Running 'testthat.R' [66s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(fido)
  
  Attaching package: 'fido'
  
  The following objects are masked from 'package:stats':
  
      coef, predict
  
  The following objects are masked from 'package:base':
  
      as.list, print, summary
  
  > 
  > #Sys.setenv(KMP_DUPLICATE_LIB_OK="TRUE")
  > test_check("fido")
    [1]  1.715291466 -0.105381402 -0.422223657  0.951722358  1.439304592
    [6] -0.568362220 -1.405095202  0.761242246  1.097090411  0.654750133
   [11] -0.420592486  0.152489468 -0.223099617  0.281776233  0.711711813
   [16]  0.558103695 -1.399132758  0.388916656  1.017131518 -0.114939070
   [21] -0.832262802  1.108103200 -0.925469384  1.035944441  0.713849965
   [26] -0.730986566  0.145157372  1.509209785 -1.277567212  0.281685248
   [31] -2.067846005 -0.161894988 -0.868705580 -0.003773478  0.627261215
   [36]  2.879695369  0.356384791 -1.660734546  1.077649624  0.699937354
   [41] -0.835122814 -0.398465489  1.075318683 -0.993390644 -0.813730026
   [46] -0.016707844 -0.046697828  1.488172814  0.724800864  1.068620440
   [51] -1.118154276  0.785712856  0.639801064  0.273283975  1.338797781
   [56] -0.203849088  1.503819934  1.783507167 -0.290666233 -0.499506190
   [61]  0.601918158  1.005946212 -1.903241234  2.485689259 -0.456338961
   [66]  0.325672880  0.115532378  1.015170657 -0.251353065  0.600485649
   [71]  0.334228956 -1.089954848  0.503949634 -0.465852903 -0.769076977
   [76] -0.100097397 -0.373961069 -0.944340537 -0.010428613 -0.208040833
   [81]  0.662767764 -1.923556181  1.244085518 -1.785591150  0.336343088
   [86] -1.368419648 -0.491437767 -0.891558266  0.899056317 -0.825083363
   [91]  1.649072673 -1.328478632 -0.968572603  0.548202396  0.450143247
   [96]  0.370091948  0.523078639 -1.136144128  0.634122357  1.101975599
  $data
  # A tibble: 16 x 9
     Parameter coord  covariate      val .lower .upper .width .point .interval
     <chr>     <fct>  <fct>        <dbl>  <dbl>  <dbl>  <dbl> <chr>  <chr>    
   1 Lambda    clr_c1 x1         4.61     4.35   4.85    0.5  mean   qi       
   2 Lambda    clr_c1 x2        -1.49    -1.80  -1.17    0.5  mean   qi       
   3 Lambda    clr_c2 x1        -6.53    -7.08  -5.94    0.5  mean   qi       
   4 Lambda    clr_c2 x2        -0.00172 -0.462  0.458   0.5  mean   qi       
   5 Lambda    clr_c1 x1         4.61     4.12   5.08    0.8  mean   qi       
   6 Lambda    clr_c1 x2        -1.49    -2.08  -0.909   0.8  mean   qi       
   7 Lambda    clr_c2 x1        -6.53    -7.64  -5.47    0.8  mean   qi       
   8 Lambda    clr_c2 x2        -0.00172 -0.897  0.885   0.8  mean   qi       
   9 Lambda    clr_c1 x1         4.61     3.90   5.36    0.95 mean   qi       
  10 Lambda    clr_c1 x2        -1.49    -2.40  -0.574   0.95 mean   qi       
  11 Lambda    clr_c2 x1        -6.53    -8.26  -4.91    0.95 mean   qi       
  12 Lambda    clr_c2 x2        -0.00172 -1.35   1.40    0.95 mean   qi       
  13 Lambda    clr_c1 x1         4.61     3.57   5.55    0.99 mean   qi       
  14 Lambda    clr_c1 x2        -1.49    -2.66  -0.233   0.99 mean   qi       
  15 Lambda    clr_c2 x1        -6.53    -8.79  -4.42    0.99 mean   qi       
  16 Lambda    clr_c2 x2        -0.00172 -1.71   1.77    0.99 mean   qi       
  
  $layers
  $layers[[1]]
  geom_interval: orientation = NA, interval_size_range = c(1, 6), interval_size_domain = c(1, 6), na.rm = FALSE
  stat_identity: na.rm = FALSE
  position_identity 
  
  $layers[[2]]
  geom_point: na.rm = FALSE
  stat_identity: na.rm = FALSE
  position_identity 
  
  
  $scales
  <ggproto object: Class ScalesList, gg>
      add: function
      clone: function
      find: function
      get_scales: function
      has_scale: function
      input: function
      n: function
      non_position_scales: function
      scales: list
      super:  <ggproto object: Class ScalesList, gg>
  
