPI'

Package suggested but not available for checking: 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI'

Package suggested but not available for checking: 'ROI.plugin.glpk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'xmlrpc2', 'xml2'

Package suggested but not available for checking: 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'nloptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'optimx'

Packages suggested but not available for checking:
  'BB', 'ucminf', 'minqa', 'dfoptim', 'lbfgsb3c', 'lbfgs', 'subplex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI', 'osqp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI', 'Rcpp', 'checkmate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'ROI', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'ROI', 'scs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ROI', 'Rsymphony', 'slam'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'registry', 'slam'

Package suggested but not available for checking: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'magrittr', 'purrr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'bookdown', 'jsonlite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ldaPrototype', 'checkmate', 'data.table', 'lubridate', 'tosca'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'testthat', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'checkmate', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'zoo', 'roll', 'microbenchmark',
  'RcppParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'roloc', 'colorspace'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'colorspace'

Packages suggested but not available for checking: 'ggplot2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'evd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'gtools', 'zoo', 'pracma', 'colorspace', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'httr', 'stringr', 'RODBC', 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'dplyr', 'ggplot2', 'glue', 'purrr', 'readr',
  'reshape2', 'rlang', 'shiny', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'lazyeval', 'plotly', 'rmarkdown', 'usethis', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'httr', 'jsonlite', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'brew'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'Lmoments'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R.methodsS3'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'iterators', 'foreach', 'doParallel', 'inflection'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'animation', 'rARPACK', 'igraph'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glue', 'magrittr', 'getPass', 'rstudioapi', 'stringr', 'git2r',
  'RCurl', 'XML', 'cli', 'pingr', 'withr', 'rlang', 'fs', 'rvest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pkgbuild'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RJSONIO', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'RCurl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'magrittr', 'knitr', 'markdown', 'rmarkdown', 'prettydoc'

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Packages required but not available:
  'RSelenium', 'dplyr', 'haven', 'magrittr', 'readr', 'rio', 'stringr',
  'tibble', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fastdigest', 'CodeDepends', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'distr', 'distrEx', 'RandVar', 'evd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'distr', 'distrEx', 'distrMod', 'RandVar', 'RobAStBase', 'startupmsg'

Package suggested but not available for checking: 'RobLox'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'purrr', 'ggplot2', 'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ROptEstOld', 'distr', 'distrEx', 'RandVar'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rdpack', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DBI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crul', 'httr', 'fauxpas', 'jsonlite', 'xml2', 'tibble', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rcrossref', 'handlr', 'httpuv', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rglpk', 'ggplot2', 'gridExtra', 'hitandrun'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'tree'
Package unavailable to check Rd xrefs: 'pROC'
Packages required but not available:
  'car', 'diptest', 'ggplot2', 'ggrepel', 'gridExtra', 'lavaan',
  'lme4', 'multcompView', 'pander', 'plyr', 'psych', 'pwr',
  'rmdpartials', 'ufs', 'knitr', 'kableExtra', 'viridis'

Packages suggested but not available for checking:
  'effectsize', 'GGally', 'GPArotation', 'jmvcore', 'MBESS', 'rio',
  'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'abind', 'jpeg', 'png', 'sp', 'rgdal', 'rjson', 'plyr',
  'prettymapr'

Packages suggested but not available for checking:
  'cartography', 'raster', 'testthat', 'covr', 'withr', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mrfDepth', 'robustbase', 'pcaPP', 'rrcov', 'rrcovHD', 'elasticnet',
  'mvtnorm', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'rgl', 'viridisLite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'Rcpp', 'sphereplot', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'onion', 'orientlib', 'testthat', 'rmarkdown', 'rgl'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/rotations-intro.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GA', 'ftsa'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'assertthat', 'httr', 'jsonlite', 'rentrez', 'rncl'

Packages suggested but not available for checking:
  'knitr', 'MCMCglmm', 'phylobase', 'readxl', 'rmarkdown', 'RNeXML',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dint', 'R6'

Packages suggested but not available for checking:
  'covr', 'crayon', 'data.table', 'digest', 'rmarkdown', 'testthat',
  'uuid', 'ulid', 'zip'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.computeValueReduct: no visible global function definition for 'combn'
.findAllReductsFromCore: no visible global function definition for
  'combn'
.findFirstReductsFromCore: no visible global function definition for
  'combn'
.findSmallestReductFamilyFromCore: no visible global function
  definition for 'combn'
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'geometry', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'covr', 'httr', 'magick', 'tinytest', 'tuneR'
Package unavailable to check Rd xrefs: 'magick'
Skipping vignette re-building
Packages suggested but not available for checking:
  'gmp', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'httpuv', 'assertthat', 'uuid', 'reqres', 'stringi', 'digest'

Packages suggested but not available for checking:
  'testthat', 'covr', 'fiery'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'roxygen2'

Packages suggested but not available for checking: 'tinytest', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'desc', 'devtools', 'enc', 'rex', 'rlang', 'tibble', 'usethis',
  'withr'

Packages suggested but not available for checking: 'rstudioapi', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'brew', 'commonmark', 'desc', 'digest', 'knitr', 'pkgload', 'purrr',
  'R6', 'rlang', 'stringi', 'stringr', 'xml2', 'cpp11'

Packages suggested but not available for checking:
  'covr', 'devtools', 'rmarkdown', 'testthat', 'R.methodsS3', 'R.oo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'roxygen2'

Packages suggested but not available for checking:
  'testthat', 'tinytest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nortest', 'moments'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bnlearn', 'ggplot2', 'tidyr', 'ggpubr', 'rlang'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plotly', 'data.table', 'scales', 'shiny'

Packages suggested but not available for checking:
  'covr', 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'mnormt', 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ipmr', 'ggplot2', 'magrittr', 'mvtnorm', 'purrr', 'rlang',
  'rmarkdown', 'truncdist'

Packages suggested but not available for checking:
  'covr', 'knitr', 'maps', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'agricolae'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'picante', 'bipartite', 'coda', 'deSolve', 'fields', 'fpc',
  'glassoFast', 'igraph', 'mvMORPH', 'phytools', 'pspline', 'pvclust',
  'raster', 'Rmpfr', 'TESS'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'tkrplot', 'rgl', 'sp', 'geoR', 'RandomFields', 'akima', 'denstrip',
  'sm', 'maps', 'colorspace', 'ggplot2'
Packages required but not available: 'XML', 'xml2', 'Seurat', 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'earth'
Package unavailable to check Rd xrefs: 'earth'
Package unavailable to check Rd xrefs: 'tree'
evalMedian: no visible global function definition for 'xtabs'
evalMode: no visible global function definition for 'xtabs'
rpartScore: no visible global function definition for 'model.extract'
rpartScore: no visible global function definition for 'var'
rpartScore: no visible binding for global variable 'var'
splitAbs: no visible global function definition for 'xtabs'
Undefined global functions or variables:
  model.extract var xtabs
Consider adding
  importFrom("stats", "model.extract", "var", "xtabs")
to your NAMESPACE file.
Package suggested but not available for checking: 'RODBC'
Malformed Title field: should not end in a period.
'library' or 'require' call to 'RODBC' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
rpart.rules.push: no visible global function definition for 'sqlSave'
rpart.rules.table : <anonymous>: no visible global function definition
  for 'setNames'
rpart.subrules.table : <anonymous>: no visible global function
  definition for 'setNames'
Undefined global functions or variables:
  setNames sqlSave
Consider adding
  importFrom("stats", "setNames")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
Package required but not available: 'np'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'stringr', 'dplyr', 'combinat', 'xlsx'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'chk', 'lifecycle'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'rlang', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'minpack.lm', 'pracma', 'ptw'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RPEIF', 'RcppEigen'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'PerformanceAnalytics'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xts', 'zoo', 'RobStatTM'

Packages suggested but not available for checking:
  'R.rsp', 'testthat', 'PerformanceAnalytics'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'zoo', 'RPEIF', 'RPEGLMEN', 'RobStatTM'

Packages suggested but not available for checking:
  'testthat', 'R.rsp', 'PerformanceAnalytics'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'Rcpp', 'mvtnorm', 'lifecycle', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'ggplot2', 'reshape2', 'gridExtra',
  'numDeriv', 'knitr', 'mirt', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'Rcpp', 'doBy', 'geiger', 'phylolm', 'phytools',
  'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'crul', 'jsonlite', 'gridBase', 'png'

Packages suggested but not available for checking:
  'testthat', 'vcr', 'knitr', 'rmarkdown', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'httr', 'rjson', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Packages suggested but not available for checking:
  'testthat', 'htmltools', 'knitr', 'rmarkdown', 'devtools', 'dplyr',
  'data.table'

Package which this enhances but not available for checking: 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'crul', 'jsonlite', 'dplyr', 'plyr', 'lubridate',
  'reshape2', 'whisker', 'solrium'

Packages suggested but not available for checking:
  'xml2', 'knitr', 'rmarkdown', 'testthat', 'webmockr', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pcaPP', 'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rbacon', 'Rcpp', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'purrr', 'tidyr', 'knitr', 'testthat', 'covr',
  'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This is a wrapper around all the tests specified
  > # in the tests/testthat directory. These tests are visible
  > # to users and serve as small examples as well.
  > testthat::test_check("rpmodel")
  Error in loadNamespace(x) : there is no package called 'testthat'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > #' @import testthat
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'jsonlite', 'httr', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'xts', 'zoo'

Package suggested but not available for checking: 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'truncdist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RPostgreSQL', 'DBI', 'raster', 'rgeos', 'sp'

Packages suggested but not available for checking:
  'RPostgres', 'rgdal', 'wkb'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DBI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'blob', 'DBI', 'hms', 'lubridate', 'Rcpp', 'withr', 'plogr'

Packages suggested but not available for checking:
  'callr', 'covr', 'DBItest', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'ssanv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'limma', 'gam', 'gplots', 'ggplot2', 'Hmisc', 'Biobase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'foreach', 'iterators', 'bmp', 'jpeg', 'tiff', 'png',
  'imager', 'cobs', 'robustbase', 'SparseM', 'quantreg', 'timeDate'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gamlss.dist', 'lme4', 'mvtnorm', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'stringr', 'readr', 'dygraphs', 'tuneR'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'dplyr', 'DT', 'dygraphs', 'magrittr', 'stringr',
  'quantmod', 'xts', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'dplyr', 'igraph', 'lazyeval'

Packages suggested but not available for checking:
  'testthat', 'graph', 'Rgraphviz', 'knitr', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DBI', 'httr', 'openssl', 'jsonlite', 'stringi', 'Rcpp', 'purrr'

Packages suggested but not available for checking:
  'testthat', 'dplyr', 'dbplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'ggplot2', 'lazyeval', 'lubridate',
  'magrittr', 'tidyr'

Packages suggested but not available for checking:
  'flexsurv', 'flexsurvcure', 'knitr', 'rmarkdown', 'rms', 'testthat',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'plyr', 'stringi', 'stringr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'readr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringi'

Packages suggested but not available for checking: 'testthat', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'mvtnorm', 'viridis', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mlogit', 'vdiffr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'binr', 'ClustOfVar', 'ggplot2', 'gridExtra', 'plyr', 'sqldf',
  'stringr'

Package suggested but not available for checking: 'ISLR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'knitr', 'lifecycle', 'mockr', 'rmarkdown', 'testthat',
  'withr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'magrittr', 'rjson', 'jsonlite'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tableone'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'geomorph', 'igraph', 'ape', 'matlab', 'Gmedian'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'randomForest', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'pbapply'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'httr', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rvest', 'xml2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'Rdpack', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'magrittr', 'ggpubr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'sf', 'raster', 'stringr', 'rmarkdown', 'magrittr',
  'purrr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'spData', 'rstudioapi', 'bookdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'fastmap', 'rappdirs', 'glue', 'IRkernel', 'jsonlite',
  'rstudioapi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'wrapr', 'rquery', 'data.table'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DBI', 'RSQLite', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'itertools', 'iterators'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dplyr', 'ggplot2', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RPMG', 'RSEIS', 'GEOmap', 'MBA', 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'zoo'

Packages suggested but not available for checking:
  'tinytest', 'rgl', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'meteor', 'Rcpp'

Packages suggested but not available for checking: 'terra', 'limSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'wrapr'

Packages suggested but not available for checking:
  'DBI', 'RSQLite', 'rqdatatable', 'igraph', 'knitr', 'rmarkdown',
  'yaml', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'phylolm', 'ape'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'diagram'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lars', 'lassoshooting'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pbapply', 'warbleR', 'seewave', 'tuneR', 'NatureSounds'

Packages suggested but not available for checking:
  'knitr', 'vegan', 'dplyr', 'kableExtra', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RobStatTM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rrcov', 'robustbase', 'ThreeWay', 'nnls', 'pracma'

Package suggested but not available for checking: 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rrcov', 'robustbase', 'pls', 'spls', 'pcaPP', 'robustHD', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rrcov', 'robustbase', 'norm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'robustbase', 'mvtnorm', 'pcaPP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'rjson', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'registry', 'knitr', 'ggplot2', 'Rcpp'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crul', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RPostgreSQL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'readr', 'jsonlite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'directlabels'

Packages suggested but not available for checking:
  'data.table', 'gridExtra', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lhs', 'sensitivity', 'ggplot2', 'digest', 'xlsx', 'doSNOW', 'rJava',
  'gridExtra', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RColorBrewer'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mc2d', 'eha', 'msm', 'tkrplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'matrixcalc', 'gtools', 'RcppArmadillo'

Packages suggested but not available for checking:
  'bayesm', 'rrpack', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'rmarkdown', 'knitr'
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'zoo', 'biwavelet'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'httr', 'jsonlite', 'magrittr', 'tibble', 'tidyr', 'rlang',
  'purrr', 'glue', 'websocket', 'later', 'lifecycle'

Package suggested but not available for checking: 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'xml2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'vcr', 'ISOcodes', 'mockery'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'glmnet', 'lassoshooting', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'emmeans', 'ape', 'phytools', 'geiger', 'foreach', 'doParallel'

Packages suggested but not available for checking:
  'phangorn', 'rlist', 'scales', 'R.utils', 'RColorBrewer', 'car',
  'smatr', 'picante', 'vegan', 'ddpcr', 'geomorph', 'rmarkdown',
  'knitr', 'kableExtra', 'plotrix', 'pdftools', 'rgl', 'mvMORPH',
  'ggplot2', 'qpdf', 'inflection', 'Rvcg', 'Morpho', 'evolqg',
  'manipulate', 'webshot2', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ape', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'arm', 'coda', 'magic'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach', 'lme4'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'magrittr', 'dplyr', 'ggplot2', 'plotly', 'GGally'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'readr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixcalc', 'expm', 'ggplot2', 'magrittr', 'mvtnorm'

Packages suggested but not available for checking:
  'lazybar', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DEoptim', 'nloptr', 'abind'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'ggplot2', 'reshape2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.methodsS3', 'R.oo', 'R.utils', 'R.cache', 'digest'

Packages suggested but not available for checking:
  'markdown', 'knitr', 'R.devices', 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'ggplot2', 'officer', 'purrr', 'flextable', 'rvg',
  'magrittr', 'devEMF', 'moonBook', 'rmarkdown', 'shiny', 'editData',
  'shinyWidgets', 'ggpubr', 'rlang', 'readr', 'ztable'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sampling', 'samplingVarEst'

Packages suggested but not available for checking: 'markdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'simcdm', 'Rcpp', 'RcppArmadillo', 'rgen'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'robustbase'
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'robustbase' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
.computekappa: no visible global function definition for 'pnorm'
.computekappa: no visible global function definition for 'dnorm'
.initmethod : <anonymous>: no visible global function definition for
  'median'
.initmethod: no visible global function definition for 'model.matrix'
.mspe: no visible global function definition for 'rnorm'
.mspe : <anonymous>: no visible global function definition for 'rnorm'
makedata: no visible global function definition for 'rnorm'
makedata : addraneff: no visible global function definition for 'rnorm'
plot.meanssaemodel: no visible global function definition for 'par'
plot.meanssaemodel: no visible global function definition for 'lines'
plot.meanssaemodel: no visible global function definition for 'axis'
plot.meanssaemodel: no visible global function definition for 'grid'
plot.meanssaemodel: no visible global function definition for 'box'
plot.meanssaemodel: no visible global function definition for 'legend'
plot.meanssaemodel: no visible global function definition for 'arrows'
saemodel: no visible global function definition for 'model.frame'
saemodel: no visible global function definition for 'model.response'
saemodel: no visible global function definition for 'model.matrix'
summary.fitsaemodel: no visible global function definition for 'pt'
summary.fitsaemodel: no visible global function definition for
  'printCoefmat'
Undefined global functions or variables:
  arrows axis box dnorm grid legend lines median model.frame
  model.matrix model.response par pnorm printCoefmat pt rnorm
Consider adding
  importFrom("graphics", "arrows", "axis", "box", "grid", "legend",
             "lines", "par")
  importFrom("stats", "dnorm", "median", "model.frame", "model.matrix",
             "model.response", "pnorm", "printCoefmat", "pt", "rnorm")
to your NAMESPACE file.
Error(s) in re-building vignettes:
--- re-building 'rsae.Rnw' using Sweave
Loading required package: robustbase
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'robustbase'

Error: processing vignette 'rsae.Rnw' failed with diagnostics:
 chunk 26 
Error in .initmethod(model, control$init) : 
  You cannot use 'lts' or 's', because the 
 'robustbase' package is not installed! 


--- failed re-building 'rsae.Rnw'

SUMMARY: processing the following file failed:
  'rsae.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'DALEX', 'dendextend', 'ggplot2', 'ggpubr', 'ingredients', 'sets'

Packages suggested but not available for checking:
  'gbm', 'knitr', 'pander', 'randomForest', 'rmarkdown', 'spelling',
  'testthat', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'generics', 'sf', 'raster', 'terra', 'stars', 'rgdal', 'stringr',
  'rlang', 'tibble', 'processx', 'rvest'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gstat', 'shapefiles', 'plyr', 'rgdal', 'stringr', 'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'maptools', 'rgeos'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'lubridate', 'ggplot2', 'hydroGOF', 'cvTools', 'mblm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SNPRelate', 'gdsfmt'

Packages suggested but not available for checking:
  'Rcpp', 'data.table', 'shiny', 'plotly', 'httr', 'biomaRt',
  'ggplot2', 'sp', 'packcircles', 'raster', 'mapplots', 'spdep',
  'rgdal', 'gdalUtils', 'rworldmap', 'doParallel', 'foreach', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ellipsis', 'furrr', 'generics', 'lifecycle', 'purrr',
  'rlang', 'slider', 'tibble', 'tidyr', 'tidyselect', 'vctrs'

Packages suggested but not available for checking:
  'broom', 'covr', 'ggplot2', 'knitr', 'modeldata', 'recipes',
  'rmarkdown', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'lavaan', 'ggplot2', 'plyr', 'RColorBrewer', 'aplpack'

Packages suggested but not available for checking:
  'fields', 'rgl', 'qgraph', 'tkrplot', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'arules'

Package suggested but not available for checking: 'MultiOrd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'curl', 'httr', 'leafem', 'leaflet', 'rjson', 'rvest', 'tmap',
  'xml2', 'zip', 'sp', 'Rdpack', 'fields', 'calendR', 'raster', 'sf',
  'stars', 'terra'

Packages suggested but not available for checking:
  'rgdal', 'knitr', 'rmarkdown', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rgdal', 'sp'

VignetteBuilder package required for checking but not installed: 'knitr'
stripslash: no visible global function definition for 'tail'
Undefined global functions or variables:
  tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.
Packages required but not available:
  'httr', 'jsonlite', 'xml2', 'whisker', 'data.table'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'xml2', 'reshape2', 'lubridate', 'tidyr',
  'purrr', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'testthat', 'devtools', 'rstudioapi', 'processx'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/rscala.Rnw'
(Is a VignetteBuilder field missing?)
'LazyData' is specified without a 'data' directory
Files named as vignettes but with no recognized vignette engine:
   'vignettes/rscala.Rnw'
(Is a VignetteBuilder field missing?)
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > if ( ! isTRUE(tryCatch({rscala::scalaConfig(reconfig="offline")}, error=function(e) TRUE)) ) {
  +   library(testthat)
  +   library(rscala)
  +   test_check("rscala")
  + }
  
  Searching the system for Java.
    Failure with rscala home directory.
    Failure with JAVACMD environment variable.
    Failure with JAVA_HOME environment variable.
    Success with PATH environment variable.
    ... querying Java specifics.
  
  Searching the system for Scala.
    Failure with rscala home directory.
    Failure with SCALACMD environment variable.
    Failure with SCALA_HOME environment variable.
    Failure with PATH environment variable.
    Success with rscala package directory.
    ... querying Scala specifics.
  
  Searching the system for SBT.
    Failure with rscala home directory.
    Failure with SBTCMD environment variable.
    Failure with SBT_HOME environment variable.
    Failure with PATH environment variable.
    Failure with rscala package directory.
    Failure with rscala temporary directory.
  
  
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'rJava', 'shiny', 'shinycssloaders', 'shinyjs', 'Metrics', 'ggplot2',
  'gridExtra'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'formatR', 'highlight', 'igraph', 'tm'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'igraph', 'knitr', 'rmarkdown', 'stringr', 'seqinr'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'checkmate'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rjson', 'rsconnect', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'curl', 'digest', 'jsonlite', 'openssl', 'packrat', 'rstudioapi',
  'yaml'

Packages suggested but not available for checking:
  'RCurl', 'callr', 'httpuv', 'knitr', 'plumber', 'reticulate',
  'rmarkdown', 'shiny', 'sourcetools', 'testthat', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'httr', 'jsonlite', 'plyr', 'tidyr', 'dplyr', 'glue'

Packages suggested but not available for checking:
  'xml2', 'rvest', 'testthat', 'jpeg', 'knitr', 'rmarkdown', 'purrr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'httr', 'jsonlite', 'lazyeval', 'magrittr', 'tidyselect',
  'tidyr', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vctrs', 'dplyr', 'forcats', 'scales', 'stringr', 'rlang', 'purrr',
  'magrittr', 'tidyselect', 'tibble', 'RJSONIO', 'XML', 'ggplot2',
  'ggpolypath', 'reshape', 'glmnet', 'FactoMineR', 'princurve',
  'nloptr', 'sqldf', 'randomcoloR', 'labelled', 'kknn', 'e1071', 'gbm',
  'randomForest', 'neuralnet'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
convexhull: no visible global function definition for 'chull'
convexhull: no visible global function definition for 'rnorm'
drawcompletegraph: no visible global function definition for 'segments'
getbag: no visible global function definition for 'chull'
getbag: no visible global function definition for 'polygon'
getbag: no visible global function definition for 'points'
inflate: no visible global function definition for 'rnorm'
rsmed: no visible global function definition for 'runif'
rsplot: no visible global function definition for 'chull'
rsplot: no visible global function definition for 'polygon'
rsplot: no visible global function definition for 'points'
rsrings: no visible global function definition for 'chull'
rsrings: no visible global function definition for 'polygon'
rsrings: no visible global function definition for 'points'
rstinterval: no visible global function definition for 'runif'
rstinterval: no visible global function definition for 'rnorm'
rstinterval: no visible global function definition for 'chull'
rstinterval: no visible global function definition for 'polygon'
Undefined global functions or variables:
  chull points polygon rnorm runif segments
Consider adding
  importFrom("grDevices", "chull")
  importFrom("graphics", "points", "polygon", "segments")
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Packages required but not available:
  'testthat', 'shiny', 'shinyWidgets', 'keys'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'XML', 'httr', 'plyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'roxygen2', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'hommel', 'ggplot2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sybil', 'RBGL', 'graph'

Package suggested but not available for checking: 'Rgraphviz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RPMG', 'Rwave'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'XML', 'caTools', 'openssl', 'httr', 'wdman', 'binman'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'Rcompression', 'covr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lavaan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'stringr', 'openNLP', 'NLP'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'RSclient'
GNU make is a SystemRequirements.
Note: information on .o files for x64 is not available
File 'C:/r_packages/pkgcheck/CRAN/Rserve/Rserve.Rcheck/Rserve/libs/x64/Rserve.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'rand', possibly from 'rand' (C)
  Found 'srand', possibly from 'srand' (C)
File 'Rserve/libs/x64/Rserve.dll':
  Found non-API calls to R: 'R_Interactive', 'R_Visible',
    'Rf_initialize_R', 'setup_Rmainloop'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
Packages required but not available:
  'dplyr', 'rlang', 'igraph', 'purrr', 'tibble', 'minpack.lm',
  'magrittr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyr', 'ggplot2', 'ggraph', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
addNoisyCopies: no visible global function definition for 'rnorm'
eta: no visible global function definition for 'var'
gaussClassifier: no visible global function definition for 'runif'
getSigma: no visible global function definition for 'sd'
getSigma: no visible binding for global variable 'sd'
sfaClassify: no visible global function definition for 'rainbow'
sfaClassify: no visible global function definition for 'par'
sfaClassify: no visible global function definition for 'points'
sfaClassify: no visible global function definition for 'lines'
Undefined global functions or variables:
  lines par points rainbow rnorm runif sd var
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "lines", "par", "points")
  importFrom("stats", "rnorm", "runif", "sd", "var")
to your NAMESPACE file.
Package required but not available: 'fda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bookdown', 'knitr', 'magrittr', 'rlang', 'usethis', 'yaml',
  'ymlthis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'png', 'stringi', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'MCMCpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'sn', 'VGAM', 'evd', 'RSQLite', 'DBI', 'foreach',
  'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'zoo', 'tibble', 'dplyr', 'ggplot2', 'magrittr'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'xtable'

