Error(s) in re-building vignettes:
--- re-building 'atable_usage.rnw' using knitr
Loading required package: knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

Loading required package: atable
Warning in stats::ks.test(x, y, alternative = c("two.sided"), ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y, alternative = c("two.sided"), ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y, alternative = c("two.sided"), ...) :
  cannot compute exact p-value with ties
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in stats::chisq.test(group, value) :
  Chi-squared approximation may be incorrect
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "atable_usage.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'atable_usage.rnw' failed with diagnostics:
running 'texi2dvi' on 'atable_usage.tex' failed

LaTeX errors:
ble_usage.tex:130: LaTeX Error: Not in outer par mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
ble_usage.tex:181: LaTeX Error: Not in outer par mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
ble_usage.tex:271: LaTeX Error: Not in outer par mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
ble_usage.tex:338: LaTeX Error: Not in outer par mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
ble_usage.tex:403: LaTeX Error: Not in outer par mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
ble_usage.tex:543: LaTeX Error: Not in outer par mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
ble_usage.tex:632: LaTeX Error: Not in outer par mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
ble_usage.tex:684: LaTeX Error: Not in outer par mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
ble_usage.tex:746: LaTeX Error: Not in outer par mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              

--- failed re-building 'atable_usage.rnw'

--- re-building 'extending.Rnw' using knitr
Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y, alternative = c("two.sided"), ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y, alternative = c("two.sided"), ...) :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y, alternative = c("two.sided"), ...) :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y, alternative = c("two.sided"), ...) :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
  cannot compute exact p-value with ties
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "extending.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'extending.Rnw' failed with diagnostics:
running 'texi2dvi' on 'extending.tex' failed

LaTeX errors:
ending.tex:169: LaTeX Error: \begin{document} ended by \end{center}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              

--- failed re-building 'extending.Rnw'

--- re-building 'modifying.Rnw' using knitr
Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y, alternative = c("two.sided"), ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y, alternative = c("two.sided"), ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y) :
  cannot compute exact p-value with ties
Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y) :
  cannot compute exact p-value with ties
Warning in stats::ks.test(x, y) :
  cannot compute exact p-value with ties
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "modifying.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'modifying.Rnw' failed with diagnostics:
running 'texi2dvi' on 'modifying.tex' failed

LaTeX errors:
ifying.tex:119: LaTeX Error: \begin{document} ended by \end{center}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
ifying.tex:206: LaTeX Error: \begin{document} ended by \end{center}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              

--- failed re-building 'modifying.Rnw'

SUMMARY: processing the following files failed:
  'atable_usage.rnw' 'extending.Rnw' 'modifying.Rnw'

Error: Vignette re-building failed.
Execution halted