  $mapping
  Aesthetic mapping: 
  * `x`    -> `.data$val`
  * `y`    -> `.data$coord`
  * `xmin` -> `.lower`
  * `xmax` -> `.upper`
  
  $theme
  List of 93
   $ line                      :List of 6
    ..$ colour       : chr "black"
    ..$ size         : num 0.5
    ..$ linetype     : num 1
    ..$ lineend      : chr "butt"
    ..$ arrow        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_line" "element"
   $ rect                      :List of 5
    ..$ fill         : chr "white"
    ..$ colour       : chr "black"
    ..$ size         : num 0.5
    ..$ linetype     : num 1
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_rect" "element"
   $ text                      :List of 11
    ..$ family       : chr ""
    ..$ face         : chr "plain"
    ..$ colour       : chr "black"
    ..$ size         : num 11
    ..$ hjust        : num 0.5
    ..$ vjust        : num 0.5
    ..$ angle        : num 0
    ..$ lineheight   : num 0.9
    ..$ margin       : 'margin' num [1:4] 0points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ title                     : NULL
   $ aspect.ratio              : NULL
   $ axis.title                : NULL
   $ axis.title.x              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 2.75points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.title.x.top          :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 0
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 2.75points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.title.x.bottom       : NULL
   $ axis.title.y              : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ axis.title.y.left         : NULL
   $ axis.title.y.right        :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 0
    ..$ angle        : num -90
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 0points 2.75points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text                 :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : chr "grey30"
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.x               :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 2.2points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.x.top           :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : num 0
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 2.2points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.x.bottom        : NULL
   $ axis.text.y               :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 1
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 2.2points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.text.y.left          : NULL
   $ axis.text.y.right         :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 0
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 0points 2.2points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ axis.ticks                : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ axis.ticks.x              : NULL
   $ axis.ticks.x.top          : NULL
   $ axis.ticks.x.bottom       : NULL
   $ axis.ticks.y              : NULL
   $ axis.ticks.y.left         : NULL
   $ axis.ticks.y.right        : NULL
   $ axis.ticks.length         : 'simpleUnit' num 2.75points
    ..- attr(*, "unit")= int 8
   $ axis.ticks.length.x       : NULL
   $ axis.ticks.length.x.top   : NULL
   $ axis.ticks.length.x.bottom: NULL
   $ axis.ticks.length.y       : NULL
   $ axis.ticks.length.y.left  : NULL
   $ axis.ticks.length.y.right : NULL
   $ axis.line                 : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ axis.line.x               : NULL
   $ axis.line.x.top           : NULL
   $ axis.line.x.bottom        : NULL
   $ axis.line.y               : NULL
   $ axis.line.y.left          : NULL
   $ axis.line.y.right         : NULL
   $ legend.background         : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ legend.margin             : 'margin' num [1:4] 5.5points 5.5points 5.5points 5.5points
    ..- attr(*, "unit")= int 8
   $ legend.spacing            : 'simpleUnit' num 11points
    ..- attr(*, "unit")= int 8
   $ legend.spacing.x          : NULL
   $ legend.spacing.y          : NULL
   $ legend.key                : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ legend.key.size           : 'simpleUnit' num 1.2lines
    ..- attr(*, "unit")= int 3
   $ legend.key.height         : NULL
   $ legend.key.width          : NULL
   $ legend.text               :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ legend.text.align         : NULL
   $ legend.title              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 0
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ legend.title.align        : NULL
   $ legend.position           : chr "right"
   $ legend.direction          : NULL
   $ legend.justification      : chr "center"
   $ legend.box                : NULL
   $ legend.box.just           : NULL
   $ legend.box.margin         : 'margin' num [1:4] 0cm 0cm 0cm 0cm
    ..- attr(*, "unit")= int 1
   $ legend.box.background     : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ legend.box.spacing        : 'simpleUnit' num 11points
    ..- attr(*, "unit")= int 8
   $ panel.background          : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ panel.border              : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ panel.spacing             : 'simpleUnit' num 5.5points
    ..- attr(*, "unit")= int 8
   $ panel.spacing.x           : NULL
   $ panel.spacing.y           : NULL
   $ panel.grid                :List of 6
    ..$ colour       : chr "grey92"
    ..$ size         : NULL
    ..$ linetype     : NULL
    ..$ lineend      : NULL
    ..$ arrow        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_line" "element"
   $ panel.grid.major          : NULL
   $ panel.grid.minor          :List of 6
    ..$ colour       : NULL
    ..$ size         : 'rel' num 0.5
    ..$ linetype     : NULL
    ..$ lineend      : NULL
    ..$ arrow        : logi FALSE
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_line" "element"
   $ panel.grid.major.x        : NULL
   $ panel.grid.major.y        : NULL
   $ panel.grid.minor.x        : NULL
   $ panel.grid.minor.y        : NULL
   $ panel.ontop               : logi FALSE
   $ plot.background           : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ plot.title                :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 1.2
    ..$ hjust        : num 0
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 5.5points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.title.position       : chr "panel"
   $ plot.subtitle             :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : num 0
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 0points 0points 5.5points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.caption              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : num 1
    ..$ vjust        : num 1
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 5.5points 0points 0points 0points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.caption.position     : chr "panel"
   $ plot.tag                  :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : 'rel' num 1.2
    ..$ hjust        : num 0.5
    ..$ vjust        : num 0.5
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ plot.tag.position         : chr "topleft"
   $ plot.margin               : 'margin' num [1:4] 5.5points 5.5points 5.5points 5.5points
    ..- attr(*, "unit")= int 8
   $ strip.background          : list()
    ..- attr(*, "class")= chr [1:2] "element_blank" "element"
   $ strip.background.x        : NULL
   $ strip.background.y        : NULL
   $ strip.placement           : chr "inside"
   $ strip.text                :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : chr "grey10"
    ..$ size         : 'rel' num 0.8
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : NULL
    ..$ lineheight   : NULL
    ..$ margin       : 'margin' num [1:4] 4.4points 4.4points 4.4points 4.4points
    .. ..- attr(*, "unit")= int 8
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ strip.text.x              : NULL
   $ strip.text.y              :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : num -90
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   $ strip.switch.pad.grid     : 'simpleUnit' num 2.75points
    ..- attr(*, "unit")= int 8
   $ strip.switch.pad.wrap     : 'simpleUnit' num 2.75points
    ..- attr(*, "unit")= int 8
   $ strip.text.y.left         :List of 11
    ..$ family       : NULL
    ..$ face         : NULL
    ..$ colour       : NULL
    ..$ size         : NULL
    ..$ hjust        : NULL
    ..$ vjust        : NULL
    ..$ angle        : num 90
    ..$ lineheight   : NULL
    ..$ margin       : NULL
    ..$ debug        : NULL
    ..$ inherit.blank: logi TRUE
    ..- attr(*, "class")= chr [1:2] "element_text" "element"
   - attr(*, "class")= chr [1:2] "theme" "gg"
   - attr(*, "complete")= logi TRUE
   - attr(*, "validate")= logi TRUE
  