Package suggested but not available for checking: 'network'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jpeg', 'fields', 'RANN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'generics', 'ggridges', 'ggplot2', 'knitr', 'lifecycle',
  'rlang', 'scales'

Packages suggested but not available for checking:
  'covr', 'devtools', 'dplyr', 'eha', 'rmarkdown', 'rstpm2',
  'testthat', 'usethis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'stringr', 'dplyr', 'lubridate'

Packages suggested but not available for checking:
  'aire.zmvm', 'testthat', 'covr', 'knitr', 'rmarkdown', 'ggplot2',
  'maps', 'mapproj', 'sp', 'ggmap', 'gstat', 'zoo', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'rgdal', 'rasterVis', 'ncdf4', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'httr', 'plyr', 'base64enc', 'digest', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'flexclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rstudioapi', 'berryFunctions'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'edfReader', 'jsonlite', 'ggplot2', 'signal', 'phonTools', 'psd'

Packages suggested but not available for checking: 'testthat', 'keras'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'stringi', 'plyr', 'magrittr', 'tokenizers'

Packages suggested but not available for checking:
  'dplyr', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'whisker'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gridExtra', 'dplyr'

Package suggested but not available for checking: 'mlxR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'estimability'

Packages suggested but not available for checking:
  'emmeans', 'Vdgraph', 'conf.design', 'DoE.base', 'FrF2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'scatterplot3d', 'NeuralNetTools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'stringr', 'crul', 'data.table', 'jsonlite', 'httr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'markdown', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'mime', 'plyr'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'memoise'

Packages suggested but not available for checking: 'testthat', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'truncnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'validate', 'lintools'

Packages suggested but not available for checking: 'editrules', 'tinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'spatialEco', 'geosphere', 'tigris', 'raster', 'sp',
  'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sparklyr', 'h2o'

Packages suggested but not available for checking: 'dplyr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'MatrixExtra', 'Rcpp', 'data.table', 'float', 'RhpcBLASctl', 'lgr',
  'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking:
  'R.rsp', 'rmarkdown', 'INLA', 'testthat', 'rgdal', 'gridExtra',
  'ggplot2', 'splancs', 'fields', 'optimParallel'

VignetteBuilder package required for checking but not installed: 'R.rsp'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'plyr', 'httr', 'jsonlite', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'foreach', 'doParallel', 'igraph', 'tidyr', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'checkmate', 'Rdpack'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'tibble', 'tidyr', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'config', 'golem', 'shiny', 'RSQLite', 'DT', 'shinyFiles', 'fs',
  'shinyAce', 'shinyjqui', 'shinydashboard', 'disk.frame',
  'data.table', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'blob', 'DBI', 'memoise', 'pkgconfig', 'Rcpp', 'plogr'

Packages suggested but not available for checking:
  'callr', 'DBItest', 'gert', 'gh', 'knitr', 'rmarkdown', 'hms',
  'rvest', 'testthat', 'xml2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'stringi'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lgr', 'R6', 'DBI', 'RSQLite', 'knitr'

Packages suggested but not available for checking:
  'rmarkdown', 'dplyr', 'testthat', 'covr', 'lintr', 'pkgdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SIS', 'GMMAT'

Package suggested but not available for checking: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ncdf4', 'zoo', 'stringr', 'EcoHydRology', 'dplyr', 'gsubfn', 'yaml',
  'mise', 'reshape2', 'qmap', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lme4', 'Deriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'LearnBayes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'svd', 'forecast'

Packages suggested but not available for checking:
  'testthat', 'RSpectra', 'PRIMME'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'gridExtra'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'kernlab', 'quadprog', 'dplyr', 'tidyr', 'ggplot2',
  'reshape2', 'scales', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'SparseM', 'numDeriv', 'LiblineaR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'R6'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'crayon', 'magrittr', 'jsonlite', 'lifecycle'

Packages suggested but not available for checking:
  'covr', 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'bayesplot', 'ggplot2', 'lme4', 'loo', 'rstan', 'rstantools',
  'shinystan', 'RcppParallel', 'StanHeaders', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
  'betareg', 'data.table', 'digest', 'gridExtra', 'HSAUR3', 'knitr',
  'rmarkdown', 'roxygen2', 'StanHeaders', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rstan', 'rstantools', 'magrittr', 'dplyr', 'tidyr', 'purrr',
  'ggplot2', 'StanHeaders', 'BH', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'StanHeaders', 'ggplot2', 'inline', 'gridExtra', 'Rcpp',
  'RcppParallel', 'loo', 'pkgbuild', 'RcppEigen', 'BH'

Packages suggested but not available for checking:
  'RUnit', 'RcppEigen', 'BH', 'shinystan', 'bayesplot', 'rmarkdown',
  'rstantools', 'rstudioapi', 'knitr', 'V8'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'desc', 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking:
  'rstan', 'usethis', 'testthat', 'knitr', 'pkgbuild', 'pkgload',
  'roxygen2', 'rmarkdown', 'rstudioapi'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'tidyr', 'purrr', 'broom', 'rlang', 'tibble', 'dplyr', 'magrittr',
  'corrplot', 'tidyselect', 'car', 'generics'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggpubr', 'emmeans', 'coin', 'testthat',
  'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'reticulate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Errors in running code in vignettes:
when running code in 'rstiefel.Rnw'
Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
Calls: <Anonymous> -> loadVignetteBuilder
Execution halted

... incomplete output.  Crash?

  'rstiefel.Rnw'... failed to complete the test
Packages required but not available: 'httr', 'jsonlite', 'curl', 'keyring'

Packages suggested but not available for checking:
  'knitr', 'rstudioapi', 'dplyr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'raster', 'caret', 'sp', 'sf', 'terra', 'rgdal', 'XML', 'dplyr',
  'ggplot2', 'reshape2', 'lifecycle', 'exactextractr', 'doParallel',
  'foreach', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'randomForest', 'kernlab', 'e1071', 'gridExtra', 'pls', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'data.table', 'xml2', 'xslt', 'units', 'stringi'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'bbmle', 'fastGHQuad', 'deSolve', 'RcppArmadillo', 'BH'

Packages suggested but not available for checking:
  'eha', 'testthat', 'ggplot2', 'readstata13', 'mstate', 'scales',
  'survPen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bitops', 'dplyr', 'geosphere', 'ggplot2', 'ggrepel', 'googleway',
  'httr', 'httpuv', 'magrittr', 'plyr', 'RCurl', 'rvest', 'tidyr',
  'XML', 'xml2', 'purrr', 'tibble', 'V8'

Package suggested but not available for checking: 'ggmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'RCurl', 'httr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'clipr'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'cli', 'dplyr', 'fs', 'jsonlite', 'purrr', 'rappdirs', 'rlang',
  'rstudioapi', 'rvest', 'tibble'

Packages suggested but not available for checking:
  'covr', 'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plotly', 'rsm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'gdata'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'epitools', 'epiR', 'mc2d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'colorspace', 'inlmisc', 'MBA', 'raster', 'rgdal', 'rgeos', 'sp'

Packages suggested but not available for checking:
  'dichromat', 'leaflet', 'rgl', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'matrixStats', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'microbenchmark', 'pcaMethods'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'ggplot2', 'testthat'
Package unavailable to check Rd xrefs: 'ggplot2'
Running examples in 'rsvd-Ex.R' failed
The error most likely occurred in:

> ### Name: rpca
> ### Title: Randomized principal component analysis (rpca).
> ### Aliases: rpca
> 
> ### ** Examples
> 
> 
> library('rsvd')
> #
> # Load Edgar Anderson's Iris Data
> #
> data('iris')
> 
> #
> # log transform
> #
> log.iris <- log( iris[ , 1:4] )
> iris.species <- iris[ , 5]
> 
> #
> # Perform rPCA and compute only the first two PCs
> #
> iris.rpca <- rpca(log.iris, k=2)
> summary(iris.rpca) # Summary
                         PC1   PC2
Explained variance     2.933 0.907
Standard deviations    1.712 0.952
Proportion of variance 0.733 0.227
Cumulative proportion  0.733 0.960
> print(iris.rpca) # Prints the rotations
Standard deviations:
[1] 1.712 0.952

Eigenvalues:
[1] 2.933 0.907

Rotation:
                PC1    PC2
Sepal.Length -0.504 -0.455
Sepal.Width   0.302 -0.889
Petal.Length -0.577 -0.034
Petal.Width  -0.567 -0.035
> 
> #
> # Use rPCA to compute all PCs, similar to \code{prcomp}
> #
> iris.rpca <- rpca(log.iris)
> summary(iris.rpca) # Summary
                         PC1   PC2   PC3   PC4
Explained variance     2.933 0.907 0.133 0.027
Standard deviations    1.712 0.952 0.365 0.166
Proportion of variance 0.733 0.227 0.033 0.007
Cumulative proportion  0.733 0.960 0.993 1.000
> print(iris.rpca) # Prints the rotations
Standard deviations:
[1] 1.712 0.952 0.365 0.166

Eigenvalues:
[1] 2.933 0.907 0.133 0.027

Rotation:
                PC1    PC2    PC3    PC4
Sepal.Length  0.504 -0.455  0.709  0.191
Sepal.Width  -0.302 -0.889 -0.331 -0.091
Petal.Length  0.577 -0.034 -0.219 -0.786
Petal.Width   0.567 -0.035 -0.583  0.580
> plot(iris.rpca) # Produce screeplot, variable and individuls factor maps.
Error: The package 'ggplot2' is needed for this function to work. Please install it.
Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'magick', 'rmarkdown', 'spelling', 'svglite',
  'webp'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'rsvg-Ex.R' failed
The error most likely occurred in:

> ### Name: rsvg
> ### Title: Render SVG into Bitmap
> ### Aliases: rsvg rsvg_raw rsvg_webp rsvg_png rsvg_pdf rsvg_svg rsvg_ps
> ###   rsvg_eps
> 
> ### ** Examples
> 
> # create some svg
> options(example.ask=FALSE)
> tmp <- tempfile()
> svglite::svglite(tmp, width = 10, height = 7)
Error in loadNamespace(x) : there is no package called 'svglite'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'engine.R'
  Comparing 'engine.Rout' to 'engine.Rout.save' ...4d3
< Linking to librsvg 2.48.8
  Running 'spelling.R'
Running the tests in 'tests/spelling.R' failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = FALSE)
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Packages required but not available: 'ggplot2', 'dplyr', 'downloader'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages which this enhances but not available for checking:
  'slam', 'SparseM'
Packages unavailable to check Rd xrefs: 'lpSolve', 'Rglpk'
Packages required but not available:
  'DBI', 'RSQLite', 'raster', 'gtools', 'lifecycle'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'ggplot2', 'Rcpp', 'rgdal', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'tidyselect', 'stringi', 'digest', 'rlang', 'magrittr',
  'tokenbrowser', 'base64enc', 'png', 'data.table'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'partitions', 'aster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'htmltools'

Packages suggested but not available for checking:
  'dplyr', 'tibble', 'tidyr', 'testthat', 'xml2', 'knitr', 'rmarkdown',
  'flextable', 'officer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixStats', 'vegan', 'Rcpp', 'testthat'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
barplot.rtconnect: no visible global function definition for 'rainbow'
barplot.rtconnect: no visible global function definition for 'text'
plot.rtconnect: no visible global function definition for 'par'
plot.rtconnect: no visible global function definition for 'axis.Date'
rtconnect: no visible global function definition for 'read.table'
Undefined global functions or variables:
  axis.Date par rainbow read.table text
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "axis.Date", "par", "text")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Packages required but not available:
  'jsonlite', 'htmlwidgets', 'geojsonsf', 'data.table', 'purrr'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'knitr', 'covr', 'dplyr', 'sf', 'rgeos',
  'rnaturalearth'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'tseries'
Running 'test-EPD.R'
  Running 'test-EUstockmarket.R'
Running the tests in 'tests/test-EUstockmarket.R' failed.
Complete output:
  > data(EuStockMarkets)
  > 
  > 
  > library(RTDE)
  Loading required package: parallel
  > library(tseries)
  Error in library(tseries) : there is no package called 'tseries'
  Execution halted
Packages required but not available: 'evd', 'msm', 'gsl', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'glba', 'knitr', 'rmarkdown', 'dplyr', 'tidyr', 'purrr',
  'latticeExtra', 'binom', 'RWiener'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readr', 'httr', 'dplyr', 'jsonlite', 'RcppMsgPack', 'urltools',
  'uuid', 'purrr'

Packages suggested but not available for checking:
  'testthat', 'mockery', 'openssl', 'webmockr', 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'RCurl', 'plyr', 'gdata'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tm', 'NLP', 'slam', 'FactoMineR', 'explor', 'testthat', 'wordcloud',
  'igraph', 'stringi', 'crayon', 'SnowballC', 'tm.plugin.factiva',
  'tm.plugin.lexisnexis', 'tm.plugin.europresse', 'tm.plugin.alceste'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'rmarkdown', 'bookdown', 'DT', 'ggplot2', 'xfun'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'rNOMADS'
Package required but not available: 'rlang'

Packages suggested but not available for checking:
  'covr', 'testthat', 'spelling', 'lifecycle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringb', 'R6', 'hellno', 'magrittr', 'Rcpp', 'digest', 'RSQLite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SparseM', 'randomForest', 'tree', 'tm', 'e1071', 'ipred', 'caTools',
  'glmnet', 'tau'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
plotGLCM: no visible global function definition for 'points'
Undefined global functions or variables:
  points
Consider adding
  importFrom("graphics", "points")
to your NAMESPACE file.
Packages required but not available: 'R.oo', 'R.methodsS3'

Packages suggested but not available for checking:
  'ggplot2', 'xtable', 'gsubfn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'brnn', 'knitr', 'dplyr', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'dplyr', 'httr2', 'purrr', 'snakecase', 'stringr', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'logger', 'dplyr'

Packages suggested but not available for checking:
  'badger', 'ggplot2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'rmarkdown', 'tinytex', 'xfun', 'yaml'

Packages suggested but not available for checking:
  'covr', 'bookdown', 'testit', 'testthat', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'glue', 'magrittr', 'purrr', 'readr', 'rlang',
  'stringr', 'tibble', 'tidymv', 'tidyr', 'tidyverse', 'tidyselect'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'abind', 'chk', 'dttr2', 'tibble'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'scales', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DataCombine', 'DescTools', 'deSolve', 'dplyr', 'ggplot2',
  'gridExtra', 'interactions', 'lme4', 'mclust', 'plyr', 'zoo'

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'sjmisc', 'sjPlot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GenomicRanges', 'GenomeInfoDb', 'e1071', 'reshape2', 'ggplot2',
  'TailRank', 'JuliaCall', 'IRanges', 'qpdf'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown', 'Gviz', 'rtracklayer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'mvtnorm', 'plyr', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'inline'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fabletools', 'feasts', 'ggplot2', 'httr', 'lifecycle',
  'jsonlite', 'lubridate', 'magrittr', 'plotly', 'purrr', 'RCurl',
  'readr', 'rlang', 'stringr', 'tibble', 'tidyquant', 'tidyr',
  'timetk', 'tsibble', 'xts', 'zoo', 'cli', 'glue', 'withr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'lpSolve', 'PerformanceAnalytics', 'Quandl',
  'rgdal', 'rugarch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'alphashape3d', 'doSNOW', 'foreach', 'Rcpp',
  'RcppProgress', 'RcppHNSW', 'rgeos', 'rgl', 'sp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'coda', 'data.table', 'loo', 'Ryacas', 'stringr', 'truncnorm'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'dplyr', 'getPass', 'glue', 'httr', 'keyring', 'magrittr',
  'purrr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RPMG', 'GEOmap', 'RSEIS', 'splancs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'gstat'

Packages suggested but not available for checking:
  'intamap', 'rgeos', 'spacetime', 'data.table', 'rgdal', 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'jsonlite', 'rstudioapi'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'Hmisc', 'openxlsx', 'pbapply', 'randomForest', 'raster',
  'readxl', 'rgeos', 'rjson', 'sp'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'future', 'future.apply', 'Rcpp'

Packages suggested but not available for checking:
  'data.table', 'ggplot2', 'gridExtra', 'knitr', 'quantmod',
  'rmarkdown', 'testthat', 'vars', 'xts', 'zoo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'stringr'

Packages suggested but not available for checking:
  'askpass', 'knitr', 'rmarkdown', 'testthat', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'jsonlite', 'xml2', 'rvest', 'jpeg', 'purrr',
  'ggplot2', 'memoise', 'tibble', 'tidyr', 'downloader'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'leaflet', 'showtext',
  'sysfonts', 'trekfont', 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'fftwtools', 'magrittr', 'matrixStats', 'ggplot2',
  'RcppArmadillo'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'dplyr', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'geometry'
Running 'attributes.R'
  Comparing 'attributes.Rout' to 'attributes.Rout.save' ... OK
  Running 'basic.R'
  Comparing 'basic.Rout' to 'basic.Rout.save' ... OK
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'
Packages required but not available: 'Rcpp', 'RcppParallel'

Packages suggested but not available for checking:
  'covr', 'knitr', 'R.rsp', 'rmarkdown', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'lpSolve', 'lpSolveAPI', 'Rfast', 'RcppAlgos', 'caret'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'e1071', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'tidyr', 'jsonlite', 'curl'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'Rcpp', 'RcppParallel', 'rstan', 'rstantools', 'sf',
  'lubridate', 'BH', 'RcppEigen', 'StanHeaders'

Packages suggested but not available for checking: 'cmdstanr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'quantmod', 'zoo', 'Quandl', 'anytime', 'data.table',
  'mongolite', 'brotli', 'curl'

Package suggested but not available for checking: 'RQuantLib'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'irlba', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R6'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xts', 'quantmod', 'zoo', 'RColorBrewer'

Package suggested but not available for checking: 'TTR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'terra', 'xts', 'sp', 'zoo', 'RCurl', 'raster'

Packages suggested but not available for checking: 'digest', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'RStoolbox', 'moveVis', 'raster', 'dplyr', 'pbapply',
  'sp', 'sf', 'tidyr', 'forcats', 'assertthat', 'magrittr'

Package suggested but not available for checking: 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'jsonlite', 'httr', 'digest', 'base64enc', 'withr'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown', 'testthat', 'lubridate', 'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'shiny', 'shinydashboard', 'rmarkdown', 'DT',
  'shinyBS', 'shinyjs', 'ggthemes', 'plotly', 'rlang', 'FSelector',
  'officer', 'colourpicker', 'tidyr', 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'magrittr', 'tibble', 'progress', 'Rcpp',
  'httpuv'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'magick', 'openssl', 'readr', 'rmarkdown',
  'testthat', 'webshot', 'covr', 'igraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'glue', 'httr', 'jsonlite', 'lubridate',
  'purrr', 'rlang', 'tibble', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'gtools', 'magrittr', 'Rcpp', 'readr', 'rlang', 'stringr',
  'tibble', 'tidyr', 'RcppParallel'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'KFAS'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'dtw', 'rbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rsolnp', 'ks', 'numDeriv', 'spd', 'xts', 'zoo', 'chron',
  'SkewHyperbolic', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Packages suggested but not available for checking: 'udpipe', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'actuar', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'keyholder', 'rlang', 'tibble', 'tidyr', 'magrittr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'modeldata', 'parsnip', 'dials', 'dplyr', 'generics', 'purrr',
  'rlang', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'C50', 'covr', 'Cubist', 'knitr', 'recipes', 'rmarkdown', 'spelling',
  'testthat', 'xrf'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maxLik', 'highfrequency', 'roll', 'xts', 'tseries', 'Rdpack',
  'lubridate', 'zoo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bookdown', 'conflicted', 'rmarkdown', 'table1', 'tidyverse'

Packages suggested but not available for checking:
  'knitr', 'tidymodels', 'tinytex'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'magrittr', 'zoo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'pkgdown', 'testthat', 'NHSRdatasets'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'doParallel', 'foreach'

Packages suggested but not available for checking: 'xml2', 'rvest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'XML'
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Package required but not available: 'coda'

Packages suggested but not available for checking:
  'rjags', 'modeest', 'testthat', 'knitr', 'markdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bigassertr', 'urltools'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fftwtools'

Packages suggested but not available for checking:
  'covr', 'testthat', 'ggplot2', 'knitr', 'rmarkdown', 'sessioninfo',
  'rbenchmark', 'cowplot', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'run_testthat.R'
Running the tests in 'tests/run_testthat.R' failed.
Complete output:
  > ## Load package 'testthat' 
  > if(! require("testthat", quietly=TRUE)) {
  +   message("\nCannot run unit tests -- package 'testthat' is not available!\n")
  + }
  
  Cannot run unit tests -- package 'testthat' is not available!
  
  > 
  > ## run testthat tests
  > test_check("Runuran", reporter=c("summary","check","fail"))
  Error in test_check("Runuran", reporter = c("summary", "check", "fail")) : 
    could not find function "test_check"
  Execution halted
Packages required but not available:
  'XML', 'httr', 'plyr', 'foreach', 'stringr', 'testthat', 'taxize',
  'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggforce', 'ggplot2', 'reshape2', 'shiny', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'bang', 'knitr', 'microbenchmark', 'revdbayes', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'keras', 'purrr', 'R.utils'

Packages suggested but not available for checking:
  'knitr', 'magrittr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'R.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R.oo', 'R.methodsS3'

Package suggested but not available for checking: 'digest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RSpectra', 'progress', 'Rcpp', 'RcppEigen', 'RcppProgress'

Packages suggested but not available for checking: 'ruv', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales', 'gridExtra'

Packages suggested but not available for checking: 'shiny', 'colourpicker'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ade4', 'car', 'FactoMineR', 'lme4', 'mixOmics', 'pls', 'pspearman',
  'vegan'

Packages suggested but not available for checking:
  'ape', 'betareg', 'dgof', 'emmeans', 'EMT', 'FSA', 'glmmTMB',
  'labdsv', 'MuMIn', 'mvnormtest', 'ordinal', 'RGCCA', 'statmod'

Package which this enhances but not available for checking: 'glmmADMB'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'GSVAdata', 'clusterProfiler', 'data.table', 'edgeR', 'org.Hs.eg.db',
  'ComplexHeatmap', 'GSEABase', 'circlize', 'dplyr', 'ggplot2',
  'ggpubr', 'gridExtra', 'haven', 'msigdbr', 'plotly', 'purrr',
  'rWikiPathways', 'stringr', 'tibble', 'tidyr', 'XML', 'rlang'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen', 'RcppArmadillo'

Packages suggested but not available for checking: 'Morpho', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BiocManager', 'yulab.utils'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'ggplot2', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggforce', 'ggplot2', 'magrittr', 'purrr', 'rlang', 'vegan',
  'pheatmap'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'stringr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'curl', 'xml2'

Packages suggested but not available for checking: 'mockery', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'crul', 'dplyr', 'tibble', 'ggplot2', 'maps'

Packages suggested but not available for checking: 'testthat', 'vcr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'lifecycle', 'magrittr', 'rlang', 'selectr', 'tibble', 'xml2'

Packages suggested but not available for checking:
  'covr', 'glue', 'knitr', 'readr', 'rmarkdown', 'repurrrsive',
  'spelling', 'stringi', 'testthat', 'webfakes'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coxme', 'lme4', 'kinship2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'officer', 'gdtools', 'xml2', 'rlang'

Packages suggested but not available for checking:
  'rmarkdown', 'htmltools', 'testthat', 'covr', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pixmap', 'tkrplot', 'rpanel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'gpuR'
Package required but not available: 'rJava'

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Package which this enhances but not available for checking: 'igraph'

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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
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Packages suggested but not available for checking:
  'igraph', 'ggplot2', 'ggraph', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'jsonlite', 'httr', 'stringr', 'lgr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'locfit', 'assertthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Packages suggested but not available for checking: 'knitr', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'CompQuadForm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'spls', 'pls'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'hms', 'httr', 'tidyr', 'progress'

Packages suggested but not available for checking: 'plotly', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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  'dplyr', 'magrittr', 'tidyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
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See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'tibble', 'tidyr', 'feather', 'xts', 'zoo',
  'Rcpp'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'findpython'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'getPass', 'httr', 'readr', 'jsonlite', 'stringr',
  'htmltools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra', 'magrittr', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RWekajars', 'rJava'

Packages suggested but not available for checking:
  'partykit', 'mlbench', 'e1071'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringi', 'tibble'

Packages suggested but not available for checking:
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VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'biglm', 'dplyr', 'lubridate', 'magrittr', 'pryr', 'arm', 'ggplot2',
  'scales'

Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'knitr', 'testthat', 'markdown', 'pander'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'data.table', 'marked'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'gdistance', 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Installation failed.
See 'C:/r_packages/pkgcheck/CRAN/RWinEdt/RWinEdt.Rcheck/00install.out' for details.
Package required but not available: 'lazyeval'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'sp', 'raster', 'units'

