Error(s) in re-building vignettes:
--- re-building ‘CRS_projections_transformations.Rmd’ using rmarkdown
Quitting from lines 365-370 (CRS_projections_transformations.Rmd) 
Error: processing vignette 'CRS_projections_transformations.Rmd' failed with diagnostics:
no such table: chunks
--- failed re-building ‘CRS_projections_transformations.Rmd’

--- re-building ‘PROJ6_GDAL3.Rmd’ using rmarkdown
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded ellps WGS 84 in Proj4 definition: +proj=merc +a=6378137 +b=6378137 +lat_ts=0 +lon_0=0 +x_0=0 +y_0=0 +k=1 +units=m +nadgrids=@null +wktext +no_defs +type=crs
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum World Geodetic System 1984 in Proj4 definition
Warning in showSRID(SRS_string, format = "PROJ", multiline = "NO", prefer_proj = prefer_proj) :
  Discarded datum European Terrestrial Reference System 1989 in Proj4 definition
--- finished re-building ‘PROJ6_GDAL3.Rmd’

--- re-building ‘OGR_shape_encoding.Rnw’ using Sweave
Read 1 item
--- finished re-building ‘OGR_shape_encoding.Rnw’

SUMMARY: processing the following file failed:
  ‘CRS_projections_transformations.Rmd’

Error: Vignette re-building failed.
Execution halted