  $coordinates
  <ggproto object: Class CoordCartesian, Coord, gg>
      aspect: function
      backtransform_range: function
      clip: on
      default: TRUE
      distance: function
      expand: TRUE
      is_free: function
      is_linear: function
      labels: function
      limits: list
      modify_scales: function
      range: function
      render_axis_h: function
      render_axis_v: function
      render_bg: function
      render_fg: function
      setup_data: function
      setup_layout: function
      setup_panel_guides: function
      setup_panel_params: function
      setup_params: function
      train_panel_guides: function
      transform: function
      super:  <ggproto object: Class CoordCartesian, Coord, gg>
  
  $facet
  <ggproto object: Class FacetGrid, Facet, gg>
      compute_layout: function
      draw_back: function
      draw_front: function
      draw_labels: function
      draw_panels: function
      finish_data: function
      init_scales: function
      map_data: function
      params: list
      setup_data: function
      setup_params: function
      shrink: TRUE
      train_scales: function
      vars: function
      super:  <ggproto object: Class FacetGrid, Facet, gg>
  
  $plot_env
  <environment: 0x00000000325bece0>
  
  $labels
  $labels$x
  [1] "Log-Ratio Value"
  
  $labels$y
  [1] "coord"
  
  $labels$xmin
  [1] ".lower"
  
  $labels$xmax
  [1] ".upper"
  
  
  $guides
  $guides$colour
  $title
  [1] "Credible\nInterval"
  
  $title.position
  NULL
  
  $title.theme
  NULL
  
  $title.hjust
  NULL
  
  $title.vjust
  NULL
  
  $label
  [1] TRUE
  
  $label.position
  NULL
  
  $label.theme
  NULL
  
  $label.hjust
  NULL
  
  $label.vjust
  NULL
  
  $keywidth
  NULL
  
  $keyheight
  NULL
  
  $direction
  NULL
  
  $override.aes
  named list()
  
  $nrow
  NULL
  
  $ncol
  NULL
  
  $byrow
  [1] FALSE
  
  $reverse
  [1] FALSE
  
  $order
  [1] 0
  
  $available_aes
  [1] "any"
  
  $name
  [1] "legend"
  
  attr(,"class")
  [1] "guide"  "legend"
  
  
  attr(,"class")
  [1] "gg"     "ggplot"
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 102 ]
  
  == Failed tests ================================================================
  -- Failure (test-pibble.R:60:3): optim sylvester gets same result --------------
  plain > sylv not equal to TRUE.
  1 element mismatch
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 102 ]
  Error: Test failures
  Execution halted