Packages suggested but not available for checking:
  'ggplot2', 'geosphere', 'lwgeom', 'microbenchmark', 'knitr',
  'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'meteor', 'Rcpp'

Packages suggested but not available for checking: 'terra', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tmcn', 'HMM'

Packages suggested but not available for checking: 'jiebaR', 'coreNLP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'maptools', 'fields'

Packages suggested but not available for checking:
  'rgdal', 'rworldxtra', 'RColorBrewer', 'classInt'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Package suggested but not available for checking: 'rworldmap'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'brew', 'latexpdf', 'networkD3', 'sig', 'sos', 'XML'

Packages suggested but not available for checking:
  'ctv', 'cranly', 'findR', 'foghorn', 'knitr', 'pacman', 'rmarkdown',
  'xfun'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 426306 marked UTF-8 strings
Package required but not available: 'matlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'dplyr', 'geosphere', 'ggplot2', 'reshape2',
  'jsonlite', 'lubridate', 'magrittr', 'purrr', 'httr', 'stringr',
  'tibble', 'zoo'

Packages suggested but not available for checking:
  'bfast', 'knitr', 'rmarkdown', 'roxygen2', 'testthat', 'spelling',
  'vcr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'ggplot2', 'reshape2', 'phangorn', 'coda', 'viridis', 'plyr',
  'ggdendro', 'GGally'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'dplyr', 'countrycode', 'lubridate', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'mvtnorm', 'coda'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'jpeg', 'png', 'RJSONIO'

Package suggested but not available for checking: 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'kappalab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rJava', 'fingerprint', 'data.table', 'rcdk'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'PreciseSums', 'Rcpp', 'assertthat', 'backports', 'checkmate', 'cli',
  'dparser', 'ggplot2', 'inline', 'lotri', 'magrittr', 'memoise',
  'rex', 'qs', 'sys', 'RcppEigen', 'RcppArmadillo', 'sitmo',
  'StanHeaders', 'BH'

Packages suggested but not available for checking:
  'spelling', 'DT', 'covr', 'crayon', 'curl', 'data.table', 'digest',
  'dplyr', 'ggrepel', 'gridExtra', 'htmltools', 'knitr', 'learnr',
  'microbenchmark', 'remotes', 'rlang', 'rmarkdown', 'scales', 'shiny',
  'stringi', 'symengine', 'testthat', 'tidyr', 'usethis', 'vdiffr',
  'xgxr', 'pillar', 'tibble', 'units', 'rsconnect', 'devtools',
  'patchwork'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'VGAM', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lars', 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'settings', 'xml2'

Packages suggested but not available for checking:
  'devtools', 'exams', 'knitr', 'pkgload', 'rmarkdown', 'igraph',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'magrittr'

Packages suggested but not available for checking:
  'devtools', 'exams', 'knitr', 'pkgload', 'rmarkdown', 'igraph',
  'testthat', 'unix', 'Rmpfr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'bitops', 'jsonlite', 'xml2', 'data.table', 'readr',
  'magrittr', 'dplyr', 'tidyr', 'purrr', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra', 'googleAnalyticsR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'RCurl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'stringr', 'purrr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RCurl', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'stringr', 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plyr', 'RJSONIO', 'reshape2', 'RCurl'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'dplyr', 'gargle', 'snakecase', 'stringr', 'tidyr', 'pbapply',
  'httr', 'withr', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'magrittr', 'dplyr', 'lubridate', 'purrr',
  'data.table'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'data.table', 'RColorBrewer', 'iterators'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maps', 'abind', 'bigmemory', 'GEOmap', 'geomapdata', 'mapproj',
  'NbClust', 'ncdf4', 'plyr', 'SpecsVerification'

Packages suggested but not available for checking:
  'easyVerification', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maps', 'abind', 'bigmemory', 'mapproj', 'ClimProjDiags', 'plyr',
  'ncdf4', 'NbClust', 'multiApply', 'SpecsVerification', 'easyNCDF'

Packages suggested but not available for checking:
  'easyVerification', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'glmnet', 'Metrics', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'wk'

Packages suggested but not available for checking: 'testthat', 'vctrs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'spanel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'biclust', 'irlba', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'RANN', 'DNAcopy'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'dplyr', 'entropy', 'raster', 'rlang', 'sf', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

Packages which this enhances but not available for checking:
  'stars', 'terra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.tree', 'jsonlite', 'Trading'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'testit', 'R6'

Packages suggested but not available for checking:
  'nloptr', 'FNN', 'dfoptim', 'DEoptim', 'lhs', 'rgl', 'scales',
  'numDeriv', 'pracma', 'reshape2', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'pracma', 'DDD'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'PDQutils', 'hypergeo', 'orthopolynom'

Packages suggested but not available for checking:
  'SharpeR', 'shiny', 'testthat', 'ggplot2', 'xtable', 'formatR',
  'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/sadists.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dualtrees', 'emdist'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'bbmle', 'VGAM', 'poilog', 'GUILDS'

Package suggested but not available for checking: 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sae'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'COUNT'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'coda', 'rjags'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'coda', 'rjags'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'rjags', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'coda', 'rjags'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'coda', 'rjags', 'nimble', 'CARBayesdata'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'coda', 'rjags'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rjags', 'coda', 'stringr', 'data.table'

Packages suggested but not available for checking:
  'saeHB', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'coda', 'rjags'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'coda', 'rjags'

Packages suggested but not available for checking:
  'saeHB', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'expm', 'dplyr', 'ClusterR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'npde', 'gridExtra', 'ggplot2', 'rlang'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aoos', 'assertthat', 'ggplot2', 'magrittr', 'modules', 'memoise',
  'pbapply', 'Rcpp', 'spdep', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'sae', 'saeSim', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
fit.saery.AR1: no visible global function definition for 'qnorm'
fit.saery.MA1: no visible global function definition for 'qnorm'
fit.saery.indep: no visible global function definition for 'qnorm'
mse.saery.boot.AR1.typeI: no visible global function definition for
  'rnorm'
mse.saery.boot.AR1.typeI: no visible global function definition for
  'write.table'
mse.saery.boot.AR1.typeII: no visible global function definition for
  'rnorm'
mse.saery.boot.AR1.typeII: no visible global function definition for
  'write.table'
mse.saery.boot.MA1.typeI: no visible global function definition for
  'rnorm'
mse.saery.boot.MA1.typeI: no visible global function definition for
  'write.table'
mse.saery.boot.MA1.typeII: no visible global function definition for
  'rnorm'
mse.saery.boot.MA1.typeII: no visible global function definition for
  'write.table'
plot.saery: no visible global function definition for 'devAskNewPage'
plot.saery: no visible global function definition for 'par'
plot.saery: no visible global function definition for 'abline'
plot.saery: no visible global function definition for 'title'
plot.saery: no visible global function definition for 'axis'
plot.saery: no visible global function definition for 'lines'
plot.saery: no visible global function definition for 'legend'
pvalue: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  abline axis devAskNewPage legend lines par pnorm qnorm rnorm title
  write.table
Consider adding
  importFrom("grDevices", "devAskNewPage")
  importFrom("graphics", "abline", "axis", "legend", "lines", "par",
             "title")
  importFrom("stats", "pnorm", "qnorm", "rnorm")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Packages required but not available:
  'dplyr', 'functional', 'ggplot2', 'spdep', 'parallelMap', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lmtest', 'car', 'ggplot2', 'ggspatial'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'caTools', 'EBImage', 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolveAPI'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'readxl', 'jsonlite', 'chron', 'curl', 'sf', 'httr', 'igraph'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ape', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'glue'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sodium', 'base64enc', 'assertthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'hypergeo', 'BiasedUrn', 'dplyr', 'purrr', 'rlang'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'DT', 'forcats', 'ggplot2', 'htmlwidgets', 'huxtable',
  'jsonlite', 'pharmaRTF', 'plotly', 'purrr', 'RColorBrewer', 'rlang',
  'shiny', 'stringr', 'Tendril', 'Tplyr'

Packages suggested but not available for checking:
  'testthat', 'shinytest', 'safetyData', 'safetyGraphics', 'yaml'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 3 marked Latin-1 strings
Packages required but not available:
  'dplyr', 'DT', 'datamods', 'htmlwidgets', 'jsonlite', 'magrittr',
  'purrr', 'rclipboard', 'rlang', 'safetyData', 'safetyCharts',
  'shiny', 'shinyjs', 'sortable', 'stringr', 'yaml'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'shinydashboard', 'shinytest',
  'testthat', 'usethis', 'listviewer', 'shinybusy', 'shinyWidgets'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'prettydoc', 'rmarkdown', 'testthat', 'covr',
  'learnr', 'spelling', 'spatstat.data', 'PMCMR', 'PMCMRplus',
  'devtools', 'extrafont', 'DescTools', 'GGally', 'VGAM', 'car',
  'dplyr', 'tibble', 'ggiraphExtra', 'scales', 'spatstat', 'vcd'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'MixSim', 'mclust', 'lowmemtkmeans', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'glmnet', 'glasso'
Running examples in 'sAIC-Ex.R' failed
The error most likely occurred in:

> ### Name: sAIC
> ### Title: Compute the Akaike information criterion for the lasso in
> ###   generalized linear models
> ### Aliases: sAIC
> ### Keywords: models regression
> 
> ### ** Examples
> 
> library(MASS)
> library(glmnet)
Error in library(glmnet) : there is no package called 'glmnet'
Execution halted
Packages required but not available: 'glmnet', 'gglasso'

Packages suggested but not available for checking:
  'grpreg', 'truncnorm', 'foreach', 'doParallel', 'testthat', 'covr',
  'vdiffr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'vctrs', 'tibble', 'readr', 'lubridate', 'anytime',
  'rlang', 'httr', 'curl', 'data.table', 'XML', 'xml2', 'jsonlite',
  'rlist', 'zip', 'base64enc', 'mime', 'lifecycle'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'spelling', 'here',
  'microbenchmark', 'ggplot2', 'sessioninfo'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'knitr', 'coda'
Packages required but not available: 'assertthat', 'purrr', 'stringr'

Packages suggested but not available for checking:
  'charlatan', 'testthat', 'tibble', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'optimx', 'survey'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'scales'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'dplyr', 'smotefamily', 'e1071', 'ranger', 'pROC', 'FNN'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gdistance', 'raster', 'Rcpp', 'RcppEigen', 'RcppThread'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'viridisLite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'pROC', 'abind', 'nloptr', 'foreach', 'doParallel',
  'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'ggplot2', 'lintr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'tidyr', 'reshape', 'purrr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maxLik', 'miscTools', 'systemfit', 'Formula', 'VGAM', 'mvtnorm'

Packages suggested but not available for checking: 'lmtest', 'Ecdat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'TeachingSampling', 'timeDate', 'dplyr', 'magrittr'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DescTools', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'DescTools'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lubridate', 'splitstackshape'

Packages suggested but not available for checking: 'haven', 'rio'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pps', 'sampling', 'survey'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'lme4'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/my-vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'samplingVarEst'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lpSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'memoise', 'doParallel', 'pbapply', 'SamplingBigData', 'glue'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'formattable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sn', 'pracma', 'dplyr', 'plyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'raster', 'latticeExtra', 'rasterVis'

Packages suggested but not available for checking: 'rgl', 'rgeos'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'impute', 'matrixStats', 'shiny', 'shinyFiles', 'openxlsx', 'GSA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'MSEtool', 'TMB', 'corpcor', 'dplyr', 'gplots', 'rmarkdown',
  'snowfall', 'vars', 'RcppEigen'

Packages suggested but not available for checking:
  'abind', 'caret', 'covr', 'ggplot2', 'knitr', 'mvtnorm', 'numDeriv',
  'reshape2', 'shiny', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'BART'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'metafor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Matching'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'RLumModel'

Packages suggested but not available for checking:
  'EMMAgeo', 'Luminescence', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'igraphdata'

Packages suggested but not available for checking:
  'GO.db', 'GOstats', 'ROCR', 'ape', 'blockmodels', 'car',
  'eigenmodel', 'ergm', 'fdrtool', 'ggplot2', 'huge', 'kernlab',
  'network', 'networkDynamic', 'networkTomography', 'ngspatial',
  'org.Sc.sgd.db', 'sna', 'vioplot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'zoo'

Packages suggested but not available for checking:
  'AER', 'car', 'geepack', 'lmtest', 'multiwayvcov', 'pcse', 'plm',
  'pscl', 'scatterplot3d', 'strucchange'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'ggplot2', 'gridExtra', 'geodetector', 'caret', 'lwgeom',
  'dplyr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'ggpubr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'xml2', 'rvest', 'lubridate', 'magrittr', 'tibble', 'dplyr', 'readr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'scales', 'janitor', 'readr', 'ggthemes',
  'magrittr', 'readxl', 'ggtext', 'DBI', 'odbc', 'rlang', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'kableExtra'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'checkmate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'simplegraph'

Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shiny', 'colourpicker', 'manipulateWidget',
  'DT'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'foreach', 'doParallel', 'pcaMethods', 'ggplot2',
  'gridExtra', 'reshape2', 'iterators', 'shiny', 'shinythemes'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pander', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'assertthat', 'glue', 'lifecycle', 'rlang', 'vctrs'

Packages suggested but not available for checking:
  'bit64', 'covr', 'testthat', 'knitr', 'lubridate', 'bench', 'purrr',
  'rmarkdown', 'scales', 'stringi', 'units', 'withr', 'hms', 'haven'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'widyr', 'stringr', 'tidytext', 'rtweet', 'tidyr', 'igraph',
  'ggplot2', 'ggraph', 'scales', 'reshape2', 'lubridate', 'magrittr',
  'ldatuning', 'topicmodels'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'httr', 'base64enc', 'tibble',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'assertthat', 'dplyr', 'furrr', 'ggplot2', 'glue', 'lubridate',
  'magrittr', 'purrr', 'rlang', 'stringr', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'future', 'knitr', 'remotes', 'rmarkdown', 'testthat', 'xtable'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'lubridate', 'dplyr', 'purrr', 'readr', 'tidyr',
  'magrittr', 'httr'

Package suggested but not available for checking: 'openair'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tcltk2', 'raster', 'sp', 'rgdal'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'PolynomF', 'Formula', 'lagged', 'Rcpp', 'Rdpack', 'numDeriv',
  'ltsa', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'KFAS', 'FKF', 'FitARMA', 'fGarch', 'fImport', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'car'

Package suggested but not available for checking: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sarp.snowprofile', 'dtw', 'shiny', 'data.table'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dendextend', 'smacof', 'testthat', 'progress'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'xml2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'stringr', 'sarp.snowprofile.alignment'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'AzureRMR', 'AzureStor', 'dplyr', 'httr', 'jsonlite', 'R6', 'Rcpp',
  'RcppParallel', 'RcppArmadillo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xml2', 'processx', 'digest', 'BH'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'covr', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'nortest', 'crayon', 'cli', 'numDeriv', 'doParallel', 'foreach',
  'AICcmodavg'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
download.sas7bdat.sources : <anonymous>: no visible global function
  definition for 'download.file'
generate.sas7bdat.source: no visible global function definition for
  'download.file'
Undefined global functions or variables:
  download.file
Consider adding
  importFrom("utils", "download.file")
to your NAMESPACE file.
parse.SAScii: no visible binding for global variable 'end'
parse.SAScii: no visible binding for global variable 'start'
read.SAScii: no visible global function definition for 'download.file'
read.SAScii: no visible global function definition for 'unzip'
read.SAScii: no visible global function definition for 'read.fwf'
read.SAScii: no visible global function definition for 'capture.output'
Undefined global functions or variables:
  capture.output download.file end read.fwf start unzip
Consider adding
  importFrom("stats", "end", "start")
  importFrom("utils", "capture.output", "download.file", "read.fwf",
             "unzip")
to your NAMESPACE file.
Packages required but not available:
  'Rcpp', 'fda', 'mclust', 'matrixcalc', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'readr', 'stringr', 'stringi'

Packages suggested but not available for checking: 'testthat', 'markdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'lme4'
Errors in running code in vignettes:
when running code in 'Usinglmer.Rnw'

> options(width = 75, contrasts = c(unordered = "contr.SAS", 
+     ordered = "contr.poly"))

> library(SASmixed)

> library(lme4)

  When sourcing 'Usinglmer.R':
Error: there is no package called 'lme4'
Execution halted

  'Usinglmer.Rnw'... failed
Error(s) in re-building vignettes:
--- re-building 'Usinglmer.Rnw' using Sweave

Error: processing vignette 'Usinglmer.Rnw' failed with diagnostics:
 chunk 1 (label = preliminaries) 
Error in library(lme4) : there is no package called 'lme4'

--- failed re-building 'Usinglmer.Rnw'

SUMMARY: processing the following file failed:
  'Usinglmer.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'fs', 'rlang', 'htmltools', 'R6', 'rappdirs'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'withr', 'shiny', 'curl'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'logr', 'fmtr', 'libr', 'reporter'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'tidylog', 'magrittr', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Hmisc', 'stringi'

Package which this enhances but not available for checking: 'chron'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Invalid NAMESPACE file, parsing gives:
Error in packageVersion("raster"): there is no package called 'raster'

See section 'Package namespaces' in the 'Writing R Extensions' manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'ncdf4', 'maps', 'maptools', 'PBSmapping', 'splancs', 'sp',
  'geosphere', 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'RColorBrewer', 'sp', 'SeerMapper'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'glmnet', 'foreach', 'iterators', 'doParallel'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
loads: no visible global function definition for 'untar'
saves: no visible global function definition for 'tar'
Undefined global functions or variables:
  tar untar
Consider adding
  importFrom("utils", "tar", "untar")
to your NAMESPACE file.
Packages required but not available: 'glue', 'htmltools', 'httr', 'crayon'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gee'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bspec', 'dplyr', 'fftwtools', 'pracma', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MSGARCH', 'forecast', 'rugarch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'twang', 'survey'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiagrammeR', 'Rcpp', 'discretization', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
K: no visible global function definition for 'dnorm'
sBF: no visible global function definition for 'density'
sBF: no visible global function definition for 'txtProgressBar'
sBF: no visible global function definition for 'setTxtProgressBar'
Undefined global functions or variables:
  density dnorm setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "density", "dnorm")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Packages required but not available: 'glmnet', 'network'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'poLCA', 'R.oo', 'R.methodsS3', 'mclust', 'igraph', 'Rcpp',
  'combinat', 'flexmix', 'hash'

Packages suggested but not available for checking:
  'testthat', 'mvtnorm', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'Rcpp', 'Rdpack', 'expm', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'alluvial', 'magrittr', 'dplyr', 'purrr', 'blockmodels', 'R6',
  'Rcpp', 'igraph', 'ggplot2', 'GREMLINS', 'stringr', 'rlang',
  'reshape2', 'prodlim', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'spelling', 'knitr', 'rmarkdown', 'aricode', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales', 'reshape2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang', 'Rcpp'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rlang', 'tidyr', 'dplyr', 'testthat'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'rmarkdown', 'cli', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'jsonlite', 'curl', 'httr', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'xml2', 'sf', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'slam', 'spatstat.geom'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

Packages which this enhances but not available for checking:
  'gurobi', 'Rcplex', 'Rmosek', 'pogs', 'osqp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'httptest', 'ggplot2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'reticulate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'stringr', 'tensorflow'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'TAM', 'catR'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'pvclust', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'farver', 'labeling', 'lifecycle', 'munsell', 'R6', 'RColorBrewer',
  'viridisLite'

Packages suggested but not available for checking:
  'bit64', 'covr', 'dichromat', 'ggplot2', 'hms', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.matlab', 'protoclust', 'igraph', 'gam'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'knitr', 'kableExtra', 'readxl', 'mblm', 'meta', 'magrittr',
  'yaml'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coda', 'Hmisc'

Package suggested but not available for checking: 'gdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'terra'

Packages suggested but not available for checking:
  'gifski', 'knitr', 'leafem', 'leaflet', 'leafpop', 'mapview',
  'raster', 'spelling', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'neldermead', 'optimsimplex', 'optimbase', 'deSolve'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'library' or 'require' call to 'stats' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
plot.scair: no visible global function definition for 'par'
plot.scair: no visible global function definition for 'points'
plot.scar: no visible global function definition for 'par'
plot.scar: no visible global function definition for 'points'
predict.scair: no visible global function definition for 'approx'
predict.scar: no visible global function definition for 'approx'
scair: no visible global function definition for 'gaussian'
scair: no visible global function definition for 'runif'
scair: no visible global function definition for 'rnorm'
scar: no visible global function definition for 'gaussian'
scar: no visible global function definition for 'glm.fit'
scar: no visible global function definition for 'approx'
Undefined global functions or variables:
  approx gaussian glm.fit par points rnorm runif
Consider adding
  importFrom("graphics", "par", "points")
  importFrom("stats", "approx", "gaussian", "glm.fit", "rnorm", "runif")
to your NAMESPACE file.
Packages unavailable to check Rd xrefs: 'Iso', 'scam', 'gam'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'jmvcore', 'R6', 'ggplot2', 'cowplot', 'ggstance', 'ggridges'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmlwidgets', 'digest', 'ellipse'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

Package which this enhances but not available for checking: 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'ggforce', 'rlang', 'ggfun', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc', 'maps'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Packages suggested but not available for checking:
  'testthat', 'shiny', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sparcl', 'sigclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'foreach', 'doSNOW', 'raster', 'fields', 'LiblineaR', 'limma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'readxl', 'tibble'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytex'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'scDHA', 'FNN', 'purrr', 'markdown'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'progress', 'crayon', 'reshape2'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'pcalg', 'Rgraphviz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'distances'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'ggrepel', 'igraph', 'irlba', 'magrittr',
  'pbmcapply', 'pROC', 'Rcpp', 'rlang', 'scales', 'tibble', 'uwot',
  'withr', 'RcppArmadillo', 'RcppProgress', 'RcppEigen'

Packages suggested but not available for checking:
  'ggrastr', 'rmumps', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dummies', 'corpcor', 'fda', 'R.methodsS3', 'gnm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'quadprog', 'lpSolve'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixStats', 'foreach', 'doParallel', 'igraph', 'uwot',
  'clusterCrit', 'Rcpp', 'RcppParallel', 'RcppAnnoy', 'torch',
  'RhpcBLASctl', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'mclust'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'readxl', 'lmeInfo'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown', 'ggplot2', 'plyr', 'shiny', 'glue',
  'janitor', 'rclipboard', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'DelayedArray', 'future', 'future.apply', 'magrittr',
  'Seurat'

Packages suggested but not available for checking:
  'biomaRt', 'covr', 'ggplot2', 'igraph', 'kableExtra', 'KEGGREST',
  'knitr', 'ontologyIndex', 'ontoProc', 'pkgdown', 'RColorBrewer',
  'rmarkdown', 'spelling', 'SingleCellSignalR', 'testthat',
  'visNetwork'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sandwich', 'strucchange', 'mirt', 'zoo'

Packages suggested but not available for checking:
  'mvtnorm', 'psychotree', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'devtools', 'mathjaxr'

Packages suggested but not available for checking:
  'knitr', 'markdown', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'entropy', 'tibble'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SCEPtER'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'expm', 'ggplot2', 'pROC', 'ade4'

Package suggested but not available for checking: 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FNN', 'spData', 'sp', 'dplyr', 'optimParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'stringr', 'ggplot2', 'magrittr', 'purrr', 'apcluster',
  'OpenImageR'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'crayon'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.cache', 'dplyr', 'httr', 'rvest', 'stringr', 'xml2', 'tidygraph',
  'ggraph', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
prime.factor: no visible global function definition for 'data'
prime.factor: no visible binding for global variable 'primlist'
Undefined global functions or variables:
  data primlist
Consider adding
  importFrom("utils", "data")
to your NAMESPACE file.
Package suggested but not available for checking: 'ez'
Package unavailable to check Rd xrefs: 'ez'
Packages required but not available:
  'dplyr', 'ggplot2', 'magrittr', 'stringi', 'stringr', 'tibble',
  'tidyr', 'tidytext'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'formatR', 'rlang', 'tidyr'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'here', 'hexSticker', 'knitr', 'purrr',
  'rmarkdown', 'showtext', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'numDeriv', 'cobs', 'scam', 'rbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'scales'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'dplyr', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'tm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat', 'png'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'RColorBrewer', 'scales', 'ggplot2', 'cowplot', 'tibble', 'stringr',
  'tidyverse', 'readr', 'tidyr', 'dplyr', 'purrr', 'gtools', 'plyr',
  'forcats', 'easypackages', 'BiocStyle'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RANN', 'igraph', 'stringr', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forcats', 'ggplot2', 'gghalves', 'purrr', 'stringr',
  'tibble', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'spelling', 'htmlTable', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fitdistrplus', 'lmomco'

Package suggested but not available for checking: 'evd'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rTensor', 'ica', 'fgsea', 'circlize', 'reshape2', 'ComplexHeatmap',
  'ggplot2', 'Rcpp', 'RColorBrewer', 'dplyr', 'edgeR', 'sva', 'Rmisc',
  'ggpubr', 'msigdbr', 'sccore', 'NMF', 'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'coda.base', 'ssvd',
  'simplifyEnrichment', 'WGCNA', 'cowplot', 'matrixStats', 'stringr',
  'zoo', 'rlang', 'AnnotationDbi', 'GO.db', 'conos', 'pagoda2',
  'betareg', 'slam', 'tm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ellipse'

Packages suggested but not available for checking:
  'covr', 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glasso'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'tibble', 'dplyr', 'rlang', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'pheatmap', 'Seurat', 'GSVA', 'downloader', 'pcaMethods',
  'gProfileR', 'limSolve', 'gprofiler2', 'pbapply', 'ADAPTS', 'reshape'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mclust', 'ggplot2', 'Rcpp', 'SingleCellExperiment', 'purrr',
  'BiocSingular', 'SummarizedExperiment', 'scater', 'scran',
  'S4Vectors', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'alakazam', 'shazam', 'data.table', 'doParallel', 'dplyr',
  'foreach', 'Rcpp', 'rlang', 'scales', 'stringi', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'behavr', 'data.table', 'readr', 'stringr', 'RSQLite', 'memoise'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'ggetho', 'zeitgebr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'e1071', 'gbm', 'partykit', 'randomForest', 'reshape2',
  'sqldf', 'stringr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'gridExtra', 'foreach', 'doParallel',
  'openxlsx', 'stringi'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pkgdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
score.GGUM: no visible global function definition for 'dnorm'
score.GGUM: no visible global function definition for 'hist'
score.GGUM: no visible global function definition for 'write.table'
Undefined global functions or variables:
  dnorm hist write.table
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "dnorm")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Packages required but not available: 'checkmate', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'combinat', 'limSolve', 'RSpectra', 'igraph', 'igraphdata'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
CreatePssm: no visible binding for global variable 'training'
Undefined global functions or variables:
  training
Package required but not available: 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'run-all.R'
Running the tests in 'tests/run-all.R' failed.
Complete output:
  > library("testthat")
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'Rcpp', 'knitr', 'RcppArmadillo'

Packages suggested but not available for checking:
  'gsl', 'hypergeo', 'rmarkdown', 'testthat', 'crch'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/article.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'discretization', 'sqldf', 'magrittr', 'dplyr'

Packages suggested but not available for checking:
  'Rmixmod', 'mvtnorm', 'ggplot2', 'speedglm', 'knitr', 'rmarkdown',
  'plotly', 'pROC', 'shiny', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'forcats', 'ggplot2', 'goftest', 'scoringRules'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pracma', 'foreach', 'doParallel', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'dynutils', 'dynwrap', 'ggplot2', 'lmds', 'mclust',
  'pbapply', 'pheatmap', 'princurve', 'purrr', 'ranger', 'RANN',
  'RColorBrewer', 'reshape2', 'tidyr', 'TSP'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'R.rsp', 'testthat'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doParallel', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reshape2', 'effsize', 'car', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'doBy', 'xtable'

Package suggested but not available for checking: 'lme4'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ggpubr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'glasso'

Package suggested but not available for checking: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'abind', 'CVXR', 'doRNG', 'doSNOW', 'dplyr', 'ECOSolveR',
  'fastDummies', 'foreach', 'ggplot2', 'magrittr', 'nloptr', 'purrr',
  'Qtools', 'rlang', 'stringr', 'tibble', 'tidyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppProgress', 'doParallel', 'foreach', 'ggplot2', 'dplyr',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark', 'glasso',
  'pkgdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RandomFields', 'interp', 'rgl', 'mvtnorm'

Package which this enhances but not available for checking: 'fields'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RANN', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'AER', 'ggplot2'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'XML', 'xml2', 'rvest', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'XML', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'rvest', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'RSQLite', 'oligoClasses', 'DBI'
Packages required but not available:
  'splatter', 'S4Vectors', 'SummarizedExperiment',
  'SingleCellExperiment', 'edgeR', 'knitr', 'BiocManager',
  'BiocGenerics', 'Seurat', 'crayon', 'fitdistrplus', 'checkmate'

Packages suggested but not available for checking: 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'testthat', 'lintr', 'formatR', 'devtools', 'roxygen2',
  'rmarkdown', 'Rd2md'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'scriptexec-Ex.R' failed
The error most likely occurred in:

> ### Name: execute
> ### Title: Executes a script and returns the output. The stdout and stderr
> ###   are captured and returned. In case of errors, the exit code will
> ###   return in the status field.
> ### Aliases: execute
> 
> ### ** Examples
> 
> library('scriptexec')
> library('testthat')
Error in library("testthat") : there is no package called 'testthat'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'RCy3', 'formatR', 'dplyr', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rlang', 'purrr'

Packages suggested but not available for checking: 'testthat', 'devtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'dplyr', 'testthat'
Running examples in 'scriptuRs-Ex.R' failed
The error most likely occurred in:

> ### Name: kjv_bible
> ### Title: Tidy data frame of the King James Version of the Bible
> ### Aliases: kjv_bible
> 
> ### ** Examples
> 
> library(dplyr)
Error in library(dplyr) : there is no package called 'dplyr'
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'ape', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Seurat', 'ggplot2', 'stringr', 'clustree', 'magrittr', 'dplyr',
  'patchwork'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'ALL', 'ConsensusClusterPlus', 'scatterplot3d', 'ggplot2',
  'Rtsne', 'limma', 'edgeR', 'TPEA', 'Rmisc', 'plyr', 'ggthemes',
  'reshape2', 'PerformanceAnalytics', 'corrplot', 'Hmisc', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'glue'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'httr', 'purrr', 'tibble'

Packages suggested but not available for checking:
  'covr', 'httptest', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages suggested but not available for checking: 'slam', 'testthat'
GNU make is a SystemRequirements.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'pbapply', 'RSpectra', 'scTenifoldNet'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pbapply', 'RSpectra', 'RhpcBLASctl'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'future', 'ggplot2', 'Synth', 'stringr', 'cvTools', 'furrr', 'dplyr',
  'purrr', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'tidyr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'future.apply', 'future', 'ggplot2', 'reshape2',
  'rlang', 'gridExtra', 'matrixStats', 'RcppArmadillo', 'Rcpp'

Packages suggested but not available for checking:
  'irlba', 'testthat', 'knitr'

Package which this enhances but not available for checking: 'glmGamPoi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'scales', 'assertthat', 'dplyr', 'viridis', 'viridisLite'

Packages suggested but not available for checking: 'testthat', 'tibble'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'smotefamily', 'mclust'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggExtra', 'ggplot2', 'plotly', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'survey', 'ggplot2'
lahiri.design: no visible global function definition for 'runif'
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Errors in running code in vignettes:
when running code in 'SDaA_using_survey.Rnw'

> options(width = 65)

> library(SDaA)

> library(survey)

  When sourcing 'SDaA_using_survey.R':
Error: there is no package called 'survey'
Execution halted

  'SDaA_using_survey.Rnw' using 'UTF-8'... failed
Error(s) in re-building vignettes:
--- re-building 'SDaA_using_survey.Rnw' using Sweave

Error: processing vignette 'SDaA_using_survey.Rnw' failed with diagnostics:
 chunk 2 (label = loadPkg) 
Error in library(survey) : there is no package called 'survey'

--- failed re-building 'SDaA_using_survey.Rnw'

SUMMARY: processing the following file failed:
  'SDaA_using_survey.Rnw'

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'glmnet', 'glasso', 'huge', 'POET'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pdist', 'PrevMap', 'raster', 'sp', 'spatstat', 'splancs',
  'maptools', 'progress', 'spacetime', 'mapview', 'geoR',
  'spatstat.geom'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'ggplot2', 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'entropy', 'corpcor', 'fdrtool'

Package suggested but not available for checking: 'crossval'

Package which this enhances but not available for checking: 'care'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'
Note: found 51 marked UTF-8 strings
Packages required but not available: 'linbin', 'grImport2', 'readxl'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinythemes', 'shiny', 'shinyjs', 'shinyTree', 'jsonlite', 'rlang',
  'data.table', 'cli', 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'checkmate', 'cli', 'data.table', 'mathjaxr'

Packages suggested but not available for checking:
  'cffr', 'knitr', 'lfe', 'rmarkdown', 'skimr', 'spelling', 'testthat',
  'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'carData', 'rmarkdown', 'knitr', 'data.table', 'xtable',
  'robustbase', 'e1071', 'Rcpp', 'ggplot2', 'shiny', 'haven',
  'rhandsontable', 'DT', 'shinyBS', 'prettydoc', 'VIM'

Packages suggested but not available for checking: 'laeken', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/sdc_guidelines.rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rdpack', 'plyr', 'dplyr', 'ggplot2'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'raster'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'sp', 'sf', 'FNN'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'sdcHierarchies', 'data.table', 'knitr', 'rlang', 'stringr',
  'Rglpk', 'slam', 'lpSolveAPI', 'glpkAPI', 'progress'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'webshot', 'digest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magic', 'foreach', 'doParallel', 'tuple'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'doParallel', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Hmisc', 'sm', 'tseries', 'rpanel', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'shiny'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fda', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'mvtnorm', 'colorRamps', 'RcppArmadillo'

Packages suggested but not available for checking:
  'rgl', 'Bessel', 'manipulate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'plotKML', 'sp', 'raster', 'trip', 'data.table',
  'gridExtra', 'ggsn', 'maps', 'pracma', 'plyr', 'ggmap', 'lubridate',
  'dplyr', 'emmeans'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'sp', 'shiny'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'rgdal', 'automap',
  'future.apply', 'blockCV', 'dismo', 'DT', 'kernlab', 'randomForest',
  'readxl', 'rhandsontable', 'sf', 'shinyBS', 'shinyFiles', 'SSDM',
  'ggcorrplot', 'ggplot2', 'cowplot', 'haven', 'dplyr', 'tidyr',
  'data.table', 'rgeos', 'rJava'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'dismo'

Packages suggested but not available for checking:
  'maptools', 'testthat', 'knitr', 'rmarkdown', 'markdown', 'ncdf4',
  'rgdal', 'sp', 'rJava', 'gbm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R.utils', 'raster', 'rgdal'

Packages suggested but not available for checking:
  'ggplot2', 'reshape2', 'testthat', 'knitr', 'rmarkdown', 'httr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'raster'

Packages suggested but not available for checking:
  'R.rsp', 'shinyBS', 'shiny', 'dismo', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dismo', 'gbm', 'ggplot2', 'jsonlite', 'maxnet', 'progress',
  'randomForest', 'raster', 'Rcpp', 'rlang', 'rstudioapi', 'stringr',
  'whisker'

Packages suggested but not available for checking:
  'cli', 'covr', 'crayon', 'htmltools', 'kableExtra', 'knitr', 'maps',
  'pkgdown', 'plotROC', 'rasterVis', 'reshape2', 'rgdal', 'rJava',
  'rmarkdown', 'scales', 'testthat', 'zeallot'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'psych'

Packages suggested but not available for checking:
  'ggplot2', 'testthat', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'rCMA', 'matrixcalc', 'rJava', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'GB2', 'pscl', 'mvtnorm', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'numDeriv', 'PolynomF', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'ggplot2', 'sp', 'rgdal', 'rgeos', 'rasterVis', 'tidyr',
  'raster', 'dismo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'oce', 'gsw', 'SolveSAPHE'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'CompQuadForm'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'matrixStats', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'googleAuthR', 'stringr'

Packages suggested but not available for checking:
  'shiny', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
adx: no visible global function definition for 'abline'
adx: no visible global function definition for 'legend'
dx: no visible global function definition for 'abline'
dx: no visible global function definition for 'legend'
maxd: no visible global function definition for 'abline'
maxd: no visible global function definition for 'legend'
pc: no visible global function definition for 'rainbow'
pc: no visible global function definition for 'abline'
pc: no visible global function definition for 'legend'
pc: no visible global function definition for 'points'
pcu: no visible global function definition for 'rainbow'
pcu: no visible global function definition for 'abline'
pcu: no visible global function definition for 'legend'
pcu: no visible global function definition for 'points'
rmsd: no visible global function definition for 'abline'
rmsd: no visible global function definition for 'legend'
rsd: no visible global function definition for 'abline'
rsd: no visible global function definition for 'legend'
Undefined global functions or variables:
  abline legend points rainbow
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "abline", "legend", "points")
to your NAMESPACE file.
Packages required but not available:
  'ggplot2', 'gridExtra', 'TTR', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'quantmod', 'dygraphs', 'plotrix', 'htmltools', 'zoo'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'x13binary'

Packages suggested but not available for checking:
  'seasonalview', 'testthat', 'covr', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'seasonal', 'shinydashboard', 'shiny', 'dygraphs', 'htmlwidgets',
  'openxlsx', 'xtable', 'xts', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'dlnm', 'coda', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Note: found 3 marked UTF-8 strings
Packages required but not available: 'xts', 'zoo', 'forecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rms', 'lubridate', 'reshape2', 'plyr'

Package suggested but not available for checking: 'waterData'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'Hmisc', 'optimization'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'JM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SPSL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'secr', 'abind'

Package suggested but not available for checking: 'secrlinear'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'openssl', 'rprojroot', 'curl', 'jsonlite'

Packages suggested but not available for checking:
  'covr', 'mockery', 'testthat', 'knitr', 'rmarkdown', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'stringr', 'tidyr', 'dplyr', 'magrittr', 'testthat', 'rlang'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'secr', 'maptools', 'rgdal', 'sp', 'igraph'

Packages suggested but not available for checking:
  'knitr', 'rgeos', 'rmarkdown', 'secrdesign'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'sf', 'raster', 'terra', 'stringr', 'Rcpp', 'RcppParallel',
  'RcppNumerical', 'RcppEigen', 'BH'

Packages suggested but not available for checking:
  'gdistance', 'knitr', 'readxl', 'rmarkdown', 'sp', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DDD', 'ape', 'foreach', 'doParallel', 'apTreeshape', 'phylobase',
  'geiger', 'deSolve'

Packages suggested but not available for checking:
  'diversitree', 'phytools', 'testthat', 'testit', 'knitr', 'rmarkdown'

Package which this enhances but not available for checking: 'doMC'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'haven', 'readr', 'readxl', 'stringr', 'tibble', 'magrittr', 'purrr',
  'tidyr', 'dplyr', 'rlang', 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'lintr', 'rmarkdown', 'testthat', 'tufte', 'igraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'jsonlite', 'RCurl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'crayon', 'purrr', 'stringr', 'rstudioapi', 'magrittr',
  'ggplot2', 'fansi'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'CCA', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quanteda', 'Rcpp', 'RcppParallel', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'quanteda.textmodels', 'topicmodels'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'drc', 'ggplot2', 'car', 'crayon', 'emmeans', 'multcomp', 'hnp',
  'multcompView', 'stringr'

Packages suggested but not available for checking:
  'DT', 'knitr', 'rmarkdown', 'roxygen2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'binom'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'pracma', 'Deriv', 'Ryacas', 'mvtnorm', 'matrixStats',
  'statmod', 'coda', 'ggplot2', 'tidyr', 'dplyr', 'Hmisc', 'R.utils',
  'callr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rsbml'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages unavailable to check Rd xrefs: 'EDNE.EQ', 'T2EQ'
Packages required but not available:
  'dplyr', 'ggplot2', 'rgl', 'demography', 'Rcpp', 'reshape2',
  'tibble', 'LaF', 'DBI', 'RSQLite', 'openxlsx', 'WriteXLS',
  'labelled', 'scales', 'forcats', 'purrr', 'readr', 'tidyr',
  'stringr', 'plyr'

Package suggested but not available for checking: 'bbmle'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayestestR', 'datawizard', 'effectsize', 'ggplot2', 'insight',
  'parameters'

Packages suggested but not available for checking:
  'brms', 'coda', 'correlation', 'emmeans', 'factoextra', 'ggdist',
  'ggraph', 'ggrepel', 'ggridges', 'ggside', 'glmmTMB', 'httr',
  'lavaan', 'lme4', 'logspline', 'mclust', 'metafor', 'modelbased',
  'NbClust', 'nFactors', 'patchwork', 'performance', 'poorman',
  'psych', 'qqplotr', 'randomForest', 'rmarkdown', 'rstanarm',
  'spelling', 'testthat', 'tidygraph', 'tidyr', 'vdiffr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'maptools', 'RColorBrewer', 'rgdal', 'sp', 'stringr',
  'SeerMapperRegs', 'SeerMapperEast', 'SeerMapperWest',
  'SeerMapper2010Regs', 'SeerMapper2010East', 'SeerMapper2010West'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'urca', 'forecast', 'dplyr', 'magrittr', 'randomForest',
  'forecTheta', 'stringr', 'tibble', 'purrr', 'future', 'furrr',
  'tsfeatures'

Packages suggested but not available for checking:
  'testthat', 'covr', 'repmis', 'knitr', 'rmarkdown', 'ggplot2',
  'tidyr', 'Mcomp', 'GGally'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tuneR'

Packages suggested but not available for checking:
  'audio', 'fftw', 'ggplot2', 'rgl', 'rpanel', 'phonTools', 'signal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RColorBrewer', 'dplyr', 'plyr', 'reshape2', 'ggplot2', 'magrittr',
  'Rcpp', 'zoo', 'scales', 'rlang', 'cli', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dygraphs', 'xts', 'leaflet', 'sp',
  'adehabitatLT', 'depmixS4', 'moveHMM', 'htmltools', 'move',
  'devtools', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'jointseg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgdal', 'rgeos', 'spdep', 'OasisR', 'outliers'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'plyr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'flowMerge', 'flowClust', 'flowCore', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'foreach', 'glue'

Packages suggested but not available for checking:
  'testthat', 'doParallel', 'knitr', 'rmarkdown', 'tidyr', 'tibble',
  'dplyr', 'lubridate', 'magrittr', 'rdwd', 'purrr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'sf', 'units'

Packages suggested but not available for checking: 'dplyr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'iterators', 'doParallel', 'fGarch', 'corpcor',
  'mvtnorm', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sp', 'splancs'

Packages suggested but not available for checking:
  'spdep', 'spgrass6', 'rgdal'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'vegan'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'dplyr', 'ggplot2',
  'tidycensus', 'tigris'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pedtools', 'pedprobr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DBI', 'RSQLite', 'magrittr', 'tibble', 'purrr', 'dplyr'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'arm', 'pbapply', 'DescTools', 'patchwork', 'ggpubr',
  'ggplot2', 'knitr', 'rlang', 'magrittr', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
get.infectiousness: no visible global function definition for 'qchisq'
Undefined global functions or variables:
  qchisq
Consider adding
  importFrom("stats", "qchisq")
to your NAMESPACE file.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DBI', 'dplyr', 'tidyr', 'factoextra', 'RPostgreSQL', 'rvest',
  'stringi', 'XML', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Namespace in Imports field not imported from: 'MASS'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'lars', 'glmnet', 'igraph', 'msgps', 'Rfast', 'Cascade', 'varbvs',
  'spls', 'abind'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mixOmics', 'CascadeData'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'rmarkdown', 'markdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'glmnet', 'intervals', 'adaptMCMC', 'Rcpp'

Package suggested but not available for checking: 'Rmpfr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'DEoptim'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rsolnp', 'latticeExtra', 'ade4', 'FD'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'R6'

Packages suggested but not available for checking:
  'testthat', 'XML', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'ecespa', 'spatstat.geom', 'spatstat.core',
  'spatstat.random'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking: 'Ecdat', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'xml2', 'magrittr', 'whisker'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'data.table', 'testthat', 'covr', 'RSauceLabs'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pwr', 'plyr', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'xgboost', 'Rcpp', 'CompareCausalNetworks', 'bnlearn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glasso', 'Rmixmod', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shiny.semantic', 'htmltools', 'glue', 'checkmate'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'shinydashboard', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fields', 'PerformanceAnalytics', 'DescTools', 'msos'

Package suggested but not available for checking: 'kernlab'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sem'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinyAce', 'lavaan', 'semPlot', 'dplyr', 'semTools',
  'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gsl', 'lme4'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'markdown', 'piecewiseSEM', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'lavaan', 'cate', 'corpcor', 'dagitty', 'diffusr', 'flip',
  'gdata', 'ggm', 'GGMncv', 'glmnet', 'graph', 'leaps', 'pbapply',
  'protoclust', 'RcppEigen', 'Rgraphviz'

Packages suggested but not available for checking:
  'huge', 'pcalg', 'SILGGM', 'org.Hs.eg.db'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CORElearn', 'RSNNS', 'fpc', 'timeDate', 'robustbase', 'ks',
  'logspline', 'mcclust', 'flexclust', 'StatMatch'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Formula'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R.oo', 'R.methodsS3', 'igraph', 'R.utils'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'numDeriv', 'purrr', 'rlang', 'testthat', 'BB',
  'nleqslv', 'splines2'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'SemiEstimate-Ex.R' failed
The error most likely occurred in:

> ### Name: semislv
> ### Title: Solve Semi-parametric estimation by implicit profiling
> ### Aliases: semislv
> 
> ### ** Examples
> 
> Phi_fn <- function(theta, lambda, alpha) 2 * theta + alpha * lambda
> Psi_fn <- function(theta, lambda, alpha) 2 * lambda + alpha * theta
> # build quasi jacobiean by package NumDeriv
> res <- semislv(1, 1, Phi_fn, Psi_fn, alpha = 1)
Error in loadNamespace(x) : there is no package called 'rlang'
Calls: semislv ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'numDeriv', 'Rsolnp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'glue', 'knitr', 'testthat', 'rmarkdown', 'DiagrammeR',
  'DiagrammeRsvg', 'webp'

Packages which this enhances but not available for checking:
  'rsvg', 'semPlot', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'lubridate', 'leaflet', 'magrittr', 'urlshorteneR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SemNetDictionaries', 'stringdist', 'searcher', 'readxl', 'R.matlab',
  'stringi', 'rstudioapi', 'easycsv', 'shiny', 'editData', 'miniUI'

Packages suggested but not available for checking:
  'knitr', 'htmlTable', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'easycsv', 'knitr'

Packages suggested but not available for checking:
  'htmlTable', 'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pbapply', 'dplyr', 'plyr', 'RColorBrewer', 'purrr', 'magrittr',
  'ggplot2', 'igraph', 'qgraph', 'scales', 'car', 'broom', 'effects',
  'philentropy'

Packages suggested but not available for checking:
  'shiny', 'shinyjs', 'shinyalert', 'shinyMatrix', 'shinyBS',
  'spreadr', 'animation', 'R.matlab', 'readxl', 'data.table'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lavaan'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'qgraph', 'lavaan', 'sem', 'plyr', 'XML', 'igraph', 'lisrelToR',
  'rockchalk', 'colorspace', 'corpcor', 'OpenMx'

Package suggested but not available for checking: 'MplusAutomation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'XML', 'sem', 'matrixcalc'
'library' or 'require' calls in package code:
  'XML' 'boot' 'sem'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported objects imported by ':::' calls:
  'boot:::const' 'stats:::AIC.logLik' 'stats:::BIC.logLik'
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'addPath.plsm' 'endogenous' 'predecessors' 'qSquared' 'reorder'
  'resempls' 'residuals.sempls'
Package unavailable to check Rd xrefs: 'sem'
Running examples in 'semPLS-Ex.R' failed
The error most likely occurred in:

> ### Name: read.splsm
> ### Title: Import of XML Model Description Specified in SmartPLS
> ### Aliases: read.splsm
> 
> ### ** Examples
> 
> # getting the path to file: 'ECSI_Tenenhaus.splsm' (generated by SmartPLS)
> ptf <- system.file("SmartPLS", "workspace", "ecsi", "ECSI_Tenenhaus.splsm",
+                    package="semPLS")
> 
> # creating the model specification to use with 'sempls()'.
> ECSI <- read.splsm(ptf)
Loading required package: XML
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'XML'
Error in read.splsm(ptf) : Package 'XML' is required.
Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'lavaan'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'dplyr', 'lavaan', 'rlang'

Packages suggested but not available for checking:
  'semPlot', 'testthat', 'knitr', 'rmarkdown', 'magrittr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mi'

Packages suggested but not available for checking: 'polycor', 'DiagrammeR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Package required but not available: 'lavaan'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'np', 'gamlss', 'moments', 'doParallel', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'kutils', 'xtable', 'lavaan', 'plyr', 'stationery'

Package suggested but not available for checking: 'rockchalk'

VignetteBuilder package required for checking but not installed: 'stationery'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lavaan', 'pbivnorm'

Packages suggested but not available for checking:
  'Amelia', 'mice', 'GPArotation', 'mnormt', 'blavaan', 'emmeans',
  'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'OpenMx', 'bitops', 'sets', 'digest', 'rpart.plot', 'plotrix',
  'stringr', 'lavaan', 'ggplot2', 'tidyr', 'strucchange', 'sandwich',
  'zoo', 'crayon', 'clisymbols', 'future.apply'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'viridis', 'psychTools', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'assertthat'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'foreach'

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'stars', 'data.table', 'raster', 'rgdal', 'XML', 'jsonlite',
  'geojsonio', 'foreach', 'doParallel', 'httr', 'RcppTOML'

Packages suggested but not available for checking:
  'leaflet', 'leafpm', 'mapedit', 's2', 'shiny', 'shinyFiles',
  'shinydashboard', 'shinyjs', 'shinyWidgets', 'spelling',
  'geojsonlint', 'httptest', 'knitr', 'markdown', 'rmarkdown', 'sys',
  'units', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'httr', 'jsonlite', 'usethis', 'cli', 'base64enc',
  'emayili'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'base64enc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'png', 'stargazer'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'mlr3', 'mlr3learners', 'mlr3filters', 'mlr3pipelines', 'mlr3viz',
  'paradox', 'mlr3tuning', 'bbotk', 'tictoc', 'forcats', 'readr',
  'lubridate', 'purrr', 'Metrics', 'data.table', 'visNetwork'

Packages suggested but not available for checking:
  'xgboost', 'ranger', 'kknn', 'glmnet', 'e1071', 'mlr3misc',
  'FSelectorRcpp', 'care', 'praznik', 'lme4', 'nloptr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'glue'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'phylolm', 'ggplot2', 'caper', 'phytools', 'geiger'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'BiasedUrn', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'relaimpo', 'splitstackshape', 'ggrepel', 'stringi',
  'plotly'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
gconv: no visible global function definition for 'convolve'
sens.analysis.aberrant.rank: no visible global function definition for
  'pnorm'
sens.analysis.mh: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  convolve pnorm
Consider adding
  importFrom("stats", "convolve", "pnorm")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
plot.sensitivity.2.0d: no visible global function definition for 'gray'
sensitivitySGD: no visible global function definition for 'tail'
sensitivitySGL: no visible global function definition for 'tail'
Undefined global functions or variables:
  gray tail
Consider adding
  importFrom("grDevices", "gray")
  importFrom("utils", "tail")
to your NAMESPACE file.
Packages required but not available:
  'numbers', 'ggplot2', 'Rcpp', 'foreach', 'RcppArmadillo'

Packages suggested but not available for checking:
  'condMVNorm', 'DiceDesign', 'DiceKriging', 'doParallel', 'evd',
  'ggExtra', 'gplots', 'gtools', 'igraph', 'ks', 'mc2d', 'mvtnorm',
  'plotrix', 'pracma', 'randtoolbox', 'RANN', 'reshape2', 'rgl',
  'triangle', 'TSP', 'viridisLite', 'whitening'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'maxLik', 'mvtnorm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'lhs', 'magrittr', 'matrixStats',
  'randtoolbox', 'deSolve', 'Rdpack', 'Rfast', 'rlang', 'scales',
  'stringr', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FactoMineR', 'ggplot2', 'reshape2', 'AlgDesign', 'gtools', 'ggrepel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gtools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'leaps', 'car'
Package required but not available: 'BiasedUrn'

Package suggested but not available for checking: 'sensitivitymw'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jsonlite', 'lubridate', 'plyr', 'ggmap', 'ggplot2', 'R.utils',
  'openssl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'tokenizers.bpe', 'word2vec'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'jsonlite', 'reticulate', 'roperators', 'tensorflow',
  'tfhub', 'xgboost'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'magrittr', 'microbenchmark', 'prettydoc',
  'rappdirs', 'rstudioapi', 'text2vec'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tm', 'qdapDictionaries', 'ngramrr', 'moments', 'stringdist',
  'glmnet', 'spikeslab', 'ggplot2'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'SnowballC', 'XML'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'ggplot2', 'lexicon', 'stringi', 'syuzhet',
  'textclean', 'textshape'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doSNOW', 'foreach', 'snow', 'TSdist', 'tidyr', 'data.table',
  'expint', 'zipfR', 'mclust', 'rlist', 'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'caret', 'data.table', 'foreach', 'ggplot2', 'glmnet', 'ISOweek',
  'quanteda', 'Rcpp', 'RcppRoll', 'RcppParallel', 'stringi',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'covr', 'doParallel', 'e1071', 'lexicon', 'MCS', 'NLP',
  'randomForest', 'stopwords', 'testthat', 'tm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'quanteda', 'data.table', 'foreach', 'future', 'doFuture',
  'doRNG', 'RcppHungarian', 'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'ggplot2', 'ggridges', 'plotly', 'RColorBrewer', 'xts', 'zoo',
  'testthat', 'covr', 'textcat', 'stringr', 'sentometrics', 'spacyr',
  'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'stringr', 'tibble', 'uuid'

Packages suggested but not available for checking:
  'covr', 'httptest', 'mockery', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
Packages required but not available: 'RColorBrewer', 'Hmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'wrapr', 'dplyr', 'rlang', 'tidyr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'clue'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/seqDesignInstructions.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/seqDesignInstructions.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available:
  'Rcpp', 'eventdataR', 'igraph', 'dplyr'

Package suggested but not available for checking: 'xtable'

VignetteBuilder packages required for checking but not installed:
  'xtable', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'geepack', 'mvtnorm', 'VGAM', 'foreach', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'checkmate', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tcltk2', 'Biostrings', 'plotrix', 'plyr', 'phangorn', 'qvalue',
  'widgetTools', 'calibrate', 'ggplot2', 'R2jags', 'coda', 'scales',
  'ape'

Package suggested but not available for checking: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'irlba', 'sva', 'pdist', 'matchingR', 'clue', 'cate'

Packages suggested but not available for checking:
  'covr', 'testthat', 'SummarizedExperiment', 'DESeq2', 'knitr',
  'rmarkdown', 'airway', 'limma', 'qvalue', 'edgeR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'TraMineR'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'FactoMineR', 'GDAtools', 'RColorBrewer',
  'TraMineRextras', 'WeightedCluster', 'ade4', 'questionr',
  'rmdformats', 'dplyr', 'purrr', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gridBase', 'igraph', 'nloptr', 'numDeriv', 'Rcpp', 'TraMineR',
  'RcppArmadillo'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/seqHMM.Rnw'
   'inst/doc/seqHMM_algorithms.Rnw'
   'inst/doc/seqHMM_estimation.Rnw'
   'inst/doc/seqHMM_visualization.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'dHSIC'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ade4', 'segmented'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'doParallel', 'Rcpp'

Packages suggested but not available for checking:
  'testthat', 'doMC', 'rmarkdown', 'knitr'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Biostrings', 'magrittr'

Packages suggested but not available for checking:
  'downloader', 'knitr', 'rmarkdown', 'GenomicAlignments',
  'GenomicRanges', 'IRanges', 'muscle', 'Rsamtools', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'SKAT'
GNU make is a SystemRequirements.
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > ## follow http://adv-r.had.co.nz/Testing.html
  > print(sprintf("Test seqminer [version %s]", packageVersion("seqminer")))
  [1] "Test seqminer [version 8.4]"
  > print("Platform")
  [1] "Platform"
  > print(str(.Platform))
  List of 8
   $ OS.type   : chr "windows"
   $ file.sep  : chr "/"
   $ dynlib.ext: chr ".dll"
   $ GUI       : chr "RTerm"
   $ endian    : chr "little"
   $ pkgType   : chr "win.binary"
   $ path.sep  : chr ";"
   $ r_arch    : chr "x64"
  NULL
  > 
  > print("Sys.info()")
  [1] "Sys.info()"
  > print(Sys.info())
          sysname         release         version        nodename         machine 
        "Windows"    "Server x64"   "build 20348"  "AA72B55F2BB7"        "x86-64" 
            login            user  effective_user 
  "ContainerUser" "ContainerUser" "ContainerUser" 
  > 
  > print(citation("seqminer"))
  
  To cite package 'seqminer' in publications use:
  
    Zhan X, Liu D (2015). "SEQMINER: An R-Package to Facilitate the
    Functional Interpretation of Sequence-Based Associations." _Genetic
    Epidemiology_, *39*(8), 1242.
    \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1002/gepi.21918")},
    seqminer version 8.4, <URL: http://dx.doi.org/10.1002/gepi.21918>.
  
  A BibTeX entry for LaTeX users is
  
    @Article{,
      title = {SEQMINER: An R-Package to Facilitate the Functional Interpretation of Sequence-Based Associations},
      author = {Xiaowei Zhan and Dajiang J Liu},
      journal = {Genetic Epidemiology},
      volume = {39},
      number = {8},
      pages = {1242},
      year = {2015},
      note = {seqminer version 8.4},
      web = {http:/zhanxw.github.io/seqminer},
      publisher = {Wiley Online Library},
      url = {http://dx.doi.org/10.1002/gepi.21918},
      doi = {10.1002/gepi.21918},
    }
  
  > 
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'fitdistrplus', 'ggplot2', 'igraph', 'mvtnorm', 'purrr', 'tibble',
  'Rcpp', 'rlang', 'Rdpack'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
plotenz : addmark: no visible global function definition for 'par'
plotenz : addmark: no visible global function definition for 'text'
plotenz : addmark: no visible global function definition for 'segments'
plotenz : addband: no visible global function definition for 'segments'
plotenz : addband: no visible global function definition for 'text'
plotenz: no visible global function definition for 'layout'
plotenz: no visible global function definition for 'text'
plotenz: no visible global function definition for 'dev.new'
Undefined global functions or variables:
  dev.new layout par segments text
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "layout", "par", "segments", "text")
to your NAMESPACE file.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'rlang', 'slam'

Packages suggested but not available for checking:
  'covr', 'ggplot2', 'knitr', 'microbenchmark', 'pryr', 'rmarkdown',
  'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'RcppProgress', 'selectiveInference'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking: 'testthat', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/sequences.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Sequential'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pbapply', 'squash', 'iotools', 'readr', 'seqminer', 'copynumber'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'rmdformats'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'DBI', 'dplyr', 'dbplyr', 'httr', 'jsonlite', 'htmltools',
  'readr', 'purrr', 'scales', 'stringi', 'tibble', 'magrittr'

Packages suggested but not available for checking:
  'DT', 'stevedore', 'tinytest', 'covr', 'DBItest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'TSP', 'qap', 'gclus', 'colorspace', 'registry'

Packages suggested but not available for checking:
  'DendSer', 'GA', 'Rtsne', 'dbscan', 'umap', 'testthat', 'dendextend',
  'ggplot2', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'ordinal', 'crayon'

Packages suggested but not available for checking:
  'covr', 'testthat', 'VGAM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'httr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'truncnorm', 'Rcpp', 'RcppEigen'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'Hmisc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'data.table', 'dplyr', 'magrittr', 'rlang'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mime', 'httpuv', 'xfun', 'jsonlite'

Packages suggested but not available for checking:
  'later', 'rstudioapi', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lavaan', 'gplots'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'combinat', 'Rdpack'

Package suggested but not available for checking: 'qgraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'cli'

Packages suggested but not available for checking:
  'callr', 'covr', 'mockery', 'reticulate', 'rmarkdown', 'testthat',
  'withr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Title field: should not end in a period.
capture: no visible binding for global variable 'resultText'
restore.session: no visible binding for global variable
  '.save.session.packages'
restore.session: no visible binding for global variable
  '.save.session.search'
save.session: no visible global function definition for 'dev.list'
save.session: no visible binding for '<<-' assignment to
  '.save.session.search'
save.session: no visible binding for '<<-' assignment to
  '.save.session.packages'
Undefined global functions or variables:
  .save.session.packages .save.session.search dev.list resultText
Consider adding
  importFrom("grDevices", "dev.list")
to your NAMESPACE file.
Packages required but not available: 'checkmate', 'ooplah', 'Rcpp', 'R6'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'devtools', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'QCA', 'admisc', 'ggplot2', 'ggrepel', 'stargazer', 'scatterplot3d',
  'fmsb', 'betareg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
setpath: no visible global function definition for 'cov'
setpath: no visible global function definition for 'median'
setpath: no visible global function definition for 'pchisq'
Undefined global functions or variables:
  cov median pchisq
Consider adding
  importFrom("stats", "cov", "median", "pchisq")
to your NAMESPACE file.
Packages required but not available: 'XML', 'data.table', 'igraph'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'do'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
random.number.test: no visible global function definition for 'runif'
random.number.test: no visible global function definition for 'rnorm'
setRNG: no visible global function definition for 'runif'
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Package suggested but not available for checking: 'proxy'
Error(s) in re-building vignettes:
--- re-building 'sets.Rnw' using Sweave

Error: processing vignette 'sets.Rnw' failed with diagnostics:
 chunk 69 
Error in library("proxy") : there is no package called 'proxy'

--- failed re-building 'sets.Rnw'

SUMMARY: processing the following file failed:
  'sets.Rnw'

Error: Vignette re-building failed.
Execution halted
Package required but not available: 'assertive.base'

Packages suggested but not available for checking: 'magrittr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'Rcpp', 'rlang', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cowplot', 'fitdistrplus', 'future', 'future.apply', 'ggplot2',
  'ggrepel', 'ggridges', 'httr', 'ica', 'igraph', 'irlba', 'jsonlite',
  'leiden', 'lmtest', 'matrixStats', 'miniUI', 'patchwork', 'pbapply',
  'plotly', 'png', 'RANN', 'RColorBrewer', 'Rcpp', 'RcppAnnoy',
  'reticulate', 'rlang', 'ROCR', 'Rtsne', 'scales', 'scattermore',
  'sctransform', 'SeuratObject', 'shiny', 'spatstat.core',
  'spatstat.geom', 'tibble', 'uwot', 'RcppEigen', 'RcppProgress'

Packages suggested but not available for checking:
  'ape', 'rsvd', 'testthat', 'hdf5r', 'S4Vectors',
  'SummarizedExperiment', 'SingleCellExperiment', 'MAST', 'DESeq2',
  'BiocGenerics', 'GenomicRanges', 'GenomeInfoDb', 'IRanges',
  'rtracklayer', 'Rfast2', 'monocle', 'Biobase', 'VGAM', 'limma',
  'metap', 'enrichR', 'mixtools', 'ggrastr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'library' or 'require' call to 'graphics' which was already attached by Depends.
  Please remove these calls from your code.
severity: no visible global function definition for 'qnorm'
severity: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  pnorm qnorm
Consider adding
  importFrom("stats", "pnorm", "qnorm")
to your NAMESPACE file.
Packages required but not available: 'cli', 'shiny', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'gmm', 'minpack.lm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
L_exp: no visible global function definition for 'pnorm'
L_hNV: no visible global function definition for 'pnorm'
L_trunc: no visible global function definition for 'pnorm'
L_trunc_mufest: no visible global function definition for 'pnorm'
dgp: no visible global function definition for 'runif'
dgp: no visible global function definition for 'rnorm'
eff.sfa: no visible global function definition for 'predict'
fitted.sfa: no visible global function definition for 'predict'
predict.sfa: no visible global function definition for 'coef'
print.sfa: no visible global function definition for 'coef'
residuals.sfa: no visible global function definition for 'fitted'
sfa: no visible global function definition for 'model.frame'
sfa: no visible global function definition for 'model.response'
sfa.fit: no visible global function definition for 'lm'
sfa.fit: no visible global function definition for 'resid'
sfa.fit: no visible global function definition for 'var'
sfa.fit: no visible global function definition for 'optim'
summary.sfa: no visible global function definition for 'logLik'
summary.sfa: no visible global function definition for 'pchisq'
te.eff.sfa: no visible global function definition for 'residuals'
te.eff.sfa: no visible global function definition for 'pnorm'
u.sfa: no visible global function definition for 'residuals'
u.sfa: no visible global function definition for 'dnorm'
u.sfa: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  coef dnorm fitted lm logLik model.frame model.response optim pchisq
  pnorm predict resid residuals rnorm runif var
Consider adding
  importFrom("stats", "coef", "dnorm", "fitted", "lm", "logLik",
             "model.frame", "model.response", "optim", "pchisq", "pnorm",
             "predict", "resid", "residuals", "rnorm", "runif", "var")
to your NAMESPACE file.
Packages required but not available:
  'dplyr', 'emdbook', 'fBasics', 'Formula', 'gsl', 'marqLevAlg',
  'maxLik', 'moments', 'nleqslv', 'numDeriv', 'primes', 'qrng',
  'randtoolbox', 'trustOptim', 'ucminf'

Package suggested but not available for checking: 'mlogit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sf', 'arrow', 'jsonlite', 'dplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'tidyr', 'triangle', 'zoo', 'sna'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'expm', 'forcats', 'igraph', 'kableExtra', 'magrittr',
  'purrr', 'Rdpack', 'rootSolve', 'rlang', 'tibble', 'tidyr',
  'tidyselect', 'stringr', 'vctrs', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ggraph', 'ggplot2', 'knitr', 'pkgdown', 'rmarkdown', 'RColorBrewer',
  'testthat', 'tidygraph', 'tidyverse', 'networkD3'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'RTriangle', 'sf', 'sp', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'maps', 'rmarkdown', 'viridisLite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DoE.base', 'conf.design', 'R6'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'geometries', 'Rcpp'

Packages suggested but not available for checking:
  'covr', 'knitr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'sf', 'SpatialKDE', 'spdep', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'lubridate', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'crayon', 'dplyr', 'igraph', 'lwgeom', 'rlang', 'sf', 'sfheaders',
  'tibble', 'tidygraph', 'units'

Packages suggested but not available for checking:
  'dbscan', 'fansi', 'ggplot2', 'knitr', 'rmarkdown', 'spatstat.geom',
  'spatstat.linnet', 'spatstat', 'testthat', 'tidyverse', 'TSP', 's2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'dplyr', 'magrittr', 'plotly', 'knitr', 'rmarkdown', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'
Running examples in 'sfo-Ex.R' failed
The error most likely occurred in:

> ### Name: sfo_passengers
> ### Title: SFO Airport Air Traffic Passenger Statistics
> ### Aliases: sfo_passengers
> ### Keywords: SFO airline datasets passengers timeseries
> 
> ### ** Examples
> 
> data(sfo_passengers)
> 
> require(dplyr)
Loading required package: dplyr
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'dplyr'
> 
> # Get summary of total number of passengers by activity type
> # in most recent month
> sfo_passengers %>%
+   filter(activity_period == max(activity_period)) %>%
+   group_by(activity_type_code) %>%
+   summarise(total = sum(passenger_count), .groups = "drop")
Error in sfo_passengers %>% filter(activity_period == max(activity_period)) %>%  : 
  could not find function "%>%"
Execution halted
Packages required but not available:
  'classInt', 'DBI', 'magrittr', 'Rcpp', 's2', 'units'

Packages suggested but not available for checking:
  'blob', 'covr', 'dplyr', 'ggplot2', 'knitr', 'lwgeom', 'maps',
  'mapview', 'microbenchmark', 'odbc', 'pillar', 'pool', 'raster',
  'rlang', 'rmarkdown', 'RPostgres', 'RPostgreSQL', 'RSQLite', 'sp',
  'spatstat', 'spatstat.geom', 'spatstat.random', 'spatstat.linnet',
  'spatstat.utils', 'stars', 'terra', 'testthat', 'tibble', 'tidyr',
  'tidyselect', 'tmap', 'vctrs', 'wk'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'float'

Packages suggested but not available for checking:
  'BGLR', 'float', 'knitr', 'rmarkdown', 'ggplot2', 'reshape2',
  'viridis', 'igraph'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'lokern'

Packages which this enhances but not available for checking:
  'nor1mix', 'polycor', 'sm', 'tikzDevice', 'e1071', 'Hmisc', 'gmp',
  'pastecs', 'polynom', 'robustbase'
Packages unavailable to check Rd xrefs: 'e1071', 'Hmisc', 'gmp', 'pastecs', 'polycor', 'polynom', 'robustbase'
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Package suggested but not available for checking: 'seriation'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sf'

Packages suggested but not available for checking:
  'knitr', 'spacetime', 'rmarkdown', 'dplyr', 'trajectories', 'stars',
  'ncmeta', 'tidyr', 'ggplot2', 'magrittr', 'sp', 'rlang'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'wordspace', 'doParallel', 'ff'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sf'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'adehabitatLT', 'knitr', 'geosphere',
  'scales', 'covr', 'rmarkdown', 'lwgeom'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fda', 'SuppDists'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RSelenium', 'RCurl', 'qdapRegex', 'dplyr', 'stringr', 'data.table',
  'plyr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'GBJ'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'numDeriv', 'alabama'

Packages suggested but not available for checking: 'knitr', 'goftest'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/vignette.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'Rcpp', 'BH', 'bigmemory', 'RcppArmadillo'

Packages suggested but not available for checking:
  'bigmemory', 'glmnet', 'gridExtra', 'R.rsp', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'copula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package unavailable to check Rd xrefs: 'tripack'
Package required but not available: 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Formula', 'AdequacyModel', 'ggplot2', 'plotly', 'moments',
  'gridExtra', 'pracma', 'progress', 'Rcpp', 'plot3D', 'magrittr',
  'TeachingSampling'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'Rcpp', 'RcppProgress', 'RcppArmadillo',
  'BH'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tensorflow', 'reticulate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'ramify', 'Rtauchen'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'glasso', 'mvtnorm', 'tidyr', 'zoo'

Packages suggested but not available for checking:
  'dplyr', 'ModelMetrics', 'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'poibin'

Package suggested but not available for checking: 'discreteMTP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'maps', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'crayon', 'data.table'

Packages suggested but not available for checking:
  'SGP', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mixOmics', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Cairo', 'callr', 'colorspace', 'crayon', 'data.table', 'digest',
  'doParallel', 'doRNG', 'equate', 'foreach', 'gridBase', 'iterators',
  'gtools', 'jsonlite', 'matrixStats', 'plotly', 'quantreg',
  'randomNames', 'rngtools', 'RSQLite', 'sn', 'toOrdinal'

Packages suggested but not available for checking:
  'SGPdata', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'polycor'
amse: no visible global function definition for 'na.omit'
arb: no visible global function definition for 'na.omit'
rdatagen: no visible global function definition for 'qnorm'
rdatagen: no visible global function definition for 'pbinom'
rdatagen: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  na.omit pbinom pnorm qnorm
Consider adding
  importFrom("stats", "na.omit", "pbinom", "pnorm", "qnorm")
to your NAMESPACE file.
Packages required but not available: 'dplyr', 'ggplot2', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'optimx', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'testthat', 'covr', 'ggplot2'

Package which this enhances but not available for checking: 'colorspace'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'sp', 'rgeos', 'raster'

Packages suggested but not available for checking:
  'R.rsp', 'maptools', 'testthat', 'reshape2', 'threejs', 'rgdal'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'scales'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rscala', 'commonsMath'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coneproj', 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
'library' or 'require' call to 'foreign' which was already attached by Depends.
  Please remove these calls from your code.
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mvtnorm', 'mice'
Namespace in Imports field not imported from: 'stats'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Running examples in 'shapeNA-Ex.R' failed
The error most likely occurred in:

> ### Name: barplot.shapeNA
> ### Title: Barplot Showcasing Missingness Proportion of the Original Data
> ### Aliases: barplot.shapeNA
> 
> ### ** Examples
> 
>     S <- toeplitz(seq(1, 0.1, length.out = 3))
>     x <- mvtnorm::rmvt(100, S, df = 5)
Error in loadNamespace(x) : there is no package called 'mvtnorm'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available:
  'sp', 'igraph', 'rgdal', 'landscapemetrics', 'rgeos', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plot3D'

Package suggested but not available for checking: 'geomorph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gplots', 'jpeg', 'pixmap', 'wavethresh', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coneproj', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'minpack.lm', 'scatterplot3d', 'rgl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'xgboost', 'data.table', 'ggforce', 'ggExtra',
  'RColorBrewer', 'ggpubr', 'BBmisc'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'gridExtra', 'here', 'lightgbm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'tidyverse', 'kableExtra'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'reticulate', 'DALEX', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'knitr', 'randomForest', 'testthat', 'markdown', 'qpdf'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'Rcpp', 'condMVNorm', 'mvnfast', 'RcppArmadillo'

Packages suggested but not available for checking:
  'ranger', 'xgboost', 'testthat', 'knitr', 'rmarkdown', 'roxygen2',
  'ggplot2', 'caret', 'gbm', 'party', 'partykit'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ghyp', 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'matrixcalc'

Packages suggested but not available for checking:
  'xtable', 'xts', 'timeSeries', 'quantmod', 'TTR', 'testthat',
  'sandwich', 'txtplot', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/AsymptoticMarkowitz.Rnw'
   'inst/doc/SharpeR.Rnw'
   'inst/doc/SharpeRatio.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'np'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aqp', 'ape', 'soilDB', 'igraph', 'vegan', 'sp', 'reshape2', 'Hmisc',
  'scales', 'circular', 'RColorBrewer', 'plyr', 'digest', 'e1071',
  'stringi', 'curl'

Packages suggested but not available for checking:
  'rgdal', 'spdep', 'circlize', 'rvest', 'xml2', 'rgeos', 'raster',
  'httr', 'jsonlite', 'dendextend', 'testthat', 'hydromad',
  'latticeExtra', 'farver', 'venn', 'gower', 'daymetr', 'elevatr',
  'Evapotranspiration', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'classInt', 'raster', 'spatstat.core', 'spatstat.geom',
  'spatstat.random'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'future', 'future.apply', 'knitr', 'rmarkdown',
  'spatstat', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'dcmle', 'dclone'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FNN', 'pdist', 'slam', 'Ryacas', 'rmarkdown', 'pracma', 'e1071',
  'NMF'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'alakazam', 'ape', 'diptest', 'doParallel', 'dplyr',
  'foreach', 'igraph', 'iterators', 'kedd', 'lazyeval', 'progress',
  'rlang', 'scales', 'seqinr', 'stringi', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'shiny', 'tidyr', 'ggExtra', 'gridExtra', 'scales',
  'rmarkdown', 'shinyMatrix', 'ggridges', 'Hmisc'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'GGally'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rtop', 'zoo', 'ggplot2', 'ggpubr', 'tidyr', 'scales', 'dplyr',
  'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'xlsx', 'bmp', 'tiff'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'digest', 'fastmap', 'formatR', 'httr', 'shiny', 'yaml', 'jsonlite'

Packages suggested but not available for checking:
  'htmltools', 'logger', 'rstudioapi', 'ggplot2', 'ggExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pander'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'Formula'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'AER', 'spelling', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'attempt', 'DT', 'dygraphs', 'ggplot2', 'magrittr', 'plotly'

Packages suggested but not available for checking:
  'covr', 'pkgdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmlwidgets', 'htmltools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'scales', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'knitr', 'shiny', 'uuid'

Packages suggested but not available for checking:
  'colourpicker', 'shinydisconnect'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinyjs', 'dplyr', 'rlang', 'sodium', 'glue'

Packages suggested but not available for checking:
  'DBI', 'RSQLite', 'lubridate', 'shinydashboard', 'testthat',
  'shinytest', 'knitr', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'jsonlite', 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'brms', 'rstan', 'rlang'

Packages suggested but not available for checking:
  'cmdstanr', 'ggplot2', 'shinystan', 'callr', 'rstanarm', 'lme4',
  'testthat', 'shinytest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'shiny', 'jsonlite', 'htmlwidgets'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'shiny', 'reactR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'reactR', 'shiny', 'jsonlite', 'rlang', 'stringr',
  'formatR', 'fontawesome'

Packages suggested but not available for checking: 'testthat', 'V8'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'glue', 'shiny'

Packages suggested but not available for checking:
  'shinydisconnect', 'shinyjs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glue', 'shiny'

Package suggested but not available for checking: 'shinycssloaders'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'htmlwidgets'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'shinydashboard', 'fresh', 'waiter',
  'lifecycle'

Packages suggested but not available for checking:
  'styler', 'shinyAce', 'shinyWidgets', 'shinyEffects', 'shinyjqui',
  'knitr', 'rmarkdown', 'jsonlite'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools', 'promises'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'checkmate', 'glue', 'htmltools', 'shiny'

Package suggested but not available for checking: 'colourpicker'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinyBS', 'shiny', 'shinyjs', 'plotly', 'htmlwidgets', 'htmltools'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'shiny', 'yaml', 'DT', 'R.utils', 'knitr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking:
  'shinydashboard', 'shinydashboardPlus', 'bs4Dash', 'rmarkdown',
  'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'fontawesome', 'htmltools', 'jsonlite', 'shiny'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'jsonlite', 'shiny', 'fs', 'tibble'

Package suggested but not available for checking: 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'reactable', 'shinyBS', 'shinyjs', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'shinyjs', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'heatmaply', 'shiny', 'htmltools', 'plotly', 'dplyr', 'xtable',
  'rmarkdown', 'readxl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'markdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shinyWidgets', 'httr'

Package which this enhances but not available for checking: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'yaml', 'jsonlite', 'stringr', 'R6', 'glue', 'shiny', 'rstudioapi'

Packages suggested but not available for checking:
  'knitr', 'googleLanguageR', 'rmarkdown', 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'EBImage', 'R6', 'shiny', 'shinyjs'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'git2r', 'glue', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'lintr', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'shiny', 'shinydashboard', 'shinycssloaders', 'readxl',
  'mirt', 'psych', 'irtoys'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'difR', 'dplyr', 'ggplot2', 'lme4', 'magrittr', 'mirt', 'psych',
  'rlang', 'rstudioapi', 'tibble', 'tidyr'

Packages suggested but not available for checking:
  'data.table', 'deltaPlotR', 'difNLR', 'DT', 'ggdendro', 'gridExtra',
  'knitr', 'latticeExtra', 'ltm', 'msm', 'plotly', 'purrr',
  'rmarkdown', 'shiny', 'shinyBS', 'shinydashboard', 'shinyjs',
  'stringr', 'VGAM', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'htmlwidgets', 'jsonlite', 'rlang'

Packages suggested but not available for checking:
  'ggplot2', 'highcharter', 'knitr', 'markdown', 'rmarkdown', 'plotly'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'jsonlite', 'shiny'

Packages suggested but not available for checking:
  'htmltools', 'knitr', 'rmarkdown', 'shinyAce', 'shinydisconnect',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pracma', 'pspline', 'shiny', 'shinyjs', 'ggplot2', 'reshape2',
  'gridExtra', 'mvtnorm', 'KGode', 'XML'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'curl', 'dplyr', 'ggplot2', 'httpuv', 'jsonlite', 'magrittr',
  'rlang', 'scales', 'stringr', 'svglite', 'vroom', 'websocket', 'xml2'

Packages suggested but not available for checking:
  'getPass', 'glue', 'gtable', 'htmltools', 'lubridate', 'progress',
  'rmarkdown', 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'shiny', 'jsonlite', 'data.table', 'bit64', 'nanotime',
  'digest', 'anytime'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr', 'DBI', 'RSQLite',
  'googledrive'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'shiny', 'htmltools', 'DT', 'DBI', 'RSQLite', 'openssl',
  'R.utils', 'billboarder', 'scrypt'

Packages suggested but not available for checking:
  'keyring', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite', 'sass'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Packages suggested but not available for checking:
  'shinyjqui', 'shinythemes', 'uchardet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'callr', 'fastmap', 'fs', 'rlang', 'htmltools', 'shiny',
  'sourcetools', 'styler'

Packages suggested but not available for checking:
  'knitr', 'stringr', 'rmarkdown', 'testthat', 'shinyAce', 'clipr',
  'dplyr', 'ggplot2', 'cranlogs', 'xfun', 'magrittr', 'zoo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'data.table', 'shiny', 'argonDash', 'argonR', 'shinyjs',
  'h2o', 'shinyWidgets', 'dygraphs', 'plotly', 'sparklyr', 'tidyr',
  'DT', 'ggplot2', 'shinycssloaders', 'lubridate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'jsonlite', 'magrittr', 'httr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'cli', 'testthat', 'rstudioapi',
  'shinyWidgets', 'apexcharter', 'ggplot2', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'DT', 'generics', 'glue', 'htmltools',
  'magrittr', 'parsnip', 'plotly', 'purrr', 'rlang', 'scales', 'shiny',
  'shinydashboard', 'tidyr', 'tidyselect', 'tune', 'yardstick'

Packages suggested but not available for checking:
  'covr', 'knitr', 'markdown', 'modeldata', 'rmarkdown', 'shinytest',
  'spelling', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'checkmate', 'RDML', 'shiny', 'stringr', 'whisker',
  'plotly', 'RColorBrewer'

Packages suggested but not available for checking: 'knitr', 'chipPCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Packages suggested but not available for checking:
  'shinythemes', 'styler', 'formatR', 'uchardet', 'shinyjqui', 'xml2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinyjs', 'shiny', 'shinyWidgets', 'dplyr', 'DBI', 'dbplyr',
  'RSQLite', 'magrittr', 'stringr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'glue', 'knitr', 'magrittr', 'pander', 'purrr', 'readr',
  'rlang', 'rstudioapi', 'shiny', 'stringr', 'styler', 'tibble',
  'tidyr'

Packages suggested but not available for checking:
  'rmarkdown', 'testthat', 'mockery', 'spelling', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shinyjs', 'shiny', 'shinyBS', 'htmltools', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'glue', 'shiny', 'shinyjs'

Packages suggested but not available for checking: 'rlang', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pivottabler', 'shiny', 'openxlsx', 'colourpicker', 'htmltools'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'shiny', 'ggplot2', 'DT',
  'shinythemes', 'ggthemes', 'Epi'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'shiny', 'htmltools', 'readr', 'urltools'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'shinydashboard', 'shinyWidgets', 'miniUI', 'shinyjs',
  'shinyFiles', 'shinyalert', 'data.table', 'colourpicker', 'plotly',
  'ggplot2', 'stringi', 'stringr', 'styler', 'dplyr', 'reshape2', 'fs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httpuv', 'mime', 'jsonlite', 'xtable', 'fontawesome', 'htmltools',
  'R6', 'sourcetools', 'later', 'promises', 'crayon', 'rlang',
  'fastmap', 'withr', 'commonmark', 'glue', 'bslib', 'cachem',
  'ellipsis', 'lifecycle'

Packages suggested but not available for checking:
  'Cairo', 'testthat', 'knitr', 'markdown', 'rmarkdown', 'ggplot2',
  'reactlog', 'magrittr', 'shinytest', 'yaml', 'future', 'dygraphs',
  'ragg', 'showtext', 'sass'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glue', 'htmltools', 'jsonlite', 'logger', 'rlang', 'shiny'

Packages suggested but not available for checking:
  'knitr', 'leaflet', 'lintr', 'mockery', 'rmarkdown', 'styler',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcapture', 'shiny', 'shinycssloaders', 'conting', 'ggplot2',
  'reshape', 'CARE1', 'dga', 'LCMCR', 'ipc', 'future', 'promises',
  'coda', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'recipes', 'dplyr', 'purrr', 'stringr', 'shiny', 'miniUI',
  'shinyWidgets', 'shinyglide', 'sortable', 'rstudioapi', 'DT',
  'tidyr', 'esquisse'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools', 'R6'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R6', 'shiny', 'dplyr', 'lubridate', 'lifecycle', 'scrypt',
  'shinyjs', 'stringi', 'uuid'

Packages suggested but not available for checking:
  'covr', 'DBI', 'DT', 'devtools', 'emayili', 'gmailr', 'googledrive',
  'googlesheets4', 'knitr', 'rmarkdown', 'RSQLite', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rgl', 'shiny'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'magrittr', 'shiny', 'htmltools'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'shiny', 'shinydashboard', 'tm', 'wordcloud', 'corrplot',
  'randomForest', 'RColorBrewer', 'caret', 'plotly', 'e1071', 'knitr'

Package suggested but not available for checking: 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'base64enc', 'jsonlite', 'shiny', 'uuid'

Package suggested but not available for checking: 'timevis'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'jsonlite'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'reactR', 'shiny', 'fontawesome'

Packages suggested but not available for checking: 'bslib', 'jsTreeR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmltools', 'htmlwidgets', 'purrr', 'magrittr', 'jsonlite',
  'glue', 'R6'

Packages suggested but not available for checking:
  'dplyr', 'tibble', 'knitr', 'testthat', 'lintr', 'DT', 'covr',
  'leaflet', 'plotly', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'digest', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'testthat', 'covr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'tidyr', 'ggplot2', 'shiny', 'deSolve'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'bayesplot', 'colourpicker', 'DT', 'dygraphs', 'ggplot2',
  'gridExtra', 'gtools', 'markdown', 'reshape2', 'rstan', 'shinyjs',
  'shinythemes', 'threejs', 'xtable', 'xts'

Packages suggested but not available for checking:
  'cmdstanr', 'coda', 'knitr', 'posterior', 'rmarkdown', 'rsconnect',
  'rstanarm', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'sass', 'htmltools', 'jsonlite'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tibble'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'readr', 'stringr', 'tidyr', 'visNetwork'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'callr', 'crayon', 'debugme', 'digest', 'htmlwidgets',
  'httpuv', 'httr', 'jsonlite', 'parsedate', 'pingr', 'R6', 'rematch',
  'rlang', 'rstudioapi', 'shiny', 'testthat', 'webdriver', 'withr'

Packages suggested but not available for checking:
  'flexdashboard', 'globals', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'htmltools', 'shiny'

Packages suggested but not available for checking: 'testthat', 'spelling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'reactR', 'shiny', 'fontawesome'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'shiny'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'htmlwidgets', 'jsonlite', 'stringr', 'promises'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'htmltools', 'rlang', 'glue'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bslib', 'sass', 'shiny', 'htmltools', 'jsonlite'

Packages suggested but not available for checking:
  'shinydashboard', 'testthat', 'covr', 'shinydashboardPlus',
  'bs4Dash', 'argonR', 'argonDash', 'tablerDash', 'ggplot2', 'DT',
  'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'future', 'shiny', 'R6'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
shrink.estim: no visible global function definition for 'cov'
shrink.estim: no visible global function definition for 'cor'
shrink.estim: no visible global function definition for 'cov2cor'
targetCor: no visible global function definition for 'cor.test'
targetCor: no visible global function definition for 'cor'
targetCor: no visible global function definition for 'sd'
targetCor: no visible global function definition for 'cov'
targetD: no visible binding for global variable 'var'
targetF: no visible global function definition for 'cov'
targetF: no visible global function definition for 'cor'
targetG: no visible global function definition for 'cor'
targetG: no visible global function definition for 'sd'
targetG: no visible global function definition for 'cov'
targetGpos: no visible global function definition for 'cor'
targetGpos: no visible global function definition for 'sd'
targetGpos: no visible global function definition for 'cov'
targetGstar: no visible global function definition for 'cor'
targetGstar: no visible global function definition for 'sd'
targetGstar: no visible global function definition for 'cov'
Undefined global functions or variables:
  cor cor.test cov cov2cor sd var
Consider adding
  importFrom("stats", "cor", "cor.test", "cov", "cov2cor", "sd", "var")
to your NAMESPACE file.
Package required but not available: 'PBSmapping'

Packages suggested but not available for checking:
  'apcluster', 'ape', 'dbscan', 'e1071', 'effsize', 'ips', 'kernlab',
  'mclust', 'meanShiftR', 'phangorn', 'randomForest', 'smirnov',
  'StatMatch', 'tapkee', 'tree', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glasso', 'mvtnorm', 'capushe', 'GGMselect', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'R6', 'curl', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rstudioapi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'ggplot2', 'tidyr', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'MplusAutomation', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'LambertW', 'tidyr', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'coin', 'CompQuadForm', 'robustbase'

Packages suggested but not available for checking:
  'knitr', 'energy', 'mvoutlier', 'shiny', 'jsonlite', 'interp', 'MBA',
  'bs4Dash'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/shotGroups.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'png'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sysfonts'

Package suggested but not available for checking: 'curl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sysfonts', 'showtextdb'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc', 'curl', 'jsonlite'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'maptools', 'sp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'stochvol', 'coda', 'shrinkTVP', 'RcppArmadillo',
  'RcppProgress'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rms', 'mfp'

Packages suggested but not available for checking:
  'aod', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'GIGrvg', 'stochvol', 'coda', 'zoo', 'RcppArmadillo',
  'RcppProgress'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'fastclime', 'pracma', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking:
  'testthat', 'httptest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'hdrcde', 'coda', 'bayesm', 'mnormt', 'spatstat'

Depends: includes the non-default packages:
  'hdrcde', 'coda', 'MASS', 'bayesm', 'mnormt', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mclust'

Packages suggested but not available for checking: 'edgeR', 'doParallel'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat', 'hdrcde', 'mnormt', 'rjags', 'spatstat.geom',
  'spatstat.utils', 'tidyr', 'dplyr', 'ggplot2', 'magrittr', 'purrr'

Packages suggested but not available for checking:
  'coda', 'ellipse', 'knitr', 'rmarkdown', 'tidyverse', 'viridis'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'minpack.lm', 'fBasics', 'ggplot2'

Packages suggested but not available for checking:
  'covr', 'cowplot', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'tidyr', 'tibble', 'dplyr', 'magrittr', 'purrr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'httr', 'magrittr', 'tibble', 'dplyr', 'cli'

Packages suggested but not available for checking: 'testthat', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'corpcor', 'mmap', 'ade4', 'infotheo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'memoise', 'multicool', 'doParallel', 'foreach'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'network', 'igraph', 'gridBase', 'ggmap', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'RCurl', 'rjson', 'rvest', 'stringr', 'xml2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pcalg', 'igraph', 'RBGL'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages required but not available: 'ramcmc', 'smfsb', 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'pastecs', 'dplyr', 'rlang', 'tidyr', 'tibble', 'purrr', 'glue',
  'tidyselect', 'cpp11'

Packages suggested but not available for checking:
  'knitr', 'ggplot2', 'testthat', 'rmarkdown', 'mopac', 'hms',
  'stringr', 'readr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
.cluster: no visible global function definition for 'kmeans'
.plot.sigclust: no visible global function definition for 'par'
.plot.sigclust: no visible global function definition for 'density'
.plot.sigclust: no visible global function definition for 'runif'
.plot.sigclust: no visible global function definition for 'dnorm'
.plot.sigclust: no visible global function definition for 'lines'
.plot.sigclust: no visible global function definition for 'points'
.plot.sigclust: no visible global function definition for 'title'
.plot.sigclust: no visible global function definition for 'text'
.plot.sigclust: no visible global function definition for 'qnorm'
.plot.sigclust: no visible global function definition for 'abline'
.plot.sigclust: no visible global function definition for 'quantile'
.plot.sigclust: no visible global function definition for 'legend'
.simnull: no visible global function definition for 'rnorm'
.vareigen: no visible global function definition for 'mad'
.vareigen: no visible global function definition for 'cov'
sigclust: no visible global function definition for 'sd'
sigclust: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  abline cov density dnorm kmeans legend lines mad par pnorm points
  qnorm quantile rnorm runif sd text title
Consider adding
  importFrom("graphics", "abline", "legend", "lines", "par", "points",
             "text", "title")
  importFrom("stats", "cov", "density", "dnorm", "kmeans", "mad",
             "pnorm", "qnorm", "quantile", "rnorm", "runif", "sd")
to your NAMESPACE file.
Packages required but not available:
  'formula.tools', 'msm', 'plyr', 'survey'

Packages suggested but not available for checking:
  'car', 'data.table', 'ggplot2', 'kableExtra', 'knitr', 'readxl',
  'reshape2', 'rmarkdown', 'R.rsp'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'randomForest', 'stringr', 'pbivnorm', 'Formula', 'maxLik', 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'dplyr', 'magrittr', 'shiny', 'jsonlite', 'igraph',
  'htmltools', 'purrr', 'scales', 'crosstalk'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmlwidgets', 'igraph', 'jsonlite', 'RColorBrewer'

Packages suggested but not available for checking:
  'magrittr', 'knitr', 'rmarkdown', 'shiny'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'cowplot', 'data.table', 'dplyr', 'furrr', 'future',
  'ggplot2', 'ggpubr', 'maftools', 'magrittr', 'NMF', 'purrr', 'Rcpp',
  'rlang', 'tidyr'

Packages suggested but not available for checking:
  'Biobase', 'Biostrings', 'BSgenome', 'BSgenome.Hsapiens.UCSC.hg19',
  'circlize', 'covr', 'digest', 'GenomicRanges', 'GenSA', 'ggalluvial',
  'ggcorrplot', 'ggfittext', 'ggplotify', 'ggrepel', 'IRanges',
  'knitr', 'lpSolve', 'markdown', 'matrixStats', 'nnls', 'patchwork',
  'pheatmap', 'quadprog', 'R.utils', 'RColorBrewer', 'reticulate',
  'rmarkdown', 'roxygen2', 'scales', 'synchronicity', 'testthat',
  'tibble', 'UCSCXenaTools', 'copynumber'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'ggplot2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'GenomeInfoDb', 'GenomicRanges', 'IRanges', 'Rsamtools', 'S4Vectors',
  'Seurat', 'SeuratObject', 'data.table', 'dplyr', 'future',
  'future.apply', 'ggplot2', 'ggseqlogo', 'irlba', 'pbapply', 'tidyr',
  'patchwork', 'BiocGenerics', 'ggrepel', 'stringi', 'fastmatch',
  'lsa', 'RcppRoll', 'scales', 'Rcpp', 'ggforce', 'qlcMatrix',
  'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'chromVAR', 'SummarizedExperiment', 'TFBSTools',
  'motifmatchr', 'BSgenome', 'shiny', 'miniUI', 'rtracklayer',
  'biovizBase', 'Biostrings'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'neuralnet', 'lme4', 'pbmcapply', 'Seurat', 'RJSONIO', 'igraph',
  'jsonlite', 'RColorBrewer'

Packages suggested but not available for checking:
  'hdf5r', 'rhdf5', 'knitr', 'rmarkdown', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'seqinr', 'shiny', 'Rcpp'

Packages suggested but not available for checking:
  'DT', 'rmarkdown', 'shinythemes'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'pracma'

Package which this enhances but not available for checking: 'matlab'
Package unavailable to check Rd xrefs: 'matlab'
Running examples in 'signal-Ex.R' failed
The error most likely occurred in:

> ### Name: roots
> ### Title: Roots of a polynomial
> ### Aliases: roots
> ### Keywords: math
> 
> ### ** Examples
> 
> roots(1:3)
[1] -1+1.414214i -1-1.414214i
> polyroot(3:1) # should be the same
[1] -1+1.414214i -1-1.414214i
> poly(roots(1:3))
[1] 1+0i 2+0i 3-0i
> 
> roots(1:3, method="eigen") # using eigenvalues
Error in roots(1:3, method = "eigen") : 
  method 'eigen' is only available if package 'pracma' is installed
Execution halted
Package required but not available: 'reshape2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'car'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
signmedian.test: no visible global function definition for 'median'
signmedian.test: no visible global function definition for 'binom.test'
signmedian.test: no visible global function definition for 'pbinom'
signmedian.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  binom.test median pbinom pnorm
Consider adding
  importFrom("stats", "binom.test", "median", "pbinom", "pnorm")
to your NAMESPACE file.
Packages required but not available: 'igraph', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'ggplot2', 'ggraph', 'knitr', 'rmarkdown',
  'ompr', 'ompr.roi', 'ROI.plugin.glpk', 'ROI'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'survcomp', 'GSVA'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'scales', 'rlang'

Packages suggested but not available for checking:
  'ggplot2', 'dplyr', 'ggrepel', 'testthat', 'knitr', 'rmarkdown',
  'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'slam'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'wrapr'

Packages suggested but not available for checking:
  'pwr', 'knitr', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ape', 'phylobase', 'phyext2', 'RColorBrewer', 'phyloseq', 'vegan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CVXR', 'glmnet', 'Rdpack', 'scalreg', 'qpdf'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sf', 'lme4', 'sp', 'raster', 'ggplot2', 'ggforce', 'fasterize',
  'reshape2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'Hmisc'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'glasso', 'reshape'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'gibble', 'purrr', 'rlang', 'decido', 'tibble', 'unjoin',
  'magrittr', 'gridBase', 'crsmeta'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'sp', 'testthat', 'trip', 'vdiffr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'scalreg', 'glmnet', 'hdi', 'SIS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'hapsim', 'stringr', 'readr'

Packages suggested but not available for checking:
  'knitr', 'prettydoc', 'testthat', 'gplots', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'prettydoc', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'car', 'ggplot2', 'Rdpack', 'spam', 'tidyverse', 'tibble', 'dplyr',
  'magrittr', 'matrixcalc'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'tibble', 'ggplot2', 'tidyr', 'mvtnorm',
  'RColorBrewer', 'Rcpp', 'RcppXPtrUtils', 'coda', 'RcppArmadillo'

Packages suggested but not available for checking: 'GGally', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'multcomp', 'mratios'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quadprog'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'evd'

Packages suggested but not available for checking:
  'bookdown', 'covr', 'gee', 'knitr', 'multgee', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'SimMultiCorrData', 'BB', 'nleqslv', 'mvtnorm', 'VGAM', 'triangle',
  'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'printr', 'bookdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'qtl', 'knitr', 'rmarkdown', 'testthat', 'devtools', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'dplyr', 'sessioninfo', 'beepr', 'pbapply', 'RPushbullet'

Packages suggested but not available for checking:
  'knitr', 'ggplot2', 'tidyr', 'purrr', 'shiny', 'doMPI', 'copula',
  'extraDistr', 'renv', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Deriv'

Packages suggested but not available for checking:
  'deSolve', 'knitr', 'rgl', 'rmarkdown', 'scatterplot3d', 'sm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'alabama', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'deSolve', 'minqa'

Package suggested but not available for checking: 'FME'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'rstream', 'shape'

Package suggested but not available for checking: 'magick'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'pbapply', 'data.table', 'rlang'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'testthat', 'tidyr', 'ggplot2',
  'sandwich'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'nnls', 'cobs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'plot3Drgl', 'plot3D', 'rgl'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgl', 'ade4', 'RColorBrewer', 'scatterplot3d'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'tibble'

Packages suggested but not available for checking:
  'testthat', 'popkin', 'bnpsd', 'kinship2', 'RColorBrewer', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bit64', 'checkmate', 'data.table', 'future.apply', 'httr',
  'memoise', 'progressr', 'RcppSimdJson'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'magrittr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'dplyr', 'purrr', 'broom', 'future.apply'

Packages suggested but not available for checking:
  'knitr', 'lme4', 'testthat', 'shiny', 'e1071', 'ggplot2', 'tidyr',
  'geepack', 'rmarkdown', 'future', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ddst'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rlang', 'dplyr', 'furrr', 'future', 'magrittr', 'purrr', 'tibble',
  'rstudioapi', 'Rdpack', 'tidyr'

Packages suggested but not available for checking:
  'plyr', 'knitr', 'rmarkdown', 'pkgdown', 'covr', 'testthat',
  'kableExtra', 'ggplot2', 'broom'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'stringi', 'BH'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rvinecopulib', 'truncnorm', 'bde', 'ks', 'np', 'extraDistr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'rlang'

Packages suggested but not available for checking:
  'arm', 'ggplot2', 'knitr', 'plyr', 'purrr', 'rmarkdown', 'testthat',
  'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'RcppParallel', 'RcppArmadillo'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'magrittr', 'purrr', 'tibble', 'ggplot2', 'scales',
  'plotly', 'htmlwidgets', 'bigmemory', 'digest', 'ks', 'gganimate',
  'forcats', 'rlang', 'lifecycle', 'progress'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'webshot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'simmer'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'simmer', 'ggplot2', 'DiagrammeR', 'dplyr', 'tidyr', 'scales'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'magrittr', 'BH'

Packages suggested but not available for checking:
  'simmer.plot', 'testthat', 'knitr', 'rmarkdown', 'rticles'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'assertthat', 'dplyr', 'purrr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'foreach', 'Biostrings', 'BSgenome', 'GenomeInfoDb',
  'GenomicRanges', 'IRanges', 'XVector'

Package suggested but not available for checking: 'BSgenome.Hsapiens.UCSC.hg38'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'R2jags', 'ggplot2', 'compositions', 'reshape2', 'viridis',
  'bayesplot', 'checkmate'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'readxl', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvna'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BB', 'nleqslv', 'GenOrd', 'psych', 'VGAM', 'triangle', 'ggplot2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'printr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'deSolve', 'quadprog', 'pracma'

Packages suggested but not available for checking:
  'Rcgmin', 'Rvmmin', 'R.rsp', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'mvtnorm', 'gRbase', 'graph', 'igraph', 'ggm', 'qpgraph', 'R.utils',
  'htmlwidgets', 'shiny', 'shinydashboard'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'clipper', 'topologyGSA'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'data.table', 'foreach'

Packages suggested but not available for checking:
  'ggplot2', 'kableExtra', 'knitr', 'limma', 'precrec', 'rmarkdown',
  'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'ggplot2', 'gridExtra', 'lazyeval', 'stringr',
  'quadprog'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/simPH-overview.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

Package which this enhances but not available for checking: 'batchtools'

VignetteBuilder package required for checking but not installed: 'knitr'
Package unavailable to check Rd xrefs: 'batchtools'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'colorspace', 'dplyr', 'forcats', 'ggplot2', 'magrittr', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'covr', 'devtools', 'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'tidyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'DBI', 'RSQLite', 'rjson'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'mvtnorm'

Packages suggested but not available for checking:
  'coda', 'mockery', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'readr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'verification'
Packages required but not available:
  'data.table', 'mvtnorm', 'SNPRelate', 'gdsfmt'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'digest'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'dplyr', 'forcats', 'ggplot2', 'htmlwidgets', 'leaflet', 'leafem',
  'leafpop', 'kimisc', 'lubridate', 'magrittr', 'plotly', 'purrr',
  'rlang', 'scales', 'sf', 'shiny', 'snakecase', 'stars', 'stringr',
  'tidyr', 'tidyselect', 'viridis'

Packages suggested but not available for checking:
  'DT', 'glue', 'knitr', 'pals', 'palmerpenguins', 'patchwork',
  'rgdal', 'rgeos', 'rmarkdown', 's2', 'shinycssloaders', 'tibble',
  'tidytext'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Formula', 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'magrittr'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'covr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FuzzyNumbers', 'DISTRIB'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'tibble', 'dplyr', 'broom', 'moments'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'emmeans', 'lme4', 'dplyr', 'magrittr', 'tidyselect',
  'tidyr', 'stringr', 'jmvcore'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'tidyverse', 'readr', 'ggpubr',
  'covr', 'cccrm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vcd', 'laeken', 'plyr', 'Rcpp', 'RcppArmadillo', 'e1071',
  'doParallel', 'foreach', 'colorspace', 'VIM', 'party', 'EnvStats',
  'fitdistrplus', 'ranger', 'wrswoR', 'data.table'

Packages suggested but not available for checking:
  'haven', 'microbenchmark', 'stringr', 'testthat', 'surveysd',
  'sampling'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'broom', 'dplyr', 'furrr', 'generics', 'purrr', 'magrittr', 'rlang',
  'tibble', 'tidyr', 'tidyselect'

Packages suggested but not available for checking:
  'testthat', 'ggplot2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'gower'

Packages suggested but not available for checking:
  'tinytest', 'knitr', 'rmarkdown', 'dplyr', 'VIM', 'randomForest',
  'glmnet', 'missForest', 'norm'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Biostrings', 'ShortRead', 'zlibbioc'

Package suggested but not available for checking: 'seqinr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DT'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available:
  'Rcpp', 'ontologyIndex', 'ontologySimilarity', 'ontologyPlot'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'FrF2', 'ggplot2', 'gridExtra', 'jsonlite', 'magrittr', 'miniUI',
  'purrr', 'reshape2', 'rstudioapi', 'scales', 'sfsmisc', 'shiny',
  'tibble', 'tidyr', 'rlang', 'testthat'

Packages suggested but not available for checking:
  'covr', 'knitr', 'pls', 'markdown', 'DoE.base'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'sp', 'mco', 'rgdal'

Packages suggested but not available for checking:
  'adehabitatLT', 'moveHMM', 'rgeos', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'binom', 'iterators', 'pbkrtest', 'plotrix', 'plyr',
  'RLRsim', 'stringr', 'car', 'lmerTest'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'kinship2', 'dplyr'

Packages suggested but not available for checking:
  'doParallel', 'doRNG', 'knitr', 'rmarkdown', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'sfsmisc', 'gridBase', 'colorspace'

Packages suggested but not available for checking:
  'Rmpi', 'Hmisc', 'copula', 'foreach', 'doParallel', 'fGarch',
  'robustbase'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package required but not available: 'lavaan'

Packages suggested but not available for checking:
  'Amelia', 'quantreg', 'semTools', 'OpenMx', 'copula'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'chk', 'future.apply', 'nlist', 'yesno'

Packages suggested but not available for checking:
  'covr', 'future', 'knitr', 'progressr', 'rjags', 'rmarkdown',
  'testthat', 'withr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lavaan', 'mvtnorm', 'tibble', 'magrittr', 'rlang', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2', 'dplyr', 'tidyr', 'forcats',
  'stringr', 'testthat', 'covr', 'badger'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'glue', 'mvnfast', 'mvtnorm', 'Rcpp', 'backports'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'formatR', 'gee', 'ggplot2', 'gridExtra',
  'hedgehog', 'knitr', 'magrittr', 'ordinal', 'pracma', 'rmarkdown',
  'scales', 'testthat', 'gtsummary'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sp', 'raster', 'data.table', 'magrittr', 'progress', 'doParallel',
  'foreach', 'plotly', 'rlang'

Packages suggested but not available for checking:
  'fields', 'rmarkdown', 'flexdashboard', 'shiny', 'crosstalk',
  'htmltools', 'viridis', 'lme4', 'ggplot2', 'INLA', 'rgdal', 'rgeos',
  'knitr', 'bezier'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'BB', 'eha', 'flexsurv', 'knitr', 'rmarkdown', 'rstpm2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages unavailable to check Rd xrefs: 'BB', 'eha', 'flexsurv'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'microbenchmark'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'metafor', 'mvtnorm', 'ICC', 'miscTools', 'car', 'plyr', 'corpcor',
  'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'purrr', 'tidyr', 'tibble', 'vctrs'

Packages suggested but not available for checking:
  'ggplot2', 'knitr', 'broom', 'rmarkdown', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'PRROC'

Packages suggested but not available for checking:
  'popkin', 'testthat', 'knitr', 'rmarkdown', 'bnpsd', 'BEDMatrix'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'scales', 'broom', 'dplyr', 'magrittr', 'purrr', 'tidyr',
  'robcor', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ks', 'mvtnorm'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'dplyr', 'lubridate', 'openair', 'png', 'raster',
  'reshape2', 'reticulate', 'RColorBrewer', 'scales'

Packages suggested but not available for checking:
  'magick', 'contoureR', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'lpSolve', 'pcaPP', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'wBoot'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plyr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'RColorBrewer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'numDeriv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'arrangements', 'matrixStats', 'igraph', 'crqa', 'plot3D', 'pracma'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rstudioapi', 'shiny', 'miniUI', 'sos', 'stringi', 'yaml', 'crayon',
  'cli', 'rematch2'

Packages suggested but not available for checking: 'roxygen2', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'CholWishart', 'withr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'purrr', 'magrittr', 'dplyr', 'tidyr', 'rlang', 'tidyselect'

Packages suggested but not available for checking:
  'spelling', 'shiny', 'ggplot2', 'purrrlyr', 'testthat', 'markdown',
  'knitr', 'rmarkdown', 'prettydoc', 'Kendall', 'kableExtra', 'covr',
  'readxl', 'glue', 'janitor', 'rclipboard'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown', 'prettydoc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape2'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'SummarizedExperiment', 'SingleCellExperiment',
  'SeuratObject', 'Rtsne', 'cowplot', 'testthat', 'wrswoR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'pracma', 'fdrtool'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
plotBGpvalues: no visible global function definition for 'par'
plotBGpvalues: no visible global function definition for 'title'
plotBGpvalues: no visible global function definition for 'axis'
plotBGpvalues: no visible binding for global variable 'abline'
plotBGpvalues: no visible global function definition for 'box'
plotCGpvalues: no visible global function definition for 'par'
plotCGpvalues: no visible global function definition for 'title'
plotCGpvalues: no visible global function definition for 'axis'
plotCGpvalues: no visible binding for global variable 'abline'
plotCGpvalues: no visible global function definition for 'box'
plotDAGpvalues: no visible global function definition for 'par'
plotDAGpvalues: no visible global function definition for 'title'
plotDAGpvalues: no visible global function definition for 'axis'
plotDAGpvalues: no visible binding for global variable 'abline'
plotDAGpvalues: no visible global function definition for 'box'
plotUGpvalues: no visible global function definition for 'par'
plotUGpvalues: no visible global function definition for 'title'
plotUGpvalues: no visible global function definition for 'axis'
plotUGpvalues: no visible binding for global variable 'abline'
plotUGpvalues: no visible global function definition for 'box'
simpvalueVec: no visible binding for global variable 'pnorm'
sinBG: no visible global function definition for 'cov2cor'
sinCG : sinAMP: no visible global function definition for 'cov2cor'
sinCG : sinLWF: no visible global function definition for 'cov2cor'
sinDAG: no visible global function definition for 'cov2cor'
sinUG: no visible global function definition for 'cov2cor'
Undefined global functions or variables:
  abline axis box cov2cor par pnorm title
Consider adding
  importFrom("graphics", "abline", "axis", "box", "par", "title")
  importFrom("stats", "cov2cor", "pnorm")
to your NAMESPACE file.
Packages required but not available:
  'COVIDIBGE', 'PNADcIBGE', 'PNSIBGE', 'POFIBGE', 'cli', 'png',
  'purrr', 'rstudioapi', 'tibble'

Packages suggested but not available for checking:
  'convey', 'dplyr', 'httr', 'lavaan.survey', 'magrittr', 'projmgr',
  'RCurl', 'readr', 'readxl', 'srvyr', 'surf', 'survey', 'tidyverse',
  'timeDate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'spatstat', 'spatstat.geom'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/cindex.Rnw'
   'inst/doc/gentle.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'quantreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'psych', 'EFA.MRFA', 'lavaan'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'systemfit', 'psych', 'igraph', 'matrixcalc', 'numDeriv', 'stringr',
  'Rsolnp', 'dplyr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'CDM', 'Rcpp', 'TAM', 'pbv', 'RcppArmadillo'

Packages suggested but not available for checking:
  'coda', 'igraph', 'lavaan', 'lavaan.survey', 'miceadds', 'mirt',
  'mvtnorm', 'pbivnorm', 'pbv', 'psych', 'sfsmisc', 'sm', 'survey'

Package which this enhances but not available for checking: 'immer'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'ROCR', 'ggplot2', 'glmnet', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'digest', 'R.matlab', 'R.methodsS3'

Packages suggested but not available for checking:
  'graph', 'Rgraphviz', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'zoo', 'raster'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'doParallel', 'expm', 'RSpectra', 'glmnet'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'ncvreg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'openxlsx', 'rlang', 'shiny', 'stringi', 'stringr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'BlandAltmanLeh', 'dplyr', 'ggbeeswarm', 'ggplot2', 'ggrepel',
  'rlang', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lars'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'forcats', 'ggplot2', 'glue', 'purrr', 'rlang', 'rsample',
  'tibble', 'tidyr', 'magrittr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmulti', 'solaR', 'hyfo', 'hydroGOF', 'RColorBrewer', 'ggplot2',
  'ggpubr'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'plotrix'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'dplyr', 'ymlthis', 'magrittr', 'yaml', 'stringr',
  'lubridate', 'rmarkdown', 'rlist', 'purrr'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'spelling', 'pkgdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'scatterplot3d'

Packages suggested but not available for checking:
  'rgl', 'igraph', 'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'data.table', 'sitree'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'data.table'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'doParallel', 'foreach', 'glmnet', 'pROC', 'varhandle'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'nortest', 'e1071', 'scales', 'testthat',
  'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'msm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'MCMCpack', 'matrixStats'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'dplyr', 'ggplot2'
Running examples in 'SiZer-Ex.R' failed
The error most likely occurred in:

> ### Name: Arkansas
> ### Title: Time Series of Macroinvertabrates Abundance in the Arkansas
> ###   River.
> ### Aliases: Arkansas
> ### Keywords: datasets
> 
> ### ** Examples
> 
> require(ggplot2)
Loading required package: ggplot2
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'ggplot2'
> 
> data(Arkansas)
> ggplot(Arkansas, aes(x=year, y=sqrt.mayflies)) + 
+    geom_point()
Error in ggplot(Arkansas, aes(x = year, y = sqrt.mayflies)) : 
  could not find function "ggplot"
Execution halted
Package required but not available: 'rJava'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'insight'

Packages suggested but not available for checking:
  'dplyr', 'haven', 'magrittr', 'sjmisc', 'sjPlot', 'knitr', 'rlang',
  'rmarkdown', 'snakecase', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'insight', 'magrittr', 'purrr', 'rlang', 'sjlabelled',
  'tidyselect'

Packages suggested but not available for checking:
  'ggplot2', 'haven', 'mice', 'sjPlot', 'sjstats', 'knitr',
  'rmarkdown', 'stringdist', 'testthat', 'tidyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayestestR', 'datawizard', 'dplyr', 'effectsize', 'ggeffects',
  'ggplot2', 'knitr', 'insight', 'parameters', 'performance', 'purrr',
  'rlang', 'scales', 'sjlabelled', 'sjmisc', 'sjstats', 'tidyr'

Packages suggested but not available for checking:
  'brms', 'car', 'clubSandwich', 'cowplot', 'haven', 'GPArotation',
  'ggrepel', 'glmmTMB', 'gridExtra', 'ggridges', 'httr', 'lme4',
  'nFactors', 'pscl', 'psych', 'rmarkdown', 'rstanarm', 'sandwich',
  'survey', 'TMB', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'reticulate', 'mvtnorm', 'rstudioapi', 'abind', 'Metrics', 'Ternary',
  'cli', 'crayon', 'ggplot2', 'checkmate', 'mathjaxr', 'ggtern'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'bayestestR', 'broom', 'dplyr', 'effectsize', 'emmeans', 'insight',
  'lme4', 'magrittr', 'modelr', 'parameters', 'performance', 'purrr',
  'rlang', 'sjlabelled', 'sjmisc', 'tidyr'

Packages suggested but not available for checking:
  'brms', 'car', 'coin', 'ggplot2', 'pscl', 'pwr', 'sjPlot', 'survey',
  'rstan', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'dplyr', 'tidyr', 'readr', 'purrr', 'kinship2', 'corrr',
  'tibble', 'rlang'

Packages suggested but not available for checking:
  'rmarkdown', 'markdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SPAtest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'parallel'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
cvskda: no visible global function definition for 'detectCores'
cvskda: no visible global function definition for 'makeCluster'
cvskda: no visible global function definition for 'clusterApplyLB'
cvskda: no visible global function definition for 'mclapply'
cvskda: no visible global function definition for 'stopCluster'
Undefined global functions or variables:
  clusterApplyLB detectCores makeCluster mclapply stopCluster
Packages required but not available:
  'Rdpack', 'broom', 'pracma', 'gmp', 'Rmpfr', 'arrangements',
  'cubature', 'quantreg', 'CompQuadForm', 'bazar', 'expm',
  'data.table', 'mvtnorm'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'lmtest', 'car', 'tseries',
  'tibble', 'testthat', 'mlbench'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'covr', 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'VGAM'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/skellam.rnw'
(Is a VignetteBuilder field missing?)
Package unavailable to check Rd xrefs: 'VGAM'
Files named as vignettes but with no recognized vignette engine:
   'vignettes/skellam.rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available:
  'jpeg', 'png', 'readbitmap', 'downloader', 'imager', 'magrittr',
  'stringr', 'dplyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'rlang', 'purrr', 'rstudioapi', 'glue', 'htmltools',
  'base64enc', 'jsonlite', 'shiny'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'knitr', 'stringi', 'crayon', 'packrat', 'git2r'

Packages suggested but not available for checking: 'testthat', 'formatR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'dplyr', 'zipfR', 'optimr', 'purrr', 'matrixStats', 'stringr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DistributionUtils', 'GeneralizedHyperbolic'

Package suggested but not available for checking: 'RUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'optimParallel', 'dplyr', 'ggplot2', 'moments', 'mvtnorm',
  'numDeriv', 'purrr', 'ggrepel', 'furrr', 'future', 'haven'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'foreach', 'moments', 'clusterGeneration', 'doParallel', 'mvtnorm',
  'matrixcalc'

Package suggested but not available for checking: 'sn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Package required but not available: 'matrixcalc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'jsonlite', 'purrr', 'dplyr', 'magrittr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'crayon', 'dplyr', 'knitr', 'magrittr', 'purrr', 'repr',
  'rlang', 'stringr', 'tibble', 'tidyr', 'tidyselect', 'vctrs', 'withr'

Packages suggested but not available for checking:
  'covr', 'data.table', 'dtplyr', 'extrafont', 'lubridate',
  'rmarkdown', 'sf', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'extraDistr', 'hash', 'LaplacesDemon', 'mcmcse', 'numDeriv', 'spam',
  'dfoptim'

Package suggested but not available for checking: 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'slam', 'clue'

Package which this enhances but not available for checking: 'kmndirs'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'magrittr', 'data.table', 'plyr', 'Rcpp', 'RcppParallel',
  'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cli', 'dplyr', 'knitr', 'magrittr', 'modeltime', 'parsnip', 'purrr',
  'rlang', 'rsample', 'tibble', 'tidyr', 'tune'

Packages suggested but not available for checking:
  'earth', 'ggplot2', 'recipes', 'rmarkdown', 'spelling', 'timetk',
  'workflows', 'yardstick', 'workflowsets'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'iterators', 'lme4', 'Rcpp', 'rintrojs', 'shinythemes',
  'foreach', 'doParallel', 'doRNG', 'future', 'promises', 'shinyjs',
  'car', 'viridis', 'magrittr', 'lmerTest', 'lazyeval', 'progress',
  'gt', 'scales', 'RcppEigen'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'rgeos', 'RColorBrewer', 'sp', 'GD', 'rtop', 'FitAR'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'igraph', 'dplyr', 'ggplot2', 'ggrepel', 'stringr',
  'maps', 'httr', 'geosphere', 'leaflet'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'kableExtra', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'EBImage'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'swephR', 'png', 'oce', 'MESS', 'RColorBrewer', 'numDeriv',
  'foreach', 'doParallel', 'rootSolve', 'httr', 'plotrix', 'zoo'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'cachem', 'dplyr', 'ggplot2', 'httr', 'jsonlite', 'magrittr',
  'memoise', 'rlang', 'tibble', 'withr'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'svglite', 'testthat', 'texPreview'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages which this enhances but not available for checking:
  'SparseM', 'spam'
Packages required but not available: 'pheatmap', 'pracma'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'lme4', 'lcmm', 'globaltest', 'magic', 'reshape2', 'ggplot2',
  'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'inline', 'Rcpp', 'RcppArmadillo', 'fda', 'fda.usc', 'matrixcalc',
  'matrixStats', 'plot3D', 'cxxfunplus'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'glmnet', 'corpcor', 'forecast', 'gsarima', 'fGarch', 'imputeTS',
  'MTS', 'TSclust', 'tsoutliers', 'matrixcalc', 'rnn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
slcestimates: no visible global function definition for 'par'
slcestimates: no visible global function definition for 'abline'
slcestimates: no visible global function definition for 'lines'
slcestimates: no visible global function definition for 'axis'
slcestimates: no visible global function definition for 'points'
slcestimates: no visible global function definition for 'title'
Undefined global functions or variables:
  abline axis lines par points title
Consider adding
  importFrom("graphics", "abline", "axis", "lines", "par", "points",
             "title")
to your NAMESPACE file.
Package unavailable to check Rd xrefs: 'RcmdrPlugin.SLC'
'LazyData' is specified without a 'data' directory
Package required but not available: 'lmom'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'reshape2', 'plyr', 'stringr', 'viridis'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'behavr', 'data.table'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'jrc', 'cowplot', 'httpuv', 'jsonlite', 'scales', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo', 'RcppEigen'

Packages suggested but not available for checking:
  'knitr', 'lme4', 'rmarkdown', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'e1071', 'ggplot2', 'ggthemes', 'gridExtra', 'Hmisc', 'reshape2',
  'stringr', 'doParallel', 'caret', 'corrplot', 'foreach'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'data.table', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'agricolae', 'car', 'gmodels', 'leaps', 'mosaic'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/chapter01-HortonMosaic.Rnw'
   'inst/doc/chapter02-HortonMosaic.Rnw'
   'inst/doc/chapter03-HortonMosaic.Rnw'
   'inst/doc/chapter04-HortonMosaic.Rnw'
   'inst/doc/chapter05-HortonMosaic.Rnw'
   'inst/doc/chapter06-HortonMosaic.Rnw'
   'inst/doc/chapter07-HortonMosaic.Rnw'
   'inst/doc/chapter08-HortonMosaic.Rnw'
   'inst/doc/chapter09-HortonMosaic.Rnw'
   'inst/doc/chapter10-HortonMosaic.Rnw'
   'inst/doc/chapter11-HortonMosaic.Rnw'
   'inst/doc/chapter12-HortonMosaic.Rnw'
   'inst/doc/chapter13-HortonMosaic.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/chapter01-HortonMosaic.Rnw'
   'vignettes/chapter02-HortonMosaic.Rnw'
   'vignettes/chapter03-HortonMosaic.Rnw'
   'vignettes/chapter04-HortonMosaic.Rnw'
   'vignettes/chapter05-HortonMosaic.Rnw'
   'vignettes/chapter06-HortonMosaic.Rnw'
   'vignettes/chapter07-HortonMosaic.Rnw'
   'vignettes/chapter08-HortonMosaic.Rnw'
   'vignettes/chapter09-HortonMosaic.Rnw'
   'vignettes/chapter10-HortonMosaic.Rnw'
   'vignettes/chapter11-HortonMosaic.Rnw'
   'vignettes/chapter12-HortonMosaic.Rnw'
   'vignettes/chapter13-HortonMosaic.Rnw'
(Is a VignetteBuilder field missing?)
Skipping vignette re-building
Packages suggested but not available for checking:
  'CCA', 'Hmisc', 'agricolae', 'car', 'gmodels', 'knitr', 'leaps',
  'mosaic', 'multcomp'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/chapter01-HortonMosaic.Rnw'
   'inst/doc/chapter02-HortonMosaic.Rnw'
   'inst/doc/chapter03-HortonMosaic.Rnw'
   'inst/doc/chapter04-HortonMosaic.Rnw'
   'inst/doc/chapter05-HortonMosaic.Rnw'
   'inst/doc/chapter06-HortonMosaic.Rnw'
   'inst/doc/chapter07-HortonMosaic.Rnw'
   'inst/doc/chapter08-HortonMosaic.Rnw'
   'inst/doc/chapter09-HortonMosaic.Rnw'
   'inst/doc/chapter10-HortonMosaic.Rnw'
   'inst/doc/chapter11-HortonMosaic.Rnw'
   'inst/doc/chapter12-HortonMosaic.Rnw'
   'inst/doc/chapter13-HortonMosaic.Rnw'
(Is a VignetteBuilder field missing?)
Files named as vignettes but with no recognized vignette engine:
   'vignettes/chapter01-HortonMosaic.Rnw'
   'vignettes/chapter02-HortonMosaic.Rnw'
   'vignettes/chapter03-HortonMosaic.Rnw'
   'vignettes/chapter04-HortonMosaic.Rnw'
   'vignettes/chapter05-HortonMosaic.Rnw'
   'vignettes/chapter06-HortonMosaic.Rnw'
   'vignettes/chapter07-HortonMosaic.Rnw'
   'vignettes/chapter08-HortonMosaic.Rnw'
   'vignettes/chapter09-HortonMosaic.Rnw'
   'vignettes/chapter10-HortonMosaic.Rnw'
   'vignettes/chapter11-HortonMosaic.Rnw'
   'vignettes/chapter12-HortonMosaic.Rnw'
   'vignettes/chapter13-HortonMosaic.Rnw'
(Is a VignetteBuilder field missing?)
Packages required but not available: 'Rcpp', 'coda', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'fda', 'fdapace', 'psych'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rdpack', 'numDeriv'

Packages suggested but not available for checking:
  'knitr', 'captioner', 'formatR', 'rcrossref', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'alphahull', 'igraph', 'lle'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'lifecycle', 'xml2', 'base64enc', 'htmlwidgets'

Packages suggested but not available for checking:
  'jsonlite', 'knitr', 'pdftools', 'rmarkdown', 'svglite', 'leaflet',
  'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'ellipsis', 'glue', 'rlang', 'vctrs', 'warp'

Packages suggested but not available for checking:
  'covr', 'dplyr', 'knitr', 'lubridate', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'htmltools', 'htmlwidgets', 'raster', 'viridisLite'

Package suggested but not available for checking: 'jpeg'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DCCA', 'PerformanceAnalytics', 'nonlinearTseries', 'TSEntropies'

Packages suggested but not available for checking: 'xts', 'zoo', 'quantmod'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'data.table'

Packages suggested but not available for checking:
  'lme4', 'jmcm', 'gee', 'ggplot2', 'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'assertthat', 'glmnet', 'bigmemory', 'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'purrr', 'png'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ROCR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ltsa', 'capushe', 'sandwich', 'expm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crayon', 'purrr', 'rlang', 'tibble'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'foreach', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'caret', 'covr', 'glmnet', 'ggplot2', 'stringr', 'scales', 'tidyr',
  'dplyr', 'bench', 'knitr', 'rmarkdown', 'spelling', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'crayon', 'ape', 'memoise'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SnowballC', 'NLP', 'openNLP'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'gam'
Package unavailable to check Rd xrefs: 'gam'
Running examples in 'slp-Ex.R' failed
The error most likely occurred in:

> ### Name: slp.gam
> ### Title: Generate a Basis Matrix for Discrete Prolate Spheroidal
> ###   (Slepian) Sequences
> ### Aliases: slp.gam slp
> ### Keywords: models smooth regression Slepian gam
> 
> ### ** Examples
> 
>     # Examples using pkg:gam
>     library("gam")
Error in library("gam") : there is no package called 'gam'
Execution halted
Packages required but not available: 'geepack', 'VGAM', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'tinytest'

VignetteBuilder package required for checking but not installed: 'knitr'
Package suggested but not available for checking: 'hitandrun'
Package unavailable to check Rd xrefs: 'hitandrun'
Packages required but not available:
  'plotrix', 'colorspace', 'e1071', 'polynom', 'Hmisc', 'nnls',
  'weights', 'ellipse', 'wordcloud', 'candisc', 'foreach', 'doParallel'

Packages suggested but not available for checking:
  'knitr', 'prefmod', 'MPsychoR', 'calibrate', 'ggplot2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/smacof.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'spatstat.geom', 'spatstat.random', 'spatstat.core', 'smerc',
  'plotrix', 'abind', 'pbapply', 'sp'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'SSBtools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra', 'sdcHierarchies', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'nloptr', 'Rcpp', 'RcppParallel', 'doParallel', 'foreach', 'doSNOW',
  'numDeriv', 'EnvStats', 'RcppGSL'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'httr', 'rappdirs', 'raster', 'rhdf5', 'rvest', 'xml2'

Packages suggested but not available for checking:
  'knitr', 'rgdal', 'rmarkdown', 'roxygen2', 'sp', 'testthat', 'covr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'LaplacesDemon'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'knitr'

Package suggested but not available for checking: 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'sampling', 'scales', 'rmarkdown', 'ISLR', 'data.table',
  'gridExtra', 'GGally', 'qpdf'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'covr', 'psych', 'DataExplorer'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'httr', 'htmltools', 'jsonlite', 'rjson'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'leaflet', 'magrittr', 'sf'

Packages suggested but not available for checking: 'covr', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'plyr', 'futile.logger', 'FNN', 'stinepack', 'zoo'

Packages suggested but not available for checking:
  'stringr', 'knitr', 'rmarkdown', 'ROCR', 'randomForest', 'caret',
  'dplyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'covr', 'sn', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'bootSVD', 'data.table', 'foreach', 'Rfast', 'RSpectra', 'vegan',
  'vroom', 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sva', 'isva', 'RSpectra', 'Rcpp', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'sqldf', 'partykit', 'Formula', 'gsubfn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'PMA', 'pbapply', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'VGAM', 'rlang', 'checkmate', 'abind'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mitools', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
File 'smco/R/smco.R':
  .onAttach calls:
    cat(paste("This is smco package", version, "\n"))

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

smco: no visible global function definition for 'runif'
smco: no visible global function definition for 'rnorm'
smco: no visible global function definition for 'qnorm'
smco: no visible global function definition for 'pnorm'
smco: no visible global function definition for 'optim'
Undefined global functions or variables:
  optim pnorm qnorm rnorm runif
Consider adding
  importFrom("stats", "optim", "pnorm", "qnorm", "rnorm", "runif")
to your NAMESPACE file.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
em: no visible global function definition for 'coxph'
em: no visible global function definition for 'optim'
plotpredictsmcure: no visible global function definition for 'matplot'
plotpredictsmcure: no visible global function definition for 'lines'
smcure: no visible binding for global variable 'na.omit'
smcure: no visible global function definition for 'model.frame'
smcure: no visible global function definition for 'model.extract'
smcure: no visible global function definition for 'model.matrix'
smcure: no visible global function definition for 'coxph'
smcure: no visible global function definition for 'survreg'
smcure: no visible binding for global variable 'var'
smcure: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  coxph lines matplot model.extract model.frame model.matrix na.omit
  optim pnorm survreg var
Consider adding
  importFrom("graphics", "lines", "matplot")
  importFrom("stats", "model.extract", "model.frame", "model.matrix",
             "na.omit", "optim", "pnorm", "var")
to your NAMESPACE file.
Packages required but not available:
  'GSVA', 'samr', 'e1071', 'preprocessCore', 'pheatmap', 'maftools',
  'survminer', 'pracma', 'quadprog', 'RColorBrewer', 'backports'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'stddiff', 'tableone', 'knitr', 'dplyr', 'purrr',
  'markdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Grad.sph: no visible global function definition for 'dist'
IMDS: no visible global function definition for 'cmdscale'
IMDS: no visible global function definition for 'as.dist'
IMDS: no visible global function definition for 'runif'
IMDS: no visible global function definition for 'optim'
idistSph: no visible global function definition for 'dist'
obj.sph: no visible global function definition for 'dist'
plot.imds: no visible binding for global variable 'lines'
plot.imds: no visible global function definition for 'text'
plot.imds: no visible global function definition for 'rect'
Undefined global functions or variables:
  as.dist cmdscale dist lines optim rect runif text
Consider adding
  importFrom("graphics", "lines", "rect", "text")
  importFrom("stats", "as.dist", "cmdscale", "dist", "optim", "runif")
to your NAMESPACE file.
Packages required but not available:
  'MESS', 'pbapply', 'randtoolbox', 'sp', 'Rcpp', 'RcppProgress'

Packages suggested but not available for checking:
  'crayon', 'lintr', 'maps', 'testthat', 'SpatialEpi', 'knitr',
  'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ggplot2', 'reshape', 'corpcor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggplot2'

VignetteBuilder package required for checking but not installed: 'knitr'
'LazyData' is specified without a 'data' directory
Packages required but not available: 'pracma', 'fs', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'abind'

Package suggested but not available for checking: 'deSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ineq', 'truncnorm', 'lme4', 'MuMIn', 'formula.tools', 'mvtnorm',
  'Hmisc', 'laeken', 'weights'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mlmRev', 'R.rsp', 'Kernelheaping'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'testthat'
Malformed Description field: should contain one or more complete sentences.
lines.SmithWilsonYieldCurve: no visible global function definition for
  'lines'
points.SmithWilsonYieldCurve: no visible global function definition for
  'points'
Undefined global functions or variables:
  lines points
Consider adding
  importFrom("graphics", "lines", "points")
to your NAMESPACE file.
Running 'testall.R'
Running the tests in 'tests/testall.R' failed.
Complete output:
  > library( "testthat" )
  Error in library("testthat") : there is no package called 'testthat'
  Execution halted
Packages required but not available: 'ggplot2', 'sf', 'Biostrings'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'htmlwidgets', 'yaml', 'jsonlite', 'magrittr'

Packages suggested but not available for checking:
  'SMITIDstruct', 'knitr', 'shiny', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'matrixcalc', 'mvnfast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'RcppArmadillo'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'seqinr', 'DiscreteWeibull'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DiscreteWeibull', 'Rcpp', 'seqinr', 'RcppArmadillo'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'XML', 'tibble', 'curl', 'rvest', 'xml2'

Packages suggested but not available for checking:
  'testthat', 'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'PerformanceAnalytics'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'SSN', 'RSQLite', 'spam'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'foreach', 'doParallel', 'dplyr', 'tidyr', 'magrittr',
  'ggplot2', 'Rdpack', 'rmarkdown', 'RcppArmadillo'

Packages suggested but not available for checking: 'roxygen2', 'pkgdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ParamHelpers', 'checkmate', 'BBmisc', 'ggplot2', 'RColorBrewer',
  'plot3D', 'plotly', 'mco', 'Rcpp', 'RJSONIO', 'RcppArmadillo'

Packages suggested but not available for checking: 'testthat', 'rPython'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'quantreg', 'SparseM', 'lmtest', 'rgl', 'colorspace'

Packages suggested but not available for checking: 'testthat', 'demography'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'TTR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'prodlim', 'lava', 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'SpatialVx', 'fields'
'library' or 'require' call to 'MASS' which was already attached by Depends.
  Please remove these calls from your code.
Packages required but not available:
  'greybox', 'Rcpp', 'pracma', 'statmod', 'nloptr', 'zoo',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'numDeriv', 'testthat', 'knitr', 'rmarkdown', 'doMC', 'doParallel',
  'foreach'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ks'

Package suggested but not available for checking: 'KMsurv'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'raster', 'rgeos', 'sf', 'units'

Packages suggested but not available for checking:
  'covr', 'knitr', 'lwgeom', 'rmarkdown', 'sp', 'terra', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'logcondens'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rTensor'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rfast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'future', 'future.apply', 'progressr', 'progress',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'fGarch', 'RcppArmadillo', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'FNN', 'dbscan', 'igraph'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'rpanel'

Packages suggested but not available for checking:
  'knitr', 'numDeriv', 'revdbayes', 'tkrplot', 'testthat', 'rmarkdown',
  'SuppDists'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'imager', 'ggplot2', 'stringr'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat', 'dplyr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'ellipse'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking:
  'rgl', 'misc3d', 'akima', 'gam', 'tkrplot', 'rpanel'
Running examples in 'sm-Ex.R' failed
The error most likely occurred in:

> ### Name: sm.surface3d
> ### Title: Adding a regression surface to an rgl plot.
> ### Aliases: sm.surface3d
> ### Keywords: nonparametric regression smooth
> 
> ### ** Examples
> 
> with(trawl, {
+    Zone93    <- (Year == 1 & Zone == 1)
+    Position  <- cbind(Longitude - 143, Latitude)
+    model1 <- sm.regression(Position[Zone93,], Score1[Zone93],
+         h= c(0.1, 0.1), display = "rgl", xlab="Longitude - 143")
+    model2 <- sm.regression(Position[Zone93,], Score1[Zone93],
+         h= c(0.2, 0.2), display = "none")
+    sm.surface3d(model2$eval.points, model2$est, model1$scaling, col = "red")
+ })
Error in sm.surface3d(model2$eval.points, model2$est, model1$scaling,  : 
  a scaling must be specified.
Calls: with -> with.default -> eval -> eval -> sm.surface3d
Execution halted
Malformed Description field: should contain one or more complete sentences.
dNMR: no visible global function definition for 'pnorm'
dNMR: no visible global function definition for 'dnorm'
pNMR: no visible global function definition for 'pnorm'
pNMR: no visible global function definition for 'dnorm'
rMR: no visible global function definition for 'rnorm'
rMR: no visible global function definition for 'rchisq'
Undefined global functions or variables:
  dnorm pnorm rchisq rnorm
Consider adding
  importFrom("stats", "dnorm", "pnorm", "rchisq", "rnorm")
to your NAMESPACE file.
Packages required but not available: 'doParallel', 'foreach', 'iterators'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'devtools'
Packages required but not available:
  'catdata', 'glmnet', 'RColorBrewer', 'Rcpp', 'speedglm',
  'RcppArmadillo'

Packages suggested but not available for checking:
  'bookdown', 'knitr', 'rmarkdown', 'roxygen2', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'Rcpp', 'SKAT', 'RcppEigen'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
SMVar.paired : <anonymous>: no visible global function definition for
  'var'
SMVar.paired: no visible global function definition for 'var'
SMVar.paired: no visible global function definition for 'pt'
SMVar.paired: no visible global function definition for 'p.adjust'
SMVar.paired: no visible global function definition for 'write.table'
SMVar.unpaired : <anonymous>: no visible global function definition for
  'var'
SMVar.unpaired: no visible global function definition for 'var'
SMVar.unpaired: no visible global function definition for 'pt'
SMVar.unpaired: no visible global function definition for 'p.adjust'
SMVar.unpaired: no visible global function definition for 'write.table'
Undefined global functions or variables:
  p.adjust pt var write.table
Consider adding
  importFrom("stats", "p.adjust", "pt", "var")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Packages required but not available:
  'fmsb', 'DescTools', 'shiny', 'shinydashboard', 'sortable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggraph', 'graphlayouts', 'igraph', 'formatR', 'miniUI',
  'rstudioapi', 'ggplot2', 'shiny', 'colourpicker', 'DT'

Package suggested but not available for checking: 'ggforce'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'stringr', 'stringi'

Packages suggested but not available for checking:
  'testthat', 'covr', 'tibble', 'purrrlyr', 'knitr', 'rmarkdown',
  'magrittr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Package suggested but not available for checking: 'testthat'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'keras', 'tensorflow', 'dplyr', 'purrr', 'forcats', 'tictoc',
  'readr', 'ggplot2', 'CORElearn', 'dbscan', 'stringr', 'reticulate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'statnet.common', 'network'

Packages suggested but not available for checking:
  'rgl', 'numDeriv', 'SparseM'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

Package suggested but not available for checking: 'sn'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'abind', 'ggplot2', 'prodlim', 'quadprog', 'Rdpack', 'rootSolve'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'ExPosition', 'alluvial'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'zoo', 'plyr', 'reshape2'

Packages suggested but not available for checking: 'mvtnorm', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/pairwiseSNHT.Rnw'
   'inst/doc/snht.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'shiny', 'xml2', 'httr', 'rvest', 'magrittr', 'wdman', 'RSelenium',
  'memoise'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'testthat', 'shinydashboard',
  'leaflet', 'plotly', 'DT'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'Rcpp', 'Rdpack'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'snow'

Package suggested but not available for checking: 'Rmpi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'rlecuyer', 'snow'

Package suggested but not available for checking: 'Rmpi'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'rlecuyer'

Package which this enhances but not available for checking: 'Rmpi'
Packages required but not available:
  'data.table', 'httr', 'jsonlite', 'xml2', 'openxlsx', 'progress',
  'doParallel', 'foreach', 'ggplot2', 'kableExtra', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
KS.test: no visible global function definition for 'quantile'
KS.test : Fgaus: no visible global function definition for 'pnorm'
KS.test: no visible global function definition for 'setNames'
cs.test: no visible global function definition for 'pbinom'
cs.test: no visible global function definition for 'pnorm'
cs.test: no visible global function definition for 'setNames'
kde: no visible global function definition for 'quantile'
kde : Fgaus: no visible global function definition for 'pnorm'
kde: no visible global function definition for 'par'
kre: no visible global function definition for 'quantile'
kre: no visible global function definition for 'lines'
ns.test: no visible global function definition for 'complete.cases'
ns.test: no visible global function definition for 'qnorm'
ns.test: no visible global function definition for 'pnorm'
ns.test: no visible global function definition for 'pchisq'
ns.test: no visible global function definition for 'setNames'
ns.test: no visible global function definition for 'qt'
quant.test: no visible global function definition for 'complete.cases'
quant.test: no visible global function definition for 'pbinom'
quant.test: no visible global function definition for 'pnorm'
quant.test: no visible global function definition for 'setNames'
quant.test: no visible global function definition for 'quantile'
quant.test: no visible global function definition for 'phyper'
runs.test: no visible global function definition for 'median'
runs.test: no visible global function definition for 'setNames'
runs.test: no visible global function definition for 'pnorm'
Undefined global functions or variables:
  complete.cases lines median par pbinom pchisq phyper pnorm qnorm qt
  quantile setNames
Consider adding
  importFrom("graphics", "lines", "par")
  importFrom("stats", "complete.cases", "median", "pbinom", "pchisq",
             "phyper", "pnorm", "qnorm", "qt", "quantile", "setNames")
to your NAMESPACE file.
Packages required but not available:
  'haplo.stats', 'mvtnorm', 'tidyr', 'plyr', 'ggplot2', 'BiocStyle',
  'poisbinom', 'Biostrings', 'VariantAnnotation',
  'TxDb.Hsapiens.UCSC.hg19.knownGene', 'GenomicRanges', 'IRanges',
  'S4Vectors', 'org.Hs.eg.db'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'biomaRt',
  'SNPlocs.Hsapiens.dbSNP144.GRCh38', 'MafDb.1Kgenomes.phase3.GRCh38',
  'BSgenome.Hsapiens.NCBI.GRCh38', 'GenomicScores', 'BSgenome'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'snpStats', 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'vcfR', 'ggplot2', 'Rtsne', 'adegenet', 'gridExtra', 'ggridges'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'Rcpp', 'Rdpack', 'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'knitr', 'testthat', 'doParallel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'RSQLite', 'biomaRt', 'Rcpp', 'R.utils', 'DBI'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

Files named as vignettes but with no recognized vignette engine:
   'inst/doc/snplist.Rnw'
(Is a VignetteBuilder field missing?)

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'clickR', 'future', 'future.apply', 'ggplot2', 'ggrepel', 'ks',
  'pbapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'combinat'

Packages suggested but not available for checking: 'mvtnorm', 'combinat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mclust'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'genetics'

Package suggested but not available for checking: 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'matrixcalc', 'stringr', 'rgl', 'impute'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'reshape2'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'gaston', 'data.table', 'Rcpp', 'RcppArmadillo'

Packages suggested but not available for checking:
  'tidyr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mnormt', 'numDeriv', 'quantreg'

Package suggested but not available for checking: 'R.rsp'

VignetteBuilder package required for checking but not installed: 'R.rsp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'igraph', 'poweRlaw', 'Rmpfr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'magic', 'emdbook', 'plyr', 'statmod', 'knitr', 'progress'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'mvtnorm', 'coda', 'numDeriv'

Packages suggested but not available for checking:
  'RegressionFactory', 'MfUSampler'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'DoE.base', 'combinat', 'FrF2', 'igraph', 'lhs', 'conf.design'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'np', 'minqa', 'pbmcapply'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ggplot2', 'gridExtra', 'ellipse', 'shiny', 'FactoMineR', 'ggrepel',
  'magrittr', 'htmlTable', 'stringr', 'RColorBrewer', 'reshape2',
  'flextable', 'purrr', 'tibble', 'dplyr', 'forcats', 'rlang', 'tidyr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'dplyr', 'data.table', 'magrittr'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'data.table', 'curl', 'httr', 'jsonlite', 'oai', 'wpp2015',
  'countrycode', 'stringr', 'XML', 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown', 'ggplot2', 'reshape2', 'formatR'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'Rcpp'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tidyverse', 'dplyr', 'magrittr', 'stringr', 'rlang', 'tidyselect',
  'tidyr', 'devtools'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'censusapi', 'dplyr', 'magrittr', 'mice', 'psych', 'purrr', 'rlang',
  'stringr', 'tidycensus', 'tidyr'

Packages suggested but not available for checking:
  'USpopcenters', 'geosphere', 'ggplot2', 'sf', 'testthat', 'tibble',
  'tigris', 'units'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'dplyr', 'fs', 'magrittr', 'rlang', 'tibble'

Package suggested but not available for checking: 'ggplot2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'mvtnorm'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available: 'crul', 'jsonlite', 'R6', 'mime'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'png'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'sampling'

Packages suggested but not available for checking:
  'ggplot2', 'VGAM', 'shinyjs', 'ggExtra', 'gridExtra'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'arrayhelpers', 'svUnit'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Packages required but not available:
  'arm', 'caret', 'Cubist', 'deSolve', 'e1071', 'FuzzyAHP',
  'googledrive', 'Hmisc', 'kernlab', 'quantregForest', 'qrnn',
  'randomForest', 'ranger', 'raster', 'png', 'rgdal', 'soiltexture',
  'sp'

Packages suggested but not available for checking:
  'maptools', 'aqp', 'plyr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'aqp', 'xml2', 'sp', 'raster', 'curl', 'data.table', 'DBI'

Packages suggested but not available for checking:
  'rgdal', 'jsonlite', 'httr', 'sf', 'wk', 'rvest', 'odbc', 'RSQLite',
  'testthat', 'scales'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'nloptr', 'snowfall', 'quadprog', 'Rmpfr', 'SoilHyP'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'data.table', 'lubridate'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'shiny', 'shinydashboard', 'fields'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rpanel'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'glmnet', 'ncvreg', 'brglm2'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'deSolve', 'igraph', 'assertthat', 'expm', 'sets', 'purrr'

Packages suggested but not available for checking:
  'FME', 'knitr', 'rmarkdown', 'getopt', 'tinytex'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'stringr'

Packages suggested but not available for checking:
  'testthat', 'covr', 'knitr', 'rmarkdown', 'markdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'sp'

Package suggested but not available for checking: 'xtable'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'raster'
Packages required but not available:
  'dplyr', 'magrittr', 'lubridate', 'PAutilities', 'rlang',
  'svDialogs', 'zoo'

Packages suggested but not available for checking: 'data.table', 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'zoo', 'latticeExtra', 'RColorBrewer'

Packages suggested but not available for checking:
  'sp', 'raster', 'rasterVis', 'tdr', 'meteoForecast'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'lubridate'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'ranger', 'data.table', 'igraph', 'future.apply', 'R6', 'lgr'

Packages suggested but not available for checking:
  'tidyverse', 'uwot', 'mlbench', 'rsample'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr'
'LazyData' is specified without a 'data' directory
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  Error in library(testthat) : there is no package called 'testthat'
  Execution halted
Packages required but not available:
  'dplyr', 'plyr', 'crul', 'xml2', 'jsonlite', 'tibble', 'R6'

Packages suggested but not available for checking:
  'testthat', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'httr', 'jsonlite', 'dplyr', 'mime'

Packages suggested but not available for checking:
  'testthat', 'shiny', 'shinyjs', 'openssl'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Skipping vignette re-building
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'
Package required but not available: 'reportr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'igraph', 'markdown', 'scatterplot3d', 'shiny', 'ggplot2',
  'ggwordcloud', 'metR', 'interp'

Packages suggested but not available for checking:
  'testthat', 'rmarkdown', 'knitr', 'hexbin', 'shinycssloaders',
  'shinyBS', 'shinyjs', 'shinyjqui'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Malformed Description field: should contain one or more complete sentences.
bm: no visible global function definition for 'rnorm'
bm: no visible global function definition for 'ts'
fbm: no visible global function definition for 'fft'
fbm: no visible global function definition for 'rnorm'
fbm: no visible global function definition for 'ts'
gbm: no visible global function definition for 'rnorm'
gbm: no visible global function definition for 'ts'
Undefined global functions or variables:
  fft rnorm ts
Consider adding
  importFrom("stats", "fft", "rnorm", "ts")
to your NAMESPACE file.
'LazyData' is specified without a 'data' directory
getAlpha: no visible global function definition for 'pbinom'
kfweOrd: no visible global function definition for 'qnbinom'
Undefined global functions or variables:
  pbinom qnbinom
Consider adding
  importFrom("stats", "pbinom", "qnbinom")
to your NAMESPACE file.
Packages required but not available:
  'rlist', 'kohonen', 'shiny', 'dplyr', 'plyr', 'openair',
  'colourpicker', 'shinycssloaders', 'shinycustomloader'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'crayon', 'Rcpp', 'RcppArmadillo', 'RcppProgress'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'plyr', 'orthopolynom', 'testthat'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'hexbin', 'kohonen', 'som'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'hexbin'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'geosphere', 'sp'

Packages suggested but not available for checking:
  'reshape2', 'Hmisc', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available:
  'tuneR', 'seewave', 'ggplot2', 'jsonlite', 'mime', 'suncalc', 'hms'

Packages suggested but not available for checking:
  'av', 'testthat', 'covr', 'WaveletComp', 'devtools',
  'googleCloudStorageR', 'googleLanguageR', 'knitr', 'rmarkdown',
  'spelling'

VignetteBuilder package required for checking but not installed: 'knitr'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: 'tuneR'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages suggested but not available for checking: 'rgl', 'testthat'
'LazyData' is specified without a 'data' directory
Package required but not available: 'elasticnet'

Package suggested but not available for checking: 'testthat'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Packages required but not available: 'circular', 'ADGofTest'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package suggested but not available for checking: 'SpATS'